LOCUS       DAQSLY010000001        48426 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.001, whole genome shotgun sequence.
ACCESSION   DAQSLY010000001 DAQSLY010000000
VERSION     DAQSLY010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 48426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 48426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..48426
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.001"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..210)
                     /locus_tag="R2H98_000001"
     CDS             complement(<1..210)
                     /locus_tag="R2H98_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022941.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQ"
     gene            125..1126
                     /gene="mltG"
                     /locus_tag="R2H98_000002"
     CDS             125..1126
                     /gene="mltG"
                     /locus_tag="R2H98_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEE9022942.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            1207..1638
                     /gene="flgB"
                     /locus_tag="R2H98_000003"
     CDS             1207..1638
                     /gene="flgB"
                     /locus_tag="R2H98_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEE9022943.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDKKELELAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            1648..2142
                     /gene="flgC"
                     /locus_tag="R2H98_000004"
     CDS             1648..2142
                     /gene="flgC"
                     /locus_tag="R2H98_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEE9022944.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            2149..2445
                     /gene="fliE"
                     /locus_tag="R2H98_000005"
     CDS             2149..2445
                     /gene="fliE"
                     /locus_tag="R2H98_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEE9022945.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            2452..4260
                     /locus_tag="R2H98_000006"
     CDS             2452..4260
                     /locus_tag="R2H98_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEE9022946.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(4257..6025)
                     /locus_tag="R2H98_000007"
                     /pseudo
     CDS             complement(4257..6025)
                     /locus_tag="R2H98_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi symporter"
     gene            complement(6029..6463)
                     /locus_tag="R2H98_000008"
     CDS             complement(6029..6463)
                     /locus_tag="R2H98_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022947.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDEQTLLEPIKMDVYPKF
                     CDLIDEKIRQFKENVQNTNLALKNSDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMNEFEKLKG"
     gene            complement(6463..6780)
                     /locus_tag="R2H98_000009"
     CDS             complement(6463..6780)
                     /locus_tag="R2H98_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEE9022948.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KSY"
     gene            complement(6777..8603)
                     /gene="htpG"
                     /locus_tag="R2H98_000010"
     CDS             complement(6777..8603)
                     /gene="htpG"
                     /locus_tag="R2H98_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEE9022949.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEINDASK
                     EEQGTSITLYLKDDEFANTYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLAKIINKAFS"
     gene            complement(8676..9044)
                     /gene="crcB"
                     /locus_tag="R2H98_000011"
     CDS             complement(8676..9044)
                     /gene="crcB"
                     /locus_tag="R2H98_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEE9022950.1"
                     /translation="MLNTLLVVGFGGFIGAILRMFSINLVNKFFPYSISLGTLFVNVL
                     GSFIIGLLFSYAQNKCLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYPHFALN
                     IILNVFLCLFAAWLGFIIFK"
     gene            complement(9038..9730)
                     /locus_tag="R2H98_000012"
     CDS             complement(9038..9730)
                     /locus_tag="R2H98_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEE9022951.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(9711..10907)
                     /locus_tag="R2H98_000013"
     CDS             complement(9711..10907)
                     /locus_tag="R2H98_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEE9022952.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNNEYPSRVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLSNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYTLWFLAVLFGALFVWRKNYIILALAVVCFVLSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(10904..11551)
                     /gene="purQ"
                     /locus_tag="R2H98_000014"
     CDS             complement(10904..11551)
                     /gene="purQ"
                     /locus_tag="R2H98_000014"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEE9022953.1"
                     /translation="MKVAIIRFLGTNCEFDTAYAFEKLGVKTQIIWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNGNAFLKNFKKDEIINLPIAHGEGNYYADEAILKELQDKDL
                     ITLKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDIGLKMLKGFLF"
     gene            complement(11553..11798)
                     /gene="purS"
                     /locus_tag="R2H98_000015"
     CDS             complement(11553..11798)
                     /gene="purS"
                     /locus_tag="R2H98_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEE9022954.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(11807..12517)
                     /locus_tag="R2H98_000016"
     CDS             complement(11807..12517)
                     /locus_tag="R2H98_000016"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEE9022955.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(12519..13853)
                     /locus_tag="R2H98_000017"
     CDS             complement(12519..13853)
                     /locus_tag="R2H98_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEE9022956.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISNLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDKATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGTTKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            13980..14270
                     /locus_tag="R2H98_000018"
     CDS             13980..14270
                     /locus_tag="R2H98_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEE9022957.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAIEENDIQSIKELNKAIDMFMK"
     gene            14382..16955
                     /locus_tag="R2H98_000019"
     CDS             14382..16955
                     /locus_tag="R2H98_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9022958.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDN
                     ASILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(16983..18914)
                     /locus_tag="R2H98_000020"
     CDS             complement(16983..18914)
                     /locus_tag="R2H98_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEE9022959.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYAAYLFTSVDTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPEKTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(18911..19462)
                     /gene="maf"
                     /locus_tag="R2H98_000021"
     CDS             complement(18911..19462)
                     /gene="maf"
                     /locus_tag="R2H98_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEE9022960.1"
                     /translation="MLILASNSISRANLLKTAKIDFKQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKTKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(19462..21990)
                     /gene="alaS"
                     /locus_tag="R2H98_000022"
     CDS             complement(19462..21990)
                     /gene="alaS"
                     /locus_tag="R2H98_000022"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEE9022961.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFITKREVL
                     DTQKFFNLNLSFIKAGEELKVGDIVHARINTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALSKEELESIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGVKKIKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDAPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKIDEALKQSLETIEKAL"
     gene            22105..23178
                     /locus_tag="R2H98_000023"
     CDS             22105..23178
                     /locus_tag="R2H98_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEE9022962.1"
                     /translation="MNFINLQAQYLAYKDEINAKIESVLSSSSFIGGTKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEISKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            23183..24049
                     /locus_tag="R2H98_000024"
     CDS             23183..24049
                     /locus_tag="R2H98_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEE9022963.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            24046..24957
                     /locus_tag="R2H98_000025"
     CDS             24046..24957
                     /locus_tag="R2H98_000025"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEE9022964.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDILANLDNKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(25017..26252)
                     /locus_tag="R2H98_000026"
     CDS             complement(25017..26252)
                     /locus_tag="R2H98_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEE9022965.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(26556..27554)
                     /gene="mnmH"
                     /locus_tag="R2H98_000027"
     CDS             complement(26556..27554)
                     /gene="mnmH"
                     /locus_tag="R2H98_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEE9022966.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGKQPTQKAFEANLFYTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNFRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
     gene            complement(27544..28029)
                     /locus_tag="R2H98_000028"
     CDS             complement(27544..28029)
                     /locus_tag="R2H98_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEE9022967.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEHIENLSDEAWQEISQFVRLGVRILKSELHAGGVNI
                     GMNLSKDAGAGIAPHCHYHLVPRWVGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNV
                     K"
     gene            complement(28040..28816)
                     /gene="trpC"
                     /locus_tag="R2H98_000029"
     CDS             complement(28040..28816)
                     /gene="trpC"
                     /locus_tag="R2H98_000029"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEE9022968.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHTPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            complement(28813..30090)
                     /locus_tag="R2H98_000030"
     CDS             complement(28813..30090)
                     /locus_tag="R2H98_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEE9022969.1"
                     /translation="MYRYLLFVLVAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALKKEPQNLYYLDSLAWGYYKQGDCKK
                     AWEILKQTLEDKEFANSDESKAHAKAIKACIKP"
     gene            complement(30063..30437)
                     /locus_tag="R2H98_000031"
     CDS             complement(30063..30437)
                     /locus_tag="R2H98_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEE9022970.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(30427..31128)
                     /locus_tag="R2H98_000032"
     CDS             complement(30427..31128)
                     /locus_tag="R2H98_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEE9022971.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGALYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(31134..31283)
                     /locus_tag="R2H98_000033"
     CDS             complement(31134..31283)
                     /locus_tag="R2H98_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022972.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            complement(31301..31377)
                     /locus_tag="R2H98_000034"
     tRNA            complement(31301..31377)
                     /locus_tag="R2H98_000034"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(31341..31343),aa:Arg,seq:cct)
     gene            complement(31406..33481)
                     /gene="fusA"
                     /locus_tag="R2H98_000035"
     CDS             complement(31406..33481)
                     /gene="fusA"
                     /locus_tag="R2H98_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEE9022973.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(33494..33964)
                     /gene="rpsG"
                     /locus_tag="R2H98_000036"
     CDS             complement(33494..33964)
                     /gene="rpsG"
                     /locus_tag="R2H98_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEE9022974.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(34034..34420)
                     /locus_tag="R2H98_000037"
     CDS             complement(34034..34420)
                     /locus_tag="R2H98_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEE9022975.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(34540..39093)
                     /gene="rpoC"
                     /locus_tag="R2H98_000038"
     CDS             complement(34540..39093)
                     /gene="rpoC"
                     /locus_tag="R2H98_000038"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEE9022976.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKQGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPIVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKITQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(39086..43222)
                     /gene="rpoB"
                     /locus_tag="R2H98_000039"
     CDS             complement(39086..43222)
                     /gene="rpoB"
                     /locus_tag="R2H98_000039"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEE9022977.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKMLEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(43331..43708)
                     /gene="rplL"
                     /locus_tag="R2H98_000040"
     CDS             complement(43331..43708)
                     /gene="rplL"
                     /locus_tag="R2H98_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEE9022978.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMIAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(43729..44208)
                     /locus_tag="R2H98_000041"
     CDS             complement(43729..44208)
                     /locus_tag="R2H98_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEE9022979.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLGVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(44360..45061)
                     /locus_tag="R2H98_000042"
     CDS             complement(44360..45061)
                     /locus_tag="R2H98_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEE9022980.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(45116..45541)
                     /gene="rplK"
                     /locus_tag="R2H98_000043"
     CDS             complement(45116..45541)
                     /gene="rplK"
                     /locus_tag="R2H98_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEE9022981.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(45567..46100)
                     /gene="nusG"
                     /locus_tag="R2H98_000044"
     CDS             complement(45567..46100)
                     /gene="nusG"
                     /locus_tag="R2H98_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEE9022982.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(46110..46289)
                     /gene="secE"
                     /locus_tag="R2H98_000045"
     CDS             complement(46110..46289)
                     /gene="secE"
                     /locus_tag="R2H98_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEE9022983.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVVVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(46308..46383)
                     /locus_tag="R2H98_000046"
     tRNA            complement(46308..46383)
                     /locus_tag="R2H98_000046"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46348..46350),aa:Trp,seq:cca)
     gene            complement(46396..46554)
                     /gene="rpmG"
                     /locus_tag="R2H98_000047"
     CDS             complement(46396..46554)
                     /gene="rpmG"
                     /locus_tag="R2H98_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEE9022984.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(46607..47806)
                     /gene="tuf"
                     /locus_tag="R2H98_000048"
     CDS             complement(46607..47806)
                     /gene="tuf"
                     /locus_tag="R2H98_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEE9022985.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(47875..47949)
                     /locus_tag="R2H98_000049"
     tRNA            complement(47875..47949)
                     /locus_tag="R2H98_000049"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(47915..47917),aa:Thr,seq:ggt)
     gene            complement(48054..48130)
                     /locus_tag="R2H98_000050"
     tRNA            complement(48054..48130)
                     /locus_tag="R2H98_000050"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(48094..48096),aa:Gly,seq:tcc)
     gene            complement(48137..48222)
                     /locus_tag="R2H98_000051"
     tRNA            complement(48137..48222)
                     /locus_tag="R2H98_000051"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(48186..48188),aa:Tyr,seq:gta)
     gene            complement(48272..48347)
                     /locus_tag="R2H98_000052"
     tRNA            complement(48272..48347)
                     /locus_tag="R2H98_000052"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(48312..48314),aa:Thr,seq:tgt)
BASE COUNT        16154 a         8868 c         6667 g        16737 t
ORIGIN      
        1 ttgtgatgaa atttcggaat tttgagtctc atttatagtg atattttttg ctcgtacaat
       61 taatttttta tctaatttaa tatataattg ttccaatttt aaaaaatcaa attggatact
      121 agagatgaca attccatttt taagcactat aaacaaagct aatataagca caacaaaaaa
      181 tacaacaata tataaaattt tctttttcat acgcaacttc tttttgatat ttattttggg
      241 gattttttat tatctaactc agcctttaaa aagcaattct gtggtattta ttccccaagg
      301 ttcaatttct caaattataa catatttaaa gcaaaataaa tatcagatga gtaatattga
      361 taaatatatt ttattttttt taggacaccc tcaatcaggc tggatcaaca taggtacaaa
      421 agatttaaat agagctgaat ttctacataa actcactatt gctaaagcag cacttcaaac
      481 cattactctt atcccaggag aaacaagcgt aatctttcta gaacaagcag ccaaacaact
      541 tggacttgat aaagatatac ttttaaaaga atttcaagct caagctcctt atgatgaagg
      601 agttttttta ccagaaactt ataaaatccc gaaaggcatt acagaaaatc tactcattca
      661 aatgctttta aaccatgctg aaatttccaa taaaaaaact tctgagaaaa tttttggtga
      721 ttataatcca aaaaaatggc accaatatat catcatcgct tctgtaatac aaaaagaagc
      781 tgctaatgac aatgaaatgc ctatagttgc aagcgtaatt tacaatcgac ttaaaaaagg
      841 tatgaaactt caaatggatg gaactttaaa ttatggaatt tattcccatg taaaagttac
      901 cccacaaaga ataagacaag ataatagctc ttataatacc tataaattta caggattgcc
      961 taaagaagcg gtttgtaatg tttctttagc tgctattcgt gcagctattt ttcctttaaa
     1021 gacagattat ttatattttg tgcgtgataa aaatactgga gttcatattt ttagcacaaa
     1081 tatagatgat cacaataaag ccataaattt acaaaaagga aaataatttt tgatattttt
     1141 atacaaaata gttaaattgg aacagtattt gcttgttaat attaaaaatt ataaaaagga
     1201 taaaaaatga ttaacccatt taaatcaaaa gaactagtca ctggtgcttt agcgggtaga
     1261 aatctaagaa atcaactcat caatgccaat cttgcaaatg ttgatactcc tttttataaa
     1321 gcaagagata ttgaatttga aacagctttg gtaaatcgtg caaatgaaat tttcaaaaaa
     1381 aatgacaaaa aagaattaga attggcagta accgaagaag ggcatcaaaa accttggaaa
     1441 tttcctgatc ctagtaaatc tactatttac ttaagagatg gtcatttggc aagaaatgat
     1501 gcaaatactg ttgatctaga tgtagaaact acagaaatga gtaaaaatac agttatgata
     1561 acagctcttg atggagtttt aagaagacaa agcaatatct ttagttctat acttgatgca
     1621 agctctaaat taagttaaag gtaaattatg gcatacttaa gtgattttga tattagtggt
     1681 tatggtttaa gtgctcaacg ttttagaatg aatgttatta gctctaatat agctaatgca
     1741 aacactacaa gaacagctga aggtgggcct tatagaagac gcgaagtgat ctttaaagca
     1801 acagattttg ataagctttt aaatgagcaa attaacaaag ataataattt tttaaaatat
     1861 gaaaatcctt taaatgatcc aagttcgcca gaagaagcta aacctgctat tcaaagtgtt
     1921 gtagtggata aagtggtcag agatgacaaa gattttcgta tgaagtatga tccaagccat
     1981 cctgatgcaa atgctgaagg ttatgtagcg tatccaaatg taaaccctgt tattgaaatg
     2041 gcagatttga ttgaagctac aagagcttat caagccaatg taagtgcttt tacaagtgca
     2101 aaaactatag ctcaaagtgc gattgattta ttaagaggat aataaaaaat gaacaatatt
     2161 aatgatttaa gattaaataa taatatttca aataccaaca aaagtcaaaa ttccacagga
     2221 attggtgatg aatttgccaa gatgcttaaa aatgaaatcg atgatttaaa taaagcacaa
     2281 gaaagtggag aagctgcaat gacagacatt gccacaggac aagtaaaaga tttacatcaa
     2341 gcagctatag ctatcactaa agctgaaagc agcatgaaat ttatgctaga agtaagaaat
     2401 aaagcaatca gtgcttataa agaaatcaca agaactcaaa tttaaaccct aatgcaagaa
     2461 tataaaaaaa atagggtttc aaaagttgcc tttgcctact gcatggcact tttgtttatg
     2521 attattttta tcagctctac tttttttctt acatcaaaac gtcatatacc taacactgaa
     2581 aaagatcaat acgctcttgc tctaagagga tcgattataa ccaaagataa ttttactatc
     2641 acaagttcta aacaaattta tcgtgctgaa attgatctta gaagcattaa caaagataaa
     2701 tttgatctat ttttaaagct ttttcaaatt tatagtggga taagtaacga tcaagtagca
     2761 gatattaaaa aaagaatgca aaatcaaaaa aaacgctctt ataattttgt tcttttacaa
     2821 aacttagact ccaagcaagc aagctacctt aaagatcttg ctaaaaaact ttatatacaa
     2881 ggttttttca aagcttttac aaataactca ggaagagttg aaacaagagg attaaatatc
     2941 atcgaacatg aagaagatag aatttacatg tcaaaagatt cttttactcc tattatcggt
     3001 tatactaaaa tgatattaga tccagaaagt ggaattttaa aaaatatagg agttaaaggt
     3061 ttagaaaaat actacgatgc atgtctaagc cctgttcaaa atgaaaaaat tcaaggactt
     3121 aaagatatag gtggaaatat tattttaaat ctaaattcac tacaacaaaa aaagatcaat
     3181 ggttgtgatt tatatttaaa tctttcttta aaactgcaaa aaagtataga gaaagctata
     3241 gatcaaagaa atgaggattt aaaagccaat gaaatcatcg ttggggtaat ggaaagtaaa
     3301 acaggaagaa ttttagctct agcaagctca aggcgttatg acccacaaaa tcgcggaaag
     3361 gatctatcag ttcttaatgc aagcgctata gaatacggct atgaagcagg ttctgttatc
     3421 aaacctttta tctttacaac agccttaaga cttggtaaaa taaaaatgga tgaagtgatt
     3481 aatacttatg gcggttctta caagctagga cgtttcacca tcaaagacga tcacaaaatg
     3541 gacaaaatga ctatggagga agttataaga tattcttcaa atataggcat gatacaaatt
     3601 gctaaaaggc ttaacaatat agaaatcgta tcaggactta aaatatttaa atttggcgaa
     3661 aaaagtggta ttgatctacc ctatgaacaa aaaggagaaa ttccaaatcc taagcgctta
     3721 agagatatag aaaaatctgt tttaagttat ggttatggac ttaaaacaac ctttatacaa
     3781 ctccttgcag cttataatgt tttcaacaat gatgggtttt atatcacacc acgtttagct
     3841 gaaaaattct atcaaaatgg acgctttaca aatcttgatg atgatgtaaa aaaagaaaaa
     3901 attctttcta gcgaagccgc taaaacgatg caaaatgttc ttataaatgt tatagaaaaa
     3961 ggaacaggaa aaaaggcaat tacacaaggt attattgcag gaggtaaaac aggaacggca
     4021 agaatagccg aaagacaagg ttacacctca aatcgctaca atgcatcctt ttttggtttt
     4081 gcaaatgatt taaatcacgc ctataccata ggagttctcg taagacatcc tactaaacct
     4141 tatagttatt atgctgcaca aagtgctttg cctatgttta aagatgttgt tgatatttta
     4201 atcaatgaag aatttctaac gcctatacaa gacaataacc aaactagcac aaacaactag
     4261 tttgatatat ctttagaaaa tatcacctca acagcaccta taagttcttc agcaatctta
     4321 gcagcaaaag ttgtatcatt aagtattgaa attccttcag ctgttgtgat ttttcttact
     4381 gaaataagat gttcaacatt gctcaaggtt aaagtatcga tttcttttaa aatttctttt
     4441 cctttttgaa gatttttaat aatcaaataa agcttttcac gatcttcaac aactctaagc
     4501 tcttcgatac ttcttaaaag ctctcctaaa ttcgatctaa ttttattgta ctctaaagcc
     4561 aaaaattcat tagaagaact agaatatttc ttaatatttg cttggataat ttttaaattt
     4621 ttagttgttt cggctaaatt tttagctgcc atcttaaagg taaaaatttt atgattcttt
     4681 gtttcatcgt taatataaac ttgtgcttta gttgaaaaat cgataatagc ttcaaaaaga
     4741 acctttatcc tagtttgata caaatagtcc aaatccacat ttttactaaa ccacttttta
     4801 ttttctaaaa tttctttaaa acttttatca ctttgtatat ctttacgact aaaacctata
     4861 gcatgagcaa caattgcata ggtattgtta taaagatgct cgctttcttt ccttaaagct
     4921 tcgatggctg tgtcactaaa cttaaccaaa ctactatcaa gatataaagg cttgtcttta
     4981 ttcttatctt taggagcttt tactatctta tttaaaaaaa gaacaatttg aggagtaaag
     5041 aatgaaaaaa gcacaacacc aattaaatta aacaaagtgt gaaataatgc tactttcaaa
     5101 gctatatctt ctatgtttaa tacaatggat aaaaaattaa gaaaatgtat aaaataagga
     5161 aaaataagca ctattaaaaa agctatacca aaattaaaaa tacaacttgc aaacgctaat
     5221 ttctttcctt caatattggt acttaaagaa gctaaaacag ccgttacaac tcctccaaca
     5281 ctagtaccta aagttgctgc taaggaattt tcaaactgat ttgtcctgca agtaaagcag
     5341 cgacaataat agccattgta gctgtgcttg attgtataac tcctgtaagc aaagcaccta
     5401 atcctaaaaa aacaaaaact cctttaaaac cagcaaaatc aaaacgagaa agatcaatta
     5461 tatgtttaaa attttcaaaa ccacttttaa tataatccac acccaaaaag aaaaatccta
     5521 taccaataaa aatattaccc aaacctttta aaacactatc tttttgaaag aaaaataata
     5581 ctccaataat caaaagtggg atagctagca ttgaaatttt aatatttgtc aaaccaacaa
     5641 tcagccaaga acttgccgta tttcctaaat ttgctccaaa aataatccct atgcccgcac
     5701 ccaaagaaat aagccctgca ctcaaaaaag aaatcgtaat aatagaaact aaagttgaag
     5761 attgcataat taaagtactt aaagtaccaa aaagtatact ttttatcttt gtatcggttg
     5821 acttcgctaa aattttttca agcaaaccac cactaaaagc tttaaaacct atacctaaat
     5881 tagtcattcc aataagaagt attaccactc ctgctaaaag attggcaagc tcgtcataac
     5941 gaattaaaat aaaaatcaga actaaagtaa aaatactcca tgaaataaat ttaaaatatt
     6001 ttaaagaatt tctttcctct tgcaatgcct aaccttttag tttttcaaat tcattcatca
     6061 gaaattctct taaattttcg gcttcttctt cgcctttttc tagatactca agcaataaat
     6121 tttctaattc ctttaaaaaa gaaaaaagtt cattttgcca gatactatcg tttttattgc
     6181 ttaaattcat ggtttgtatg aaagtcaact ctctgcttaa atccccaagt ttttctaaaa
     6241 attcatcttt ttgatcagaa ttttttaatg ctaaattagt attttggaca ttttctttaa
     6301 attgtctgat tttttcatcg attaaatcgc aaaatttcgg ataaacatcc attttaatag
     6361 gctctaaaag ggtttgctcg tctatattta aagtaagctt tttaacagca aaataaagag
     6421 ctaaaaaaga caaagctgct atgagtaaat aaattcctag cattaataac tcttaagggc
     6481 tagcattccg ccatctaaat tgatgctttc aagtcccaat ttttcagcta taaattcagc
     6541 tgcaaccatg cttctatggc cactacgaca aataaaagca agttttttac tttcatctct
     6601 tttgctttga aattcatcta aaaatttagc atttaaaagc ccttgattat catataaagc
     6661 cacacattgc gcattaggta aaataccttc ttcccattct aaaggagtac gcacatcaaa
     6721 aatttgatat gcgtttaaat cttgctttgt ccaaagactt gcagggatat tttctatcat
     6781 gaaaaagcct tattgataat ttttgcaagg cttgcattaa attcagcagg attatccact
     6841 cccatacctt cgcttagttt tgccatattt aaaactaggg ttgctatatc tgcactaaaa
     6901 ctttcgttgt ttttaagacc tgtaaaaata gcgtgctttg gattgatttc taaaataggt
     6961 ttgaaatttt gttcttgacc catttgtttt aagagttgtt gcatagcaaa atcaggttta
     7021 tttttatcgt aaactataca acttgggcta tctttcaagc gactggttag tcttacatct
     7081 tcaacttgat cttttagaag ttctttaaat ttagctacaa gtggagcaaa agtatttttt
     7141 tcttcatcgc ttagttcatt tttatcttct acttgattaa tggctacaaa tttcaaacct
     7201 tcaaattcta gcataggagt tactaaagaa tcaatctcat catccatgag taaaacttct
     7261 atattttttt gcttatattc ttcaagtaaa ggagaggttc ttaataaact ttcattattt
     7321 cctgctatat aaaaaatttc cttttgctcg ccttgaaggt catttttata ctcttctaaa
     7381 gagcgtaaat tttcaccttt ggtgctttta taaagcatga gttttaaaag actgtctttt
     7441 tctccgccaa aaccataaag tccttctttt aataccttac caaaggtttt aaagaaagat
     7501 aagtattttt ctttatcatt gtttttaagt ttttcaagtt cacctaaaat ctttttaacg
     7561 ctagcttctt taacaccttt taaaatttga ttttcttgta aaatttcacg gcttacatta
     7621 agtggtaaat cttctacatc gataatccca cgcacaaaac gcaaataagt tggtaaaagt
     7681 tctttatcat catcgctgat aaatacacgt tttacataaa gttttaagcc gctttgataa
     7741 tccacacgga ataaatcaaa aggtgcattt tgtggtatga aaaataagga attgtattct
     7801 aattttcctt cgcttttagt gtgaagataa agtaaaggtt tgtttgaatc atgaaaattt
     7861 tgctcataaa atctttcata atcttctgct ttaaggcttg atttttgcat tctccataaa
     7921 gcgttggctt tattgatttg agaaatttta agttcagttt ttccttcttc ttcgccctct
     7981 ttagcaggag taaattcttc tttttccatg aaaattggaa attgaatatg attagaatat
     8041 ttttctataa tgctttcgat tttataagta ttagcaaact catcatcttt taaatataaa
     8101 gtaatgcttg ttccttgttc ttctttgctt gcgtcattaa tctcataacc atttgcatcg
     8161 gaactccaaa gataagcttt atcatctaaa gcttttttac ttaaaacttc gattttgcta
     8221 gccaccataa aagcagaata aaaacctact ccaaattgtc ctatgagttg agaatctttt
     8281 ttagcatcac cgctcaaatt ttctaaaaag cttttagtgc cgctttttgc tatggttcca
     8341 agattgttga taagatcatc tttatccata cctataccat tatcactaat acttaaagtt
     8401 tttttatctt tatcaatttt gatttcaatt ttaggttcaa attttaagct tttatattta
     8461 tcatcactta cgcttaaaaa attaagctta tctaaagcat cgcttgcatt tgaaataagt
     8521 tctcttaaaa aaatttcttt attagaatat aaagaatgta tcataagctg taaaagctga
     8581 ttgacttcgg tttgaaattg cattttaact tcctttgtaa ttttttaaag tggtatttta
     8641 gcaaaaaata caaattctaa agtaaattta aagatttatt tgaaaattat aaaaccaagc
     8701 catgcggcaa ataagcaaag aaagacattt aagataatat ttaacgcaaa atgaggataa
     8761 tttccacttt gcaaaagaag taaattttga taagaaaaag tagaaaaagt tgtaaaagct
     8821 cctaaaaaac ctgtacttat aaagctttta agtaaaggag ataaacattt attttgtgca
     8881 taagaaaaca aaagtcctat gataaaagaa cccaaaacat taacaaaaag agttccaagg
     8941 ctgatagaat aaggaaaaaa tttattcact aaattaatag aaaacattct taagattgct
     9001 cctataaatc ccccaaaacc aacaactaaa agggtattta gcaaagctta gctctttctt
     9061 gatcgagtaa ttcttgcatt ttttttctag tgttttcaag ccatttttca tcatttgtat
     9121 cgactaaatc catacaaatg attttaagca ctccgctgct tgcactaaaa ctttttgtgt
     9181 ctaaaatttt tgcagaatcc acaattaaaa tgggttgaac tttaagattt aatttttcac
     9241 ttaaaatttt tgctccactt tgaaatttaa gcattttttc atttttagat ctagttcctt
     9301 ctggaaaaat agccaaaacc ctatcttcac taattctttc ttttgcttct tttaaaactc
     9361 gtaccaaatc acgcggattt tttctatcta tacaaagaag ttttggtttt ttcatagcaa
     9421 ctttgaaaat aggaatttct cctaattctt ttttggcaat ccagcataaa tttttaggat
     9481 ataattcttc taaagcgatg atatctaaag cactttgatg attcattaaa atcatctgag
     9541 cttgcggatt aaaagtgcca atgatttctt gtttataaga gatagtatat ctttgaaatt
     9601 tagcccaaat tttgcggatt ttccaaagtg tgttttgaga ttttgtaaag caaaaacaaa
     9661 aaatcaccaa agcaacactt aaaacaaaaa aaatccaaaa ataaagagct ttaatttttt
     9721 tgtaaatcat ctttattaac ccaacctatt tttccatcag aaaacagtac tttaatataa
     9781 ttttgtcttt tgcccaaaac ttctactttt tcatctgcat ttgccgtata aaaataagtt
     9841 gaaggctctg taggtaagat tttagcccta gaaccagcct tgataattgc attttgagta
     9901 ttggtatcta caagaaaact aagtacaaaa caaacaactg ccaaagccag aataatgtaa
     9961 ttttttctcc atacaaataa agctccaaat aaaaccgcta aaaaccataa ggtatattgt
    10021 ttataaatat ttaagtcttt atttacagga tttaaatcac tctgagtgct gatctcatcg
    10081 tcactaattt ttagttttaa atttatattt tcaagctttt tactgtcctt attgaaatac
    10141 gaaaattcaa aatttgtttt acttaatggc aaaatagcat aataaaaagc actagaagca
    10201 ttaaagtccc cttttaaatt ttcaatacct tgcttttgaa ttccttctat aaaaaagctt
    10261 ttaagatttg tattggttgc gtttagttct accatcataa tgatattagc atcatcaaaa
    10321 taactcgctt taactttttt aatttccaaa gaacttgcca caaggtgtga aaaatcttta
    10381 ttggataaag tattttcaaa tttgatagga ttaagattga tatcagcctc ttgaaaagct
    10441 tcattatttc taagaagttt gatagaaatt ttactcaaac tagcatttga atttttggct
    10501 tcaaaccata aagttgtttt atattcgtta ttgataaatt cccattttgc atctggattt
    10561 aaaaaagata agttagtttt ttctacgctt atgttaaaat caaattttgt attttccgta
    10621 gtgcgagcat agatcgtaat aggaaaaact tctccaacat ataccctact tggatattca
    10681 ttatttgtaa gaaccaaact ccctttagct acaaaaggat catctacatt gctttcaaag
    10741 tcattgtttt catcacttgg cggaatattt tgataaattt tttgttcttc ttggggtaat
    10801 ttttgtaatt ctttttgcat attttcatct tggccgctaa atacagaaat ttcacccctg
    10861 ccaaacaata caacaacact aaaaattaaa gttaataaaa ttttcaaaat aaaaagcctt
    10921 taagcatttt caaacctata tcattaccta ggactttttc acaagcacgc tcaggatgtg
    10981 gcatgagtcc aaagattttt ttgttttcat cacaaattcc tgcgatatca aatacagaac
    11041 catttggatt tggctcgtat tttaaagtaa taagatcttt atcttgcaat tcttttaaaa
    11101 tagcctcatc agcgtaataa tttccctctc catgggcaat tggtaaatta ataatttcat
    11161 cttttttgaa atttttcaaa aaggcattac cattagaaac tactcttaaa ttttggtttt
    11221 ttgagataaa actaagattg ttattatgct tcattgcacc ttttaaaaga ccgctttcaa
    11281 gtaaaatttg aaaaccatta caaataccta agatatatcc tccctttttt gcatgattaa
    11341 aaacaccttg catagcagga gcaagttttg caatagctgc acatcttaga taatctccat
    11401 aagaaaatcc gcctggcaaa acaactaaat ctgcatcaaa ttctttttct tcatgccaaa
    11461 taatctgcgt ttttactcca agtttttcaa aggcataagc tgtatcaaat tcacaatttg
    11521 tccctagaaa tctaataata gcaactttca ttttactctt tctcaattat aagctcataa
    11581 tcttcaatga cgctatttac caacaactct tcacacattt tttttacttg ttctttggct
    11641 aatttttcat ctttctcatc aagagaaatt ttgatttgtt ttgctatttt tacttcttta
    11701 acactattaa aatttaaaga atgcaaagct ttttccaccg ctttgccttg tggatctaaa
    11761 accccatttt ttaaagaaat atttacaata acttccatat ttttccttaa tttaatattc
    11821 tttttaaaac ttcttcataa gccattttta cattacctag atcttgacga aatctatctt
    11881 tgtccaattt ttcattacta aatttatccc aaaatctaca actatcaggg cttatttcat
    11941 cggctaaaac aagttcatta tctttagtta aacccagttc gattttaaag tcaatcagcc
    12001 ttaaattttt attgtcaaaa aatggagtta aaatagagtt aatctttcta gccatatttt
    12061 taatttcact aatttgagct tcattttgca ctaaatttaa aatcaaacaa tgctcatcat
    12121 tgataaaagg atcgcctaag gcatcatctt taagacaaaa ttccaccaaa gcaaaaggta
    12181 gcacagtgcc atctttaatg cccagtcttt ttgtaagaga acctgttgca acattgcgta
    12241 ctataacttc aataggaaca attttacatt ttttaaccac ttgttctgta tcgcttatag
    12301 tttctaccaa atgggtttta atcccatttt tttcgagcaa atgaaaaatt tcagtactga
    12361 ttttacagtt taatgcacct tttccacttt cattgcctct tttttctgca ttaaaagcag
    12421 ttaaatcatc tttaaactca ctaattagta aattttcatc atcagttttg aaaagttttt
    12481 taccttttcc ttcgtaaagc atttcttttt ttgtcatttt attgtccttg tttgatattt
    12541 aaaattttaa tagtatcaat agctgatttt aactgcgcgt catcattgat ttgtttttga
    12601 ctgattagat ttttattgtc tttattttct tgtttatctt cttttttatt tttatctatt
    12661 ttttcaagct cgctttctaa atgttgtttt aagtcgcttt cttttataga aaaaccatct
    12721 tcttgagtat ttactttacc tggaaaaact tcaatatcag gttttacacc cactgcttga
    12781 atagtacgcc cgcttggaag ataatatctt gcgatagtaa gccttaaagc ttcagtttta
    12841 ttaataggta tgatttgctg aacactacct tttccaaaag tattttcacc cacaataaca
    12901 ccgcgtttaa gatcttgtaa agctccactt acgatttcac ttgcactagc acttccacca
    12961 tttacaagca caaccaaaga agcattagaa attttgtttt taggatcggc tttatattct
    13021 tgattttcac ttgcgatgcg tcctttttga gaaacaataa cacctttatc tacaaataaa
    13081 tttacaagtc ctatggcttg atttaaaagt ccaccaggat tatttctaag atctaaaata
    13141 actcctttaa cattaggata ttttttaagt tctttacttg ccacatctac aacattttta
    13201 tcaaaatttg taaccctaag ataaagaatg ttttcatttt ctatcatttt tgcataaaca
    13261 ctttctatct taataatttc tcttgtaagt gtaacatcaa aaggttttgt tgtacctttt
    13321 ctaaaaatgg ttaaagtgat ttgagttttt ggcttaccac gcattttatc tacagcatca
    13381 ttgagattaa ttcctaaagt ggccttatca ttaattttta aaataatatc tcctgatttt
    13441 atccctgctt tatctgctgg tgttccttct ataggagaaa caactgttaa agcgccatct
    13501 ttcataccta cggttatacc aaggccacca aattcaccat tggtttgaat tttcatatca
    13561 ttaaaatctt tttcatttaa aaaagaagaa tgcgcatcaa gattgcttaa aagtcctgat
    13621 aaagatttat ccaccaaatt gctgatattt tgatcatcca catagtattg ctctactata
    13681 gcaagagttt ttgtaagctt atctaaagct tctaggcgtt tttgaacctg ctcttctttt
    13741 tgatcaactt tagcttgtaa atgacttgtt aaaaatagac ataaaataaa agtagtggca
    13801 aagcctgcaa gacccgcaaa aaatcgtttt gttttcaaaa taagctccat cattgagttt
    13861 tagtttaatt agtttaaaga gtaaatttta ataaaaattg cttaaaactt cgtaaataaa
    13921 tttaaattct taaaaatatg ttaaaataga ctaaaaattc caaaaagaaa gttaatacaa
    13981 tgtgccaaga aaaacatact catacacatt ctcaaaaaca tcttaaagca gtttgcaatc
    14041 gtctaagtag aaccataggg catttaagcg ctattaaaag aatggttgaa aatgacaaag
    14101 actgtagtga aattttaatc cagcttgctg ccgtaaaagc cgaagttaac aatactgcaa
    14161 aagtagtttt aaaagaacat ttagctcatt gtatggtaca tgctatagaa gaaaatgata
    14221 ttcaaagtat aaaagaacta aacaaggcta tagatatgtt tatgaaataa tctaaaatta
    14281 gtcatttgtc ctattattta aaaaatttta ctcaattaac ttgacattat atgactaaag
    14341 ttatataata gcaagtatat aaactaaata aaggataaaa catggcaaat atacaagatt
    14401 ttttaactga taatatgctt tcaaaccttg aaagtgcagc atctttagct atacattcta
    14461 aaaataatga agttgtacct ttacatcttt tatgggcttt aagcgtagat aatgcaagta
    14521 ttttaaatca aattttaaat aaattaaata tttctaaaga agccttagag cttgaaatta
    14581 aaagcagaat ttcaaaactt gcaacgagtt caaatgtaaa ccgtgaaaat atacgctttt
    14641 ccaatgaact tataaattca ttagaaaatg ctaaaggatt aatgagtgct aatggagata
    14701 gttatttaag tgtggatact tggcttataa gtgaaagtca aaaaagtcct attaaagaaa
    14761 ttttggcgca atttttagat ttaagagaat ttcaaaaaga gcttgaaagt ctaagagcgg
    14821 gacgaaaaat ggatagcaaa acaagcgatg aaactttaga tagcttaaat aaatttggta
    14881 tagatttaac cttaaaggca agcgagggta aacttgatcc tgttataggc agagaagaag
    14941 aaatcgaacg tttaatgcaa attttaatac gcaaaaccaa aaacaaccct atacttttag
    15001 gtgaaccagg cgtaggaaaa acagctatag tagaagcttt agcacaaaga attattaaaa
    15061 aagatgttcc aaaatctttg caaaataaaa aagtcatcgc tcttgatatg agtgctttaa
    15121 ttgcaggtgc aaaatacaga ggagaatttg aagatagatt aaaagctgtg gttaatgaag
    15181 tgataaaaag tgaaaatatc attcttttta tcgatgaaat tcacactata gtaggagctg
    15241 gagcgagtga aggcagcatg gatgcggcaa atattttaaa acctgctctt gcaagaggtg
    15301 aactccatac cataggtgca actactttaa aagaatatcg taaatatttt gaaaaagatg
    15361 cagccttgca acgccgtttt caacctgtaa atgtaggtga gccaagtgtt aatgaggctt
    15421 tggctatgtt aaggggtata aaagaaaagc ttgaaattca tcataatgta accataaatg
    15481 atagtgcttt agtagccgca gctaaacttt caaagcgtta tataacagat cgttttttac
    15541 ctgataaggc cattgattta atcgatgaag ctgcagctga actaaaaatg caaattgaaa
    15601 gcgaaccaag ttctttaaga aaagtacgca aagatataga aactttagaa gttgaaaatg
    15661 aagctttaaa aatggaaaat gatgaaaaaa atcaaaaaag actcgatgaa atcgcaaaag
    15721 aactagctaa tttaaaagaa aaacaaaatg ccctaaattc acagtttgaa aatgaaaaaa
    15781 gtgtttttga tggcataagt gctaagaaaa aagaaattga tctgcttaaa aatgaagctt
    15841 ctttggctaa agctagaggt gaatttcaaa aagcagccga gctagagtat ggaaaaattc
    15901 caagtcttga aaaagaagta gaaatcttag aagataaatg gaaaaaaatg agtgaaaatg
    15961 gagttttact taaaaatcaa gtggatgagg atttggttgc tggaatttta agcaaatgga
    16021 cgggtattag cgtgcaaaaa atgttaactt ctgaaaaaca aaaattctta gaagtggaaa
    16081 aacatttaaa agaaagtgtc ataggacaag ataaggcctt aagtgcttta gctagagcca
    16141 ttaaacgtaa caaagcaggg cttaatgcgg acaataaacc tataggaagc tttttatttt
    16201 tagggccaac aggggtagga aaaacacaat cggctaaagc tttggcaaaa tttttatttg
    16261 atgatgaaaa agcaatgatt cgctttgata tgagtgaatt tatggaaaaa catagtgttt
    16321 caagactctt aggtgcgcct ccaggatata taggacatga agaaggtgga gagcttactg
    16381 aagccgtacg aagaaaacct tatagcgtac ttttgtttga tgaagttgaa aaagcacata
    16441 aagatgtatt taatgtgctt ttagggattt tagatgatgg tagagcaacc gatagcaaag
    16501 gtgtaacagt ggattttaaa aataccatta tcattctaac ttctaatatc gcctcaagtg
    16561 ccattatgaa tttaagtgga aaagaacaag aagatgcggt aaaaaatgag ttaaaaaatt
    16621 tctttaaacc tgagttttta aaccgtttag atgatattat cacctttaat ccacttggaa
    16681 aagatgaagc ttatgaaata gtcaagcttt tatttaaaga tttacaaatg agcttagaaa
    16741 acaagggaat aaaagcaagt ttaagcgaaa atgcagccct tttaatcgct aaagatggtt
    16801 ttgaccctga ttttggtgct agacctttaa gaagagctat ttatgatctt atagaagata
    16861 aattaagcga tatgatactt gctgatgaac ttcatgaaaa tgatagcatt atcattgatg
    16921 caaaagatga tgaaataatc atcaaaaaag cttaatcatt ttgaaagtag atctttctac
    16981 tttcaaaata taatctcgct ttcattaaat ttcatatttg cttttggtaa tggtgatttg
    17041 gtggtataat aagcactttc tcctttataa tttccacgat aaactccatt aggaatgcta
    17101 aattttctag ttgtatcagg gaatttttct atatattgag ttaaaaattc tctaaacaca
    17161 ggagcagctg ttctagcccc accttctgta taacgcatag gcttgttgtt atcatttcca
    17221 taccaaatga ttgcttctat ttcaggcgta agtccacaaa accaagcatc aacactttta
    17281 ttcgttgttc ctgtttttcc tgctatttct atatctttta ctcttgcatt acgccctgtg
    17341 cctttttcaa caacatttct catcatatct aaaaccagaa aactttgcgc ttcatcgctg
    17401 actttacgct catttgagtt aaattccatg atggttttac cggttttatc ctgaacttgt
    17461 ctgataattt gaggatcttt aatcgtacca tagttcccaa acatggtata aaatttcgaa
    17521 tactccaaag gagaaatacc aaaacttccc aatacgattg ataaattagg cggtatatct
    17581 ttaaatccaa attccattag cttagagtaa agaacatcca gccccatatc aagtgcgaga
    17641 ttaatggtag ctaaatttct tgatcttgtt aaagcttctt ttaaggtaat taaacctaaa
    17701 aatttacccc cttcattttt aggtttccaa tcctcattat tacccgctcc accttcaaaa
    17761 attctagaaa tatcagcaat ttcactcata ggcgaatatc ctaaattaat cgccacttga
    17821 tacacaaaag gtttaaaaga gcttccaggt tgacgcatac tttgagtagc acggttataa
    17881 ttactttttt cataatcaac cccgcctacc aaagctaaaa catcaccact ttgatgattt
    17941 accacgacca tagctccgtt taaagtgctt aaatttgcat ctttatcgcg ttttactatc
    18001 tcatcataac caaattttaa agcattttgc gccatatttt gaacatctaa gtctatattt
    18061 aaaatgattt tatatccacc tgtttttaag tctttgatat tagggcttaa ttgtttaatc
    18121 acttcatcta caacataagg agcagcattt tgagtaagcg tatcatcata aacttgcgga
    18181 atttctttaa tggctgtatc ataatctgct tttgaaatcc aacctagatt atacattctt
    18241 gaaataacat tatttgctct tgagatggaa agatctaaat gctttgtagg atcataactg
    18301 ctaggtgctt ttggcatacc tactagcata gcaatctctt taaggcttag ttcatttaaa
    18361 tttttatgaa aataccccaa agctgcggtt tttactccat aatacccatg tccaaaaaag
    18421 ataaaattta aatacctttc taaaatttgt tccttggtta aaatggtttc cattttataa
    18481 gcaagcaaag cttctcgaat tttacgcgta atagtttttt ctggagttaa ttccgtgttt
    18541 ttaataaatt gctgagtaag agtggaagct ccttccatgg tttttccacc actttttata
    18601 atttttacgg cagctctaaa aatggcgtcg atattaactc cattatgttc aaaaaagctt
    18661 gtatcttcta tagcaaccaa agcttctata aggcgtggag gaagctcttc ataaggagca
    18721 taaaaacgat gttgttcaaa aatattagcc acaagcttac catttctatc ataaatttgt
    18781 gttgtaagag gaggtttgta ttctttaaaa gtataaccct cagtatcaac acttgtgaaa
    18841 agataagccg cataaataaa tccagctata aacaaaagag taaaaaatga aaaaatatat
    18901 tttaatattt tcataaataa gcctttaaag tttggatatc aagccctaaa gcagtgctta
    18961 gatttcctac ttgttgggtg atgaaatttt gatgaaaacc ctcacacata atacaacccg
    19021 ccttgccttt ataaagatca ttttctacat aatctcttaa agcattttca tcaaaatttt
    19081 taaaataaag cgtagttttt gaaagagaaa aaactctttt ttcaggtttt acaagcaaaa
    19141 aagccgataa aatacttgca tactttccat tttgcaaggc aagcatttca taagcttctt
    19201 ttttatcctt tgttttggta agaatttttt catctataca aactatacta tctgcaaaaa
    19261 gcaaattttg gttttgaaaa tctttgccta aagtacttaa aaattgtctt tctttttcaa
    19321 gaactatttt ttgaacatat aaaaaaggtg aaatattttt atttaaattt tcatcataat
    19381 caaaactaac ttgcttaaaa tcaatctttg cggttttaag caagttagcc cttgaaatgg
    19441 aatttgaagc aagaattaac attaaagtgc tttttctatc gtttctaagc tttgttttaa
    19501 agcttcatca attttgctta aatcttttcc acctgcagta gcaaaatcat ctcttccacc
    19561 gccatttccg cctaaaattt gcgccgcttc tttaaccaaa gctcctgctt ttaaaggtgc
    19621 atctttaaca ccagctgcta aagtgatttt ttcatctttc acttggataa gtaaaatcac
    19681 cgctttagca aatttgtttt taaaatcatc aatcatagct ttaatatcgc cattatctat
    19741 acgctttacg caaatttcaa caccttggat atttttagaa tcaagctctg ttttacttga
    19801 gtttttaagc tcatttttta aacttaaaat ttcattttta atttttttaa ccccgcttaa
    19861 aatatcatta tttttaagtt catcttttac tttagaaagt tcttcgagtt gattttttac
    19921 aaattctaaa gccgctttag aaactacagc ttcaatgcgt ctcaccccag cactcacacc
    19981 actttcttta actatgtaaa aacttcctat ttgagcagta tttttaacat gagttccccc
    20041 gcaaagttct ttgctttcac ctaaagttaa aacacgcaca ttgccttggt atttttcatt
    20101 aaacaatgct atagcaccgc tttttttagc ttcttctaaa ggcatatttt ctaagatagc
    20161 ttcgcttgag tttataatca tttcattgac tcttttttca atgctttcta gctcttcttt
    20221 gcttaaagct ttatgatgag taaaatcaaa tcttagttta ttgctttcaa ccaaagatcc
    20281 tgcttggctt acatgagaac ctaaaatttc tcttaaagca tggtgtaaaa gatgagtggc
    20341 tgagtggtgg cgtgcgattt gctctctttt ttctgtattg attcttgcat gaactatatc
    20401 gccaactttt agttcttcgc ctgcttttat aaagctaaga ttgagattaa aaaacttttg
    20461 cgtatctaaa acttcacgct tagttataaa cccactatca gcactttgtc ccccacttgt
    20521 tgcataaaaa ggtgtgtttt caagcatcac ccaacccgca tctttaaggg tggaaacttc
    20581 tttaaaatct tcatctaaaa gggctaaaat tttactttcg cattctgctt tttcataacc
    20641 tacgaaatga ttttctccaa atttttcaag taagttttta aaatctccgc ttgcagtttt
    20701 atctccactt cctttccaag aagccttagc gcgtgctttt tgctcattca tgaaaagttc
    20761 aaatttttct tcatcaactt taagattttt ttctcttagc atatcagccg ttaaatcaag
    20821 cggaaaacca taagtatcat aaagcttaaa ggctacttct ccgctaaaaa tttctttagt
    20881 gtttttaagc tcttcattaa aaatttcaat cccattttct atagtgctta aaaatctttc
    20941 ttcttcaagg cgaatttgtt cttttataaa gtcttttttc tcattaagat aggtataatg
    21001 tccgcccatt aaatcgcaca caatatcaac tagtttatac ataaaagctt gtttaaaacc
    21061 tagcaaatat ccatgtctta aagcacgacg caaaatacga cgcaaaacat aacctctacc
    21121 ttctttatca aaacttaccc cttgtgcaag caaaaataca cttgatctta tatgatcagc
    21181 tatgactcta aaacttgctc cgctttcata aacataagtt ttattacaaa gttttgaaat
    21241 ttcattgatg attggcataa aaagcgagct atcaaaattg ctaaatttac cttctttaat
    21301 tgcagttact ctttcaagcc ccattcctgt atcaatgctt ggctttggca gtgggctaag
    21361 cactccatca gcacttcttt cgtattgcat gaaaacaaga ttccagattt ctaaaaatct
    21421 atctccatct ccgcccatat aatcttcgct tgagttaaaa tgctcttgtc cttggtcata
    21481 aaaaatctca ctacaaggac cacaaggacc agtatcgccc atttgccaga agttatcttt
    21541 atcgccaaat ttgtaaattc tttctttttg aatgtgtttt tgccatagat taaaagcttc
    21601 atcatcgttt tcatgcacgg ttacataaag tctatcttta ggtagtttta aaacttcagt
    21661 tacaaattcc caagcataag ctatggcttg ttctttaaaa taatccccaa agctaaaatt
    21721 cccaagcatt tcaaaaaaag tatgatggcg tgcggtatat cctacattat ctaagtcatt
    21781 gtgctttcca cccgctctta tacaagtttg acagcttgtt ttgcgtggag ggtttgggcg
    21841 tggaatttct cctgtaaata tacttttaaa aggcaccata cccgcattag taaaaagtaa
    21901 agttgcatca tcaggaacta aaggacttga cggggttatc tcatgtcctt ttgatgcaaa
    21961 aaaatccaaa taagcttttc taatatccat gaattttcct aaagaaattt ttataaaaac
    22021 atatcatacc aaaattactt taaattaagt aaaactaaaa tacaataaac atttttattt
    22081 aattttattt ctctaaggtt ttttatgaat tttatcaatc ttcaagccca atatctcgca
    22141 tacaaagatg aaatcaatgc taaaattgaa agcgttttat caagctcttc ttttataggc
    22201 ggtacaaagc ttaacgaatt tgagcaaaat ttagctcatt ttttaggtgt taaacacgct
    22261 ataggttgtt caagtggaac cagtgcttta tatcttgcct taagagcctt agatattggc
    22321 aaagatgatg aagttatagt gcctagtttc actttcatag caacagctga agttgtggcc
    22381 ttagtaggcg caaaacctgt ttttgtagat ataaatttat caaattacaa tcttgatttt
    22441 gaagcagtac aaaaagcaat aaccccaaaa actaaagctg ttatagcagt gagtatgttt
    22501 ggacaaatga gtgatttaag ggctttagaa gaaattttaa aagataaaaa tatcactttg
    22561 atcgaagatg gtgcacaaag ttttggtgca agtttcaaag gagaaaaatc ctgctctata
    22621 gctaaaattt catgcacaag cttttttcct tcgaagcctt tgggagctta tggcgatggt
    22681 ggggctattt tttgccatga tgatgaaatt tctaaaaaaa taagaatttt actcaatcac
    22741 ggacaaacac agcgttataa acatgaattt ataggtataa acggacgcct tgataccttg
    22801 caagcggcga ttttaaatgt taagttaaaa tacctagaaa aagaattaga caaaagacaa
    22861 aaattagcac aaatttataa tgcaaattta aaaaactgcc aaattccgca aattgatcca
    22921 aatgctttta gcgcttatgc acaatacagc gttttagttg aagatagagc tagtgtattg
    22981 caaaaatttg aaaaagctaa tataccttat gctatacact atccaacccc tttgcataaa
    23041 caaccttgct ttagtgagtt ttcaaattta gaacttaaaa attcagaata cgcaagcgaa
    23101 cacatcttat ctttgccttt ttcacctttt ttaagtgaag aagagcaaga gcaagttatt
    23161 tgtattttta aagattgatt ccatgaaaat aggtatcata ggccttggaa aaatggggca
    23221 aaaccactta aatgaactta gtaaaaattc tcattttaaa cttaatgcac tttttgatct
    23281 ttgcaaaaat ccaaacctaa atatttttga tgatattttt tatgatgatc tggataaatt
    23341 tttaaatcaa aataatgata ttatcatcat agcaacacct acaaattcac atttaacaat
    23401 agcaaaaaaa gtttttaaac aatgcaaatg cgttttaatc gaaaagcctt tagctctaaa
    23461 tttaaaagaa atagacgaaa tttcaaattt agctaaagaa tacagcataa aagtaggtgt
    23521 aggtttttgc gaaagattta atcctgcggt tttagcccta aaaaaagagc ttgaaaatga
    23581 agaaattatc agcattaaca tacaaagatt ttcaccctac ccacaaagaa tcagcgatgt
    23641 agggattttg caagatttgg ctgtgcatga tcttgatttg ctttgttttt taagcaaaca
    23701 agaaataaca aaaaccaatt tgcttaaaaa atacacccaa gatcaaacaa gagaaagtga
    23761 aagcattatt ctatgtgagc ttgaaaaatg tattgctagc atacatcaaa gttggaatag
    23821 cacacaaaaa ctaagaaaaa ttcatcttat tactaaaaat catttttatg aagccaattt
    23881 aaatgacttt tctttattaa aagatggaaa ttttatagaa cttactcaac aaagtccact
    23941 tttttcagaa cacgaagctt tgttaaaact tatcgataat caacccaatc atttagccag
    24001 cacgagcgat gcttacaaag ttcaagaaat tttagaaagg tttgcgtgaa attagtttta
    24061 tttttaaata tgggcggagc tacgaattta caagattgtg aagttttttt aaaaaatatg
    24121 tttaatgatc cttatatttt aggaatcaaa aatcgatttt taagaaaatt tgtagcatgg
    24181 atcataacaa aggctcgcgt taaagccatg caagaaaact ataaaaaaat gggcggaaaa
    24241 tcccctttaa acgaacttac tcaaagcctg tgtgacaagc ttaatttaaa acaagatgaa
    24301 tttaaatttg attttgtaaa tctttatgtt cctccttttg ccacagaaat tttgcaaaaa
    24361 tacactttaa atgcaagtga tgaaatcatt ctttttccac tttatccgca ccattcttgc
    24421 accacagtaa cttcatcttt agaagttctg caaaatgaaa tttcaaagca aaaaattcaa
    24481 gcaaaagtaa aaactataga tattttttac aaaaatgagc tttataacga gatgatagtt
    24541 tcgcacattt tggctaaaaa aagtaaattt gatgccaaaa ttttgatttt ttcagcgcat
    24601 tctttaccac aaagcattat tgataaaggt gatttatatg aaaagcatgt aaatgatcat
    24661 gtagaaattt taaaagaaaa gctaaaagat cattttgatg aatttatttt agcttatcag
    24721 tctaaactag gccctgtaaa atggcttgag ccaaatacga gcgatatttt ggcaaattta
    24781 gataacaaag ctttgattta tcctatttct ttttgcatag attgttctga aacgattttt
    24841 gagctaggta tggagtataa acatttagca aagtgcgatt atgatttaat cacttgccca
    24901 aatgatagtg atgaatttat ccactttatt ttaaagtatt tatctgattt taattaagaa
    24961 tgattttgaa gtccttgttt atgattacaa ggacttttta gtaaaaattt agccaactaa
    25021 gctaaagtat aagctttttc tccgtgcaaa ctcacatcta agcctttttg ctctacttct
    25081 tcttttactc ttaagtctgt aaaacaagag ataatcttaa aaataacaaa gcttataaga
    25141 gctgacaaaa ccacacaaat cacaatagca aaaatttgct cttttaaaag ttccaaactt
    25201 ccgctgataa aaaatccctc gccaagtgca ttttgggcaa tcacattagg atttacttta
    25261 gcacttgcaa aaagccctgt ggcaattcct ccccaaatac ctccgattcc atgtaaagaa
    25321 aaggcatcta aagaatcatc ccatttgagt ttgtatttga taaaacttaa accaaaataa
    25381 caaaacacag aagacaaagt ccctataaca agagaagcat aaatatctac ataaccgcaa
    25441 gctggagtaa ttcccacaag ccctgctaca agcccactaa gtccacctaa aatagtcggt
    25501 tttttatgga tgagccactc aagtaccacc caagataaaa agccacaagc tgctgatata
    25561 atacttacta taaaagcatt gatagcaata tcattcattt cgccagcact tccagcatta
    25621 aaacctaacc atcctataaa aagcaaaatc gcacccaaga aagcataagg aatagaatgc
    25681 gcgtttttat cctcatcatc actttttcta gcgcctacca tcaaagctcc tacaagtccg
    25741 gcaaccccag agctgatatg cacaacaccg cccccagcaa aatcaagact tcctctttta
    25801 agcaaaaatc cctcactgct ccaaatcata tgcgctaaca catcataaac taaagtactc
    25861 caaaaaagta gaaatatcac caaaacaccc agtttgattc ttcccaccaa agagcctgtt
    25921 ataatagcag atgcaataag tgcaaacatc atttgaaaaa tcacaaaaag aatatttgga
    25981 acgcctgaag cgttgtatcc gctaataccc tctaagagga aattctcgaa atttcctaca
    26041 agcccaagtc cttcatcttt accaaaagaa agactaaatc caagcactac ccattgtaaa
    26101 gtaataacac caaaaacaat aaagcaattc attatggtat tgagagtatt tttacttctt
    26161 accatacctg aataaaacat tgccaaagct ggagtcataa gcaaaactag caaagtacac
    26221 aacacaataa aacttgaatt tatcgcattc atttacctgt cctttcttac aaaatttaat
    26281 tgcgagataa ttatatttaa aatggtttaa aaaaatataa atttaagaaa tattttatat
    26341 atttttttta tcaaaattta tttttttatc ttaaattact ataaataggt attttaaaaa
    26401 atattttact tctctataat tcaaatttac tagcattaaa ataaaaattt ggggctaaac
    26461 caaaacaata aaaaagaatt cttgcaagat aataaagaaa attttgatga tttggtaaaa
    26521 gtttttttta aattaaaagt agaaattatc tagtattaaa aaagcaattg cgttttaaaa
    26581 tagcctaaaa gctcttcttt ggctttgaag atatcatcag tgtttagctc aaaatctatt
    26641 ttttgtggct ttttataact cttatcataa taagccaaaa gcaaagcaat aagcctttgc
    26701 cattctcttt gctcataact ttttagcaaa tcctgacgaa aatttacact gatataagga
    26761 ctgatcttag caagacattc tttaaatttt aaaggagtca ttttttcttg atagatcttt
    26821 tgtatcctgt ctatgcgctt ttctaaagaa caaaaacaat gaattttaaa tgctttttgc
    26881 attttttcat aaagctttaa aggtaaaact atttcaccta ttttacgact ttcgctctct
    26941 ataaagataa aatcttttaa agagtttaaa gtataaaaaa ggtttgcttc aaaagctttt
    27001 tgcgtaggtt gttttcctaa aatatcacca aaagatgatc ctagatgatt tgccattttt
    27061 tctaaattta aatgatgggg caaaagctcc aaaagttctg tttttccaca gcctgtatta
    27121 ccacaaagag caaaaaaatc taaatttatt tcattatcaa aataatgcgc caaaaaactt
    27181 ctataagctt taaagccacc ctttaaacgc accactctat agcccaattc gctcaaaatc
    27241 actgcaatag attttgaacg caaaccccca cgagagcagt aaattccgat cttatctcct
    27301 atacggaatt tgtgggcaag ctctaagata tgctttgaca tattttgaca aatataactc
    27361 gcacccctag ccttagccaa agcttgattt tttttataaa ttgttcctat ttcttgatat
    27421 tcttcatcat ttaaagcata aaaatttaaa gctcctatca aatgagaatg caaaaattct
    27481 ctagggcttc ttgcatcgat taaaagagag aaattttctt tttgaaattc tgcaaaatct
    27541 acttcattta acatttttaa acgccaaaac aagtttttga taaacttgtt ctatattggt
    27601 accacaaacc ctagtctctc ctatagtggt gataaaatta gtatccccta cccaacgcgg
    27661 cactaggtga taatgacaat gaggagctat cccagcaccc gcatctttac ttaaattcat
    27721 accgatattt accccacctg catggagttc actttttaaa attcttactc ctagacgcac
    27781 aaattgactt atctcttgcc aagcttcatc acttaaattt tctatatgct cttcatgcaa
    27841 ataaggtatt atcataaaat gccctgcaga ataaggatag cggttcatca cgccaaaaca
    27901 atacttagct ctaaaaatca ctcctaattc ttcgtcgctt ttgattttat tagcacaatc
    27961 acaaaaaggg cactcgctct tttctttttc aaaatactca cttcgccatg gtgcatacaa
    28021 atactgcatt tttatccttt taaagcaagg ctttcaaagc ctctccttca tcgttttgac
    28081 gcataaaata ttctccgatt aaaaaagcat caacgcctaa attttgcaaa tgccttaaaa
    28141 aatctttatc ctctaaaccg ctttctgcga taataatttt tgaatttgga atttgtggga
    28201 tgagtttttc gcataaattc atatccatag aaaaatcatc caaattgcga tgatttatgc
    28261 ctataatatc agctcctgaa aaaatcgctt tgctcaaatc ttctttatcg tgaatttcaa
    28321 ccaaagcctc aagacctaaa tgtcttgcaa actcaagcag ttttttaagc tctttcatgc
    28381 ttagcatttt agcgattaat aatacaaaat ccgccccata aaccaaagct tctaaaattt
    28441 gatactcatc aaaaataaaa tcctttcgca acaaaggagt gtgcgtataa cggcgtatca
    28501 tgctaaggta ttctaaactc ccttgaaaaa aatgcggttc tgttaaaact gaaatagcag
    28561 cagctccatt tttttcgtat tttaaagcta tatctaaagg atcaaaattt tcccttataa
    28621 cccctttact tggactagct tttttaacct ctgcgataat tcttacttca ttttctattc
    28681 tttttaaagc agctttaaca tctttaggaa aaaaaggatt cgacgctaaa gatcgtccca
    28741 acatatcata aggcagttgc gccttacgct cttttaaatc ttctttagtt ttttcaaaaa
    28801 ttttatctaa aatcatggtt taatacacgc ctttattgct tttgcatgag ccttgctctc
    28861 atcagaattt gcaaattctt tatcctctaa agtttgcttc aaaatttccc aagccttttt
    28921 acaatcacct tgtttataat acccccacgc taaagaatcc aaatagtata aattttgagg
    28981 ctcttttttt aaggcaagtt tcacaagctc tatacctttt ttaacatcta aatcataatc
    29041 tataagcaaa tatccatagt agtttaaata caaagcattg ctatctttat cgatagcttg
    29101 ttcgaatttt tcttttacag aatcaattac ttttggagtg atttttttag cttcatttgc
    29161 agcttcaaat tcaaaaactg ccgctcgtag aagatattct ttattttttg ttttatgata
    29221 aagagctaaa ctcatttttt tagcatcatc aaagcgtttt aaattctgat acaaagcgag
    29281 tttaatgtca tcatctaaat catactgcaa agaaattttt aaagcttctt ctgttttgcc
    29341 ttgagaattt aaaagctcaa ctaaagccaa tacaaaactt ttatttttgg taagttgata
    29401 aagctcttta tatatacttt ttaaagcttc gatatttttt tcatcaaaat aaattttagc
    29461 aagcaagacg caagttttga gagtgcaacc attggttttt cttgaaaatt ctaaaacatt
    29521 tttaatattt aaagtatcat tcaaaatcgc ataaattcct atgagtttaa ataaaatttc
    29581 ttcattttgc acttgattat aagcagatct atagtatttt gtagcatttt ttaaatcatt
    29641 ttttttaacc aaaatatcac cataaagctc taaatttcta ggatcactat ccttttttgt
    29701 taaaagctct ttcataagtt tttgagcatt gttgatatca tttgaattta aagcataaag
    29761 agcactaagt cgcttaagat tgtcattttg atttaaataa ggctttgcta gattatctaa
    29821 ctctgcttgc ttgtcaagat tgtttgctaa agtaagtaaa aatgcatttt ctaaaaaatt
    29881 agtattatta taatcttgat aaagacttaa aaattcatct ctggcttctt tgtattgttt
    29941 ataatactca taattataag ccttcataac ccttaaatca aaatcattgc ttttatattt
    30001 tgtataatca ggataaacaa cattgatttt tgaacttcca caagctgcca aaaaaaaggc
    30061 tactaagaca aataacaaat acctatacat tctttttcta attccttttg atgtgtttta
    30121 aaatattccc aaaatggaaa agttctgcat tgttttggac gaaaatcgta gatactacaa
    30181 tttctttttt gagtatcaaa aaaaatgcaa gcaaaaccat cttcacattc gacttcctta
    30241 aaactcattt taaagcccac ttttctcaag tatttttcag caaattcttt gctttctaaa
    30301 tttaaatgct ttcttaatgc ttctaattct tccttgctcg caaaaatatt gccactttct
    30361 ccagtgcaac actttccacc gcatttctca caagcatttt catcaaaagc ataagaaaaa
    30421 tttttatcaa atatcataac tttttaacct aaatcttaag tgaatttctt gcatttgttt
    30481 gcttaaaatt tcattttcat atacaaaaaa aggaggtaaa atctcacaag gcgattttga
    30541 accttttttt acctgtatca aaacaagtct tgcttttttg ttttgatgtg tatgtacaaa
    30601 gcaaagcttt gttattttca ttttcatatc ttttaaaata aaacaaattt catctaaagc
    30661 taaagcttca tagcaaaaat acaaagcacc atttggctta agcatagaat ttgttttagc
    30721 taaaaagcta tgcaagggta aaaattcctg aaatttactt atagctttat gctgatcttc
    30781 actcttgtaa gctccttgtc tataaaatgg aggattgcag actatgaagt caaatttttt
    30841 tatgatttga aattgattaa aatcatcatg aaaaatatcg ccttgtattt tgttggattt
    30901 taaatttttt tcaatcaatt ttatattttc tttttgaata tcaatcaaag ataaacttaa
    30961 atttgcaata ttttttttaa gtaaaatacc tatgatacca cagcccgcac ctacatcaaa
    31021 aacagcgcct ttaattcctt gttttaaaat aaaatcagct aaaattaaag aatcactatt
    31081 gtaacgatac ccttgtgata attgtgctag cgtaatcaga tctgacatat attttaatgc
    31141 gttggaattt taatgcgttt tggagattgt tctttaaata tatttcgttc ttttgttata
    31201 ttattatctt ctttaaaatt tactgggctt tgtgctgcca aaaaagaaat tacaaaagtt
    31261 ataaaaaaag caatttttat cataataaca ccccataaaa tggtgtccac ggcgagattc
    31321 gaactcacgg cctcaaaatt aggaattttg cgctctatcc tgctgagcta cgaggacaga
    31381 aagcgggaaa aatcccgcta aaaatttaac cgtttctttt tttgatgatt tcatccgcaa
    31441 cgtttttagg aacttcatca taatgatcaa attccataga ataagtcgca cgaccttgag
    31501 tttgacttct aagatcagtt gaatatccaa acatttcagc caaaggacaa aatgctgtga
    31561 tgattttatt tccaccacgc tcatccatgc tatttacttg accacggcgt ttgttaagat
    31621 ctccaataac atcacccatg taatcttcag gagtttctac ttcaactttc atcataggct
    31681 ctaagatcac agcacctgct tttctagcac cttctttaaa gcccatagaa gcagcaagtt
    31741 taaatgccat ctcagatgaa tccacctcgt gataacttcc atcataaaca gttactttaa
    31801 catcttccac aggataacct gctaaaacac cattttgtaa tgcttcttga acacctttat
    31861 caactgcagg aatgtattct tttggaatta ccccaccttt aatatcatta acaaattcat
    31921 atccactacc tggctcaagc ggttcaaggc gtaagaatac atgtccatac tgaccacgac
    31981 cacctgattg tttagcgtat ttgtattctt gttcaacagt ttttctaata gtttcgcgat
    32041 aagcaacttg tggttgacct acttcagctt caactttaaa ttcacgaagc attctatcaa
    32101 cgataatttc aaggtgtaac tcacccatac ctgaaatgat agtttgacca ctttcttcat
    32161 ctgtagaaac tctaaaactt ggatcttctt gtgctaattt atttaaagca atagacattt
    32221 tttcttgatc agctttagtt tttggctcaa ctgcaacaga aataactgga tctggaaaat
    32281 ccattctttc aaggattacc ttatcttttt cacttgcaag agtatcccct gttaaagtat
    32341 ctttaagtcc tacaacagca ccaatttcgc ctgcgtaaag cactttaatc tcttctcttt
    32401 tgttagagtg catttttaac aaacgaccaa ttctttcttt tttatcttta gttgagttat
    32461 atgcataaga accgctttct aaacaaccgc gataaacacg cacgaaagta agttgtccta
    32521 caaatggatc tgtcatgatt ttaaatgcaa gtcctgcaaa ctcaccatca tcagttgatt
    32581 ttacagaaac ttctgtgcca tcttcatatt cacccttgat atttgccact tcatcaggag
    32641 ctggcaaata agccacaaca gcatcaagta aaggttgaac ccctttattt ttaaacgctg
    32701 taccgcaaag cataggaacg atagaaagac ttaaacatcc tgctttaatc cctgttttaa
    32761 tctcttcaag gcttaattct tctccgccta aatatttttc catcaactca tctgaagttt
    32821 cagaaactgc ttctatcatt tttgtgcgat attcttctgc cttttcttta agttcagctg
    32881 gaatttcttt ttctacataa tccgttggct tagtatcatc ttcccaaact aaagctttca
    32941 tagttacaag atcgattacg cctttaaaat tatcctcagc accaattgga atttgaagtg
    33001 gaactggatt agcttttaaa cggttgcgaa tttgatcttc tacattataa aaatttgcac
    33061 cgattctatc cattttattt acaaatacta ttcttggaac accgtattta tttgcttgtc
    33121 tccaaactgt ttcactttga ggctgcaccc cacccactga acaaaatacc gcaacagcac
    33181 catcaagaac acgcatagat ctttcaactt caattgtaaa atccacgtgg cctggagtgt
    33241 caataagatt gatttgatga tctttccaaa aacaagttgt agccgcagaa gtgatagtaa
    33301 tcccacgctc tttctcttgt tccatccagt ccatagttgc agcaccatca tgaacttcac
    33361 cgattttatg actcatacca gtaaagaaaa gaattctttc agatgtagtc gttttacccg
    33421 catcgatgtg agcagcaata ccgatatttc taactttttt taaaggagta cttcttgaca
    33481 tacacactcc ttcttaccaa cgatagtgag caaatgcttt atttgcttca gccattttat
    33541 aagtatcttc tttcttctta aatgaagcac ctttgctatt tgctgcatct aaaagctcag
    33601 ctgcaagttt atcaatcata gttctttcgc ttctttttct tgcaaaagaa ataatccaac
    33661 gaatcgccaa agcttgttgt ctagcagggc gaacttctac tggaacttga taggttgcac
    33721 cacctacacg acgagatttc acttctaata aaggcttaat attttcaatc gcatcattaa
    33781 aaatatcaat accttttttc tcgccacctt ttttatcaat agcttccaaa gcaccataca
    33841 taattgttgt agctgtgctt tttttaccat catacattaa agaattaata aattttgtga
    33901 ttactttatt accataaatc ggatcaggca agacttctct taccggagct tttcttcttc
    33961 tcattatttt tccttcaaat tttaaatttt actcaaacaa aatcaaatct aacggatttg
    34021 tctgtatgaa tgattatttt gcagcgcctg ctttagggcg tttagcacca tatttagaac
    34081 gagaaactgt tctttttgca acacctgctg tatcaagagc accacgaacg atgtgatatt
    34141 taacccctgg taagtctttt accctaccac cacgcactaa aacaatgctg tgttcttgta
    34201 agttatgacc ttcaccgcca atatagctga tcacttcaaa gccactagta agtcttactt
    34261 tggcaacttt tcttaacgct gagtttggtt ttttaggtgt tgtagtataa accctagtgc
    34321 aaactcccct tctttgtgga caatttttaa gcgctggaga tttagatttt tctaaaactt
    34381 ttttgcgctc ttttctaacc aattgattta tggtaggcac aataattcct ttctttaaaa
    34441 atgtaataaa ctttggatga tatctaattt ttgcttatat tttagttaaa aagattgaaa
    34501 atgaggaaat atagccccga agggctataa aatagagttt tattcttgtt ctttaagttt
    34561 taaattttgt tcgccataaa gccctgttcc aacaggaatc attctaccta gaataacatt
    34621 ttcttttaaa tcttctaagt agtcaaattt acctgctata cttgcttcag ttaaaacttt
    34681 ggtagtttct tggaatgaag ccgcagaaat cacactatca cttccaatcg ctgctcttgt
    34741 tacacctaaa agcacaggct cggcaatagc tggttctcca cccattctaa tgattctttc
    34801 attttcttca cggaatttac gtcttgaaac caaatcacct tcaataaatt tcgtatgtcc
    34861 actatctaca acttttactt gtcttagcat ttgagaaacg ataacttcta tatgtttatc
    34921 agaaatcaca acaccttgtc cgcgataaac ttgctgaatt tcagaaatca aataataatg
    34981 caaggctttt tcacctaaaa ttttaagcac atcatgactc gaaacaactc catctgtaag
    35041 tttttcacct gcatgaataa actctccatc tcttacttga atatgttttg atttgtcgat
    35101 taaatactca gcacttgttc catcttctgc ttggataata attctttctt tagaacgcaa
    35161 aggcttatca aaacgaacaa caccatcaat ttctgcaatc acagccgcat tttttggttt
    35221 tcttgcttca aaaagttcag aaactcttgg aagacctcct gtaatatcct ttgatttagc
    35281 tgctgctttt ggagtttttg ctaaaatatc tgcttgagta attttatcgc catcatgaac
    35341 aaaaataacg gtttttggtt caaggtgata acgcacagct ttatcacctt ttcctgcaat
    35401 taccaaagtt ggtctaactc cgctaggtaa atactcatta attactaaag aacgcttacc
    35461 tgtagcttca tcaatttgct catcagcact ataacctgct tcaatatcct caaagcttac
    35521 aacaccatca atttctgcaa tgatagtatt attataagca tcccattctg caatcacttt
    35581 tctttctttt ttaggagcac ttgcaatgat agtatttgcg tcatcgattt tttcactatc
    35641 gttaaattct atcttagatt ctcttgggat atagtgtctt tttgcttctc tatcattttc
    35701 atcagcaatc actacaaaga atcctttttc tttaacaata tcaccttttt taacattttt
    35761 tactctatct aaaccatcgc ctttaaggat gtaaaatttg agcgttcctt tttcgcctgc
    35821 tttgatattt tgaactatag gctcgccatc ttctactaaa atttcactcg caaaaggaat
    35881 acgatttggt acattccaac cctctttaat cacttctacg atactttcat tttcttctac
    35941 ttgcatgccg ctttgatatg gcaaataaag ttttccatct atactgccac ttacacctgc
    36001 taattcattt ggtttagcaa gatcgtattt tcttagtatg tattttactt cttgtttttt
    36061 atctttaata gaaacaatca catcttcatg aatattttct atattaatca cacctttaaa
    36121 tggagttttg atttttggct ccacaagtaa aaccgccgca tttctacgat ttgctacgat
    36181 atttttacct tgtttgtttt tataagtttt aagattataa aatcttataa aaccttcttt
    36241 ttgtgcgctt acttgtctat cttgtaaatc cgtacttgca gttcccccgc tatggaaagt
    36301 tcttagagtt agctgcgttc ctggttcacc gatagattga gcggaaataa ttcccactgc
    36361 ttcgcctggt tttactaatt taccttcacc aagattgata ccataacatt ttgcacaaat
    36421 tcctttttta gctttgcagg tgataggagt gcggatattg acacttttta taccgctttc
    36481 gccaagaatt tttgcttttt cctcatccat taaagtacct tctgcaaaaa gcacagaatt
    36541 tgtaatagga tcaatcacat cctcagctaa aaccctgcct aaaattcttt cttctaaagt
    36601 ttctataata gaactatctg cggtaatttc attgatttca acaccctcat gtgttccaca
    36661 atcttcaatg gtaattttta cattttgtgc aacatcgatg agttttcttg tcaaataacc
    36721 cgcatttgct gttttaagag cggtatctgc aagacctttt ctagcaccgt gagttgaaat
    36781 aaagtattca agaacattta gcccttcacg gaaatttgaa ataataggcg tttcgataat
    36841 agaaccatca ggtttggtca taagtcctct catcgcagca agctgagaaa tttgagctgc
    36901 actaccccta gcaccagaat ctgccatcat ataaatagag ttaaaacctt ctttatcttt
    36961 ttctacaagc ttcatcattt cttttgaaag aacattgttt gtacttttcc aaatatcaat
    37021 gattttattg tatctttccc ctgaagtaat caaaccgaga ttataagaat tttgaatttc
    37081 tcttacttgt ttttttgctt catcgatagc tttttgttta tcattaggaa caataatatc
    37141 tgcaatcgaa attgaaatac ctgctttagt tgcatattca aaacctaaat ttttaagtct
    37201 atccaagaaa cttgctgtaa tctctaaacc accttgttta taaacataat ccacaagcgc
    37261 agcaatgtct tttttcttta agactttatt ccagctattt tcaggcacaa aatcaggtaa
    37321 aatggattta ataatcaatc ttcctgctgt agtggtaatc tttctaccat ctaccatagt
    37381 ttgtatgctc gcatgaatat ccaaacactt gctttcaagt gccatcatca cttcatcaat
    37441 gcctgtacaa attttatgcg aacctttagc acctgctttt tccaacgaaa gataataaat
    37501 tcctaaaacc atatcttgcg atggaacggt tacagactta ccgcttgctg gtaaaagaat
    37561 attcattgat gaaagcataa gcactttaca ttctgcaata gcctcttgag aaagcggtac
    37621 atgcactgcc atttgatccc catcaaagtc tgcgttaaat gctgcacaaa ccaaaggatg
    37681 aagttgtata gccttacctt ccactaaaac aggatgaaaa gcttggatag aaagcttatg
    37741 caaagtaggt gcacggttta gcataacagg atgtcccttt actacctctt ctaaacattc
    37801 ccaaacttca ttggttttgt tttctatcat ttttttagct tgttttactg tggttgcata
    37861 acctttttct tcaagcttag ctaaaagatg tggcttaaag agctctaaag ccattttttt
    37921 aggtaaacca cattgatcca ttctaagttt tggacctaca acaataacgc tacgacctga
    37981 gaaatccacc cttttaccta gtagattttg tctaaaacgt ccttgtttcc ctttgatgat
    38041 ttcacttaaa gattttaatg ggcgtttatt tgctcctttt acagcattag cacgacgacc
    38101 gttgtcaaaa agtgcatcaa cagcctcttg aagcattctt ttttcatttc tgataatgat
    38161 ttcaggtgca tcaagttcca taagtttttt aagacgtgta tttctattga taacacgacg
    38221 atataagtca ttcacatcag aaactgcaaa ttttccacca tctaaagcca ctaaaggacg
    38281 caaatctggc ggtaaaactg gaagatttgt aatcatcatc cattcaggac gatttggtac
    38341 ggcttcatca ctatcggtat tggcgtttaa atttgaattt aagaaatttt ctactacttt
    38401 taagcgttta atgatggttt ttttcttagc ctctgaattt gtagccgcca tttcttcttt
    38461 aagctgattt aaaagtgcca caagatctaa atttgcaagt aaatcacgaa caacttctcc
    38521 acccattctt gctttaaagc cactattttc atagcgttgc attaaatttt gatattgctc
    38581 ttcgtttaaa acatcacaat attctacttt tttggtgctt tcattatcat agaaagcatc
    38641 gcctggattt tcaacgatat aagcttcata ataaagcaca cgctcaagat ctttcatctt
    38701 aacacccaaa agcgttccta tacggcttgg aagagaatta acataccaaa tatgagccac
    38761 aggagttaca agctcgatat gccccattct agaacgacgc acttttgaat ttgctacttc
    38821 aacaccacat ttttcacact taacgccttt aaaacgcatt tttttgtatt taccacaaag
    38881 acactcataa tctcttatag gtccaaaaat ctttgcacaa aaaagcccat ctctttcagg
    38941 ctttaaggtt ctataattaa tagtttctgg tttttttact tctccataag accatgattt
    39001 gattttttca ggacttgcaa gtctcagttg aaatgcttca aaatctctag gtcttgcatc
    39061 ttctttaatt tctattactt taaatttact cattatcttc atccttatca aaaatctcaa
    39121 catctaaagc aagagattta agctcattgg ttaatacaaa aaatgtttca ggaattcctg
    39181 ttgctggaac attttcacct tttgtcaatg ctttataagc actaaatcta ccttctacat
    39241 catctgattt tatggttaac atttctctta aagtgtgagc cgctccataa gcttcaagtg
    39301 cccaaacttc catttctcca aatctttgtc ccccaaagag tgctttacca cccacaggtt
    39361 gttgggtaac caagctataa ggtcctgtac ttcttgcatg aactttttca tcaaccaagt
    39421 gatggagttt tagcatatac atacatccta catgaacacg ctctgcaatt ttttcccccg
    39481 tgcgtccatc ataaagttct gttttgccat ccatatctat cttagccatt ttaaaaagct
    39541 tgctaaattc ttctatattt acaccttcaa aaacaggagt agaaaattta actcctttac
    39601 tccagtctct agcatagttt aaaagctctt catcgcttaa gcttttaata aattcttttt
    39661 cgtttgcaag tcttggaata gaacaaattt caagcatttt cgctcttaat tctttaagaa
    39721 aatctttttg ctttctatca aaaatttctt gaatttgatc cccaagtcta agtccaacta
    39781 aacctaaatg actttctaaa atttgaccta tattcatacg acttggaacg ccaagtggat
    39841 taagcgcaat atccacactc ttaccatttg gcaaataagg catatctact tcaggaacta
    39901 tagttgaaac tataccttta tttccatgac gtcctgccat tttatcaccg actttaagct
    39961 ttctttttgt agcaatataa actttaacaa gcttaattac cccacttggt aaaatatcat
    40021 ctttttctaa aatttcaagc ttttcatcgt gttctgcttt taattttttc ttctcatttt
    40081 ggaaatgatt ttttaaatca tcgtattctt tttgaatctc tttagaataa gctttaatca
    40141 aagttgttaa agtaaaacga ttgatttttt caagttcgct aatatctgca gtttgtcctt
    40201 ttttataatt tttatctcca attttttgat cgctatttaa agaagctttg gaaagaagag
    40261 cacaaacacg aagcatttct tctctatcca tcatcaaaag tctatcatga tgctcttttt
    40321 ctaaagccat tttttcttta tcataagatt ttattgcgcg atcatctttt tcatagcctt
    40381 ttttagtgaa aattttaaca tccacaacaa caccctctaa agaagcggtt gcataaaggg
    40441 atttattcac aacatgtcct gctttttctc caaaaatcgc tcttaaaagt ctttcttcag
    40501 gagttggttt aacctcacct tttggagaaa ccttacccac caaaatcata cctggtttga
    40561 tatgggtacc aatttttgca ataccgctct catcaagatg cgcaacatct tcttctttta
    40621 catttggaat atctttggta atttcttcta taccgtcttt tagttctctt gcttcaattt
    40681 ctttttcata aatgtgcacg cttgtaaaag tatcttcacg aataattctc tcacttacaa
    40741 ctatagcatc ctcatagtta taaccattcc aaggcataaa agcgattaaa gcatttttac
    40801 ctatagcaag ttcgccttga tccatagaag gaccatctgc gataatttgt cctgctttta
    40861 ctatatcacc ttttttaaca atagggtgtt gaatataatt tgtattttga ttggttctta
    40921 aatttttctc catagtgtaa tggtcaataa atggaccttt atcatcttca cctaaaatga
    40981 aaatgctttt attatccact ttctcaacca caccgccacg ctttgcttta acagcttccc
    41041 aagcatcacg cgcaataatt tgttccatac ctgttcctac tatcggagct gaagcagtaa
    41101 gaagtggcac agcttgacgt tgcatgtttg aacccattag cgctctgttt gcatcatcgt
    41161 gctctaaaaa cggaatcaaa gaagctgcaa ctccaacaac catacctgag caaagatcga
    41221 ttaattgcac ttcttcgcgt cttgcaagta tagtttcacc atcttgccta gcctcaacaa
    41281 attcttctac tatattgcct ttagcatcaa ccttagttga agctggtgcg ataaacaagc
    41341 cttcttcttg tgtcgctgta agataaacaa cttcattagt cactttacca tttacaactt
    41401 ttctatatgg cgcttcaaca aagccaagtt catttacttt tgcataagta gaaagagtgt
    41461 taatcaaacc aatattttga ccttcaggtg tttcaactgg acaaattcta ccataatgtg
    41521 tcgcgtgaac atcacgcact tcaaaacctg ctctttcttt tacaagtcca ccttcaccaa
    41581 gcgctgacaa acgacgctta tgagtaacct cgcttaaagg gttggtttga tccataaatt
    41641 gcgaaagttg acctcctgta aaaaattcaa tgatagttgt agtaatcatt ttaggattga
    41701 ttaaatcata aggcattact ttatcaagat ccgcatttaa agaagtaaat ttatctctga
    41761 tcgccttttg catttttgca agacctaaat gaagttcatt ggctaaaagt tcacctatag
    41821 aacggatacg acgatttcct aaatgatctc tatcatcaat atgtccttta ccatttttta
    41881 ctttaattaa atattttgca gttttaataa tatcttcatt agtcaaaaca gtaacatact
    41941 caggtacttc aagacctaat ttatggttca ttttcatacg acccaccttg gtaagatcgt
    42001 atctttcagg attgaagaat aaatcattta caaaagcctt cgctgcatct tttaccacag
    42061 gttcacctgg gcgcataact ttgtaaattc taatcgcagc taaatcattt tcatcatcga
    42121 tattttcact ttgtttaaga agttttagag tttctccatc ttgagcaaag gagttaataa
    42181 tcgctgcatc aacgccatta gccaagtcat ttgctatatc aaaacttttt tgctctttaa
    42241 tcttagcaag cttactctca tctaacaaag ttaaagaatc aaataaaacc tctccacttt
    42301 ctttatcaat aataggattt gctaaataac gattaagtaa aatttctaca ggatattcta
    42361 tccattttaa accgtcttta ataagctgtt ctgctttttt ctttgtaagt ctttttccag
    42421 cttgatgaac gatttttcct ttttcatctt taatatcata ttctattcta tccataaaat
    42481 catttggatt aaattctgtt aaaaatttat cttttttcac atgtatagtc tgaataggat
    42541 aaaacaactt aataatatct tgttttttat accctaaagc tctaaaaagc atagttacag
    42601 gaacttttct acgcttattg attcttacat acaaaacatc tttggcatcg tattcaaaat
    42661 aaagccacga accacgatca ggaataattt gtgctgtata aacaagctta tttgcaaccg
    42721 ttgaactttc ttcttcttta aaaataacac cagggcttct atgtaattga tttacaacca
    42781 ccctctcaac cccattaatg ataaaagata cacgatctgt cattaaagga atttcgcgga
    42841 tataaatttc ttgttcttta atatctttta cgccaacttt ttcccctgtt ttttcatctt
    42901 tttcatgcag agtaagacgg attttcattt ttaaatttac agaataagtc aaacctcttt
    42961 ccatgcattc gcgaatggta tattttggct tgcctatttc actactaaca tattcaagac
    43021 tcaatctatt ttgcggatca tgaataggaa aaattgattt aaaaactttt tctataccac
    43081 tttcaccatt atcaagattt aaaaaataat caaaactctt tttttgtaat tgtagaagat
    43141 ttgggatttc tatttgtttt gaaatgtttg agaagtctac tcttaaacga tttcctaatt
    43201 tattatctaa catatcgcac atacctcatg gtaaattttg taaatttaaa aaagaagacc
    43261 taaaaattag gtaaaaataa aaaaagaaga cttgccttgg caaatcttct tctaacttta
    43321 aagcttaaaa ttacttaagt tctactttag caccagcttc ttcaagttgt tttttagctt
    43381 cctcagcttc agctttagcc acaccctctt ttagagttga aggagtttgc tcaactgcat
    43441 cttttgcttc tttaagacca aggcctgtaa gagcacgaac gattttaata acttcaatct
    43501 ttttagcacc gccatcagtt aaaacgatat caaattcagt tttttcttca gcagcagctg
    43561 cagcaccacc agctgcagca ccaccagcta tcattacagg agcagcagac acaccaaatt
    43621 tttcttcaaa ctcttttaca agttctgata actcaagaac acttaaattt gaaatatatt
    43681 ctaatacatc ttctttagag attgccattt tttatccttt tatttaattt attcagattc
    43741 ttttttattt ttaagcgcat ttaaacctat tgtgaaattg gtaattggcg cattccaaac
    43801 ttgcaaaagc atagcaagca actcattgcg tgaaggcatt ttagcaagag ctttaacctt
    43861 agcaacatct gcaacttcgc cttcaatatg agctgttttg atttcaaatt tatcgttatt
    43921 ttcttcaaat ttagcagcta cttttgaaac acctagctga tcttcgcccc aaagataaat
    43981 atttgtatct ttaagaacta gacctgtttt accggaattg ttaagagcaa tgttagccaa
    44041 agtattttta acaatttgaa cttttacatt gttttctctt gcattatttc taagctcttc
    44101 tagttttttt gtgctaagac ctctgtaatt acaaactaca atagcttcac tagctttaaa
    44161 accttcttca agtttagcaa taatctcaac tttttcgctt ctagtcacat tttctccttt
    44221 ccgattgaga tttcaagtag agtggaaatc caattaagct tacgcctcga ctatcttcaa
    44281 tctaaaataa acatctcaaa aaatcaaaaa ttttttcaaa tgtttatttt aaaacaaaag
    44341 agttgcaaaa aagcaactct tatttcatat caagcaattc ttgtgtttca agctttacag
    44401 aagggctcat tgtcaaagat aaagccgcat ttttaatata tctaccttta gctgcagcag
    44461 gtttatgttt gttaattgcc tttacaaaag tgctaacatt gtcccataat tgttctttgg
    44521 aaaaacttac tttaccaaga cctgcatgga tatttccttg cttatcaaca cggaaattta
    44581 cctgaccact ttttgcatta ttaactgctt gagcaacatc catagtcact gttccagttt
    44641 taggatttgg cattaaacct tttggcccta aaattctacc aactttacca acaagtccca
    44701 ttaaatttgg agtagcaatc aaaacatcaa aattcatatt acctttttga atttcttcta
    44761 ctaaatcatc gctacccaca atatctgcac cagcattttt cgcttcatca gcttttgcgt
    44821 cttttgcaat tacagcaaca cgaacttttt tacccgttcc agcaggtaaa acaacagatc
    44881 ctcttaccat ttgatctgca tgtcttggat caacattgag ttttaaagca atttctacag
    44941 tctcatcaaa tttagcagac tttaaagtct ttattgtatc aattgcatcg cttaaagcat
    45001 actctttatt tgaatcaatt ttttgtgata attcttttaa tctttttgct atcttagcca
    45061 tttattttct ccgcatttta aagtgctacc gccttttacc ttggcggtga aaggattaat
    45121 ctacgatttc aacacccata gaacgagctg aacctgcaat aattttagca gcttgatctc
    45181 tatctttagt atttaaatct gcaattttct tatctactat ttctaaaact tgagcacgag
    45241 ttaacttacc caccttattt ttaagtggat tatccgtacc tttagaaatt ccagctgctt
    45301 ttttgatcaa atccgtagct ggcggttgtt ttgtaataaa agtaaaactt ttatctgcat
    45361 aaacagtgat aacaacaggg atattaaaac ctgccatatc ttttgttctt tcattaaaag
    45421 ccttacaaaa ctccataata ttaacacctt gctgacccaa agcaggacca acaggtggtg
    45481 atgggtttgc ttttgtggca gcaatttgca atttaatttc gcctacgact tttttagcca
    45541 taacaaatct ccttacttga tataaattaa attattttct caacttgaga atataagatc
    45601 tccactggag ttgaacgtcc aaaaatagaa acatttaatt ttaataaacc acgaaccata
    45661 tcatactctt ctacaattgc agtaaagttt gcaaatggcc cttctgtgat tctcacattt
    45721 tccccttctt caaaagaaat ctttggttta ggcgctgcac gattgtgaac tttttccaaa
    45781 atcaaattaa tatctttttc tgttaaaggg gttggctttt tggattctcc aataaaacga
    45841 ccaacctttg gaagagattg aatgcgatgc caaagctctg tatttaaatc aagaagtgca
    45901 aaaacgtatc ctgaatacaa acttctttcg ctaatcttct cctttccatt cttaaattca
    45961 ataacatctt cagttggaac aacaatttct ttaagttgtt cttcaattcc gttatctttt
    46021 actaaatttt caatggctct tttaactgcc atttcactgc cagcataagt ttgaattgca
    46081 taccatttat gagtactcat ttactctcct tatacgatcg cagaaacaat agaggacata
    46141 agccaatcca ctaacgccaa aaacaaagaa atcaccacaa caaccacaaa aactgtaata
    46201 taggcatttc ttacctgttc ttttaaagga aaaattactt tccttaattc ggcttttgat
    46261 aatttaaaat aagttattaa tttttccatt tatttaaacc ttaattatgg cagggcaaga
    46321 gggattcgaa cccccaacca tcggatttgg aatccggcgc tctaccgttg gagctattgc
    46381 cctaagggcg caagcttaac tttttaactt aacttctttg tgaagtgtat gtttttttaa
    46441 tcttgggcaa tattttttta attctaattt ttcagtagta tttttactat ttttataggt
    46501 gctataatta atatcaccac attcttcaca ctttaaacca actttaattc tcatttcaat
    46561 tttccttaaa aaattaaagc caagctttta acttggcttt attaaattat ttaataattt
    46621 tagaaacaac acctgaacca acagttttac caccttcacg aatagcaaaa cgagttcctt
    46681 cttcaagtgc tactggagcg atcaagctta cagtaattct cacattttca cctggcataa
    46741 ccatttcaac accatcagct aatttaatcg aacctgtaac atcagttgtt cttacataaa
    46801 actgtggtct atagttgtta aagaatggag tatgtctacc accttcatct ttatttaaga
    46861 tataaacttc agcttcgaag tcagtgtgtg gagtaattga ttttggttta gcaagaacca
    46921 taccacggat aacttcttct tttttagtac cacgaagaag aacacctaca ttatctcctg
    46981 cttcgccttg atccatttct tttctgaaca tttcaacacc tgttacagtt gttgtttgag
    47041 tatctttaat accaacgatt tcgatagtat cacctacttt tacaacacct ttttcaattc
    47101 tacctgtaac aacagtacca cgacctgaaa ttgagaaaac gtcttcaatt ggcatcaaga
    47161 agtctttttc agtatcacga gttggagttg gaatatagct atcaactgca gccataagat
    47221 ccataatttt tgctgaccat tcaccatctt gtccagcttt agcttcttca agagctttta
    47281 aagcagaacc agaaataata ggtgtatcat cgcctgggaa atcataagag cttaataatt
    47341 ctctaatttc catttcaact aactctaaaa gttcagcatc atcaaccata tctgctttat
    47401 tcataaaaac aacaatatat ggaacgccta cttgacgaga aagaagaatg tgctctctag
    47461 tttgtggcat agggccatct gcagcagaaa caaccaagat cgctccatcc atttgtgcag
    47521 cacctgtaat catgttttta acataatctg cgtgacctgg gcagtcaacg tgtgcatagt
    47581 gacgattgtc tgtttcatat tcaatatgag aagtagcaat agtaatacca cgctcttttt
    47641 cttctggagc attatcgata ttatcataat ctttaagctc tgctaaacct cttctagaaa
    47701 gaacagcaga aatagcagct gttaaagtag ttttaccatg gtcaacgtga ccaatagtac
    47761 caatatttac gtgtggctta ttacgtgaaa atttttcttt agccattttt ttcctccgta
    47821 taaaaaataa attgagcaaa gcaagtctta tatctatata attttttcaa ttcatggagc
    47881 tcatagcggg aattgaaccc gcgacctctc ccttaccaag ggagtgctct acctctgagc
    47941 catacgagcg ctcagaaaaa ttatacacaa taacagacaa caaaaactct taaatgggat
    48001 atatactgta agttaaaggt tttaaaatac agctcccagt tcttttaaat tattggagcg
    48061 ggaaacggga ctcgaacccg cgaccctcag cttggaaggc tgatgctcta gccaactgag
    48121 ctactcccgc aaagcatggt ggtgagtcgt ggattcgaac cacggaaggc gaaagccagc
    48181 agatttacag tctgccctcg ttggccactt gagtaactca ccataaaaat attgcttttt
    48241 caatattctg gtcaaacact gctaaaataa atggagctgg ttaagggact tgaacccccg
    48301 acctgctgct tacaaggcag ctgctctacc aactgagcta aaccagcaaa aataaaagta
    48361 agattataac tcaaaaaaaa aattttgtca agactttttt agtttttcta taaaatttta
    48421 gtcttg
//
LOCUS       DAQSLY010000002        41439 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.002, whole genome shotgun sequence.
ACCESSION   DAQSLY010000002 DAQSLY010000000
VERSION     DAQSLY010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 41439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41439
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.002"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..549)
                     /locus_tag="R2H98_000053"
     CDS             complement(<1..549)
                     /locus_tag="R2H98_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022986.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAI"
     gene            complement(551..2353)
                     /gene="uvrC"
                     /locus_tag="R2H98_000054"
     CDS             complement(551..2353)
                     /gene="uvrC"
                     /locus_tag="R2H98_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEE9022987.1"
                     /translation="MIKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIRNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLNSSKLVNLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(2346..2840)
                     /locus_tag="R2H98_000055"
     CDS             complement(2346..2840)
                     /locus_tag="R2H98_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022988.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYTVNKNKNDEKLSKNSYLELSKGEFKNCFEDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            2979..4514
                     /gene="guaA"
                     /locus_tag="R2H98_000056"
     CDS             2979..4514
                     /gene="guaA"
                     /locus_tag="R2H98_000056"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEE9022989.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPILGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEVKKDSALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSEEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            4601..6061
                     /locus_tag="R2H98_000057"
     CDS             4601..6061
                     /locus_tag="R2H98_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9022990.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRNNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            6301..7551
                     /gene="purD"
                     /locus_tag="R2H98_000058"
     CDS             6301..7551
                     /gene="purD"
                     /locus_tag="R2H98_000058"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEE9022991.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            7548..8000
                     /locus_tag="R2H98_000059"
     CDS             7548..8000
                     /locus_tag="R2H98_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEE9022992.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            7990..10038
                     /locus_tag="R2H98_000060"
     CDS             7990..10038
                     /locus_tag="R2H98_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEE9022993.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYTVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYITTPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            10108..12267
                     /locus_tag="R2H98_000061"
     CDS             10108..12267
                     /locus_tag="R2H98_000061"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEE9022994.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLVKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGPKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            12264..12746
                     /locus_tag="R2H98_000062"
     CDS             12264..12746
                     /locus_tag="R2H98_000062"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEE9022995.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQTKIQAIFTTGQSAYRFFVKFHPHLEAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(12789..13451)
                     /locus_tag="R2H98_000063"
     CDS             complement(12789..13451)
                     /locus_tag="R2H98_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEE9022996.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IK"
     gene            complement(13469..14658)
                     /locus_tag="R2H98_000064"
                     /pseudo
     CDS             complement(13469..14658)
                     /locus_tag="R2H98_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            14712..15167
                     /locus_tag="R2H98_000065"
     CDS             14712..15167
                     /locus_tag="R2H98_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEE9022997.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            15418..16713
                     /gene="porA"
                     /locus_tag="R2H98_000066"
     CDS             15418..16713
                     /gene="porA"
                     /locus_tag="R2H98_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_052795691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 2 major outer membrane porin protein PorA"
                     /protein_id="HEE9022998.1"
                     /translation="MKLVKLSLVAALAASAFSAANATPLEEAIKDIDVSGVLRYRYES
                     SNPWSNANFGSGISGKQDHKYRAQVNFSGAISDNFKAFVQFDYNSQDGGYGADSISNT
                     SDTLSVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNAIDGLVGTGIKVVNNSIDGLTL
                     AAFAMDSFNEASDTTVTITQDSSQKITGVQFNRGNPKGDSDVSGALDWSKNIYGAAAI
                     GSYDIAGGQFNPQLWLAYMSDNAFLYALDATYSTTIFDGINWTIEGAYLGNSVDNKLK
                     DRLDAANGNFFALRGTVKVNGWDASLGGLYYGKKDKITVTTIEDQGNLGSLLAGEEIF
                     YTRGSNLNGDLGRNIFGYVTGGYTFNEAVRVGADFVYGGTKTNIIGQGGKKLEAVARV
                     DYKYSPKLNFSAFYSYVNVDTDPESTHHDAVRLQALYKF"
     gene            complement(16829..17950)
                     /gene="dnaJ"
                     /locus_tag="R2H98_000067"
     CDS             complement(16829..17950)
                     /gene="dnaJ"
                     /locus_tag="R2H98_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEE9022999.1"
                     /translation="MEISYYEILEITQNADKETIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEG
                     FGSSRRRKSSNDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGK
                     LQTCPKCQGRGQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELN
                     IPEGVDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQA
                     ILGQSIKVPTIRGEATLNLPKGAKDGQRFILEKEGVKDVHSSRIGNQIVQISIKFPTS
                     LNDEQKELLEKLSESFGIKDGMHQEQKGLFEKIANWFKS"
     gene            18107..18778
                     /locus_tag="R2H98_000068"
     CDS             18107..18778
                     /locus_tag="R2H98_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEE9023000.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKNALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            18775..20010
                     /locus_tag="R2H98_000069"
     CDS             18775..20010
                     /locus_tag="R2H98_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEE9023001.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAVQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANWEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            20010..20582
                     /gene="recR"
                     /locus_tag="R2H98_000070"
     CDS             20010..20582
                     /gene="recR"
                     /locus_tag="R2H98_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEE9023002.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(20579..21115)
                     /locus_tag="R2H98_000071"
     CDS             complement(20579..21115)
                     /locus_tag="R2H98_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEE9023003.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFAYE
                     KIADFSLQELADISYKNY"
     gene            complement(21112..21804)
                     /gene="cybH"
                     /locus_tag="R2H98_000072"
     CDS             complement(21112..21804)
                     /gene="cybH"
                     /locus_tag="R2H98_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEE9023004.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(21815..23530)
                     /locus_tag="R2H98_000073"
     CDS             complement(21815..23530)
                     /locus_tag="R2H98_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEE9023005.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALNADVKKASDEAFKYTPNPYATGSDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(23533..24672)
                     /locus_tag="R2H98_000074"
     CDS             complement(23533..24672)
                     /locus_tag="R2H98_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEE9023006.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(24792..26633)
                     /gene="mnmC"
                     /locus_tag="R2H98_000075"
     CDS             complement(24792..26633)
                     /gene="mnmC"
                     /locus_tag="R2H98_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEE9023007.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRLLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADVWYLDG
                     FSPNKNLQMFDENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDVFE
                     KYLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKNLVKNLFEKSKACIYFNHEFQA
                     YKFENECFTLKFKNDIVKSDYAVLIYAMGADTKDFVFYDEMKLSKVRGQVTHLKPFLD
                     TPFPLSSKAYICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(26630..28609)
                     /locus_tag="R2H98_000076"
     CDS             complement(26630..28609)
                     /locus_tag="R2H98_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEE9023008.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKTTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQKPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(28609..29700)
                     /locus_tag="R2H98_000077"
     CDS             complement(28609..29700)
                     /locus_tag="R2H98_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEE9023009.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(29697..30902)
                     /locus_tag="R2H98_000078"
     CDS             complement(29697..30902)
                     /locus_tag="R2H98_000078"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEE9023010.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIEKLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQSNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(30914..33109)
                     /locus_tag="R2H98_000079"
     CDS             complement(30914..33109)
                     /locus_tag="R2H98_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEE9023011.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKVLLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPLLVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQAATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(33093..33317)
                     /locus_tag="R2H98_000080"
     CDS             complement(33093..33317)
                     /locus_tag="R2H98_000080"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEE9023012.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(33328..34047)
                     /locus_tag="R2H98_000081"
     CDS             complement(33328..34047)
                     /locus_tag="R2H98_000081"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEE9023013.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(34099..35292)
                     /locus_tag="R2H98_000082"
     CDS             complement(34099..35292)
                     /locus_tag="R2H98_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEE9023014.1"
                     /translation="MRKNILIFFCFFLFVDISLANTINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLASQNEDLLKSKSN
                     MESKLISLMAKDFAYDLPIPQGYIESEESFVAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINDSLKDYNAQLVKLQSLKQKQISEINKQKTDRTIYAKKLDDLQAQ
                     QEELRKTLNQLKIINNKEGANLNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(35289..36095)
                     /locus_tag="R2H98_000083"
     CDS             complement(35289..36095)
                     /locus_tag="R2H98_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023015.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILVTNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKGLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFLFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(36082..36747)
                     /locus_tag="R2H98_000084"
     CDS             complement(36082..36747)
                     /locus_tag="R2H98_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023016.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(36817..37995)
                     /gene="trmB"
                     /locus_tag="R2H98_000085"
     CDS             complement(36817..37995)
                     /gene="trmB"
                     /locus_tag="R2H98_000085"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEE9023017.1"
                     /translation="MPNFKSKKIKEINLPCSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVKFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(37995..39230)
                     /locus_tag="R2H98_000086"
     CDS             complement(37995..39230)
                     /locus_tag="R2H98_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEE9023018.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDLAGLRSEPSNKVKAAQ"
     gene            complement(39175..40143)
                     /locus_tag="R2H98_000087"
     CDS             complement(39175..40143)
                     /locus_tag="R2H98_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEE9023019.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIVSIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGSILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            40221..41321
                     /locus_tag="R2H98_000088"
     CDS             40221..41321
                     /locus_tag="R2H98_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEE9023020.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
BASE COUNT        14177 a         7342 c         5760 g        14160 t
ORIGIN      
        1 tatggccaca cttgcttcaa attgcaaaac ctttccatga gatgttccta taatgctttt
       61 atgatgctct aaagcctcat ttaattctaa tctaatttga tctttttgag aatttaaggc
      121 atttaaaatc aaagaattaa tttctttatt atacccttca tttaagcaac gcattgcatt
      181 agatatattt acaagctgat ataaattttc ctccaataaa tgcaaatatc tatctttttc
      241 atgggatatt ttagttaaat tttggctcgt agtttcaaat ttttccttta acaaatcaag
      301 cgcactatca acatcaatct ttttttgaaa atttaaaaaa tcattttgca tgcaaaaaat
      361 tttttgatat attttgttta tatttctatt ttgcctaaaa gcaaaaataa aaagtgttaa
      421 agataaaaca aaaatgctag aaaacatacc tattttcagt tgttcagtaa cactatcaag
      481 ctttgagata tcaatactta aatacgctaa aattagatta aaaataaaaa ttatccctgc
      541 taatatcaaa tcaattttcc tttatctttt gcgccgcttt cctgcctaca agcattgtaa
      601 gatctttaaa atcagcctta tatatagatt caaaatttcc ataatacgct aaaagttttt
      661 gtataacccc tgaactaagt cctaaattta caagcttaga actattcaag tcctgttttt
      721 tcttagtatt ttgatgaaag ctgatagcaa aacggtgtgc ttcatctctt aatttctgta
      781 agaattgtag ttttttatcg ttaatgctta gactaaattc tccttttaag gaatgaattt
      841 tatccttagc acccccttta gctctatgtg cttttgcatc gattttttct tttgaaatag
      901 ctaaaatatc gacatttgcc ccactactta caatgatttc tttagccaaa tcaagcaaag
      961 cctttccccc atctataagc cataaatcag gaggaggtat tttatcaaag tccaaagctc
     1021 tacgcgttaa aacttcacgc atttgatcat agtcattttt atgttttaaa tgaaattttc
     1081 tatattttga cttatcccaa gaatttattc tataagttac catagctcca acatttgcca
     1141 cgccttgcaa atgagaattg tcaaaaattt ctatatcatt tggtaaattt tcaagctcaa
     1201 aataaaactt taattctttt tgtatagtaa aatcatgatt tttttgctct ttttctatat
     1261 ttaaaagggc attttgaaaa gccaaatcac aaattcttct tttttctcct attttaggga
     1321 ttttaatact gattttttta tcaaaccttt ggcttaaaat ttcttctaaa agcactctat
     1381 cttcaaattc ttcataaaca taaataacat ttgcaagcaa aggaatatcc atgctaaaat
     1441 tttctaaaat cagttgctta taaatttcat tttgatccca ttgtatatca tttcttatag
     1501 gagtaatctt agaatttgca ctgataattt ttccattttg caccacaaaa cgcaaggttg
     1561 aaagcacgga atttttaaaa gctaaagcaa atacttcaaa atcttctaat ttcgcaatat
     1621 ctatttcaac cttaacttcc aaatctttaa tcattgcaat ctgatctctt actttagctg
     1681 cttcttcgta attttcattt tgtgctaaaa caagcatttg tttttctaag tttttaagca
     1741 aaacactagg atttaaaagt gcgtgtatag cctcatctaa aatttcaagg tatttttccc
     1801 tgctgataag tttatcacaa ggtgcaagac aacgagaaat ttgataaaaa atacaagggg
     1861 atttacaact tgctttttgc tttaaaggat agtataaata aagcgcatct aaaagctctc
     1921 tagcgccttt aaaaaaaggg ccaaaatatt taattttgct tttttttact aattttctag
     1981 tgatctcaaa gcgtggaaat tcttcttcaa aatccacata aatataagga taagttttat
     2041 catctcttag caaaatatta tattttggat gcagttgttt gataaaagaa ttttctaaaa
     2101 tcaaagcatc agcctctgaa ttagtagcaa taaattccaa atgcactgtt tcttcaatca
     2161 ttttttgaat tcttaaagaa tttcttggat ttgcatgtaa atttggagta aaggcaaaat
     2221 aagatttgac acgattttta agatttttag ccttgcctac atataaaagc tttccttctt
     2281 gattaaaata ttgatacact ccagcactat tgggaagagt ttttaactca ttttctaaat
     2341 tctctttaat caagattaga accttttttt ataagctctc ttaaatcttc aaatttctta
     2401 aataattttt tatcttcaaa gcaattttta aattcaccct tagaaagctc caaataagaa
     2461 tttttagaga gtttttcatc atttttgttt ttatttaccg tataagtgta tttttgagaa
     2521 aagattttta tatcttttat atcaacaaat ccgcttaaag gatatttttg tccatatgct
     2581 tttatgagaa atttaatata aattttgcta tcatcatgat ttaattcttg ataagctgct
     2641 ggatgtaagg ttattatatt taaaatatga ttttttacat aaattttagc aatcaaacgt
     2701 tgcttagcaa gcggaaaaga acttaaaaaa tctttgcaaa aaaataaggt ttttaaaggc
     2761 ttataatgag gtttatccat caattcatta ataacagcac tagcgttttt agtcatctta
     2821 atattatttc tttttcccat aagatgattt tagcatttct tttcttaatt ttcttctgtg
     2881 cttgcggata taaaggcaac cctcaataca caagctatga acaaaatggt tcggtaaaaa
     2941 ccattaaaaa atacgaacaa ttacataggt ggtaaataat gaaaaaagca gatattttag
     3001 ttttagactt tggctctcaa tacactcagc ttatagcaag acgcttaagg gaacaaggag
     3061 tttatgcaga aattttacct tttaatgtaa gcttggctga tattaaggcg aaagaaccaa
     3121 aaggtattat tttaagcgga ggtccagcaa gcgtatatgc aactgatgcg tatttttgcg
     3181 ataaaggcat atttgactta aatctaccta ttcttggaat ttgttatggt atgcaactca
     3241 tggcacatca ttacaaagct acagtagcac ctgcaggaca taaagaatac ggcaaagcaa
     3301 acatagaagt taaaaaagat agcgctttat ttaaaaatct tccaaaaaaa caaaccgttt
     3361 ggatgagtca ttctgataaa gtagaaaatt tacctcaagg ttttgaagtt ttagccacaa
     3421 gtgaaaatag ccctttttgt gtttttggaa atgaggataa aaaattcttt gctctacaat
     3481 ttcacccaga agtacaacac agcgaatttg gcaaaaatat cttaaaaaat tttgctaaat
     3541 acgcttgcaa ttgtgaaagt gtttggaata tgggttcttt tgcaaaaact caagcagaaa
     3601 aaatccgcga agaagtaggc aatgataaag tgctttgtgc tgtaagtggc ggagtagata
     3661 gtagcgtagt tgctgcactt ttagctagcg ctataaaaga gcaagttata gtagtttttg
     3721 tagataatgg acttttaaga agtgaagaaa aagaacaagt tgaatttatg tttaaaaaca
     3781 ctttaggcat cgatctcatc agcattgatg caagtgaaat tttcttaagt cgcttagcta
     3841 atgtcacaga tcctgaacaa aaaagaaaaa tcataggaaa tacctttata gaagtttttg
     3901 aagaagaagc aaaaaaacat aaagatgtaa aatatcttgc ccaaggcaca ctttatactg
     3961 atatcataga aagttctgtt gtaggtgcaa gcaaaaccat taaaagccat cataatgtag
     4021 ggggcttacc tgaaaaaatg aatcttaaac tcatagagcc tttaaaagaa atttttaaag
     4081 atgaagtgcg tgccttagga cttgagcttg gacttagcaa agaagtagtt tatcgtcatc
     4141 ctttccctgg gccaggtctt gctatacgca ttatgggaga agtaaatcgc gctagcttag
     4201 aactattacg caaggctgat gtaattttac ttgaggaact taaaagtaca ggttggtatg
     4261 ataaaacttg gcaagcattt tgcgtacttt taaatgttaa aagcgttgga gttatggggg
     4321 ataaccgcac ttatgataat gcagtttgta tacgcgttgt agatgcaagt gatggtatga
     4381 cagctacctt ctcgcattta ccttacgaaa ttttagaaaa cataagtcgc cgtatcatca
     4441 atgaagtaga aggtataaat cgcgttgttt atgatatctc aagcaaacca cctgcaacta
     4501 tagaatggga ataatccatt tttttctagc tcttattttt aatataaaat ttttataaaa
     4561 ataaggctag aatttattta agaaatttca aggaagaaat atgcatggaa aaatagctat
     4621 ttatatggat tctacaggac gtggaaccgt tacaaactca gcaaatacct tttttgactt
     4681 taatcgccaa atttggaatg ataaaaaaag tatgccaagt gttggtatgc ttgtggaatt
     4741 tagaactctt tctagcgaaa aaaaagcaga agacggcaaa ctcgttcaaa caagcaaaac
     4801 cataacaggt ataaaacctt caaaatttca agaattcaaa gaaggggatt ttatcactga
     4861 gcatgatttt tggaaaactg ataatgatga tgaattagaa gacttgcaaa actcaagaag
     4921 aagtgcttat ataacagaac tctatagaac aacagacttt gacactatag aaaaaattcc
     4981 tctttctttt actatacctc aagctataca aaaatatttt gcccatgaaa ttttatccgt
     5041 agaaacgctt caagccaatc tacaagatga aaaggaaatt ccttgtatac ttgattatct
     5101 tatacttaaa agatttttat ttaaagctta tgatacttta atttttatgg ataatagcat
     5161 agaccaaacc caatttagcg cattaaaaag catcatgatg catttagaga attcatacaa
     5221 gcaaatgatg gctgatcaaa aaccaaatat cactaaaatt tttaacgaaa cttttttatc
     5281 tttgcagtgt cattaccaag ctttagtagc caccatagat acaagaaaca atcgtctagc
     5341 ctcacttgaa gcacaaatga aaactttaca atctgaaata aatcttaaaa gcaatgcgac
     5401 cgatgcagac cctgaaaaac ttaaagcacg acaagaaaga ttggctaaac tacaaaaaga
     5461 agcagaatac tacagaacaa cactaaaaag acttgatgct ataagggaag atttttataa
     5521 gaaaaattac aatattttcg aaaatgcttt taaactttca cgagaaaagc tctttaaaaa
     5581 aattgtcaca ggtttaaatc tatgcgcaac cataatggat gttaaaattt ggcacttgtc
     5641 tttaaaatca tcaggggtta aaaattctta ttttactatg agtaatatag aaaattcttt
     5701 ctgttctctt tcttttgcag aacattactt aagtcgctta aataaatccg ctctaaatcc
     5761 ttttgatcaa aaacttttag tgtatattca aaaaatcaca aaagaacaaa gaaaaaaatt
     5821 tttagttgtc acatcggatt tagatttatt atgcaaatta aaaattgaaa acttttcaca
     5881 aaatccgtat tatttagtaa aatacgcacc taaaaaagtg aattatcagt ctttaatgcg
     5941 tgataacacc tttgatatag tctatattga tgaaaaacat gtttgggaaa atgttgccga
     6001 tattatttta caaggaaagc attttgacaa atcaggaaaa accaaattta aactgattta
     6061 agacatagaa atttaagcta aattaagtta taatttcctt gcctaaacag tttgtggtat
     6121 ttaaagtgat ccaacacatt tttattaact gcgattgtgt gatttaccgt gttctgtggc
     6181 atcgtttgag ctttgaaaaa agtgagaagt tgcagccttt aaaaattacc tagcggtttt
     6241 ctttgacttt ttggggtcaa tctttgttaa acggctgttt gggtttaaaa ggagatataa
     6301 atgaaaataa tgattttggg tagtggtgca agagaatatt ctattgcttt agccttaaga
     6361 agagtagaca aaaatttaga gttttatttt gctcctggaa atggcgctac cgaaagtctt
     6421 ggaacaaatt taaacctaaa agatccagta gttttagcaa cctatgcaaa agaaaaaggt
     6481 tttgatcttt gtatagtagg aagtgaaagt tttttagctg aaggggttgt agatattttt
     6541 aaacaacaag gacttgctat ttttgggcca agtaaagctg ctgcaatgct tgaaacctca
     6601 aaatctttta tgaaaagctt tcttaaaaaa taccgtatca aaacagccaa atttttaaac
     6661 acaaatgaca ttgaaaaagc aaaaaatttt atatatagtt taacccctcc tatagtagta
     6721 aaagccgatg gactttgcgc aggaaaaggt gttatcatag ctaaaactca tgaagaagcc
     6781 atagaagaaa cagctaaaat gctgagcgga gaaagctttg gagatgctgg aaaactcgtt
     6841 gtaattgaag aatttttaga tggttatgaa ttaagcattt ttgcagtatg tgatggcaat
     6901 gattttgttt tacttcctgc agcacaagat cacaaaaaat tactcgataa tgatcaaggg
     6961 ccaaatactg gtggaatggg tgcttacgct cctagctctt tggcgaatga aagcttgctt
     7021 agaaaagttc aaaaagatat tattttacca actttagcag gtatgaaaaa agaaggagcg
     7081 gaattttgtg gtgttttatt tataggtgct atgatcgttg gaaataaacc ttacgtatta
     7141 gaatttaacg ttcgctttgg cgatcctgaa tgtgaagttt taatgccttt aatcgaagat
     7201 cctttagagc ttattttagc tgctactcaa agacgcttaa gacactcaaa aatcaaaatc
     7261 aaaaaagaat ttgcagtagg ggttgtatgc gcaagtgaaa attatcctta caaaagttca
     7321 ccaaaaagtg aaattaccgt aaataacatt cctgaaaact ctcatatttc ttatgctgga
     7381 gtaagcctag aagatggcaa attaatggct gatggtggaa gagttttagt ttgcgttggc
     7441 acaggaaaaa gtatagaaga agcgcaaaaa aatgcttata aactttgtga taatgtaaat
     7501 ttcaaaggaa aacaatacag aaaagacatc gctcatcagg ttctgaaatg aaagaaaatt
     7561 tacaagaccg cttagagcgt gaaaatctaa aaatagcaag ttttggaaaa agagttctag
     7621 cttttttaat cgatgatatg gttatttctt tgattgtgtt tatcattttt tatgatcgtc
     7681 taatccaagc aaaagattta tttgaaacaa ctcaaattgt aggaaatttt taccttggct
     7741 tcatcttgct tcattttagt tatcaagcaa tttttactta tctttatgga gcaagtttgg
     7801 gaaaaatatt atgcaaaatt atcatcttgg atgaaaatct tcttgacaaa cccaatctca
     7861 ttcaaagttg catcaggtct gccgtaagac aagttagtgc tatggcgttt atgcttggat
     7921 ttgcttgggc tttaagcaat gatttacgca aagcttggga ggattatcta gcaaggacaa
     7981 tagtagtcga tgtggcgtaa attttcccta ttgctaggaa ctagcatagc tttaaatgca
     8041 gcacaagttg atatttacgc tcttgatgca aaaaaagaag gtgatattct tactgcgaac
     8101 aatgatgtta ttattttttc tgatttttat ttcatcactg ccaataaagc aatttacaat
     8161 gaaaaaaccg gagatgttga gctttttggc gatgttaaca tcctaagggg acaaaacgaa
     8221 agatcacatt ctgattatgc taaaatcaac ctaaattcca atcaagccga ttttagtaat
     8281 tttttctttt ccaataacaa tcttgaagta tggtttcaaa gcaaaacaag ccatctaaat
     8341 gataaagtct ttgaaagcaa agtttcagca gtttcaagct gcaatgttga agatcctgat
     8401 tgggaaattc gtttttcaaa aggctggctt aaccgggaaa ccaattttgt tcatctttac
     8461 aatgcaagat tatatgttaa aaatacccca gttttttatc taccttattt tggatttagc
     8521 gctgatactc atagacaaag cgggctttta atcccaaaaa tcgttttaaa aagtagcgaa
     8581 ggcttatact atgaacaacc tatttatata gccactcaag aaaattggga tttagaactt
     8641 gatccacaaa ttcgaacaaa ccgtggtttt ggactttatt ctactttaag atttcttgat
     8701 tctccatatt caacaggaga attaaatttt ggtgctttta gggaaaatag ctcctatttt
     8761 cacgatgaaa atttgaaaaa tcaaacccac tatggaatag aactaaaata ctcaagagat
     8821 gatttaatca aatctttact cagtgataat tttcaagaag gcctatggat agatgcaacc
     8881 tatctcaacg atgtggatta tttaaattta ggaagtaggg attatcgaga tcttaactcg
     8941 cttgtaacct ccaaaatcaa ttatttttta gctgatgaaa acaattttta tggagcttat
     9001 gcaagatatt atatcgacac atctaaactt agcaacaata caaccttgca agaatatcca
     9061 agctttcaat atcatagatt tttaaataac ctttttgatg aacgcctgcg ttattcattt
     9121 gatgcttcat ttcataattt ttaccgacct gctggttctt atgcaaatga gctaaattta
     9181 gacttgccta tctcgtatca caacgctttt tttggagact ttttacactt tacttttaca
     9241 gaaagatttt atgcttcttt tgtaaattat agcaacgatc ccgaaagaaa ccatgagcat
     9301 tatttcagaa acactcatga ttttaatctc tacaccgatc tttcaaaagc ttatgaaaat
     9361 ttctttcata ctttaaattt aggggtgaat tacattttac caggagcaaa atcaggtaaa
     9421 atcacgcaag attatcttga agaatacgac aaagaaaacg aacatacaag tctttatact
     9481 gtgcaatatt tctataacaa cgaaggacaa aaaaaactca aacacagaat ttcacttgac
     9541 tatctcaata aacaaaatga attctatgaa cttgaaaatc ttttaactta ttattttaat
     9601 gaaaacatca atctcaacag cgaagtgctt tactcttatg agcaaagtcg ctttaccaat
     9661 gtcatcagcc aaatagaagt caatacaaat tcaaaattta attggatgtt ttctcatgct
     9721 tatcaaaacg atgagtatgg aaaatatagc tttattggta caagagcaaa ttatattacc
     9781 acacctaatt acaatttatt tggtggaatt tggtttgata ctcaaagagc tcatgcaaac
     9841 atgtgggaac ttggctatac ctaccaaaga aaatgttgga actattcttt aatgtataga
     9901 gaaagaatcg atccacaact cacaagtggt ggcatcacag ctaaaaatca aagcggagtt
     9961 tattttattt tcaacttcta tcctttagga ggagtaaaat acgatttctc tttagcagaa
    10021 agtgaaaaca aaatttaaaa aggatgaaat ttgctaaata ttttaaaaaa ttttacgaat
    10081 ttattatctg gtaaaaaagg aaaaataatg caatacagca tagaaattaa caaaaataca
    10141 gaaatatttg atatagacaa agtcgccaaa caagctgccg gtgctgtttt aatgagacaa
    10201 ggcaaaagcg ttgttctagc tacagttgca agagaagaaa aacaagttga agaagatttt
    10261 ttacctctaa ccgtccaata catcgaaaaa gcttatgccg caggaaaaat ccctggtggt
    10321 tatgtcaaaa gagaaaccaa gccaagcgat gcagaaacct taacagcacg cattattgat
    10381 agaagcttac gccctctttt tccaaaaggc tatgcttatc cgactcaaat cgttgtgatg
    10441 gttctctcag ctgatcctaa agtagattta caagtaatga gcttaaatgc cgcaagcgtg
    10501 gcactttatc ttagtgatat acctatgaaa gctccagtat gtggtgtgcg tataggaaag
    10561 atagatggaa atttcatact caatccaaac aatgaagagc ttcaaaatag caccctagat
    10621 ctctatgtag caggtgtaaa agatgagctt ttgatgatag aaatgagagc cttacctgat
    10681 caaaaagaaa atgaaatctt tatcgaagct ccttatgctg atgttttaac tcaaaccact
    10741 tcacaaaata tgaatgaact tagcgaagat gaaattttag aagctctaaa tttagctcaa
    10801 aaagctatat taaatggttc aaatgcttat gaagaagcct ttagcaaaca caaaaaaaat
    10861 tctcaaatcg aactaaaaaa tgagattgaa catcctgaaa ttttagcttt tatagaaaat
    10921 aatttccaaa aacaaatcaa agaagccatc aatcaaatgg caaaaagcga aagagcaagc
    10981 gaactaaata aaatcgctaa agaaatttta aatcttgaaa tcactaaaga ctggagcgaa
    11041 gaaagtgtct taaatacctt agttaaagtc aaacgcaaac ttattcgtga gcaaatttta
    11101 aatgaaggca aaagagctga tggtagaagt ttaaacgagg ttcgtcctat tagtatagaa
    11161 accaacatct taccaaacgc tcatggttct tgtcttttca ctcgtggaca aactcaagcc
    11221 ctagtggttg caaccttagg cggagaaaac gattctcaaa tgatagactt gcttacagaa
    11281 aaaaatccta taagcgaacg ctttatggta aattataatt ttccaggttt ttcagtaggc
    11341 gaagcaagtc ctatcaaagc tccaggaaga agagaactag gacatggaaa tttagccaaa
    11401 agagcacttt atccaagtgt ggatgaaaac tatccttatg taatccgctt agtcagtgaa
    11461 attttagaaa gcaatggctc aagttccatg gcaacggttt gtggcggatc tttagcctta
    11521 aaagcagcag gagtgccaag cttaaaactt gttgcaggag tagccatggg gcttatcttt
    11581 gaagataaca agtatgctgt tttaacagat atcatgggac ttgaagatca tgatggggat
    11641 atggacttta aagtagcagg aagcaaagac ggcgttactg ctcttcaaat ggatataaaa
    11701 ctaggtggaa tcgatcaaga aatactaaaa caagctttat accaagccaa agaaggaaga
    11761 attcacattc taaatatcat ggaagaagcc gccaaagaaa tcatagtcaa tgaagaagtt
    11821 ttacctaaac ttgagctttt tagcgttgat ccttcaaaaa tcgttgatat cataggacaa
    11881 gccggaaaaa ccatcaaaga aatcgtagaa aaatttggcg tttctataga cttagatcgc
    11941 gaaaaaggtg aagtaaaaat agcaggtagt caaaacgagc aaatcaaagc cgcaaaagac
    12001 tacatcataa acatcacaag ctctcaaaaa ggaactaaaa aaggccctaa agacaaagat
    12061 atatcaggct ttgaacttgg gcaagaattt caaggtattg ttaaaaaaat cgctcctttt
    12121 ggagcctttg tggaacttaa aaatggtgtt gatggtttat tgcatagttc aaaaagcaag
    12181 catcttaatt taagcgaaaa ccaaagctta aaagttaaaa tcagcgaaat taaaaacgga
    12241 aaaatttctg tggatttgtg tgagtgagtg aatttctaac tcatcctttt gagccttttt
    12301 ttgacaaaga ttctaaaatc ttaattttag gatcttttcc ttcggtaaaa tcaagacaag
    12361 atggctttta ttatcaacac ccaagaaatc gtttttggcc tatactagaa acactttttg
    12421 atgtaagatt agaaaatatc acagaacaac aagccttttt aagaaaaaaa catatcgctc
    12481 tttgggatgt acttcaaagt tgcaagataa aaaattcaga tgataaaacc ataagttatg
    12541 caaaagccaa tgatttaaac ctaatccttt ctcaaaccaa aattcaagcc atttttacta
    12601 caggacaaag tgcttataga ttttttgtta aattccaccc tcacttagaa gccatagctc
    12661 taccctcaac ttctcctgca aatttaaatt tttcttttga acagctttta caaaactatg
    12721 aaataatcaa aaaatttaca aaataacaaa ctaagcatta ccccccccca agtaaaacaa
    12781 gaaaaaagct atttaatatc tagcttttgc gtgttatcct tgaattcaaa ttccactctc
    12841 ttagctccaa aacctttagc aatagcttct aaagtatcct tagcactttt atgaattttg
    12901 ctttctaaat tttggataag atttaaagac aagtctttaa cctcatcttt ggcttctttt
    12961 atgagtttgt ttttatcact ttcgctaaaa ctaatccccg tactattgat agaatcaggc
    13021 agtaaaaaag gtaaaaattt agcatttttt tcatcataaa atttcatatc tatgatgctg
    13081 tgtttgtatc tacactctgg catgatgatc ttataagcat cgtcccctaa aggcaaaata
    13141 tcaaagtttt tatcccttaa atcatacaag aaagtgatct caaattcaaa aatcaaagca
    13201 atctgtcttt cactcaaaga ccatcctaaa agatttttcc aaattccatt aaaagcgctg
    13261 tcttttttag tgacaatctc tttactaaaa acttgaaaaa cacttaattc tcctatggat
    13321 ttaagctgca tgatatcgct aaaactttgc gtactttttt cttctatttt agggctttta
    13381 tactgcctaa aaagcactac aaacaaaagc acaagcaaaa tcatcactaa aacaaataaa
    13441 atcatttcca ttttaaacct ttctaaattt ataaaccttg atttgaaaag atatattttt
    13501 tctcaaacgc caagaaaata aaagcattaa tgataaaaat caaacacaca aaagtaaaaa
    13561 caaattccac gctaaaatgt gaagccataa tccctccgcc aaaagctcca caaaaatttc
    13621 ccaaaaattg acaagtttga ttaaaaccaa aaatcacact taaattttta gcactcacac
    13681 tttttttaag caaggcattc acacaaggca aaagcccccc cccccaagtc ctacacctat
    13741 aagtaaacgc acgaaaataa gcgtataaac attacttact acagcctgca aataaaagca
    13801 aattccacaa aatatcaaag ctccaaaaat aatcttacta ggccctatct tatcggcgat
    13861 ttttccaagt tttggtgcga aaaaaagatt gctaatccca cttgcagcca ctactatacc
    13921 cgcccaaaga gccaaatttc caccttgatg aatttgctca acatagatac ttaaaatcgg
    13981 catcactcca aaagtaccaa attgtatcac aaaagtagtg ataaaaagaa cgataataag
    14041 ggttttgttt tctttcactt tttgagtatt tttcttcgcc tctttttgaa tttttctctc
    14101 atggatgaaa aaataaatcg tcacaaaaga acaagcgatc aaaaaagcca ccatatcaaa
    14161 aaccgtacta atactaaaaa attcagtcac aaagccacca aacaaaggcc caagcaaact
    14221 tccacttata gaagccgtag aaagagttcc taaagcataa gcgacttttt ctttaggtgc
    14281 tatcacagca ataaacacaa cagcagcaga agtaaaaccc gaaattatcc ctgttaaacc
    14341 ccgcacaaaa actacttcta aagcactatg agcaaagcta agccataaag ttaaaaccga
    14401 catcccaaaa cttgcacgaa gaagcatatt tttataacca tactttgcac ccaaaaaagc
    14461 ccacaaaggt gaaaaaacag ccataaaaag tggagtgatc ccaaaagcaa gccctgagta
    14521 aaacgctatt tcactcgtat caacatgtcc tagttctttg atataaaaag gcaaaatcgg
    14581 agcgatttga ctaagcccca tacttgtggt aaaaacacca aaccaacaca caagcaaagt
    14641 tctattgaaa ttttccatgg atttattgta tgatattttt tataattttt aattaaaact
    14701 caaggataaa aatgaaaaaa atactcttta tatgcttagg caatatatgc cgttcgccta
    14761 tggcagaatt tatcatgaaa gatcttgtca aaaaagcaaa tttagaaaaa gaatttttta
    14821 taagcagtgc tggaacttca ggagaacacg atggagaagg tatgcactat ggcaccaaaa
    14881 acaaacttgc tcaacttaac atagaacaca aaaacttcac aagcaaaaaa ctcactcaaa
    14941 agctttgcga tgaaagcgat tttttaatca ccatggacaa ttctaacttc aaaaatgttt
    15001 taaaaaactt caccaacacc caaaacaaag ttttaaaaat cactgatttt agtcctagtc
    15061 taaactacga tgaagtccct gatccttggt atagtgggaa ttttgatgaa acttataaaa
    15121 ttttatccct agcttgtaaa aatttacttg tttttttatc aaaataattt aaaacaacat
    15181 atattacttc tcgtttactt tttaggctta tacttctaaa cgaaccgaaa aacattcata
    15241 agaaaaactc cttaaaatta cacgcctagc ttaaatccct ttagctaggc ttttctttag
    15301 atgtttttat ccttcggatt taaaattttt actattttaa gtgcttctta agaaaaaact
    15361 ccaaatttat gtgctacaat tacaatgttt tattaatttt tgacaaggag aattctcatg
    15421 aaactagtta aacttagttt agttgcagct cttgctgcaa gtgctttttc agcagctaac
    15481 gctactccac ttgaagaagc gatcaaagat atcgatgtat ctggagtatt aagatacaga
    15541 tatgaaagta gtaatccatg gagcaatgcg aattttggtt ctggtatttc tggaaaacaa
    15601 gatcataaat acagagcaca agttaacttc agcggtgcta tatcagacaa ctttaaagct
    15661 ttcgttcaat ttgactacaa ctcacaagat ggtggttatg gcgcagatag catcagcaac
    15721 acaagtgata ctttatcagt tcgtcaatta tatttaactt atacaaatga agatgttgct
    15781 acaagcgtaa tcgctggtaa acaacaatta aacaccatct ggacagataa cgctattgat
    15841 ggtttagttg gaacaggtat taaagtagta aacaacagca ttgatggttt aactttagct
    15901 gcttttgcaa tggatagctt caatgaagct tcagatacta ctgtaacaat tactcaagat
    15961 agctctcaaa aaattacagg agttcaattt aatcgtggaa atcctaaagg tgatagtgat
    16021 gtaagtggtg ctttagattg gagtaaaaat atttatggtg ctgcagctat cggctcttat
    16081 gatatcgctg gcggacaatt caacccacaa ttatggttag cttatatgag tgataatgca
    16141 ttcttatatg ctttagatgc aacttatagc acaactatct ttgatggaat taactggact
    16201 atcgaaggtg cttacctagg aaattctgta gataataaac ttaaagatag attagatgca
    16261 gcaaatggta atttctttgc tttaagaggc actgttaagg taaatggttg ggatgcaagt
    16321 cttggtggtt tatactatgg taaaaaagat aaaattactg taactacaat cgaagatcaa
    16381 ggtaatcttg gctctttact agcaggtgag gagattttct atactagagg atctaaccta
    16441 aatggtgatt taggtagaaa tatcttcggt tatgtaactg gtggatatac tttcaacgaa
    16501 gcagttcgcg ttggtgctga ttttgtatac ggtggaacaa aaacaaatat aattggtcaa
    16561 ggtggtaaaa aacttgaagc tgttgcaaga gtagattaca aatactctcc aaaacttaac
    16621 ttctcagcat tctactctta tgtaaatgtt gatacagatc ctgaaagcac tcatcatgat
    16681 gctgtaagac ttcaagctct ttacaaattc taagaagctt ttaagtctaa cttcaaggcg
    16741 gggttttgct ccgccttttt ttatgcctga tttttaaaac ttaaatttat ataaaaagat
    16801 tttcccaagc taaaaagctt taggaaaatt aagacttaaa ccaattagcg attttttcaa
    16861 aaagtccttt ttgctcttga tgcataccat ctttgatacc aaaactttca cttagttttt
    16921 ctaaaagttc tttttgttca tcgtttaaag aagttggaaa tttgatagaa atttgaacga
    16981 tttgatttcc tatgcgagaa ctatgaacat cttttacccc ttctttttca agtataaatc
    17041 tttgtccatc tttagcaccc tttggtaaat ttaaagtcgc ttcaccgcgt atggtgggta
    17101 cttttatact ttgtcctaag atagcctggg taaaaaacac tggaaattct atatatatat
    17161 catcatcatc tcttataaaa gtatcgtctt cagcagcgat gatcttaaca tacatatccc
    17221 ctctagtgcc attttttaag atattgcctt tagcattgac acgaagtttc atacctgtat
    17281 ccacaccttc tgggatatta agctcgacac tatctttgct ttcattataa cccaaacctt
    17341 tacaatcact acatttttca ctagcctttt ctccaattcc ttgacaatca gggcaagttt
    17401 gtgcaaaagt gataaaacct tgagaaaccc caacctgtcc tctaccttga cactttggac
    17461 aagtttgaag ctttccatct ttagcccctg ttccattaca agttttacaa gagcatttat
    17521 aagtaaagtc tatatttttc ttacaaccaa aaaccgcttc tttaaaactt aattttaaat
    17581 taacgataaa atctgaaggg attttctcat catttgaact ttttctacga cgcgatgagc
    17641 caaagccttc tccaaaaaaa ctagaaaata tatctcctaa atcctcaaaa ccaccaaaac
    17701 ctgagctact agaaccaaat ccaccgcctt ttaaagcatc ttttccgtat ctatcataaa
    17761 tagctcgctt ttcatcattg cttaaaactt cataggcttc attaacaagc ttgaatttat
    17821 cttctgcttc tttatcacct tggtttctat caggatgata ttttaaagcc atttttctat
    17881 aggctttttt tatggtttct ttatcagcat tttgcgtgat ttcaagaatt tcataataac
    17941 ttatttccac attattcctt taaaaaattt aaaattttac tagaatttta attttaaaaa
    18001 ttcaaaaata taattttagc aaaaataaaa tcaataattt atcaaatttt aaataaaatt
    18061 atgtaaagat tttaaagact acataaaaat ttacaaggac actagaatga ttaatgtgtt
    18121 gatgatagaa gatgatcctg actttgcaca attattatct gaatatttag cgcaatttaa
    18181 tattaaaatc acaaattttg aaaatcctaa aaatgcttta aatgtgggta ttcaaggcta
    18241 tgattgtctg attttagatt taactttacc tggaattgat ggtcttgaag tttgtagaga
    18301 aatccgacaa aaaagcaata ttcctattat catctcatcg gctagaggtg acttaagcga
    18361 taaagttgtg gggcttcaaa tcggtgctga tgattatcta ccaaagcctt acgatccaaa
    18421 agaaatgtat gcaaggatta tgagtcttat tcgtcgcaca aaaagagttg aacacactaa
    18481 taatgaaaat attaactctg ctttcaaaat tgatgaaaga agacatgaga tcacctatga
    18541 agataaggtt ttaacactta ctcctgctga atttgaaatt ttagaatacc ttatccaaca
    18601 acacggatat agtgtttcaa gagaacagct tgtaagtcgc tgtaaaaatc taaaagataa
    18661 agattctaaa agccttgatg ttatcatcgg tcgcttaagg gtaaaaatag gagatagttc
    18721 aaaatctcca aaacatattt tttctgttag aggtatagga tataaactga taggatgaca
    18781 aaaaattatt ctattcatac caaactgatt attttatttg ttgttacttt tttcttggtt
    18841 tgtgtgcttt ttatcgttct tttaaaaata gaagggaata cctataatga agaagaaagt
    18901 ttaaaacaag aaaatcttat aaaaaattta ctcatctcct atgaaaacac ttcaggtgtt
    18961 gaaataggag cttatcttgg aaacagcggt tttaacgctg tacaaaatcc caatcttgta
    19021 aaagctataa gaaataatgg acaatcactt tttaaagcag gcggagagct ttgtactctt
    19081 tcttctttaa aatatcatag caatctttat tttgatgttc aatgtaaaga ttttgatggc
    19141 ttgtatgaag aaaatactag tgatagggtt tataatcttt tattgatagg atttttctct
    19201 ttttctttgt tggttgtttt tatgtatttt tctgtattaa aatccttaga acctttaaaa
    19261 aaattaagaa gacaagttgc cgaagttgca aattgggaac aacctgattt tctagactat
    19321 caagaagatg aagtaggcaa gatcgccttt gaatttcaaa aagctttcaa gaaaaaccaa
    19381 gaattaatcc aatcaagaca acttttccta agaacaatca tgcatgagtt aaaaacccct
    19441 ataggaaaag ggagaattat ttctgaaatg atcaaagaag acagacaaaa agaaagactt
    19501 atcgctatat ttttacgcat ggattctttg atcaatgaat ttgccaaaat cgaaaattta
    19561 ttttcaaaaa actacaactt acactttaaa cctagtcgtt ttagcactat acttgaagaa
    19621 gctaaagaac accttatgat agatgatttt aataaagttg taaaagtcga tataagatat
    19681 gacgctttaa tcaatgttga tatggaaatt ttctctgtaa ttttaaaaaa tcttatcgat
    19741 aatgccttaa aatactcaaa caatggcact tgtgagcttt tttgttgtaa agaatgtttt
    19801 accattaaaa atccaggcaa acctttagca gagcctatag agcattatct tgaagctttt
    19861 acaagagaaa aacacaatca agtcaaaggt atgggactag gactttatat agtttcagag
    19921 gtatgtaaac tgcataattt tgatttgatt tatttttatg atgatggaaa gcattgcttt
    19981 aaaattttct ttggagataa agaaaaataa tggtaaaagg cctggaaaaa ttcaatgaac
    20041 ttgttgaaag ttttgcaaat ttacctacca taggaaaaaa aaccgccata aggcttgctt
    20101 atcacctttg cataaataat caaattgatg gtatgaaact cgcacacaat atagaaaatg
    20161 ctatccgctt tataaaacct tgtgagcaat gcggtgcttt aagcgaaaat gagctttgcg
    20221 aaatttgtag cgatgaagaa agaaataaaa acattttatg tatagttgaa agcccaaaag
    20281 atatattaac actcgaagag agtcaaagtt acaatgggct atattttgtt ttagatgagt
    20341 taaatgaaga aaaacttgaa aaactaaagc aaatcatact taagctaaat atctctgagc
    20401 tcatttttgc attgacacat agcattaatt ctgatgcaac tatctttttt atagaggata
    20461 aatttaaagg cttaaaccta acttttagta aaatcgctca aggaattcca agtggtgtaa
    20521 atttagaaaa tgtggattta atctctttaa ataaagctat gaattttaga acaaaaattt
    20581 agtaattttt ataagaaata tcggctaatt cttgcaaaga aaaatccgca atcttttcat
    20641 aagcaaaacc ttccttgctt aaaaaatcaa gtaaagtttt ttccatgatt ttagctcctt
    20701 gtataagctc atctgaaagc ttaaaactca tcgcttcaat acgctttggc acacaagcta
    20761 agatgtgtgt tttaggcaaa tctcctgcaa gttccatgta ttgtaaggtt tgaagcattt
    20821 ctatttcatg ggcacttcca ctccagctaa ttttattagg catagcatca taaggaaaga
    20881 aaaatacatc tcctatactc gcaccttgcg cttctataca gtctaaaacg ataagtctat
    20941 cgtatcgagc gatgatatag ctaagctgca aagccaaagt tccaccatca acaaaatcta
    21001 aagtaaattc agaatgagtg aatttgtagt ttttttcaag ttgtttgcaa agatgaacgc
    21061 ctaagccttc atccgcaaac atgatattac ctattccaag gactaagaat ttcaatgctt
    21121 ttcttctttt acaaatttat atccgctaat aatagcatcc atagcaccat ctttaccttt
    21181 tactgcgtta aaaatcgcca tgtaaatatg tactggcaca aaaatcataa ttacccacat
    21241 caaaattcta tgataagttc ttacatcggc caaaccgccc attgcagctt caagcggtct
    21301 taaaatatga tataaaagcc cacctaagcc ctcatggtaa gtatgagtat aaagaataag
    21361 ccctgtaaga atgataccta atatcacaag ataaaagaaa aaataagtta caaattgcaa
    21421 aggattataa acccctttta aatgcggatg ttttcctaag aaaatgtaaa attttacttg
    21481 ttctatccat aatttgatat taaaaatatc ccatacactt ctgcgttctt ttgcgcttac
    21541 cttatcgcag aaaaacaaat atactttaaa aataatacaa gcgattaaaa caaaacccac
    21601 cgcttgatgt actaagcggt attttgcttg cataaaattt acgggctcac cgttactaat
    21661 agggctttgg aacacatagg aaagataata ccctgtgcca ataagaatca ctatagcaat
    21721 agctcttacc cagtgcgtta aacgcaaacc tatgctaaat tcatattcag cttttctttg
    21781 caatttttct tctttgtttt gcatgaaagc ctccttataa attgacattc actttatatt
    21841 cacttagatt attgccctta gtatccatta catgcaccgc acaagcaata caaggatcat
    21901 aagagtgaat ttttctaatg atttcaagtg gttgttttac atcagcgatt ttaagtccta
    21961 tcaaacattg ctcataactt ccacctacgc catttgcgtc ttttggactt gcattccaag
    22021 tagaaggcac cacagcttgc caattttcaa taacaccatt tttaattcta caccaatggc
    22081 ttaatgttcc gcgtggcaca tgccccatat agcgtccttt gtattcttta gaattatcga
    22141 tcacataagg agcacaagta ctctggtcta cttttaaatt ttcaactaaa ttattaaacg
    22201 cttttaaagc attatttgca acgatttttg cttcaataca acgagcagct gttcttccaa
    22261 gtgtgctaaa tacagcattt aaaggaagtc ctgtttcttt taagaactca tctaccacag
    22321 gaacaacatt ttgattacct ttagcataat ttacaacgat atttgctaaa ggtcctactt
    22381 gcataggatt tccttcatag cgtggagctt taatccagct atatttaccc ttagtatcaa
    22441 acactttaga atggacatta tttccatgat gatctacgct ttctccatct acaagtcctg
    22501 tataatttgg atttgttttg ccatcataag gatgtaaagg ttcattgtct gcataccaag
    22561 aatgagttgc ctcttcagta atcttatctt cttctacttc ataaaccttg cttaaatctc
    22621 catttttgat aataccactt tcaaaaagcc attcatctct tccgatttgg aattctttaa
    22681 aggtataaag attatttacc cctatatcat ttaaaacact tgcttcatgt gcataagctt
    22741 ttcctgccat cacaagatca ggataatacg cacgattaac aaagtcttgc acttcttgga
    22801 atttaaccat atattcaccc attcttgcag gatcgagtaa atccataacg caagttacac
    22861 caccaacggt taagctttgt ggatgtggat ttttagctcc aaaaatcgcc atacattgag
    22921 caatgattct ttgaattctt aaacattcta gatagtgaga aagaacgatt aaattttgct
    22981 caggacttaa acgataagtt ggatgaccat agtacgcatt agcaaaaggt cctaaatttc
    23041 ctttatctac aaaagtttta agtctttgtt gcacttcaag aagtttatcc gaacctgttg
    23101 cataaggatt tggagtgtat ttaaaagctt catcgcttgc ttttttaaca tcagcattta
    23161 aagcacttac cacatcagcc caatcaagcc catgaagttg ataaaaatgc acaatatgat
    23221 cgtgtaaaaa taaagccgca ttcattaaag ttcttgttaa aagcgcattt aaaggcggag
    23281 taatacccaa agcattttca acagcaacta tacctgcttt ataatgtgaa aaagtacaaa
    23341 ctccgcaaat tctttgcgtc ataaaacccg catctcttgg atcacgccct tttactatgg
    23401 tttcaatacc acgccacaaa gtagagcccg cataagcttc ttttaccaca ttgttatcat
    23461 caacaacaac ttcaactctt aaatgccctt caattcttgt aataggatct acgattattt
    23521 tttgactcat ttttattcct tatctttttg catggaagat ataactgcgt gtgctgctat
    23581 agcaacgcct gtgagtgtaa gcacacctat accgatttta tctgaaacac tatccgcacc
    23641 caaaccaaaa acagtatcaa atttacgact agccataggc tcttcaaaag gtcccatagt
    23701 atcccaaaaa ttaggctcag aacaacctat acaaccatgc cctgcttgaa taggccaaga
    23761 agtgtgctgg ttaaatctct ctcttgagca gttattaaaa gtataaggtc ctttacaacc
    23821 tactttataa agacaaaaac cttgttttgc tccttcatct ccaaaagcat gtacaaattc
    23881 acccgcatca aaatgtccgc gtctttcaca aagatcatga attcttaaac cataagccca
    23941 ttttggtcta ttatacacat caagtgctgg taactcacca aataataaat aatgaagtac
    24001 attacccact atattttttt cacttggagg acagcctgga acattgatca cagttttact
    24061 tgttactttg cttaaaggct gcgcgttgct aggatttggt cttgcggctt gaattcctcc
    24121 aaagctagaa caggttccta tagcaaaaat cgccaaagca ttttcacttg ccatttttga
    24181 aagctcatag cctgtttttc catgtgcacc tatggttaaa aaatgctccg tatcacccat
    24241 agggatacca ccttcaacca ttaaaatgta tttattttta tgcttttgaa tggcattttc
    24301 taaattttct tcagcttgcc aacctgctgc agccatcact gtttcgtgat attctaaaga
    24361 aatataatca aaaatcaaac tatcaatcgt tggagtatca cttcttaaca aactctcact
    24421 acagcctgta cactcagcca tatgaagcca cacaacagga agcctatcag caagctcagc
    24481 agcttttgcc accataggag taaaactcgc tggcaaagcc aaaaatgccg tcatagcacc
    24541 tgcccatttc ataaaatccc ttctagaaaa acctgacttt tctaatgctt ttgtaatact
    24601 atcattgtct ttcaaagaag gaagcttttc aagagtcgat aaacgcgact ctatttgatg
    24661 ataatcaatc attatatttc ctttgtaaca tgaaatttat tctctataat aataaaataa
    24721 aggaagttaa aataaagtta aaaacttact atcataagca aatattagca tcactcttaa
    24781 ttaaagctta atcataagcc ttttttaagt ttgcgaatca aaaatcttgc aggatgaata
    24841 gcgtggatgt attttttttc taaacacaag ggttcattat ttatcaatgc acacaaatac
    24901 cttgccgcta aaacacttgt actaaaaccc cttgacccat gagcaaaatt aaaatacaaa
    24961 ttacaagaca ttttagctgg tttttgctcc ttattttttg tccataataa agctttatat
    25021 tcttctttat aaaacgcttc atcataagca tttccaacta tcataaagcg atcactcgaa
    25081 taagatctaa aacctacttt agaacctatg atttctaatt ttgtattttt atccataaaa
    25141 tcggctatat tttctatatt ttgtttatca tcttcttctt ttgattctaa acttgcatta
    25201 agcctatcat aacttgcacc aattacttgc aaatcatctt ttacagggca aatataagcc
    25261 ttagaagata aaggaaatgg ggtatctaaa aaaggtttta gatgtgtaac ttgacctctt
    25321 actttgctta atttcatctc atcataaaaa acaaaatctt ttgtatctgc acccatagca
    25381 taaatcaaaa ccgcataatc acttttaaca atatcatttt taaattttaa agtaaaacac
    25441 tcattttcaa atttataagc ttgaaattca tgattaaaat atatacaagc tttacttttt
    25501 tcaaaaagat ttttaaccaa attttttgga aaaatcactc caccctcttc taaaaaagct
    25561 tgattttttg aaattttaaa caaaacattt tctctttgtg tgtcaaatct ttcttgcatc
    25621 aaatcattat gtgcaaactc caccacaccc ttaaattcta aatctaaaat ttgtctataa
    25681 aaacggcttg cttctataaa agaaagctct gaaaactccc ctaaatttac cttaggtttt
    25741 aagattaaag agcttaaaat tccactttca tttccacttg cacccttgcc taattctaaa
    25801 tatttttcaa aaacatctat ctcaaaaccc cttaaactaa gttcataagc taaaacagcg
    25861 cttgatatac ccgcaccaat aatagctact tttttatttt ttaaagatga aaatgttctt
    25921 gaaaaatacg cttctttgtc tttaaactca agctcatttt ccaaataagc tttaatcatt
    25981 tctctttttc taaaaccttt ggttttttct actctaaaac catatttttt taaatttttt
    26041 tgcaaaaaac ttgccgaaga aaaggtgcaa atttgtgtat tttttttaga aagtcttgcc
    26101 acttcaaaga ttaaattttc atcaaacatt tgcaagtttt tatttggaga aaatccatct
    26161 aaataccaaa catcagcttt aaaatccaat tcttttaaaa cagctatatc ttcaaaaaca
    26221 agatctaaaa aacaatcttc aaaataaaaa cgataaattc cttctttagc cttaggataa
    26281 aattttaaaa attgttctaa aagctcttta aactcttcat aaaattctag tttttgataa
    26341 atttctctta attgttcttt ttcgatataa aaagcttcta cgctaatata aaaaagtttt
    26401 ttaggacgct tagaaggggt agtttctaaa aggcgtttca aagtaagaaa aaaatttaaa
    26461 cctataccaa aaccactctc tgcgataata aaattttctt gatttttcca ttcaaaagaa
    26521 tgagtgtaaa caaatttgct ttcatttaag ccatctttgg aattaaaata aaaatcatca
    26581 aaatccaaag aaaaaggagt attatcctta aaaattagct tagctttttt catcggttgt
    26641 tataaaaata actctcaact ccatcggcaa tacccttaac caataaatct tgaaaagctt
    26701 tattggcgat tcttttgcct tcatttggat gtgtaatata gccaatttca atcaaaattg
    26761 caggcatttg tgcacctact aaaacccaaa aaggtgcttc tcttacaccg ccatctacaa
    26821 ttttatactt tttgcgtgtt tgagtgagta tatttttttg tacatcaatg gctagtttat
    26881 ttgaagcaac gattttttca cgatttaaga aatttaaaat actttgtttt gagaaataat
    26941 taatctcttc aaaatcccct tgattttctt tttctgctgc ctttttactt ctttcacttc
    27001 ttgcaggact taaaaagaaa gtttccacgc cttcgctact tttggctttt gtggcatttg
    27061 gtgctgcgtt agcatgtata gaaataaaca aatccgctct tttatcattg gcatatttgg
    27121 ttctatcacg aagattgata aatttatccg aacttctagt ataaagcact ttataaccgc
    27181 gttttttaag ttcatttcca agttttaaag ccgtacttaa aactatatct ttttctttta
    27241 aacttccttt tttatcactt aaagcaccgc tatcttttcc accatgcccc gcatcgataa
    27301 ccacaagctt tcctgatttg taatttgtat ttaaagtttt actagaactt tgagttgctt
    27361 ttttgtttgc attttgattt gtagtttgta tataaaaacc taaagtgaga ttattattat
    27421 ccaactcctt taaaagttta aattctttag gagcactcaa aaccacacga acggtttttg
    27481 gattgtattg agtaactgta atcacatttt gtccaaaagt aaagcttttt ctattacctt
    27541 ctaacacacc cttaaaactt acaacatatc ggaatttttg atctttggta tcaaatactg
    27601 ctatttcttt ttcatccaaa tcatcgctta aatttaacac cacagcatta gaaattttat
    27661 ccacatctaa aacatataaa ggtttttgat tttctttttc attattggtt tttttatctt
    27721 gtttttttgt ttctaaaact ttggttttaa tttctgtttt ttgatcttgc tttttctctg
    27781 aaattttact aacttgctca gtcttttttt gactagtagt ttcttttgaa aaaattattt
    27841 tttcttcttt aaaagatata tcaataggaa ttttttcttt agcataaacc actatgcgta
    27901 tggttttggg attaaactgt gaaatcacta aacgatagtc atcaaattta aactcttttt
    27961 tacccccttc taaaacccca tcaaaatcac taataaaacg atagtttcct ttttcgtcta
    28021 aagcaaaact ttttaattga tccttatcca aatctgcatt tagttcaaac tctacacctt
    28081 ggtttgtttt acttgacttt aaaacataaa ttttatcatc gctttttgct ttagaaacga
    28141 tactgctctt tggtgcttgc gaagttttag aatttgtttt ttctgtattt tttatttgtt
    28201 cgttagatga ttttttttca tttttttgaa ctgtttttat aggttcaaaa gttgtttttt
    28261 cagtgtcttg agaaatattt tgaaccttaa tatctttaat aacagccttt cttaaagcat
    28321 taatacttgc ttcacttata ccactttctt ttaactcatt agcatatgac ttgtcatcta
    28381 aatttaaagt atttgaactg atgatcaatc tttttaaaat ttcaatttta gttttttcat
    28441 cttcatgaat aacactttgt atataaaggc ttttgagctg atggtgaaat tttacttgca
    28501 cttcactttt agaaccgata aaatttttat caaaatttgc aagttcattt tcataagctc
    28561 caaaaagagt tgtgaaagca aatactaaaa atacaaaaat tttagccatt attcaccatt
    28621 aaccaatttt tccataagtt ctttaacact gataagctta tctaaacgat atccatttgc
    28681 acctgtaaag aaaagtcctg tttctttttt gcctgaccac gcatcaaaaa gcctatctgc
    28741 tatacaatac cctactttag tcgcctcttt tccacgccca caaggcgcta cacaattgct
    28801 tatacaatta atctttggac ccattctttt atctaccaaa tttaaaagat tggttctaac
    28861 tccacgagca ggatagccca caggagattt aataagctct atatcttctt ctttagaagc
    28921 tagcaaaacg cttttaaact cttcactcgc atcacattca aaagttccta tgaaacgcgt
    28981 tcccatttga acaccactag cccctaaaga aatagcattt tctatatctt ttttatccca
    29041 aattccacct gcagcaatca cgggaaaaga cccccaattt ttagcctctt ctaccacagg
    29101 agcgattaat ttttctagct gataatttgg atctaagcac tgctcataag taaaaccttg
    29161 atgacctcca ctttttggcc cttctaaaac cactgcatca ggcaagcgat tgtaacggct
    29221 ttgccatctt ttgcaaataa tttttaaagc ctttgcagat gaaatgatag gcactaaagc
    29281 cacatcagga aaatctgcag taaattcagg taaatttgta ggaagtccag cacctgaaac
    29341 aatcacatta aaaccaacct cacaagcatc gcgtgctatt cttgcataat cattacttgc
    29401 acataagata ttacacccca aaggtgcatc gccacaaact tttcttgcat tattaatcaa
    29461 agcttgcaaa cccttgcgtg agtaaaaatt ttcacttcca taaggcttag cgtttaattc
    29521 tttacttgca tactttcttt cttcataata tcctgttccc acagaagaaa taatcccaag
    29581 tccaccattt aaagaaactg cagaagctaa tctatcccag cttatgccta gtcccattcc
    29641 cccttgaaaa atgggatatt ttatagtatg ttttcctatt tgtaagggtt gtaaattcat
    29701 tcttttacct ttaattttgc aaattttctt ttacctattt gtaagatgta ttctccttgt
    29761 tctaaataca tttgctcgtc gctaactttt tgagaattta cacttactgc attagcactg
    29821 atgcttcttc ttgccgcaga agtagaactt tccaaaccac attcaaccaa agccttagca
    29881 agccaaattt ttccttgtat ttcaaactca gccatatcac ttggcaaagc attttgagaa
    29941 tgaattctat caaattcaga cttagcatta ttagcctctt ctttggagtg aaaacgctct
    30001 gtaatctcta aagctaaatt ttctttagct tttttaggat gtaaattgct ttgttctata
    30061 tcttttttta tttgcgcaat ttcttctaga cttttttgac ttaaaagttc ataatatcta
    30121 aacatcaatt catcactaat acttaaaatt ttagcataca tatcattagc tttttctgta
    30181 acaccaatgt aattatttaa actcttactc attttgttta caccgtctaa accttcgagt
    30241 aaaggcatca taatcacagc ttgttctttt cctatgttat aaactctttg aagctgtctt
    30301 cccatcaaaa gattaaattt ttgatccgtt ccacccattt caatatcgct ttttaaagcc
    30361 acactatcat atccttgaag taaaggatac aaaaactcgc aaatcgaaat aggactttgc
    30421 tctttaaatc tcttggtaaa atcgtcacgc tcaagcattc tagctacact aaaagttgaa
    30481 gtaagctcta ctatacccgc agctccaagt tcattaagcc aagtagaatt aaacttaatc
    30541 tgtgtttttt ctttatccaa aaccttaaaa acctgcgttt cataagtttt agcattgatt
    30601 aaaacttgct ctttatccag ctttttacgc gttgcacttt ttccacttgg atcgccaatt
    30661 tgtcctgtaa aatctccaat caaaaactgc acaatagctc catgtttttg caaaaaagcc
    30721 atttttgtta aaaccacgct atgacctaaa tgtaaatcag gcgctgtagg atcaaacccc
    30781 gcctttataa agaaattttc acccttttca taataatttt taattaattt ttctattctt
    30841 tcttcatcaa taagctctgc acaaccacgc ttaacttctg ctaatatttt ttttatatcc
    30901 ataataaacc tttttaacct tctttataag catcatttaa agatgtaaaa tctaaaatct
    30961 tgcaacgaga ttttaaccta tccttgacac tatctggatt aatattatca ggaatttcca
    31021 ttgtaatctc aaaataatct accgccgaat ttaaatcact tgataaatta attgttaata
    31081 gatttatctg cattttagct aaaaatgcca aaaattccgc taaaacacct tttttatttt
    31141 ccaaagaaaa aatcaattta taagatttag ggatgttaga atcccatttt ataaatacca
    31201 tatcttgatt attatctatc attttatcag ctctatcgca aagcttatga tggacaatag
    31261 cgttaccacc tttaacaaaa gctaaaacag catcacctct ttttggatgg cagcaaaaat
    31321 caaaatccac attagcaatt ttatggttac aatatagagt aaaatttcct attttttgtt
    31381 ctttaatctc atatttatca aaccaatatg acttcttggc gtatttttta agaccattaa
    31441 ctatatcttt caaataggca ctatctgttg ctgcttgtct aatacgtctg gctaaatttt
    31501 ctttttctat ccaagtttca attctgtttt tatcaactcc aaaaataaaa cttaacatat
    31561 taatagaact tgctagatta atctctctga ttttttgctt gcaaaattcc cttatacttg
    31621 cttttgcttt tcctgtttta acactatcta tccaagaaca gcgataaaat ttatcattgc
    31681 tagtaaccac tcgcacaata tcgccatttt taagctcggt taacaaaggc actttaatac
    31741 gatttacata agcacttttt gcatgaagcc ctactttggt atgcacttca taagcaaaat
    31801 caagaaccgt tgcaccacga ggcaaagtga aaatttctcc cttaggagaa taaactgcga
    31861 catcttcaac ataaagacta tctttagcat attcataaag ttcaatagca ttataatctt
    31921 ctgcattttc aagattgttt atactttgca ttgaaatatc tgtaagccaa tcaagacgag
    31981 gcgcaaccac actgccatct tctttatatt tccaatgcgc tgctatacca aattccgcaa
    32041 ttttatgcat atcaaaagtt cgaatttgtg cttctataat acttttagca tcaaaaagtg
    32101 tggtatgtat ggtttgataa ccattttgtt taggcaaggc tatataatcc ttaaaacgcg
    32161 aaaccaaggg attaaaatgt gtatgtaaaa ttcccaaagc taaataacaa tcacttactt
    32221 tttcaaccaa aattcttacc ccaagcaaat caagaacttc ttcaatacca atgccttttc
    32281 tttgcatttt aagataaata gaatagctat gtttaatgcg tttttgaatt tcaaaactac
    32341 cttgtctaaa gccattgctc aaaaataaaa gttcgatttt ggaaataaat tcatttaaac
    32401 ctaattgcat ttcttgatta ttagagttga tataattgtc aataagctta tactcatctg
    32461 gcataagata tttaaaacta agatcttcca aataattttt tatgcttgaa ataccaagtc
    32521 tatgggctat tggggcatat acaactaaag tttcttcgct gattcttttt tgcttatctt
    32581 ctcttagaat atcaagagta agcatattat gcagcctatc gcataacttc acaatcaaaa
    32641 ccccaacatc ttcaatactt gctaaaagca tatttctgaa agtcaaggct gatttagtta
    32701 aacttttttt agattttgat gaaatgagat tatcttctct aatttctata attttagtaa
    32761 gccctaaaac aagttttaaa acctcagaac caaactgctc tctaagttct tcttcagtac
    32821 agtttgtatc ttcgatcaca tcatgcaata aagcagctaa aatattgctt ttattttcac
    32881 ttaaaaatcc aaccagtgtt gctactaaaa gaggatgtac cgcataaggc tctccacttt
    32941 ttctaaactg cccttcatgg caaaatatac agtaatctac cgctttttca agaatggcat
    33001 catggccaca aatttcgaaa agcaaaacct tagcagcttc taaatcttta caatttttta
    33061 cattatcgat taattgttca agcaataatt cttcatcgat tggtttcaac taaaccctct
    33121 aaagtgattt tattttctgc aatttcatat aaagctatat ctgcaagttt atttttattt
    33181 ttatcaaagt ctaccaaagg ggttgctcca tttgccaatt gttccgctct ttttgctacc
    33241 actaaagaaa ggcgatatct atcattaccc attttttcca aagcttttgc cgctacttct
    33301 tctattcttt tatccataat tttctcctta attattttta acggttgaac aaaggctagt
    33361 atcaccttgt atgattttaa gtaaattacc ctcttcaaac atattacaaa ccacaatagg
    33421 aagtttgtta tctttagcta aagctatagc tgtatcatcc atcactttaa tattatcttg
    33481 catagcctca tcataactca aagtatttaa aaatactgca tcatcaaatt gttttggatc
    33541 tttatcataa actccattaa cttttgtagc ttttattacc atatctgcat caatttccac
    33601 agctcttaaa atagctgttg tatccgtagt aaaataaggg tttccagtac ctgcagcaaa
    33661 aaccacaaca cgaccctttt ctaagtgtct ttgcgctctt ctcataatat aagtttcaca
    33721 aaatgcttcc atctgaatgg cgctttgaac cctaacttca agtccagagc tttccaaagc
    33781 ttcttgtata gcaatagcat tgataaccgt agcaagcatc cccatatgat ctccacttgt
    33841 ccttttaatc aatccgccct tagcagcact tactccgcga ataatattac caccgcctat
    33901 aactatgcct acttctattt gattttttat aagttcttta atctctgaag ctatgaattt
    33961 taaaatagaa ttttctatac caaagccatt ttcacctgct aaagcctctc ctgaaaattt
    34021 tactaaaact ctttttctct cttgcattat ttctccttat ttaacttgaa attatatttt
    34081 aaattccatt aaatttagct aatttaagct aatgagttcc aaaggattga tatgaaaatt
    34141 tttttgagtt acttcaaaag taagatcatt ttttattcta cccactacgg cacctttttt
    34201 aatattctta ccaactttaa tattaggagc aatcttatct aaatgtgcgt atattgtatg
    34261 tatgccatta tcatgttcaa caataacaac tcgagctagc atactagtat ctttagcaaa
    34321 aactattttt ccatctagca catttttaac aactgcatcg cttttattgc ttcttaaaac
    34381 tacattctcg ttaaaaattt taagattgta aacaggatca acataatttc caaatttttg
    34441 cttcacagta aaagaatcca atggagctat ggtttttttt cctgtgtaac gcttgactga
    34501 acttccttga tagcttgaac ctaattgtct tattttttga ttatttttta ctattttagt
    34561 atcatttttg tttaaatttg caccttcttt attattaata atttttaatt gatttaatgt
    34621 ttttctaagc tcttcttgct gagcttgtaa gtcatcgagt ttttttgcat atatggttcg
    34681 atctgttttt tgtttattaa tttcgctaat ttgtttttgt tttaaacttt gaagcttgac
    34741 taattgagcg ttgtaatcct taagactatc attgattttc ttaatctgag cttgtttatc
    34801 atcaataagt ctgcttactc cctcataatc tttagaaatt ttaaaaattt cttcatttaa
    34861 aactttgttt aaactcccta aaatttcaaa agccacaaaa ctttcttcac tttcgatata
    34921 gccttgagga ataggtaaat cataggcaaa atctttagcc atcaaagata taagcttact
    34981 ttccatattt gatttacttt taagcaaatc ttcattttgg cttgcaaggg tgtttaactc
    35041 ttgattttga gccttagcac ttgcttcaag cttagaagtt tgtgaattta agctttcaat
    35101 ttgcaaactt aaatctttca aacttttttc accatttaaa atatcactag ccaaatcttc
    35161 aagtttttta tttagctgtt cttgtatgcg tttattttct tctaaacttt ttgttttttc
    35221 atttatagtg tttgctaaac ttatatcaac aaacaaaaaa aaacaaaaaa agataagaat
    35281 attttttctc atcttttaac cttgaacata accgtattta cacacaacaa gcaaataaac
    35341 aaagtagcta aaaaaattaa agtcaaatgc aaaataaaat taataggtgg aaaaataata
    35401 tctacagcct ttaagctttc ttggataata gaaagatcaa aaatttgggt aaaaaaggca
    35461 agtaaaataa caaaagcaat aaaacaatca accacaacca ccttataaag cataaaagat
    35521 ctaaacaaaa acggagctcc aaataaacac ataatttcaa tacgatcggt atgttcataa
    35581 agccaaattc tcatctgctt taaaaacaaa acaaaggcaa gtaaaataat gataaacaaa
    35641 aataaccaaa aaacaaattt catcaaaata agcaaagagt atatcttatc atgggttttg
    35701 gaaaaagttt caaccttact aacacctaca atatttaaaa gttgattttt aatcgaattt
    35761 agttcatttt gatcgggcaa agaatttaat tttaaagtat aaaattttgg tagagaatct
    35821 tttaaaactt tcaaattctt ttcagaaaca tcatttttca aacgatcaat taaaccctta
    35881 ggatctaaag attcaagtcc agcaaaaaat ggtacttttg tttttactac attctgatca
    35941 agttcagttt tgctgacaac tataatatta taatctttat taacaagttc ttcataatgc
    36001 tttaaagttg catttgtaac caaaataaat tcaaaagcaa acatcataaa aagtaaaggt
    36061 aaaattaaag ataaatgtgt tttaaaaaat ttcattcatt tttccatttt ctatattaaa
    36121 acgacgataa tccactctta aattactagg aattctatgt gttaccacta taacacaagt
    36181 tcctaaaagc tctctagcag actttaaaag agtccatata atatcagaag aatactcgtc
    36241 caaatttccc gttggctcat cgcaaagcaa aagctttgga ttatgagcta aagccctagc
    36301 catagcgacg cgttgttgct caccaccgct aagttgatta ggcaatttat ctgctttaaa
    36361 agttaaattt acatgcttta aaagcttagc agcttgatca tgacatactt ttttgctata
    36421 acctttaatc attaaaggca acataacatt tttttcaaca ctatattctt gtacaagttt
    36481 ataatcttga aaaataatcc ctattctttg acgtaatttt aaaagttcta aatttccaat
    36541 tttattcatc aaagatccac atacttcaag tttaccagaa ataggttcta aatctccata
    36601 aaaagacttt aaaagcgtac tcttaccact cccactttta cccgtaataa aaacaaaatc
    36661 atcatcctta aaagcaaaac tcgcttcttt aataactagt tcatcataac ctaaagtaag
    36721 tttatttgct tggattaaat taggcatcct ttttccttaa tttccctttt taaattttta
    36781 aattatgctt tatttttgct taattttcaa gaaaaattat attttaaact gaacttttaa
    36841 aatttctttt aattcattta tcgctttaat attttcttga attttaaatg gctctttaaa
    36901 agcaaaatca atcgttttat caagatgcaa ataacaatgt tcaggcttat taaaagctcc
    36961 aaaagcaacc tttaaaagca aattctcatc ttgtttatag atgctttcaa aatgcaagaa
    37021 aaaatcatct ttttttatag taatattttt aaagttctgc tctatttttt tcaaatcctc
    37081 tttagaaaat ttaaccgatg agagattaaa ttcatttaac tcatagtttt tacactcttg
    37141 gttaaaattc cacacccaaa gatcatatat atttttttct tgctttttcc atctatcttc
    37201 atatttgctt gaaatttcta aattttcatt ttttctaagg ctaaattttg gagcaggaaa
    37261 agtcaaaaat tgttctaaag taaaattaaa atactcaaaa ctatctgttc taagctcaaa
    37321 acgaccattt tgaactaaaa ccctagcaca ttctttgcaa aaatctttcc caataactcg
    37381 cctatgaggc tttttgtccc aaggaacagg gaaatgtaaa aaaatctttt caactgattt
    37441 tgattttaat acactcaata acaatctcgc atcactttgg attagcaaaa tattatttac
    37501 attttgtgct ttagcaagtt tagctacttg agttaaagct gggttgtaaa tttccacccc
    37561 taaaattaaa acatttggat tttcttttgc ttgataaagc aaatgtcttc ctgatccaaa
    37621 gcctatttct atataaattt taccttgaag cttagacaaa agctcatcaa aattatcaac
    37681 gataaatggt gttttttcaa ttaaagcatt gtttttaagt ccaaaagctt cattgataat
    37741 atcctcacaa aaaccttctt taaagatttt taaagccttt tgcaaataac ctattttaga
    37801 aggttttgta tgtttatcgc ctttaatcac aaaaccattt tgtgcttttt taatctgcag
    37861 aaaaaaactc tcttcttgaa cctttgtata aataagacta acattatcat tcttagcaag
    37921 ccaaagaaat tcaacatcat ccttgctaca aggcagattt atttctttga tctttttgct
    37981 tttaaaattt ggcactattg agccgcctta actttgtttg aaggttctga acgaagcccg
    38041 gctaaatcaa tagcaataac ttcataacta tattccaccc ctggcaaagc ttttacatct
    38101 tttagtcgct tttctttaat acctttaaaa actgcatttt gctccccgcc atagcgtctt
    38161 acttcatact caacagctct agtatcatta tcactccatt ctaaatttat cccttcgctt
    38221 gtgctttgag ccaaaataat actaggagcc aaagggttgc ctaaagtttt accttctaca
    38281 ccatcttttg gcataggact ttcaagacca tctttatcca ccattgttac tttataatac
    38341 ttgcttttac ctgctccttc tactatatcc tcataagaat ttttatcagt ctttgccaaa
    38401 acactaaaag gaaggaagct tgagctcgta gaataaactt tataataaga aaaatcttca
    38461 tacgtaggag catcccaagt taaaatgatt ttactagaac catctgtgct agcacttaaa
    38521 tgctcaactt gaggaggtaa agccttgctt gtagaactta caacttgact tgacccactc
    38581 tttatcccat taaaactcac agcaataatt ctataacttg aattttcatt aggctttaaa
    38641 tcactatcga tgtattcagc gtttaaacga ttttttactt ctgcaatttt tttaaattct
    38701 ttatcatcac ctttggttct ttcaataata taagaatcaa ccctaaaatc aggatgcgga
    38761 cgccaaataa gtttaatacg attaggcaaa ttagtcacag cttgaacaaa aggaacagct
    38821 tcaagtcttg gagctgtgct cacttctata accttgccat cttctgaaat ttgtccttgc
    38881 tcattaaagc ttttcatcat ataacgatac ttagtaccag gctctaattt agtatctaca
    38941 taatgagttt gaaacttatc tttaatagtg cctacaagtt taaaatcagg attttcatca
    39001 ctagaacgat acagataaaa tcctttaata ttttcattat ataaaggctc ccattcaaaa
    39061 gcaatattac tcatatcact aagacttttt aaactttcaa cctttggcaa gctttcattt
    39121 acagcaggct ctttacttga agctagcgaa ttcatttgcg aaacactaca agcgctaagc
    39181 aaaagagtta aaaaactcaa gtaaaaactc aagcgaaatc ttttcatcat tctctcctaa
    39241 attaatttgt tcaaacataa tatttttaaa atcttccatc aaaggtgctt taacaaaaat
    39301 ttgttctttg gtttttggat ggataaaata caaaaaataa gcatgtaaca ttatcctaca
    39361 atcatactta cccttataac catacaaact atcacctaaa atatagcgat ttaaactagc
    39421 caaatgcgct ctaatttgat gagttcttcc tgtaaaaagc ttagcagcca tcaaagttaa
    39481 attttcagtt tttactacat ttataaaagc tgattttgcg tttttgctga atttattttc
    39541 cttatctatg gctatttttt taatagcatt agaaggcgaa cgcattaaaa atttttctac
    39601 tataatttta tcttctttta gtggcaaatc aattaacgca aggtaaattc ttcccatgct
    39661 tttatctgca agctgttcac ttaatttttg atgggtgaaa ttatttttcg ctattagtat
    39721 agatccgctt gtatctttat ctaatctatg gacaagacca gctcttatct ctcctcctaa
    39781 atttgataaa gtatattttt tttctattaa ccaatccacc aaagtggcat ttttaacgct
    39841 acttgctcca tgaacgacta aatttgaagg tttatttaaa acaagcaagt cttcatcttc
    39901 gtataacaca tcaatatcaa aatccacttc aaactgaggt tttatctcat tgcaaagctt
    39961 taaacttgca atagaaacaa tatcaccatt tttaagctta aatgaatttt tatcttgaat
    40021 tttatcatta acctgtacac aatctttttc tataagtaaa gcaacttgat tgcgactttg
    40081 gtttaatttt ttagccaaaa atacatcaag ccttgaattt tcatctacta aaaaagtttg
    40141 cattttttcc ttagaggttt tgataaattt aaaattttag tttataatta tagctttata
    40201 ttaccaactg aaggcaaatt ttgtttagat tagatagaag aattttaact cattttgact
    40261 atatgcaacc cattttattt ttacccataa ttcttatttc atttttctta atctttgaag
    40321 ctaatccttt tttagcagaa aaacaatttg tttatgcctg tgtgggattg tttgctttta
    40381 tggttttttt cttctttccc ataaggaaat ttatttggat tattcctgtt gcttattgga
    40441 ttaatatttt tttattgcta agcgtagata tttttggggt tgaaaaatta ggtgctaaaa
    40501 gatggcttga aattcctttt actcacttta ctatacaacc ttctgaaatt tttaaaccta
    40561 gttttatttt aatgcttgcc tatcttattt atcaaaatcc tcctccaaaa aatggataca
    40621 aacttaaaca attcatcaaa cttagctttt acatcatctt gccttttttg ctaattgcaa
    40681 aagaacctga tttaggaagt gctatggttt tactacttgt tggttttgga gtgcttttta
    40741 tcatgggagt tcattataaa atttggttaa gtattgttat agctataagt gttagctctc
    40801 ctattattta tacacatctt ttaaaaccct accaaaagca aagaattcat gattttattt
    40861 cagaaaaacc aagttatcaa gtagcccaat caatgatagc tattggaaat ggtggtttaa
    40921 ccggaaaatc tcaagatgaa gctacgcaaa ctcattttaa atttttacct atttcaacta
    40981 gtgattttat tttcgcttac atgatagaaa gatttggatt tattggggga ttgacattaa
    41041 ttatatttta tattttactt atttttcatc tacttagttt aaattataaa cttaaagatg
    41101 attattttgc tagagttgct attaattgtg ttgcattatt tatttttatt tatgcggcag
    41161 taaatatttc aatgactata ggttttgcac cagtagttgg gatccctttg ccttttttta
    41221 gttatggtgg aagttctttt actattttta tgattttttt tggaatttta cagcatttaa
    41281 tcacttttag atatttttgg acggatataa aggctaaata aaatattttt aagcattaat
    41341 aagatataat tttatctttt aattcaactt aggcggattt atagctcagt tggttagagc
    41401 aaccggctca taaccggttg gtcgcaggtt cgagtcctg
//
LOCUS       DAQSLY010000003        34936 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.003, whole genome shotgun sequence.
ACCESSION   DAQSLY010000003 DAQSLY010000000
VERSION     DAQSLY010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34936
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.003"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            5..1237
                     /locus_tag="R2H98_000089"
     CDS             5..1237
                     /locus_tag="R2H98_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023021.1"
                     /translation="MKNIFKHKDFLQTRKEPYAIYLAINTNIKSYNNICPSEQYFWKF
                     NDMNELECYNPKFGIYLGKIVFDKKGNKLIPKYIPAKFENLEEEVKKIKNPLWLANKN
                     PNYIKPKFYDGMGGGYYFESPNNLEYQCKIEKDTQILSQEQIISYVKELYSKNTMIIK
                     NYIDTINKNHGIKPFVFSDEIYDQLGEVGILTKEQANNFKDKSYIKKNPILLAMLDYL
                     AKQNKKDEDYLITFDDEYFYAYLVWSLKDFLLELSYGLFQDETKLLFNPAAYMDDTKI
                     DYKNLNEEINKRYEKILLDMGFEGENGYFNDYYDYGFGNNGIFKFNIYDYFAYDEIGV
                     RPYVSPRSPFDSPNFVYSDGNYHGDAKLIPSALGKYYFELSYQKGVYIELLHPYYPSI
                     KDLPEGWDNKMLEKANLK"
     gene            complement(2306..2755)
                     /locus_tag="R2H98_000090"
     CDS             complement(2306..2755)
                     /locus_tag="R2H98_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023022.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(2771..6016)
                     /gene="ccsA"
                     /locus_tag="R2H98_000091"
     CDS             complement(2771..6016)
                     /gene="ccsA"
                     /locus_tag="R2H98_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEE9023023.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYIENANRKNPNARGVFDKEIIKLDERANIVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMIV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(6034..6729)
                     /locus_tag="R2H98_000092"
     CDS             complement(6034..6729)
                     /locus_tag="R2H98_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023024.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(6716..7486)
                     /locus_tag="R2H98_000093"
     CDS             complement(6716..7486)
                     /locus_tag="R2H98_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023025.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKAASLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(7483..8535)
                     /locus_tag="R2H98_000094"
     CDS             complement(7483..8535)
                     /locus_tag="R2H98_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEE9023026.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGVIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLYIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(8535..9431)
                     /locus_tag="R2H98_000095"
     CDS             complement(8535..9431)
                     /locus_tag="R2H98_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEE9023027.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(9450..10559)
                     /locus_tag="R2H98_000096"
     CDS             complement(9450..10559)
                     /locus_tag="R2H98_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEE9023028.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(10581..11696)
                     /locus_tag="R2H98_000097"
     CDS             complement(10581..11696)
                     /locus_tag="R2H98_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEE9023029.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVGNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(11727..12161)
                     /locus_tag="R2H98_000098"
     CDS             complement(11727..12161)
                     /locus_tag="R2H98_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEE9023030.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(12170..12361)
                     /locus_tag="R2H98_000099"
     CDS             complement(12170..12361)
                     /locus_tag="R2H98_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEE9023031.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(12414..12920)
                     /locus_tag="R2H98_000100"
     CDS             complement(12414..12920)
                     /locus_tag="R2H98_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEE9023032.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(12929..13960)
                     /locus_tag="R2H98_000101"
     CDS             complement(12929..13960)
                     /locus_tag="R2H98_000101"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEE9023033.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAIVIDNTSHF
                     RMEKDVPLVVPGCNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(13960..15261)
                     /gene="flgR"
                     /locus_tag="R2H98_000102"
     CDS             complement(13960..15261)
                     /gene="flgR"
                     /locus_tag="R2H98_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEE9023034.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(15318..15767)
                     /gene="flgQ"
                     /locus_tag="R2H98_000103"
     CDS             complement(15318..15767)
                     /gene="flgQ"
                     /locus_tag="R2H98_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEE9023035.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(15743..16258)
                     /gene="flgP"
                     /locus_tag="R2H98_000104"
     CDS             complement(15743..16258)
                     /gene="flgP"
                     /locus_tag="R2H98_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEE9023036.1"
                     /translation="MKKIYFMLAIAGIFAGCVSSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(16327..18915)
                     /gene="gyrA"
                     /locus_tag="R2H98_000105"
     CDS             complement(16327..18915)
                     /gene="gyrA"
                     /locus_tag="R2H98_000105"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEE9023037.1"
                     /translation="MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(18956..19531)
                     /locus_tag="R2H98_000106"
     CDS             complement(18956..19531)
                     /locus_tag="R2H98_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEE9023038.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(19528..20172)
                     /locus_tag="R2H98_000107"
     CDS             complement(19528..20172)
                     /locus_tag="R2H98_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023039.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEEQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(20249..22045)
                     /gene="lepA"
                     /locus_tag="R2H98_000108"
     CDS             complement(20249..22045)
                     /gene="lepA"
                     /locus_tag="R2H98_000108"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEE9023040.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVKKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            22172..23446
                     /gene="cmeD"
                     /locus_tag="R2H98_000109"
     CDS             22172..23446
                     /gene="cmeD"
                     /locus_tag="R2H98_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEE9023041.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSNTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            23443..24183
                     /gene="cmeE"
                     /locus_tag="R2H98_000110"
     CDS             23443..24183
                     /gene="cmeE"
                     /locus_tag="R2H98_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEE9023042.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            24186..27203
                     /gene="cmeF"
                     /locus_tag="R2H98_000111"
     CDS             24186..27203
                     /gene="cmeF"
                     /locus_tag="R2H98_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEE9023043.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKINSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKN
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(27227..28033)
                     /locus_tag="R2H98_000112"
     CDS             complement(27227..28033)
                     /locus_tag="R2H98_000112"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEE9023044.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(28034..28753)
                     /locus_tag="R2H98_000113"
     CDS             complement(28034..28753)
                     /locus_tag="R2H98_000113"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEE9023045.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(28753..29004)
                     /locus_tag="R2H98_000114"
     CDS             complement(28753..29004)
                     /locus_tag="R2H98_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023046.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(29008..30453)
                     /locus_tag="R2H98_000115"
     CDS             complement(29008..30453)
                     /locus_tag="R2H98_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEE9023047.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            30593..31756
                     /gene="ftsW"
                     /locus_tag="R2H98_000116"
     CDS             30593..31756
                     /gene="ftsW"
                     /locus_tag="R2H98_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEE9023048.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            31753..32781
                     /gene="murG"
                     /locus_tag="R2H98_000117"
     CDS             31753..32781
                     /gene="murG"
                     /locus_tag="R2H98_000117"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEE9023049.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(32752..33915)
                     /locus_tag="R2H98_000118"
     CDS             complement(32752..33915)
                     /locus_tag="R2H98_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEE9023050.1"
                     /translation="MASFKKIFWINVIIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGGISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIIGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKAHKKINLFINLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(33923..34774)
                     /locus_tag="R2H98_000119"
     CDS             complement(33923..34774)
                     /locus_tag="R2H98_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9023051.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMVEGKI
                     FKVELNK"
     gene            complement(34837..>34936)
                     /locus_tag="R2H98_000120"
     CDS             complement(34837..>34936)
                     /locus_tag="R2H98_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEE9023052.1"
                     /translation="SVAWFIERFKEKYEQTPKQYQKTKNLYFLSKN"
BASE COUNT        12257 a         6149 c         4480 g        12050 t
ORIGIN      
        1 agccataaag aatatattta aacataaaga tttcttacaa accagaaaag aaccttatgc
       61 tatttattta gccataaata caaacataaa aagttataat aatatttgtc ctagcgagca
      121 atatttttgg aaatttaatg atatgaatga gcttgaatgc tataatccaa aatttggcat
      181 atatcttggt aaaattgttt ttgataaaaa aggcaacaaa ctcatcccaa aatacatacc
      241 cgctaaattt gaaaatttag aagaagaagt taaaaagata aaaaatcctt tatggcttgc
      301 taataaaaat cctaattata ttaaacctaa attttatgat ggtatgggtg ggggttatta
      361 ttttgaaagt ccaaataatt tagagtatca atgtaaaata gaaaaagaca ctcaaatttt
      421 aagccaagaa caaatcattt cctatgtgaa agaactttat agtaaaaaca caatgataat
      481 aaaaaattat attgatacaa tcaataaaaa ccatggcata aaacctttcg tatttagtga
      541 tgaaatttat gatcaattag gagaagttgg cattcttaca aaagaacaag ctaataattt
      601 taaagataaa agttatatta aaaaaaatcc aatattgctt gctatgcttg attatttagc
      661 aaaacaaaat aaaaaagatg aagattattt aatcactttt gatgatgagt atttttatgc
      721 ttatttggtt tggagtttaa aagatttctt attagagctt tcttatggtt tgtttcaaga
      781 tgaaaccaag cttcttttta atcctgcagc ttatatggat gacacaaaaa tagattataa
      841 aaatttaaac gaagaaataa ataagcgtta tgaaaaaata ttgcttgata tgggatttga
      901 aggagaaaat ggttatttta atgattatta tgattatggc tttggcaata atggtatttt
      961 taaatttaac atatatgatt attttgctta tgatgaaata ggagtgcgcc catatgtttc
     1021 tcctagaagc ccttttgata gccctaattt tgtctattct gatggaaatt atcacggaga
     1081 tgcaaagctt atcccttctg ctttaggaaa gtattatttt gagctttcct atcagaaagg
     1141 agtttatata gaacttttac acccttatta tccaagcata aaagatttac cagaaggttg
     1201 ggacaataaa atgctagaaa aagctaattt aaaataaata tgagcatcca tgaaaaaacc
     1261 tttttacaaa cttaaaagat tttatatacc ttgtggtgtg cttatagctt tgattatttt
     1321 ataagcttaa cttatcattt tttacaacga cctttagagc ttatcttttg ggatagatat
     1381 gatatatcga aattatctat taataacgaa gagaaaaatt ttaaaacaat gaaaactgtg
     1441 aattactcct actttcgcta acgcttagaa gtaggagctt cctaactaaa gccaagtatt
     1501 cttagctagc tcgaaaggct tcttgtttat agcttacacc taaattttca tataaaatat
     1561 taaaacttat acaaaaatct ttcataaatt gtttcagaag ttaaagaatt tgtttggtaa
     1621 attacattaa gggtttaagc cgcaggctga ccccctacgg ctaaattgtg aaacccctga
     1681 aaggaggtaa ctcaatgagg ctcataaaac tcattctagt ggttattata ctgctttgtt
     1741 tatttatagt caaggcatat taaccaagcg ccattttggg gaaactagag tgggttacct
     1801 gcggtatcaa acaaactttt aaccaagctt atctccttta tattgaatta ttttattttt
     1861 taatttatat ttttcttgct tatactaaaa gataagattc aattataaac aaaatgtatt
     1921 aagaagctaa agagtttgtt tggtataatt ataaaaggta gatgccaaag ggctgcaacc
     1981 ctttagcgtt aatttaccgc ccagaaggga agtgattaaa ttgctaaaca aaattatagt
     2041 aataattata ctactttgta taattatagt caagtgttat taatacttga tttcccattt
     2101 tttaaagggg agctataatt ttccctttgg cttaccaaac aaacttttaa ctaaacttct
     2161 cttcttctat tgattttcta tatttgaaaa attttatttt ttaaaaagta tatgttaaag
     2221 tatatgtttt ttgtattatt aatttttcaa gtatgttctt ttggttattt taactataaa
     2281 tcacagtcct cttgagcgca ccatattatt tatcttcttt aatttttctt ttagctaatc
     2341 ccatatgctc gtaagcatca atttcttttt tgtaagatcc agaaattttc ttaagttctt
     2401 tatttaagta acttactgtt tgtgcacttg cattaatatt tgcagccaaa gcagaaacaa
     2461 attctagttt cttttttgct gcttcatcta attctttaga agtttttgaa ccaagtttat
     2521 gtgtctgcac ataaagtttg gcaagttctt ttaattcaat atccgttagt ttaacatcgg
     2581 aagcagcaat tatcatttta tctaagtctg tatcaaattt tttagtcttt tcagctacat
     2641 gctgcttttg gctagttttt tgctttttaa ttgttttttt gccatcactt gtaataagat
     2701 aagcaatcac gcctaaaaac aataaaagcg ctaaagcagc acaaaaaata accaaaaaaa
     2761 tatggttcat ttaaagtttg cccacaaaat ttcgcttcct tcttgcaaaa aaagctaaaa
     2821 ccaccatcaa tgcaaatccc caataaacat aattaggaat ttgagccgct tcgcctgcag
     2881 cgtaagaatg aagtcctgtt aaaaagtaat ttactccaaa ataagtcata ataataaccc
     2941 aataagcgaa catactccat aaagcaaaca caaattgatt acaatatttt ggaatcattc
     3001 taagatgcaa aattgctgca taaaccaaaa tgctaactaa agcccaagtt tccttagaat
     3061 cccaactcca atatctcccc caactttcat ttgcccaaat tgctcctaaa aaatttccta
     3121 cagtaagcaa acaaagtcca aaaatcattg ccatttcatt aattcttgta gcctctgtaa
     3181 tatttctcaa aatattaaga ttatattttc catctttctt aagaaaacac attaagaaca
     3241 atgtaaagat accaagtaag gcacaaagtc ctaaaaatcc ataactagca gtaataacag
     3301 atacatgaat actaagccaa taagaattaa gcacaggaac aagatttgta atttgcggat
     3361 tcatttcgct taaatgcgca accattaata caacaccaga taaaatagaa gttaatgaca
     3421 aggctatagg actttttctg gagaaaaata tacccgacaa agacaatgcc caagctatat
     3481 acaccatact ttcatagcca ttactccatg gagcatgacc tgataaataa gcacgaagtc
     3541 caagacctac tgtatgaatt acaaaagcta aaacatttaa aacatatacc actttaaata
     3601 taaaagagat ttttaaattc ggtacgatca ttttagaaaa aacaagaatc aagagtaaaa
     3661 aacccgcaat taaatataca ggagcgagtt taacgaaaat ttcagcctta ttagaaaaaa
     3721 tttccatttc aaccttggtt ttactaggca tgactttata tcctattttt tcttgatatt
     3781 ctttgataaa tttcaagcct tcatcagctc tagtccaatt accatcttta aaagcatttt
     3841 ccacggcact aaaataattc tgtattaaag ccaaaacaat atgcccttca tcccccttaa
     3901 gagtagttac agcagaaaaa ggtgcaagcc aaacattatt tggattattt tgaacaggaa
     3961 taaatttaaa taattcacca ctaaaaacta aatttacaat attagctctt tcatctagtt
     4021 ttataatttc cttatcaaaa actcctcttg catttgggtt tttacgattt gcattttcaa
     4081 tatatttttg aagtttatat cggttattct catcaaagaa atctttataa gaaatatatt
     4141 tagcactagg aatttctaaa atatttgcaa tagcatcacg aactgcttga ttttgtggca
     4201 ttaaaataaa aggttccatt tgccatttat ctacatcaac gagcatggaa agcataacag
     4261 cgttagaatt ttgaccctta tagctatcac tttgatgaat tttttctaaa atttctcttg
     4321 atagcgtatc aaaaggcacc attcttccat ctgctgattt ttgaactatt aaagtggcaa
     4381 gagctttagc atgattagta tttaccacag gtaaggtcga atttaaatct tgagcaaaag
     4441 tcttttcgga accaaaagat aacaataaaa taaaaataat cacacttgta tgttttaaag
     4501 tgtctttatt aattaatctt gccaaagttc taaatctaga atgtggattt aaaaaattca
     4561 taaacattcc aagacaaagc agaaaataac ctatataagt tggtattttg cccggatctt
     4621 tatttacaga taaaacagtc cctttttcat cttgatcata agaactttga taaaatctat
     4681 agccatcata atctaaaaca ttattcataa aaattctata atcaaaattt tcattattat
     4741 tttttacggt aatttcactt gcataagaag ctggagacat agaacctgga taacgatcta
     4801 atacaaaatc tcttaaataa atatcaaaag gcaattgttc ataagaaagc gcccaagaaa
     4861 taaagaattt ttgatctgca agttctatca taataggttt attatattca aaaatataaa
     4921 attctttact ttcattttta tagcttaatt ctaattttaa agcattagag ccagttaatt
     4981 ctaagttttt attctcattg cttaaggcaa aatctttaaa atgcaataat aaagaatttt
     5041 tccaattttg aggctcgcca aaagtagaaa tcaacatagt tctacccact tctaaccaag
     5101 cagatttaaa ccataaccaa aaactttcat cttgaggtct attggaacct tctaaagctt
     5161 cttgcgcatg caaagaagca gctttaacta caaaactaat atcattaatt tcataaagtc
     5221 ttctttcctt agcatttgcc ttttctccaa ttttaaggtc taaattttgt ccatctagca
     5281 tacttagaaa atgtaagttt tcacttgaac ttaaagttaa attttcatca atttttacaa
     5341 aaggtgcttt aacattatcg ttcataaaag caaagttaac cccttctata ttcttaactt
     5401 cacctttttc aaatttaaca tcaacacctt gagatccttt ttgagaaagc atcaaaacca
     5461 ataaaggatc agaattatta ttttctttat aagtataatg agcatttaag attaaatctt
     5521 tatattttaa tacagcttga tcatcaccta aattaagttt tagtttaaaa gaattagcaa
     5581 aaggcaaatt tcctatataa cgatcattaa ccgcactata gcgttctcca tcttttatag
     5641 cagaaatacg caaagaagtc ttagaacttt ctataagtga attttgagta tgctctctaa
     5701 taggtaaaat accttcaaaa ccagcatatc ttgtcattgc agaacccact aaaataaata
     5761 aaaaagaaat atgaaaaatc attaaaggta attttttaag cccaaacatt ttataacgaa
     5821 acatcccgca tagtaaatta ataccaagta aaagttgtat atattcaaac caaaaagtat
     5881 cataaaccat tgcccaagcc gtaggagttc cataagcact ttcaataaaa gttgccaaag
     5941 cacaaaaaag cgcaaaaagc aaaaacaata caaccgaaac tcttaaatcc cctatgcttt
     6001 ttattatatt tttcattctt tttcctttaa attttaaagc cctaaatatt tctttctaat
     6061 ctcatcatca cctattaaat ttttagcctc gttttccatt acaatgcgac cattttccaa
     6121 aacataagca taatcactta tttttaatgc agaataagca ttttgctcta ccaaaagaat
     6181 agttataccc tcttctttta aacgcacaat aatatcaaaa acttcaccca caatctttgg
     6241 agcaagtccc aaagaaggct catccaacat caaaagtttt ggttcactca ttaaagccct
     6301 tgaaatcgca agcatttgcg cttctcctcc actcaatgtt ccagctaaag catgcttttt
     6361 acttgcaagt cttggaaaaa gtttatacat ttgctctctt aaatgctcat aattttcagc
     6421 attattaaaa gcacctattt ttaaattttc ctctacgctt aaattaataa aaacacgcct
     6481 tccttcagga actaaagcta tacctttttg aactaaagta tgagttaaat gccttttagt
     6541 atcataacct aagaaattaa cctcaccagt tcttttaact gagtttaaaa gcgcatttaa
     6601 agttgaagtt ttacctgctc catttgaacc tataagagaa acaatatgac ctgtttccac
     6661 tttaaaatca atccctttaa cagcttcaat taatccataa taaacatgca aatctttaac
     6721 tattagcatc aaaatcccct aaatacgcag caattacttc tttatgattt acagcatcgc
     6781 aaagtttacc ttcaaaaatt gtttttccat aatcaagtac caatacgcga tcacacaatt
     6841 tatttacaaa tttcatatca tgctctataa gcaaaacgct aattttataa tcttttcgta
     6901 atttaaaaat gagctcagca agttcatcac tctcagagct attcatccca gcggctggct
     6961 catcaagcaa taataatctt ggttgagtag ccattgctct tgcaatctca acttttcttt
     7021 gttgtccata actcaagcta gcagcctttt cataggcaaa ttctgcaata ccaagttctt
     7081 ctaatattgc ataagccttc tctttaaata cttgttctat ttttccaaaa cgccctaaat
     7141 gcaaaaaggc ttcaaaaata ttatatttca tttgtttatt aaaaccaata agaacatttt
     7201 caagcacatt catgcttgaa aaaagcctaa tattttgaaa tgttctagct attcctaaat
     7261 gcacaatctt atgaggtttt aagtgatcaa ttctttctcc tagaaattca accgaacctg
     7321 aactaggttt atagttacct gttataatat taaaaagagt tgttttgcca gccccattag
     7381 gtccaattaa agcaaaaatt tcaccctcat tgattttaaa agaagtttca ttaatagcct
     7441 taacactacc aaaacttttt gaaatttgtt ttaattccaa aatcattttt tactcctttt
     7501 aaaacgcttt ttaatccctc taatcacatc actcaactca taataaccca ttatgccttt
     7561 tcttgcaaaa agcattacta aaatcagaac aatagaaaaa acaaccattc taagccctgg
     7621 cgttgattgg atataaagat ttaaagaatc tatttttata tttaactcat ctaaaaatct
     7681 aagccactca cttccaccaa taaccaatat cgcacctata atagcacctg tagtagaacc
     7741 aagtccaccc aaaacaataa taatcaaaag ttgaaaagta agtaaaaaat caaattgagt
     7801 tggagatacg gtagtcaaca gacaagccaa aagtccgcca cctacacctt ctaaaaatgc
     7861 tgaagtgcta aaagctaaag tttttatcca aaaagtattt attcccatag cgcttgcagc
     7921 atcttcatca tctcttatag ccttcattgc acgaccatat ttagaataaa ctatatttaa
     7981 aattaaaata accgctacaa tagcaatacc acctgtccaa tagatcgtgg aaaattgtgg
     8041 aatatctacc agtcctcttg agccattagt aatagaagga aaattaatag cagctatttt
     8101 aataattact ccaaagccta aagttacaat agccaaataa tcccctctca cgcgaaatac
     8161 agcaaaagcc aaaatcaggg caagtaaaga tgaacaaatt ccagccacaa ttaaagctag
     8221 aataaaggaa tttgaatgga tggctaaaat aaaagaacta ggaccatcta aaaaaaactg
     8281 atcatttttc gcatcagcac tcaaaagaac taaagcagcc gcataagctc caatcgcaac
     8341 aaatccattg ggttctagtg aaaattgtcc agttacacca ttaataaggt tgtaactcac
     8401 agccaaaata ataaaaatag caatttgatt aacaatgttt aatccatagt ccccaaaaat
     8461 ataaggagaa atgaaaataa aaataattga agcaattaaa aagattaaat gtgaaacctt
     8521 aattctaacc atcattaaaa cctactcttt tcaaaattta tacctaaaat tcccgtaggc
     8581 ctaaataaca atataaacac caaaaaaata aaagcaaatg catctttaaa gcctgataaa
     8641 tctggaaaaa aagccacaac aacaacttca gtaaatccta taataagtcc acccaaaact
     8701 gcacctacta cagaacctat acctcctaaa actgcagcag caaaagcttt taaacctatt
     8761 aaagttccca tagtaggttc aacagagtaa taatttgcag cccaaaaaac acccccaact
     8821 gctgccaaag ctgaacctag ggcaaaaact atagcaataa tacgatttgc atctataccc
     8881 attaaattta ctgtttgtat atcaaatgcc aaagcacgaa tagctatacc atatttgctt
     8941 ttatacaaaa tccataacac tgctattaaa ataacaaatg taagagcagg aaccattaaa
     9001 gaaccataag ttgttatcac tccaccaaaa ttaacacttt cctcaaaata acttggcggt
     9061 gtaaaagttc taggtgttga agtaaaaagc atattaaaaa gattttgcaa gaaaaaacta
     9121 ataccgattg ctgtaatcaa caatgaaatt ctaggagcct gtcttaaagg tttataagcg
     9181 attctatctg tagctattcc aacacaagca gcaaaaatca ttgctaaaga caaagctcct
     9241 agaaaaggaa catttagatt agtcatgcaa aaaagagccg cataagcacc aaccatcata
     9301 atatcgccgt gagcaaaatt aataagtctt aacacgccat aaaccatagt atagccaaca
     9361 gcaataaggg catacatact gcctaaacta agtccattaa caagttgttg taaaaataaa
     9421 gtagaatcca taatctttct atttttcctt taaggattga taatatcttt ataattttgc
     9481 ttctgatttt taatttcttt aaccactaca gaacgagttg catttcctgt ttgatcaata
     9541 ctgataacac cagaaacgcc ttgataattt ttagtttggt gaattttttc attgacacac
     9601 ttactagtaa gattttcaac gcaagcattc atagcattta gcattacaaa atacgcatca
     9661 gcacccatag ctgaaaaatt tggaacttct tttgttccct tagctttttc ataaacactg
     9721 ataaattctt tgcttaattt tgtagttgga ttattagcat caaaactatc tgtgaaaata
     9781 taaccctcgc ttgcatctcc agctaaacta ataaaagttt gatcagcaac tccatctgca
     9841 gaacccatag gaatatttaa acctgcgagt tttgattgtc ttgcaaataa agaagcttca
     9901 ctataataaa gcggtaaaaa aataaattct ggatttaaac ttttaacttg agctacaata
     9961 gctctaaaat ctttatcacc tgaattaact cttaaaattc taagaatttg accaccatta
    10021 gacttgtact gtttttcaaa agcttttgct aaacctaagg aatagtcagt gctttgatct
    10081 actacaataa cagcactttt gtaattaagt tttgaaaaaa catattttgc taaagatgaa
    10141 ccttgaaaac tatccataaa acatactcga gaagaatata tttttttatc aagcaatcta
    10201 tcaccagttg cagcaggagc gatcaatgga attttattat cttctgctac gcgcataact
    10261 tgcaatgtat tagcagtaac catttcccct ataaggccta taactttatc ttgagaaact
    10321 aaacgatttg ctccactcga agattctaat ttatcacctt tagtatcaat aatagcaaga
    10381 gaaaccttat ctccattact taaagctgat tgcattgaat ttgcaagttt aatcccttct
    10441 agtgcgcttt gtccatatgc tgcagtagct ccgctaagcg gtaaaacaac tcctattttg
    10501 acttccgcag cacttaaact taaacttaga atacttgcta aaattaaact ttttttcatt
    10561 ctctaccttt attttagtaa ttatggattt ataattgttt tataattttg tttttgattt
    10621 tgaatttctt taatcacaac agaacgaatg gcattaccgc tttcatctat gctaatcaca
    10681 ccaccaacag cttgaaaatc tttagtttga tgaattttgc tattaataca ttcgctgcta
    10741 agattaccaa cgcaagcatt catagcattt aacattacaa aatacgcatc agcccccata
    10801 gccgaaaatg ctggaagttc ttttgttcct ttaactttct cataagctgc aacaaaatct
    10861 tttcctaatt gtgtagatgg attgttataa tcaaaactat cagtgaaaat tactccatta
    10921 acagcacttc cgccaagatc tataaaagtt tgattgttaa caccatctcc tgctgctaaa
    10981 agtttatcaa aaccaatttg tcttgcttgt ctcgcaatta aagcagcttc aggatgataa
    11041 ataggcatat aaacaaaatc aggatttaaa ctcttaagtt gagaaaccac agctctaaaa
    11101 tctttatctc ctgaattaat aacaagtttt tttataattt tcccaccatt attcttaaaa
    11161 gaattttcaa aagctcttgc caaacctaaa gaataaacat tgctttgatc tatgatgata
    11221 acagcatttt taagtcctaa atccttagat acataagtag caaatttatc tccttgaaaa
    11281 ctatctttaa aacaaactct acttgcatat ttctttttat ctagcaattt atctccagat
    11341 gccactggag ctattagggg aatttttttc tcttctgcta tagaaatagc ttgaatggta
    11401 tttggagttg tagcttcacc aataatccca aggactttat ctgttgctat taaacgatta
    11461 actccatttg aagtttcaag cttatctcct tttgtatcta ttgtgataag tttaataaca
    11521 tctccatttg aaagttttgg ctgtagctta ttagccagtt caattccgtt aaaaacatct
    11581 tgcccataag ctgccacagt tccagttaaa ggtaaaacta ctcctatatt aatatcctta
    11641 gcatataagc aatttaccat agttaaaaca cttaaagtta aagttagttt tttcatagta
    11701 ttccttttaa ttatagtttt tacattttat tttagaaata tattatgttt tgttttttgc
    11761 gcaggttctt cttcaagaag atcttttact tgcaaatcaa gcgcaaaatt tccaccttta
    11821 atataagcaa taatattatc tatatcctcg tggcttaaat ttctagcata aaaagccatt
    11881 tgagaagctg ttgtagaact gctactatca agagtataac ctatcaaagc tcctttaata
    11941 tcctcaggag acatatcttt taaaattcta gatcctataa cactcttttc agcattatct
    12001 ccatggcaag tattgcattt attttgaaaa tacaaagcct tcgctttttc catatcatat
    12061 tgcttatttg catcaaaggt ataagtaaaa aatgatttca agttaatacc aaaaagcgca
    12121 acaacaaata ttgaactaat aaacaaccag cgtgcaatca tgattttcct tattttattg
    12181 taatttctgt ttgtgtttta ttttgatatc tatgtgtttt tttgttgtat tttttttctt
    12241 ttttaatatc atagcgataa cgaacagtcc ctgaaacttc tatatcttta aagacttcat
    12301 ctaacggagc tgcaaaaaca aaatgattta aaatcatacc aattaaaaat atttttttca
    12361 tttttattct ttaaacacaa aaaaacgatt atatcaaaaa aagataatcc ttgttaatga
    12421 ccacctttgt gtaaaaaata aagtcctaca caaagagcta aaatcgatcc agcaagaaaa
    12481 gccatatcca caggagtagc aaatttcatc tgtaaaaccc tttgaaagaa atttaccact
    12541 aagaccataa tgataacttt tgcaagcttg tcttttaatt gatctaagct atgcacctct
    12601 aaaaccttgc tttgttttgt ttgtttaaat tcttctattt cgctgataaa aagctcataa
    12661 actccaaaag aaaaaataaa caaaactaaa gccataagat aaagatcaac agctcctata
    12721 attaaagcca ccacatcctc atgcaaatcc acattagaac ctgcatcaaa aaaataatta
    12781 taagtataaa atataacttt taaaacatca taacttgcaa taaaaaacaa tacaaaagct
    12841 ccaattaaac caaaaattac gggtaaaatt gtaacaatac gacttctaac aagtaaagat
    12901 tcaaatattt tctctaacat ttttttcctt atttattttt taattctaac catttttgcg
    12961 caatacgcac agcatttgtt gcagcaccta cacgaatttg atccgccaca caccaaagat
    13021 ggagtatttt tttatcatac acatcagcac gaattcttcc tacataagtt tcattagtat
    13081 cgctagtcat taagggcata gggtattttt tatttttagg atcatctatg acaataacac
    13141 ttggtgcttt ttctaaaatt tctttagctt tttttacatc tatttctttt tcaaaatgca
    13201 tagtaatggc ttcgctatga cttcttaaaa caggcactct tacacaagtt gccgaaactt
    13261 ctaaattttt atgtaaaatt ttttgagttt cattgaccat tttaagttct tctttagtgt
    13321 aatcattatc cataaaaaca tcaatttgtg gaataagatt aagtgccaaa gtataaggaa
    13381 aagtttgagg ttcaaattca tcaagtttaa aagcaaaaaa actttgcatg gcttcaacca
    13441 attcttgcat tccttctttt cctgctccac ttgcagcctg ataggtactt acatcaacac
    13501 gctttaaatt aaatgcatca tttaaaggtt ttaaaacttg caccatttgt atagtagaac
    13561 aatttggatt agcaataatc cctgtttttt tccaatcttt aatatcctca ggattgcatc
    13621 caggaaccac caaaggaaca tctttttcca ttctaaaatg acttgtatta tcaattacaa
    13681 tagcacctga ttctactgca aatttagcat atttttcact cacacttcca cctgcgctaa
    13741 aaaaagcaat atcaatagga ttttctttaa atacattttc ggtaagttct ttgactttat
    13801 aagctttgcc tttaaattct acttcactac ctacactttt tgcacttgct aaaggtaaaa
    13861 tactttccac tgggaaatca agttcatcta aaacatttaa aagctcttcc ccaaccgcac
    13921 cagtagcacc cacaatggct attttttgtt tttttgacat tacttatcct ttatttgata
    13981 ttttttaatt ttttcattta aaatttttat atccatacct aaaatttgag aagcttgatc
    14041 cttgtcataa tctacactta aaagaacttc acaaatcaat tctttttcta aattctttac
    14101 atcttttttt atacttctag cttctaagaa caaatcttca cttgaaattt catcattttc
    14161 acttaaaata caagctcttt gtacaacgga tattaattct ctaatattac caggaaaatc
    14221 atattcaagt aaagcatttt tagcttcttg actgagctgt ttttccttaa aatcatattc
    14281 tttacaagta tcttctaaaa ccttttgagc tatacctaaa atttcttctt tacgctctct
    14341 taaaggcggg atattaatag gaacagtgtt taaacgataa tataaatctg aacgaaattc
    14401 gccatttttt attttttcat ccaaatttgc attagttgca ctgataattc ttacatctat
    14461 tttgatgctt tttgtacttc caagtcgcgt aatttctttt tcttgcaaag ctcttaaaag
    14521 tttggcttga atttcataag gcatttcgcc aatttcatct aaaaataaag tgccctcatt
    14581 agccatttca aaaagcccta ttttagttgc attagcatca gtaaaagcac ctttttcaaa
    14641 accaaaaagc tcactttcaa tcaaatttgc aggaatggct gccatattaa tagcaacaaa
    14701 aggcttatta gagcgtttag aatgagtgtg aatataacga gaaaatacct cttttcctac
    14761 tccactctct ccaaaaaaca ttacagaggc atcagtttta gccgcttttt gacttaaatt
    14821 taatgttttt tctaaattag gagaagttga aaaaaaatct ttattttctt cttttttttc
    14881 attttttttg ctttttttat cggctgtttt ttctcttatg attttagcac gcttaatagc
    14941 ctcgactaaa gtatcaacat caaaaggctt ggttaaaaaa tcttttactc ccaaacgaac
    15001 cgcttctata gcacggctta aagtagcatt tcctgtcata ataataaaat catatttatt
    15061 ttcacaagct ttaacaaatt ctatgccatc aattcctggc atattaatat ctgtaataat
    15121 caaatctgta ttctcatcta ttttttttaa agcttcagta gcagatttat aagatttaat
    15181 attaaattct tcatactctg ctaatgcaat ttctaaggat ttgcgcatat taatatcatc
    15241 ttctactatg actaaattca tcctaagcct tttaaaaaat ttctactata gtatccaatt
    15301 tgcgcttaat tttgaattta ctttttttta agataataaa ttatcgcatt ttgttcccca
    15361 aattccacgg taaaacgcaa gggtaaaatt ttaacataag tttcactttg agcacgtaat
    15421 aagtcagtat taacaatatc cttaacactg attctagccc ctataaagca atcgcttaac
    15481 tcatctttat gagaatttaa aaaattaaat ttaattgttt ttggcatatt atcatcaatc
    15541 aatcctaaag aagttcgagg taaaactttt aaatcttgat cactataaga aatttcacat
    15601 acccattgtt cttcaacatt ttcgctttgc gtcattgcta aggataaatt ttgattttga
    15661 tgaaagagaa tgaaattttt actagaaagc tctgcccaaa aaataaattc atcttgggca
    15721 aaaagcttaa agctaagaaa gattaataag caaacaattc tttccacttg tctgcatcga
    15781 ttttaagttc taagtttacc ctataaagcc cttgattaaa attctgatca ataatacttg
    15841 cattttttat caaaccattt acttgcgcag taatagttga acttctaagc attgcatctt
    15901 ttacggtgtc tttaccattc actttcacac cataaagctt acttgcaagc tgtctgtaag
    15961 catctgtaat cgctgctctt tttgctaaag ctagggcttg agcagtagaa actgtattca
    16021 tcggagcaat cccttcacca actgctgtaa aactaagttc cgtttcgcta gcatctggag
    16081 ccaacatttt ttcttctctg ataatatcac gcacatcatc tttatcgact ttttgcacga
    16141 taacatcttg agatggggca gtgctatttg cacttgaatt tttagttgca ctgtttgcac
    16201 ttgatacaca accagcgaaa attcctgcta ttgctagcat aaaataaatt tttttcattt
    16261 ttacaccttc aaaatattgt aattagtaaa aaataaaaag caataagcgt tccaacttta
    16321 aacttattac aaatctaaac caaagttttc atcgcttaac tcatcctcat cattttcctc
    16381 tttaggacac ttagcgatgc taaccacctc gtcattttcc acattaacta caatgacacc
    16441 actcgtatta cgccctgctt ttctaatgct ttgcatatca acacgtatca tcttgcctga
    16501 acttgtaaga gccatcaaat ccatagtttc atctactata actacgctaa taagatcttt
    16561 ggttttttct gtaagtttca tacaaattac acccttacca cctctgcttt gcaatctata
    16621 ttctccagca tttgtgcgtt ttcctatacc ttttgcactt atgcttaaaa tttcttgctc
    16681 atcattttct ataacaactg cacctactaa ttcgtcattt ttctctttaa acttaatagc
    16741 cgtcacccca cgacttacac ggccgatttc acgcacttta gcaagtggga atttgataca
    16801 catacctttt ttggttactg caaagagcat tttaccttgt gtgcttacac tttcttcatt
    16861 ttcaagattt tcatcatcta aattttcaat ttcttgattt tctaaatttt cttcaccacc
    16921 agtggcaaaa atttcatctt catctctttg aacaataata gcagttacca actcatcatt
    16981 ttcatccaag ttgatcgctc taactcctac acttctgata ttttgatatt cactcaaatt
    17041 tgtacgcttt acaataccat ttttagtaaa gaaacataaa gatttactct catcaaaatc
    17101 cgtggttgga ataatagcca tgattttttc ttcagcttgt aaattaataa gatttaccac
    17161 tgcttttcct ttagccgttc ttgagccttc aggaatttta taaactttaa gccaataaag
    17221 ctgtccacga tctgttacaa acataagtgt atcatgtgta tttgccgtaa agaaactttc
    17281 tataaaatca tcatcataag tcgtaacggc taattttcct tttccgcctc gtttttgctt
    17341 ttcatattgt ttactaggca cacgcttaat ataaccacga tgcgtaatag ttacaaccat
    17401 attttcatta ggaatcaaat cttcaatatc aatatcatca taatcatctt caatttgagt
    17461 aatacgtggc acatcaaatt tacttctaat ttcttttaat tcatcgcgaa ttaaattttc
    17521 aagcaaggtt tcacttttta aaatttcttc aagtcttgca atttctttca ttaattctgc
    17581 aagttcattt tcgatttttt ctctttcaag tcctgttaaa cgaccaagtt tcatatctaa
    17641 aatagcattg gcttgaagct cactaagacc aaatttagct accaaagaat ctcttgcggt
    17701 attattatca gaactatttt taattaaagc aatcacttca tctatattat caagtgcaat
    17761 tttaagacct tctaaaatat gagctcttgc tcttgccttt tgaagttcaa aaatcgttct
    17821 tctaataata actgtttttc tatgggttaa gaaaagattt aaaagttcta acaaagagaa
    17881 aattttaggt tctttattgt gaattgccaa cataatcaca ccaaaagtac tttccatagt
    17941 agtagattta aatagattat ttaaaacaat ttcactcata gcctcacgtt taagctctat
    18001 aacaacgcgg attccttctt tattgctctc atctcttact tcagatattc cttcaatttg
    18061 cttttcttta acaagctctg caatctgctc tataagccta gctttattgg tttgataagg
    18121 aagctcatct ataacaataa catctttatt tgtctttttt tcaatatgag ttttagcgcg
    18181 cactttcacg cgaccacgcc ctgtgcgata agcttctata ataccttttt taccataaat
    18241 tattccacct gttggaaaat ctggaccttt gataaactgc ataatctctt ctaagcttgc
    18301 atctttacta tcaagcaaat ataaaagtcc atctatcaac tcatttaaac tatgaggtgg
    18361 gatgtttgtc gccataccta cagctatacc acttgaacca tttaataata aatttggaac
    18421 cctagaaggt aagacatcag gttcactttc tgaaccatca taatttggaa caaaatcgac
    18481 cgtatcttta tctatatctt ttaaaagctc atgagaaagt ttactcattt ttgcttcagt
    18541 ataacgcatc gcagcagcgc tatcaccatc tatagatcca aagttgcctt gtcctgtaat
    18601 acttggatat ctcatagaaa aatcttgagc cattctaacc aaagcatcat aaactgctgt
    18661 atctccatgt ggatgataac gacctataac agcacccact atacgggctg atttgacaaa
    18721 atctgttcta ctttttgcct catcattttg catagcatat aaaattcttc tatgaacagg
    18781 ctttaaacca tctcttgcgt caggcaaagc acgacctata ataacactca tagaatagtc
    18841 taagtaacta ccttttatag aattttctat atctacaagt tcaatatcag aatctttgct
    18901 aaaaatattc tccataaaaa tccttctatt agttcaaagt tttgattata gcatattaaa
    18961 cttttgcatc agctaaaaca agagcaaaaa gtacagaaat tttattttct tctaaaactt
    19021 ttttagcttc caaaaggcta gaaccagtcg ttacaatatc atctactaaa attacaggtt
    19081 cgtgaatggt ttttaagagt ttgtaatttc ttttatgttt ttgacgaaat tctaaacttt
    19141 ttccagaata tttaatatga ttttgtgctt ttaaaacatt aaaaacaggt tttacaaatt
    19201 ttgttttaag atatctagct aaaatagcag aatgcgaata aagcatatct tcaaccttat
    19261 catctaaagc tataacatta attgtcattc taggatcaaa aaaatcttta aattttgcaa
    19321 aacttaattt agcaagcatt ttataaacaa aataaccata aaaataatgt ttagagtgaa
    19381 gcaagtgttg tatttcatgg tatttataaa aagaatagac tttgaaatta ttatcaagct
    19441 ttcttacatt taaggaaaat tcagaaagct ctagctcgca taattcacaa aagcagagca
    19501 gagcaaaagc tccgcaattt atacacctca aagttcagag attaaactag ctgctttatt
    19561 tgccatttgt tttattaaca aatgagtata aaaagttgtt tcttttaaat catcaaaacc
    19621 ttgtacatct tgcttggtac ggattgtaaa tttcttattt ttatttatat cactaacttg
    19681 taaaactcct actagttttg aatgtaatcc tatagcatct tgagttgctc cataagatat
    19741 aaattctaaa tcaatcttac tcacataagg tgaattttga tcgttattgt caagcacaac
    19801 tattcctcta gcttcaagtt cttgttttaa ataagtataa aataccgcat taaaatttac
    19861 atcaacaaat aactttttcc ctttagcatt taaaaccttt tgctcttctt ttaaatcata
    19921 aaatctatgt aaataaacct ttttcaaagc aataccagtg tctaaagtgc gtttattggc
    19981 acaacattga attccaacat cgctaatgta taaaagccct ttaatctttg cttcaaaacc
    20041 accaggactt tcacaagaac tgcattgaga atttttagaa atttgattaa cttgagcaaa
    20101 agtatcttgt ttagttgcac aagcactcaa aaataaaata ggcactataa aaatcaaaaa
    20161 ttttttaaac attttttctc cttagaaaat tattttaaaa ttgtattaaa aatacaagca
    20221 aatttcaagc caagttttaa atttatcatc aatctatctt taaaacactc aaaaaagcct
    20281 cttgaggtaa atttacctta cctatagctt tcattctttt tttaccttct ttttgctttt
    20341 ctaaaagctt tctttttcta gtaatatccc caccataaca ttttgctgtc acatttttac
    20401 ccatggattt aacagtttct cttgcgatga ttttatttcc aatacttgct tgaatggcca
    20461 cttcaaaaag ctgtctagga actatttctt tcatagcact aacaagttct cttcctttac
    20521 tttgcgcttt ttcattaggc acgataatgc ttagcgcatc aacattttca cccgctacct
    20581 taatatcaag ttttaccaaa tcccctactc taaattctat aggctcataa tcaaaactcg
    20641 cataaccttt tgttaaggac tttaatttat cataaaaatc catcacaatc tcatttaaag
    20701 gcacatcata ttctagcaaa acacgctcag gtgtgatata gtccatttta acctgtactc
    20761 ctcttttgcg atttaaaaga gtgattaaat tccctaaaaa ttcacttgga gtaatgatag
    20821 tagctttaac ataaggctct tttatatgat cgattttatt aacaggagga agctcgctag
    20881 gattttgaat tttaataaac tctccatcgg tttgataaat ttcataagtc acagttggag
    20941 ctgtagcaat caaatcaaga ttaaattctc tctcaagcct ttctttgata acttccatat
    21001 gtaaaagccc taaaaatcct accctaaaac caaagcctaa ggccaaagaa gtttcaggct
    21061 cataagtaat agaactatca ttaagcttta atttatccaa agcatctctt aaatcttcaa
    21121 atttatccgt ttctatagga taaagtcccg caaatacaaa agctttagcc ttttcaaaac
    21181 cacctatggc ttctttagct ttgtttttta ccaaagtgat ggtatcgcct acttgtacat
    21241 cacctacggt tttaagccct aaaaccacca cacctacttc gcctgattgt aaagattgag
    21301 ttttaattgg acttaaaggg tggggataaa aaagatcttg aactatatgt tttttatccg
    21361 tactcatgac taaaacttca tcgtttttag caatacttcc ttcataaatc ctaaccaaag
    21421 ccaaagcacc caaataatta tcaaaccaag aatcataaat taaagcctta gtaggagctt
    21481 catcatctgt ttttggtgca gggattttag taataattgt ttctataagc tcttttatac
    21541 ccactcctgt ttttgcactc acacaaattg catctttgca atctatacct ataatatgct
    21601 cgatttcatg ctttactttc ttaacatcag cattaggtaa atcgatttta ttaatcacag
    21661 gaatgatttc aagattattt tcaagcgcta tataaacatt agctatagtc tgtgcttcaa
    21721 caccttgaga agcatctact acaagcaaag ctccttcaca acttgccaaa gaacgactca
    21781 cttcataaga aaaatccaca tggccaggag tatcaataag atttaaaaca aaattttcat
    21841 tattaaattt ataatttaaa cgcactgatt gtgcttttat ggtgatacca cgctcttttt
    21901 ctatatccat agtatccata acttgtgaac tcatctgcct atcgctaata gcaccacact
    21961 cactaataat cctatctgca agagtagatt ttccatgatc tatatgagct ataatagaaa
    22021 aatttctaat attttttacc gacaaaattt catcctaaat ataaaatttt aaagctagga
    22081 ttttaacaaa atttatgttt aaaacaaata aattttattt tatataaaaa acttcaattg
    22141 aaatttatat aaaacatatt aaaatatcaa aatgtttgaa aaatatttaa aatcagctat
    22201 atttttagct ctttatccct tagcaatgtt agcttctaat ttgcacgaat ttatagcact
    22261 aagtcaaaat aatgaatcct atctcattaa gcaaatgcaa agcgaacaag caaatttaga
    22321 caaagaacaa gcttttagaa attacctacc ctctcttagt ctaaactcag cttatgtagc
    22381 caacaataaa gatcgcttca ttatcgatcc acaagaaagt ttatttgcta aagtttctct
    22441 taattttttg ctttttgatg ggggtgctag agaggctaat ttaagagctt tagaaagcag
    22501 agaaaaatta agccttttag acaaagaaca aaataaaaat taccttgccc taaatgcaat
    22561 cacactttat tttaacacct taagtcttga aaaaatttta ctagccaatc aacaaaaagt
    22621 atctttttta aaatcaactt ttgaaagatt gcaaaaattt tacgacgcag gacttagccc
    22681 taaagatgaa cttgaaagca ttaaggctaa ataccattta agcttattag agctcagtca
    22741 aaatgaatta aaacttgcca atatacaaaa agagattaaa attttaagca atacagattt
    22801 taaagtgcaa gggaatgctt ttttagaaaa tccgcaacaa gaaaaaagtc aaaactatga
    22861 agtaatgata gctaaagaac aaatcaatct tgctaaagaa agtgtaaatt tagcaaaagc
    22921 tgaatatttt ccaaaatttt atattcaaga taattttaac ttttataaaa acaattataa
    22981 tccaaaagtt ccagctcctt ttgcaaattt agcggatcaa ttcttagaaa aatattctca
    23041 aggtaatcaa tttattttag gtatggaatg gaaaattttt gatttcaatg caagggctaa
    23101 agaagttgaa aaagagcgtt taaatgttca aatagccaat gcaaatgcaa gatttagcga
    23161 gagaaaaaat aaagaagaat taaattattt agacaaaagt ttaaaagttt tacaagaaca
    23221 aattttagct cttaatctta gcttaaatgc tgcaaattta gcttttgaaa gtgtagataa
    23281 aaaataccaa gcaggacttg tttcttatgt agaatatctt caagctttag aggctaaatt
    23341 taaagcacaa agcgatttag agcttgctaa aaatgaattt gaaattacta aagcaaatta
    23401 ttattttaat gcgggtatag atcttaattc aaaggttaaa gaatgaaaaa aattctattt
    23461 ttacttcttg tttttaattg cgcctttggc gaagaaattt acgcaagttt caatgtagaa
    23521 gcatcaaaac aaagcaaact tgcccttgaa agcataggtt tggttcaaaa aattcctgta
    23581 gaaattggac aaaaagtcag caaaggagaa cttttacttg ctcttgatca agaaagtgaa
    23641 aaaatagctc ttcaaaatgc tcaaaattct tatcaacttg cccttgtaga atacgaaaat
    23701 accaaaagta ggatgcaaaa aatcaaagct gtagaaaatg ttatagacaa acaaagctat
    23761 gaagatatga aagctaagtt tgatgctgct aatttaaatt taaacaaagc aaaaatcaat
    23821 atagcttatt ataaaaatat catggcaaaa aaagaattac gcgcacctta tgatgctatt
    23881 atcgcaaaca aatttataca agtgggcgaa ggagtaggag gagtagctca acctttaata
    23941 gaaatttttt cctatccaca aagcaaactg attttaagtt ttgatgaaaa atataaagat
    24001 aaagttagat taggcgatga tttcttttat aaaatcgatc aaaatggcac agaattgaaa
    24061 ggaaaaatca gccttattta tccaagtata gaagtaaaaa caagaaaaat ttatgctgaa
    24121 gtgcaaacca caaatctaac accagggctt tttggtgaag gtagaatcat cactaaagat
    24181 taaaaatgtt taaactagct ataaaccgac ctattaccgt gctaatgttt ttcttagctc
    24241 ttatgatttt tgggctaatc tctgctttta gcatgagtgt aaatttattt cctaatgttt
    24301 ccatacctct tataaaaatc acaagcaaga taaatgggga tttaaatttc gtagaatcaa
    24361 aagtcactaa agaaatagaa aatgctttaa gtgaaatcga tggagtaaag accataacct
    24421 cagctgcata tgataatttt agtgtaagtg tagtcgagtt taaactgggt aaaaatcttg
    24481 aagtagctgc caatgatgtg cgtgataaaa taggaacttt aagcctacct tctaagcctg
    24541 aaattgaaaa aatcaattca gattctggtt ctgctatttc actttttcta tattctaaag
    24601 ataaattaca actcatgcgt gaaatcaatg acaaaataaa accttttttg caaagagttg
    24661 aaggagtagg taaaatcgaa gctaaggggt ttttagaacc ccaaattcgc atagaattaa
    24721 aaccaaacga acttagaaaa tacaatctta acgcccttga tgtagcaaat atcatcaaaa
    24781 gtcaaaattt taaacaagcc ctaggcgaac ttaacaacaa tcaagataac tatatcatca
    24841 aaggctattt tgaagccaca aatttagaag aacttagcaa tcttcgcata aaaacaggag
    24901 tatttttaag tgatattgct aatatttcaa gcctttatga agatgaaaaa caaagtgctt
    24961 tatacgaagg taaagaaggg gtgcttttag aactcggaaa aatcacaaat tataacaccc
    25021 ttgaaatgat taaaaatgtc aaaaatgcct tgcctatttt agaaaaacaa attccaaaag
    25081 atataagcat taatatgctt tatgataaaa gcttaaatat ccacaagcac ctttctcaag
    25141 tgatttttga tatggttttg gggatttttc taacccttgt tatcgtgttt ttatttttaa
    25201 gaaatttaag tgcaactctc attgcttgca tagctatacc tacttctatc atttcaactt
    25261 tttttattat cgatctttta ggctatgatt taaaccgctt aacttttata gctttaacct
    25321 taagcatagg aatttttatc gatgatgcta tagtagtgat tgaaaatatt gctaaaaaac
    25381 taaaaactta tccgccttta caagctgctt ttttaggtat caatgaaata ggttttagcg
    25441 ttttaagcat aagtatagtt ttactttgtg tttttatccc tatttcttat atgaactcta
    25501 tatcagggct ttttttcaat gccttaggca taagcgttgc aagtgggata gttataagct
    25561 ttttggtttc tgtattttta atacctagta ttggggcaag atttttaaat ccaaaagaaa
    25621 acaagtttta tgaaaaaaca gaagcttttt ttgaaaaaat agagcaaaag tatgaaaatt
    25681 tactctataa aattttacaa aataaagtaa aatttatcct agccactctt gtttttatag
    25741 ggctttcttt tgctttagcc actcgcatag ggcttgattt tttacctatg gaagatgata
    25801 gcgaaattca agttttgctt gaaagcaaaa aggatttaag tttagaagcc atgaaagaaa
    25861 aaagtttaaa tttgcttgaa aaaatcaaaa atgatagcaa tgtcaaatac gcttttttac
    25921 ttgtaggcta tgatgatgcc aaagatgcta caaaggctaa aatttatgtt aaacttaaaa
    25981 atttagacga aagaaattta agacaaagtg ccatagtaag tttatatcgt caaaaatttc
    26041 aagatgaaag tttaaaaatc aaaattttag aacttccaaa gatagagggt gcaggcattg
    26101 atgatcccgt gcaattttta atcttaggag atgatttaaa cactctaaaa gaagctgctt
    26161 ctcaggcaaa agaaatttta ggcactaatg cgcgcattgt agatataagc gataatgcta
    26221 atgctacaaa agatgaagta gccttacaca tcaacaaaga aaaagccaaa cttttagatg
    26281 tcaatcctca atatatcgct ggggttttag ggtattcttt ctcgcaactt agcgtaggaa
    26341 gcatggatag aggcaattca aaagatgata ttatcctaag ttttgctcca gaatttaaaa
    26401 aaaacataga agctttaaag cgcattagca ttaaaaacaa ccaaggtata aatttagaac
    26461 tttcaagcgt ggtggatttt atatacagta aagatttaaa aactatcaat cgttacaata
    26521 aaaaccgctc tgtgaaaatc acagctggag tgaatgatct ttccttagga gcggtgcaaa
    26581 aacttttact agataatatg gataaaattt taaataacaa tccaagtctt agctatgctt
    26641 tttcaggctt tatcaatctt ttaggtgaaa ccgtgcaagg ttttgctatg gcagtagcac
    26701 ttgcttttgt tttaatttat cttgttttag ccgcacttta tgaaagtttt attctgcctt
    26761 taatcatcat gataaccatg cctttagcct ttggcggagc ttctataggg ctttttatca
    26821 cagggcataa tttttcactt tttgtactta ttgccatcat cttacttttt ggtatggtgg
    26881 ggaaaaatgc tattttactc gtagatgtag ctaataaaaa atgccatgaa ggtttagatc
    26941 ccgataaagc tcttttaatc gctggaaaat cacgcttaag ggctatattg atgacaactt
    27001 ttgctatgat ttttgctatg ctcccacttg ctctttcaag gggtgcgggc tatgaagcta
    27061 attctcctat ggcaatagcc attatctttg gacttataag ttcgactttg cttaccttac
    27121 tcgtagtacc tgcacttttt aaattttgtt ttaaactaga tagcaaatta agaaaaattt
    27181 atgagagaga aaaattaaat taaccaaaat gattaattta atttttttaa gtattattct
    27241 tataaagtgc ttttaagtta tcataggcga tttgtatttt ttcaaactgt tctcttgcgt
    27301 aagctttttc tattgcactt tttccttgat gaaaatcagg atgataaagt tttaccaaaa
    27361 tcaaatattt ttgtctgatt tcactaagat cattttgcgg agtgcattct aaagtattaa
    27421 aataattact aaaaagctta gctaaagcat taaatttcca tttcatattt tctttattgt
    27481 gaatattttg gcgaaatttt ttatactctt cgcggtcaac ttcaaaattc acgcaatatt
    27541 ttaaatgctc gctctcatct gcaaaagctt caaaaagttc aagggtattc tcgtttttat
    27601 attctaaaat tagaatattt gtcatttcat tatattctat attatgatct tgaaaataat
    27661 ttcttatata agtaataaat aatttttcat tagagcttaa cttcatcaaa attctacccg
    27721 caacaaaatc aatcttgata aacaacatag gcttaagcat attattttgc tcaaaaatta
    27781 atctaaaagt tttaaaatga gcatcttgta aattctctat accttcattt gtgcttttac
    27841 gatatttttg atctaaaact tttaagaaat aacggcgctg tggaatttca ttttcttcaa
    27901 aaaaagaaaa aattttattt tttcgtccta tgacctttgt gaaatttttg gtaatcaagt
    27961 ctttaaaata ctgaaatacg ctaatatcat ctgtattaac attgatagtt tctaaagttt
    28021 gcacaatttg catctatttc tcccataaaa cctcattttc aaaaagctct ttagtgcctt
    28081 ttaaaatttc attgggtgta taatcggctt tataagataa agattgacac ttttttacaa
    28141 aatacccaag ataaatataa tctaagttca tttttttagc tatttgtatt tcattgagca
    28201 aagaaaattt acccaaagaa aaatacgaaa aatcaggatc ataaaaacaa taaatgcttg
    28261 aaattccatc ctctaaaata tcaatcaaat caacacaaac gagcttatct tctatataaa
    28321 atgcaagctc atatccaaaa ttcataaaac catcgacata aagattataa tactgtttaa
    28381 agcttaaatc ataacgcttc cagttctttt tttcttccat aaaacgatgg tatttatcat
    28441 ataaaaacaa atgttcattg cttaaattgg gcgttctaag tataactttg gtgttaatat
    28501 ttttatttac aacccttctt tcacttcttg aaaaattata ttcattaact aaaattctaa
    28561 gacttaaaca ttcatcacaa tctttacaaa tagggcgtga aaaataccta ccaaaacgac
    28621 gccaacctcg ttttattagc tcattattga tttctttagg gcaattttca atgtatttat
    28681 actctattct tgaacgttta tcctttaagt aaggacactg atcttcaaga gtacaaaaac
    28741 caatctcaag cattaaattt tcttaatatc tgtatttttg ataaattcgg aaaattcatc
    28801 ctgtagtttt tcttgcttta agaaaatttc ttgcatttcc ttatctatgt ttgtttcttg
    28861 atttttttcg cgaatatctt tagctagttt ttctaaattt tttacacttg caccactctt
    28921 gcttgatttc ttcgctaatt ttgaagtatt ggtgttagct tgcatttctt ttttaatact
    28981 tttaagactg tctaaaaaat ccatctatta ttccctactt tctcgtattt ttttaagcgt
    29041 agcagctatt gcagctataa cttcttcttt attttcttga tgacgatctt ctgttttttc
    29101 taataattct tgcatatgtg tttctatgaa agaggtgtct aaataccccc ttctaaattc
    29161 tcttgttttt gtaatggcaa ttaaaaatgg tattgttgtt ctaatatcat caatcacaaa
    29221 ttccttcaaa gcacgttcaa gtttattaac cgctaaatca taacttgttg ctttaataat
    29281 aagctttgca agcatggaat cataataagg cggcacagta tagtctttat aaatatgact
    29341 atcaacccta acagatggtc caagagctgg gtagtattct cctatttttc caggacttgg
    29401 aataaaattt ttccatacat tttcagcagt aattctagct tcaatagcaa aacccctagg
    29461 tttaatatcg ctttgttcta agtccaaaat ttctcctgct gcaatacgaa tttgtcttac
    29521 aataagatca atacctgtaa tttcttcagt aattggatgc tcaacttgaa ttcttgtatt
    29581 catttccata aaataaaagc gattataatc atcaagcaaa aactctatag ttccagcatt
    29641 tgtataacct acagccttag cagctgccac agctgtaaca cccatggttt ttctaagatt
    29701 atctgaaatt ccagggcaag gtgctatctc aattaccttt tgatgtcttc tttgaataga
    29761 acaatccctt tcacaaagat ggataatatt tccgtagtta tctcctaaaa tttgaaattc
    29821 tatatgtctg ggattaacta catatttttc cataaatact tcatcattat taaagtatgt
    29881 taaagcttct cttttgcaag attcaaaggc attttcaaga tcttgttctt tatgaacaac
    29941 gcgaattccg cgtccacctc caccacctga agcttttaaa ataacaggat aaccaatctt
    30001 ctcagcaaaa attttaattt cttccatgct ataggaattt aatttttcag tccctggaac
    30061 aataggtatg ccatttttag ccattaactt acgagcgata tttttatttc ccatcttatg
    30121 gattacttca gattttggac ctataaaaat aattccagca tcttcacaag ccttagcaaa
    30181 ttcgtaattc tcacttaaaa atccataacc aggatggatc gcatcagcac cacaagcctt
    30241 agcaatctcg acaatacgag caacatctaa atatcctctt atagcatccg ttcctatgcg
    30301 ataagcctca tctgcgattt ttacatgcaa acattcacga tcaggctctg taaaaactgc
    30361 aacactttta atatgtaaat ctctacaagc acggattact ctaacagcta tttcagctct
    30421 atttgctatg agaattttat ggatttgatt cataatttgc cttttttgtt atatttttat
    30481 tgttaatttt agcaaatttt ccttacaaaa acttagcaaa aaatttaatt tattttagtt
    30541 ataataaaac tttttaaaat tttaattcca ataaagaaaa gttataatta taatggttgc
    30601 tgataaaaga ttattttatt taagttgtat tttaatcacc ataggaatag tattttcata
    30661 ctctcttaca gcttttactg ttctttttct tgactatagc gagtttcatt tttttattcg
    30721 tcagcttttt tttggaatta gtggcatact tataatgttt tttatttctc gattggatcc
    30781 tgataaagca ctttctaaaa aaattatttt agctattttg attatttctt ttatctttat
    30841 catcattttg ccatttttac cttctgcatt agcaacagct agcggaggag ctaaacgctg
    30901 gatacgctta ggcccactct ctatctctcc tgtggaattt tttaaaatag gattgattta
    30961 ttttttagca tggagctata caaggcgtat tgatgatagt aaaaaagcta tcagacacga
    31021 ggctttaatt cttctgcctt attgtatctt agcttctata gttataggat atatttatat
    31081 cactcaaaac gatttaggac aaagtgtaat ttctttcttt ttgattctag ctttagcttt
    31141 ttttgcagga gctagtaaaa gactttttgc ttttggaact ttaatcatta tgatgatagg
    31201 tataatggta atttttagta accaaagaag aattcaaaga atcgcttctt ggtgggggaa
    31261 tatacaagat gcttttttac ctatgcttcc tgattggctg gcaaatgctt taagagtaag
    31321 tagcaacagc gagccttatc aaatttcaca ctctttaaat gctatagccc atggaggaat
    31381 gtttggcgaa ggcctaggac ttggaacttt taaattaggc tttttaagtg aagtgcatac
    31441 tgactttgtt ctttcaggaa ttactgaaga aataggactt ttaggtcttg gggttatttg
    31501 ctatatttat ctttggatga ttttaagaat ttttagaatt gcaggaagat gtgaagctaa
    31561 acaagatttt attttttgtt caggcatagc cttactttta cttttttctt tctttatgaa
    31621 tgcttttggt attatttctc ttactccact aaaaggtgta gcggttccac ttttaagcta
    31681 tggaggaagt tcaatgtggg caatttgcat aggcatagga tatgtattaa tgatttcaaa
    31741 aaaggttaaa ttatgacaat agctttaaca ggtggtggaa ctggaggaca tttggccata
    31801 gtgcgttgct tattagaaag tgcgattaaa aaaaatatag aatgtgtata cataggcagt
    31861 caaaatggtc aagataaagc ttggtttgaa aatgaagtac gctttaagga aaaatttttt
    31921 ttaagctcta aaggagtggt taatcaaagc aaatttgaca aaatcagttc tttactccac
    31981 accttaaaac tctccaaaga ttgtagagaa atttttaaaa aataccacat ccaagccgtt
    32041 tttagtgtag gtggatacag tgcagctcct gcatcttttg cggctttatt ctcacatttg
    32101 cctcttttta tacatgaaca aaattcaaaa agcggctctt taaatatgct tttaaaacct
    32161 ttcgctacaa aattttttag cgcctttgaa aaagaaatta gcccttatcc tgtagcagat
    32221 aaattttttg ataatgctag gattcgcaaa gaattaaaaa atattatttt cttaggagga
    32281 tcacaaggag ctcaatttat caacgaacta gctttaaatt tagcaccaaa acttcaagaa
    32341 caaaatatca aaatcatcca tcaatgtgga aaaaatgatt ttgaaaagtg caaaaaacat
    32401 tatcaaagct taaatatcca agctgatatt tttgatttta gtttaaattt ggaagaaaaa
    32461 atgaaaaatg cagatctagc tatatcaaga gcaggtgcaa gtactctttt tgaactttgt
    32521 gctaatactt tgcccactat ttttatacct tatccttatg cagctaaaaa tcatcaatac
    32581 tttaatgcta aatttttaca agatcaagct ttatgtcaaa tttttatgca aaactctatt
    32641 aatcttgatg aattttttaa gtcaatatta aaactaaatc tagaaaatat ttctacaaga
    32701 ttgcaaaata taacccaaaa aaatggcgca gatatgctaa tccaaaaagc tttatttgat
    32761 aatttgactt ttataagata aatatccaaa gatatttact aaaattccaa caaaaactaa
    32821 catcaaaata gcaaatgaaa aattttcaaa tttgtcatgc aaaaaaccta taatccattg
    32881 tccttgtgct gcaattaaat atccaaaacc ctgagctaaa gcagaaagtc tcgctgctat
    32941 ttgagcatta gagctttttt gtgcaataaa aagcaacgca atgccaaaaa ctccacccca
    33001 tggaaaaccc atgataaaag cactgataat aatagaaatt ttactatcaa aaataaagag
    33061 cataccaaaa gcgatcacat acatactgca caaacctgct atgtaaaaag tatgtaaatt
    33121 ttgtcttaat tttcctaaaa gtaaagggcc aaaaagagac actggagctg caacaagttg
    33181 agcaaataaa accatacttg tagaaaattc tttatcaaat cctttttcta caacaatttg
    33241 aacataccaa aaaaacaaag aataagctaa aaaactttga aatcccataa aaagagtaat
    33301 tttccaagtt gttaaattta taaaaagatt gattttttta tgagcttttt tcttaatacg
    33361 aaaaaatcta ccatttttag cttgaggata gtaaactact aaagctacaa aagaaaaaat
    33421 agcccagaaa aacatagctc cagctaaatc aaatacacta agcaaaggta tagctaaagc
    33481 aatacctata atcgaagaaa tactcaaaac aagactataa attcccatta tacttgccat
    33541 tttttttgga aatttttctt taataaaact aggaagtaaa acatttgcaa ttgctatacc
    33601 acagcccatt gctaacattc ctaaaaataa gccatataca ccaaaataag aacgaataat
    33661 ttcgcctaaa aaaattaaaa aaattccaaa aacaatagca cgaataggag aaaaataccc
    33721 cacaataaaa gaaatacctc caaaagctat caaaggaaga cttgtaagta tgcctgctac
    33781 ggttgagttt aaataatact tatctttaat aatatcaata ataggcccca ctgcagtaat
    33841 tggggctcta agattaaaag ctacaataat aacaataata acattaatcc aaaatatctt
    33901 tttaaaagaa gccataaaag ccttatttgt taagttctac tttgaatatt ttaccttcta
    33961 ccatcttagg aatccataaa atattacctt caataaatat atctgcagga cctttcatca
    34021 aaggaagttc aagttttaca gatttaacat tatctaaatt ataaatatat ccatttagat
    34081 tatttcccca agaacttacc aataaaccat ctttataagg aactattcca tcataagatt
    34141 ctttttcatt tttaattata ctgagttctt ttgtatttaa atcataagcc attacaacac
    34201 cgccacttac accatcagga tgataaccag ttataaaaag cttatgtttt tttctatcta
    34261 gatataaccc atttggaccg ccaaattttg ctaaatcaag ttttaataat tcatcatatt
    34321 gcttagtttt taaatcaacc tttaaaataa gccctgtgcc agtatcgcta accaaaagcg
    34381 tattgtcgtc taatttttct atgtcattta aaaagattgc acctttaata ggtaaattaa
    34441 aaatttcttt tttagtttta agatcaaaac cgcgtaaaac atcgatatct accacataaa
    34501 gagtttttcc aatctccatc atgccttttg gtgcattaag atgggttaaa aatttatatt
    34561 ctagcacttt gccattttta tcaagcttag aaataaatcc atcattatct ttcgccaaag
    34621 gttcaagttt ttctcctaca ttagatacat aaacatagtt tttatctaca aaaatacttt
    34681 cagggctttt aaaaccatca aattcttgat attttaattc acttgcacca agcaaacttc
    34741 caagaagcgc taaacttaaa acatattttt tcatattttc tcctttattt aaaaatattt
    34801 tcattgaatt atatttattt agataaaaaa aatgtgctag ttttttgata aaaaatacaa
    34861 gttttttgtt ttttgatatt gcttaggagt ttgctcatat ttctctttaa atctttcaat
    34921 aaaccaagct accgaa
//
LOCUS       DAQSLY010000004        34834 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.004, whole genome shotgun sequence.
ACCESSION   DAQSLY010000004 DAQSLY010000000
VERSION     DAQSLY010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.004"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(44..1420)
                     /locus_tag="R2H98_000121"
     CDS             complement(44..1420)
                     /locus_tag="R2H98_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEE9023053.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            1574..2503
                     /locus_tag="R2H98_000122"
     CDS             1574..2503
                     /locus_tag="R2H98_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 domain-containing protein"
                     /protein_id="HEE9023054.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(2551..3867)
                     /locus_tag="R2H98_000123"
     CDS             complement(2551..3867)
                     /locus_tag="R2H98_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEE9023055.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMAKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFGNFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAMGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(4048..4983)
                     /locus_tag="R2H98_000124"
     CDS             complement(4048..4983)
                     /locus_tag="R2H98_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEE9023056.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDKNK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            5054..6286
                     /locus_tag="R2H98_000125"
     CDS             5054..6286
                     /locus_tag="R2H98_000125"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEE9023057.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGVMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLNIQ
                     KISIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENTLAYFNNSNLEIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            6283..7368
                     /locus_tag="R2H98_000126"
     CDS             6283..7368
                     /locus_tag="R2H98_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEE9023058.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(7365..8162)
                     /locus_tag="R2H98_000127"
     CDS             complement(7365..8162)
                     /locus_tag="R2H98_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEE9023059.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GALVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(8173..9465)
                     /locus_tag="R2H98_000128"
     CDS             complement(8173..9465)
                     /locus_tag="R2H98_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEE9023060.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGVIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(9584..10588)
                     /locus_tag="R2H98_000129"
     CDS             complement(9584..10588)
                     /locus_tag="R2H98_000129"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEE9023061.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(10598..11551)
                     /locus_tag="R2H98_000130"
     CDS             complement(10598..11551)
                     /locus_tag="R2H98_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEE9023062.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPHLSFFENKNATLMALIIGIIISSIVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(11538..12230)
                     /locus_tag="R2H98_000131"
     CDS             complement(11538..12230)
                     /locus_tag="R2H98_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEE9023063.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(12388..12957)
                     /gene="efp"
                     /locus_tag="R2H98_000132"
     CDS             complement(12388..12957)
                     /gene="efp"
                     /locus_tag="R2H98_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEE9023064.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            13071..13391
                     /gene="rnpB"
                     /locus_tag="R2H98_000133"
     ncRNA           13071..13391
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="R2H98_000133"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(13389..13664)
                     /locus_tag="R2H98_000134"
     CDS             complement(13389..13664)
                     /locus_tag="R2H98_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023065.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(13645..14031)
                     /gene="fliS"
                     /locus_tag="R2H98_000135"
     CDS             complement(13645..14031)
                     /gene="fliS"
                     /locus_tag="R2H98_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEE9023066.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(14043..15953)
                     /gene="fliD"
                     /locus_tag="R2H98_000136"
     CDS             complement(14043..15953)
                     /gene="fliD"
                     /locus_tag="R2H98_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEE9023067.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYKKDTNA
                     EKIFGDLGWELDTTSSIDPDKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEKKVKEDPDSAESFFSNITKYEDINHTGEVIKTGSLNKYLTNGLEFKPGD
                     FTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVESYNQNN
                     VTGFRLNFSGDGSSDFSIKGNASILKELGLSDVNITSKPIEGKGIFSKLKATLQEMTG
                     KDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLNQQLNTV
                     TNMINAANNSNN"
     gene            complement(15956..16321)
                     /gene="flaG"
                     /locus_tag="R2H98_000137"
     CDS             complement(15956..16321)
                     /gene="flaG"
                     /locus_tag="R2H98_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEE9023068.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(16477..18279)
                     /locus_tag="R2H98_000138"
     CDS             complement(16477..18279)
                     /locus_tag="R2H98_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEE9023069.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(18276..19199)
                     /gene="hemC"
                     /locus_tag="R2H98_000139"
     CDS             complement(18276..19199)
                     /gene="hemC"
                     /locus_tag="R2H98_000139"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEE9023070.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(19196..19585)
                     /locus_tag="R2H98_000140"
     CDS             complement(19196..19585)
                     /locus_tag="R2H98_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEE9023071.1"
                     /translation="MNYKLSLSPLFVLEIIASVLFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYAKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(19582..21291)
                     /locus_tag="R2H98_000141"
     CDS             complement(19582..21291)
                     /locus_tag="R2H98_000141"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEE9023072.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDECPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREGLVKELIKTDELMEILKK
                     KVL"
     gene            complement(21275..22573)
                     /locus_tag="R2H98_000142"
     CDS             complement(21275..22573)
                     /locus_tag="R2H98_000142"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEE9023073.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(22573..23466)
                     /locus_tag="R2H98_000143"
     CDS             complement(22573..23466)
                     /locus_tag="R2H98_000143"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEE9023074.1"
                     /translation="MQKIDELIKQFLEELGYEPILNMLSNVKPGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(23480..24016)
                     /locus_tag="R2H98_000144"
     CDS             complement(23480..24016)
                     /locus_tag="R2H98_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEE9023075.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERVSVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(24019..24282)
                     /locus_tag="R2H98_000145"
     CDS             complement(24019..24282)
                     /locus_tag="R2H98_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEE9023076.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGNLGALEKVFEEFFADHIAMVE
                     LLEKQGLTEMDVKNFILVNGDFIEERQNDIYIELGAKILGHEG"
     gene            complement(24421..24978)
                     /locus_tag="R2H98_000146"
     CDS             complement(24421..24978)
                     /locus_tag="R2H98_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEE9023077.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(24975..25820)
                     /locus_tag="R2H98_000147"
     CDS             complement(24975..25820)
                     /locus_tag="R2H98_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEE9023078.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(25821..26945)
                     /locus_tag="R2H98_000148"
     CDS             complement(25821..26945)
                     /locus_tag="R2H98_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEE9023079.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(26954..27265)
                     /locus_tag="R2H98_000149"
     CDS             complement(26954..27265)
                     /locus_tag="R2H98_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEE9023080.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(27279..28148)
                     /gene="sucD"
                     /locus_tag="R2H98_000150"
     CDS             complement(27279..28148)
                     /gene="sucD"
                     /locus_tag="R2H98_000150"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEE9023081.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(28158..29321)
                     /gene="sucC"
                     /locus_tag="R2H98_000151"
     CDS             complement(28158..29321)
                     /gene="sucC"
                     /locus_tag="R2H98_000151"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEE9023082.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(29322..30224)
                     /locus_tag="R2H98_000152"
     CDS             complement(29322..30224)
                     /locus_tag="R2H98_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEE9023083.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(30221..32425)
                     /locus_tag="R2H98_000153"
     CDS             complement(30221..32425)
                     /locus_tag="R2H98_000153"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEE9023084.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(32542..34785)
                     /locus_tag="R2H98_000154"
     CDS             complement(32542..34785)
                     /locus_tag="R2H98_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEE9023085.1"
                     /translation="MRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIKKLLLKDYDL
                     SIDGNLSINTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRV
                     NKRIELPQSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLD
                     DKMNAIEIPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKS
                     DNLKFDEKLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASI
                     SLADFNIIKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFD
                     NGELLDLKNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKK
                     LGFIDAKNVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHT
                     QSDTASAKISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNISFGGANVALILAD
                     SNKTLAFDRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQ
                     AVQDGVFNLSIKGSGLEYFDGQIDFKNTYVKDLKGINQLISFIDTVPSLLMFKSPTFN
                     QKGLSLHDGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKS
                     ASEAISKVPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQ
                     LPANLLN"
BASE COUNT        11819 a         6486 c         4296 g        12233 t
ORIGIN      
        1 gtaaaaaata actttaaaat attaaaaact tattttatta aagctagcct gtaaattcag
       61 tagtttcata gcctataggt ttatctacaa aacaagattt ttcttttaaa aatacaactt
      121 ctatagttcc aacaggtcca tttctatttt ttccaacaat aatttcagca ttttcttgca
      181 taggatttgg tataaaaagc ctttgataag ctttgccttc ggctttagct ttattctctc
      241 tttctttttc ttcttgttct ctataaacct catcgcgata tacaaacaaa atagcatccg
      301 catcttgctc tatagctcca ctttctcgca aatcactcat caaaggacgc ttatttgccc
      361 tttgctctaa gccacgatta agttgtgaaa gtgcgataat aggcatatca agttccctag
      421 ccaaaagctt aagtcctctt gaaatttcac taacttgcaa atgtctatca ttaaaatttg
      481 aattactcat cataagccct atatagtcaa tcacacaaag tcctatactt tcatcttgag
      541 attttaaacg ccttaaaata gcccttacat cagcaatagt tgcataacca ctatcgtaaa
      601 tatataattt cttttgacta taatcattgc aagcatctcc taaacgctcc cattcatcat
      661 cgtttaaatc tgcagttaaa attttttgca aaggaataga agttttagaa gatagcattc
      721 tttgcatgat ttgagttgca ggcatttcaa gagaaaataa agccacgcct tttttttgtc
      781 ttaaaacctt atcaatgaaa tttaaacaaa gagttgtctt tcccatacct ggacgcgcgg
      841 cgattattat aagttcaccc cctttaaagc cttttgtcat tttatttaga ccttcaaaac
      901 ctgtatcaag ccctataata cctttatttt ctaaagtttt ttgcttttta aattcttcaa
      961 aaagttctga tattaccata tcaacatctt taatatctct agaattcaca cgatttgtaa
     1021 tgctaaaaat ttctttacca atttcatctg cgatttcact tacagcacga tcttcattga
     1081 tacgagttgg caaaagatgt gcaaaactca agagttgtct ttttacggac ttttcgtgaa
     1141 gttcatttac ataagcaggc aaatctatca tagaaggagt ggcaagaatt tctgctaaaa
     1201 tttgctcatc tattttttta tgttttctta aaaaacttac agaaatgggc tctttgttat
     1261 tactacaagc tataaccgct ttaaaaatat cttggtgagc tttaagacta aaatcttttg
     1321 ggctaatatc acctgctata ctagcataag cttcttcact catgatacaa ctgcttaaaa
     1381 tagctcgttc taaatccaag tcataatact cttgctgcac taaatttcct tataaatata
     1441 aattaattct aaaaattcta tctaaaaaaa cttaaattat aaaacttaat ttttttataa
     1501 atatttaatg taatattagt tacaattata aatgtaattt aattacaaac aacaaacatt
     1561 tcaaggagaa catttgaaaa aatatttatt ttcctgtgtt ttagcctcca ttttaaccca
     1621 atcagctacg gctgtagaat ttcaagaagg ttttagtgga aatttaagca taggtgtggg
     1681 tgcaagggat attaaaagta atatttcaac cttggcaaac agcgattatc taagcagtca
     1741 caatgctgat aattcagact cctctttcat tccttttatc ggtgcagaac tttactatgg
     1801 taatcttata gataatgata gaatttttat taaaaactac aatggaagag atatcagcgg
     1861 tatagcttta ggctacgaaa gagcttattt agagcgtttt agcacttctt tttctgtaat
     1921 ttcctcttta agagaaaaag cttatgcaaa tccttatgta ataggaaata gagaagaaac
     1981 tgatgttgat agatatggtt ttaaaatctc tcaactttat gaaagtgatt ttgggaaatt
     2041 taccacttca tatttattta gcaaaaacaa atatgataaa gacactatcg cacaaagctc
     2101 tttaaaaagg gagggatatt atcacgaaat tgaattaaac tataattata gcttattaaa
     2161 cctagggtta aattatgatt acaatgatgc agacggaaaa gctcaaagct attcaagata
     2221 tggttttagt ataggaacaa atttggcttt tgctaatgat tacatcttca ctccaaattt
     2281 aaatcttagc aaatatgaag cagtaggaac tgatcctatc tttcacaaaa aacaagatgg
     2341 taatatagtt aagcttaatt taaaagttgt taaaaatcaa tttttgggtt ataacggact
     2401 ttatggtttt gcaaattatg gcatagaaaa aagaaatagc gatataggat tttatgatga
     2461 aacctatcaa attgtcctaa ctggtatagg atataaattc taaaaattat aaaaaagctc
     2521 ctttgataaa atttaaaaaa gatctatctc ctataaagat agatctttaa aaattctttt
     2581 aagaaaaatc caagctaaaa tcaaaacaca aaattcagca aaaaatggac ttagccatac
     2641 tccatttaaa cccataaaac aagataaaaa caaaggtata aataaatttt gcgccaaact
     2701 taaaaccaaa gaaaagcttg ccttattaaa agctgtcaaa aaagaaccac ttagaacatt
     2761 aaaccatgca aaaaaataat taaaagcaaa aagcatcaaa gctgtataag caaaagtttt
     2821 aaattcttga ttgttttctt ttgtaaaaag cgtgattaaa ttttctccaa atatcaatat
     2881 aagcactata gagaataaag ataaaaatcc ccctgcaaaa aataccactt ttacaatagc
     2941 tttgattctt gaaaaatctt ttttagcata gttgtaacta agcgcaggct gcattgcatc
     3001 acccatagca ataataagca ttataataaa actatcaata tataaaacta tagaaaaggc
     3061 tgccacggct tgagtatcag aaatttttaa taaaacaaaa tttccaaaaa tactatataa
     3121 agatcctgaa atattgccaa aaaactcact gcttccgtta taaagaatat ttttaaaaat
     3181 ttttaaattc atgtataggc ttgaaatttt aagctctaaa ttttgaaaca agaaaggaaa
     3241 aattccaaaa ataccaccta aaacaagtcc caaacaagtt gcaagagcag ctgaaaataa
     3301 gccccaaccc aactcgacta taaaaatata atcaagcact atattgctta atgctataat
     3361 cacattcatt accatactat aagcagtttt tccgcaaatt cttaaataat tatccaaagc
     3421 aaaagaaagc atagtaaagg gtgcaaacaa agcaaaaaca aacatacatt ctttagccat
     3481 cgttttaatc tcatcgctaa catttaaaca atcaatcaaa acaggtccta aaaaatactc
     3541 taaaattcca ataaaacaag agattataaa aataatcaac atacttgagc taaatatctt
     3601 tctagctaaa ttcttcttgc ctaaacctaa atgcatagaa atttgcactg ctgatcctat
     3661 ggctatcata tcagccaaag caaaagacat catgataaag ggaataatca aggctagtgc
     3721 cgctaaagca tcacttccta gatattttcc aacaaaaatt ccatcaacta tataataaaa
     3781 agaaataaaa gccatgctta taacatttgg cacggcacat tttacaaaaa gcctaaaagg
     3841 gcttaaggtg ctaaaaatac ttgacataat aatccttaaa atatttaaaa ttaaaaatat
     3901 tttaaaccgc taataaaatg ccaaaagtcc taatatgtaa gaatttaaat aaagtaattt
     3961 cgcaataagt ttattaatat ttattttatt ttgcatatga attttctaga ttaaactaaa
     4021 ataaaaattt agcccaaagg ctaaatttta aagcacagaa agaattttca cagcgtcatt
     4081 taaccctgta actatacttg ctccattttt agtagcaata tctcctgcta caaagatgcc
     4141 tttaacattg ctttgtttgt ttttatccat taaaggcacg cctttatcat caacattaat
     4201 cccacatttt tgtaaaaaat caagtggagt agaaccacca atagcataaa tgattctatc
     4261 ataaatatca cttgtaccat cggtaaaatt tactttagct ttgccattat catcttctac
     4321 ttcattaatg tcaattccta attttaactc taccttaccc gaatttccag cttcgtgaat
     4381 atctttaaga tttatatcat ttaatcttgt aaattctttt ttacgataac aaaggctaac
     4441 ttgatttgaa tttgccaaat ccacagcgta ttctgctgct gaatttccgc cacctacaac
     4501 aagaattttt tcatttccca aaactgaatt ggcattaaaa ttaatgattt ttgttaaagt
     4561 cataggaagt ttgtaatcag gtttattagg tttacccatt ctacctatag caacaataat
     4621 gtttttacac tcataaacac ctttagctgt acttactaaa aaaactccat tttcattttt
     4681 aacgctctca acttcagaac caaattcaac ttctatattg tgctctttta aagcgttttg
     4741 aaaagtttct atagtgcttt ctttggtgcc atcttcaaaa ggaacatgtc cgtgattggt
     4801 tccttcgcat cccttataag ctttatctac tcttttgcca tccttataaa attgcattaa
     4861 agtttgacaa atgttatttg atttttctag tatcaaaact tctttgtttt taagcttggc
     4921 ttcaactgca cagcctatcc ctgttggacc tgcacctact acaattaaat ctattttttt
     4981 catttatatt tacctttcaa ttctaaattt ttttgtataa tttatcaagt tttttgtaaa
     5041 taaaggatta aaaatgcgaa atttgcttga aaatattaag aaaaattctc aaaaactact
     5101 taacttaacg cccaaagata aagaaaaaat tattctaaaa ttagctcaaa ttttaagaga
     5161 aaatttcaaa attatcctag aagcaaataa aaaagatatg gcaaatttca caaaaagcgg
     5221 agtaatgaaa gataggcttt tgttagatga aaaacgtatt ttagctcttt gcgaaggcct
     5281 agaaaaaatc gcttacatcg aagatcctat aggcaaaatt tctaaaggct ggaaaaatta
     5341 tgcgggttta aacatacaaa aaataagcat tcctttagga ctcatttgtg ttatttacga
     5401 agcaaggcct agtcttagcg ctgaaatcgc agctttaatg ataaaaagtt ccaatgcttg
     5461 tgtatttaaa ggcggaagtg aagcaaaatt tacaaatgag gctatattta ctcttgttaa
     5521 taaagtactt aaggaatttg atttgcaaga ttgttttgct atgtttaccc aaagagatga
     5581 aatcttgcaa attctagcct ttgatgattt aatcgatgtg atcatacctc gcggaagttc
     5641 aaatatgata caagaaattg caaacaatac caaaattcct ctcattaagc aaaataaagg
     5701 cttgtgtcat gcttttgtag atcaaagtgc taacttagat atggctttaa aaataatcct
     5761 taatgcaaag tgtcaaagag taagtgtttg taacgcttta gaaacgcttt taatccatga
     5821 aaaaattgct aaaaatttta taagtctttt aatacctgaa tttgaaaaat ttaaggtaaa
     5881 aattcacgcc catgaaaata ctttggctta ttttaacaac tcaaatttag aaatttttaa
     5941 agcaaatgaa aatacctttg atacagaatg gcttgatttt gctttaagtg taaaattagt
     6001 aaaagattgc gatgaagcta tagagcatat caataaacac agctccttgc attctgaaac
     6061 cattatctca aatgatgctt caaatatcgc taaatttcaa cgccttataa actcatcttg
     6121 tatttatgct aatgcttcaa cgcgttttag cgatggagga gaatttggct ttggtggaga
     6181 agttggaatt tcaaccagca aattgcatgc aagaggtcct atggggattg aagatatttg
     6241 cacttataaa tatataatca atggggaagg acaaattcga gagtgaataa aatagaaata
     6301 ctaaagcaac actttaaaga aattgctaaa ttaaattcaa gcgaacaagt ttggcaaatg
     6361 cctttttttg cggctttagg cgtaggtata gttttagggc ttagtgtatt ttttggaaaa
     6421 ttaaactatg gactcattgc catgatagga gctttgtctt ttttatatgt tccaaacact
     6481 cctttatatc atagaatggc tgttgtgatg tgctgttctt ttggcatagt ttctagtttt
     6541 ttcttaggaa ttttaactca ttttttgcct gcaatttttg ccttcatccc tataggaatt
     6601 atggccatgg gaagttctat tttaattaga tactataaca ttggtgcacc tggatatttt
     6661 ttctttgtat tttcttgtgt tttaggagcc tattctcctt ttgaagctaa ggattttatc
     6721 tttttagtag gtcttgtttt tcttggagca atggtagcta atttaatggc tttgttatat
     6781 tctatcgttg tgatttatgg atttaaaaat gctttaccta gcgaaattcc acctagagaa
     6841 tatataggtt ttgatgcagt ttttgtggat tctttgatca tgggttcttt tgtggctttt
     6901 tctatattta taggaacttt tttagaactt gaaagaagtt attggatagc catttcttgt
     6961 acagctatta tgcaaggtgt aactttaaat tctatatgga ttaaacaaat tcaacgcatc
     7021 ataggaacgg ccttaggagt atgttttgca tggtggcttt tatctaaaca atttcacgat
     7081 atagagctta ttttacttat gatgtctttg ttttttatag gacaattttt agtcaatcga
     7141 aactatgctt tagctatgat tttctttact ccttatgcta cttatctttc ggaagcagct
     7201 aattttatga gtgaaaatgc agataaatta atactcgctc gtttaattga tgttgtaata
     7261 ggaagcattt tagggctttt aggtggtttt gtgatttaca aaccttatct aagagtgcat
     7321 tttgaacgca ttgcaaaata catctttagg ataaaacaaa aagcttaaaa gccaaataaa
     7381 gcacaagcat tatcccctaa aatttgctct tgttcttttt tagatacgac aacttcatta
     7441 aaagctacta gagccgatga aaaattaaca tttgattcaa aatttgtatg tggccaatcg
     7501 cttccaaaaa caaaattgct aagtggaaaa tgttctttta aaatttcata tattttcttt
     7561 gcaaatttta cagcttgttc attattagca taatctattt ttgctctata aaaaccgcta
     7621 attttaaaaa atattctaga gttttttaag caaattaaat cctctaaatt tgttaagttt
     7681 gcattagctc ttgctaaatg atcgataaca atattacaac cataaggaat taaattttca
     7741 acaatatcaa caagattatt atctaaatct ctttgaattt ctatttgcat tttaagctta
     7801 cttaaatttt caaaaaattg agtccaaacc atacttttaa aatttggtaa ttctttgcca
     7861 attaaattta atctaactcc acaagctttt ctttctttta gttttttaag ctcatcaaat
     7921 ttaatatttt catcaaccac aactatagct tttatatttt catctttttc tatactctga
     7981 agcaaaaatt cattatcaat acctaaaaaa cttggctgaa ctaaagcccc tttattaaaa
     8041 tcataatgat ctaaatttgc tttataatct ttaaaactag cgtcataatc aggcttatat
     8101 cttgcatttg caaccgtatt taactttttc aaaaatatat gtgcgtgagt atcaatcttc
     8161 attaaattat ccttataaaa taaaactcat tataatagta gctaaaatcg ccgctataaa
     8221 tcctataggc acagccttaa taagcaaatc tttaaataat ttttccttat atttatcagg
     8281 gcaagatcct aaaattagac ttcctccaga agaaaaagga gaaatagcag aagcttgagc
     8341 ccctacaaca atacaagaaa aaagcaatgc ctcgcttaat ccactgcttg cagcaatgct
     8401 tggaactata ggaaaaagcg ctggagtaac cacacccaaa gtacttgaaa aaagcgacat
     8461 aaaagctgca atagcacaca ttattaacgg aataaaaatc acattgatct cattttctac
     8521 aagatctgaa aataatttta taacccctgc ttcaactgct atgctaatta acatccctac
     8581 tccacaaatc attatcaagg ttccccaagg aattaaagca acaacttgtt tctcatcggc
     8641 taattttaaa aataaagcaa tagcaacaaa aatcatggct atcatggcta tatctatttt
     8701 tttattaaaa taactaattg tctcattatg tggaaaaata atatttagca caggaaagat
     8761 taaaacaaca acaatcatca taaacatgag aattaaagta gttttttgtt tataatcaaa
     8821 tggatcaggt tttgaaataa cactaatttt tatattattt ttaaaagcat taaacacaaa
     8881 aaaagataat accacaatag gcaagattat agtaaaagca aaaataatac tagaatttgc
     8941 aaaagcttca tttgcttcaa tgcctgaatt ttccatcaat cctcgaaaaa taatcccgct
     9001 ttgagaagtc ataaaatttg ctcctcccaa agcaccataa tttatagcca tagctccagc
     9061 aattttgctt aaaccgattt tatcgcaaag taaaaaagta agtggtgcca taaaagctaa
     9121 aactgtataa aaacctgctc ctaaagcagc tataatagca ctaaccacaa aaataacaaa
     9181 aggaagcaaa taaggatgat tagcaaaacg atacatcaaa tgtccagcta atttttcaag
     9241 agttccattt acggttgcaa aattataaaa caatgagaca gcaaaaataa caaaaaatat
     9301 agaaataggc caaaaagcta tgattttttt aggagctaaa tccataaaaa aagctcctat
     9361 aatataagca aaaatcatag caaaaattcc aacattatgt ctagtaatat agcccaaaat
     9421 aatagccact ataatactag agatgattaa aaaaaccatt atcatccttt aaaatattat
     9481 agggcttata atatcaaaaa atatattttt caaagcataa aaacaaaatc taaatttaaa
     9541 aaatatctat ttagcaacaa atttactcat cttatgaaat tttttataaa atatccacat
     9601 ccagagcaag caaagcaaag cttcctagcc aatgcgaccc aagataatca tcttctatat
     9661 gagctatagc tttatcaaaa tgctctgtag cattgtttct taaaagaatt tttaaatttt
     9721 catcgcaaaa atttgaaagt attttaaaac accaagcacg gcttaaattt aacccatcta
     9781 aatgtgctat tttaccatcg ctcctatcac tcacactcac aggggtaaat aaagttgcag
     9841 gctcttttgc ttctaaattt ggcaaatatg ctttaaaaaa ttttacaaaa tcatttttat
     9901 gtaaaacagc acttaaaagc accgcttcca tcaaaacagg agataaaaac tcatctccac
     9961 aaggctctaa agcttgcata tttttatcat ttaaaaacca ctttttagca ctttggatga
    10021 tgcaatactc caattcttga tcttttttaa atcttgcata ttctaaagca aaatacaaag
    10081 caaaagagct attaaaatgg gttccaactc gtataggata atccatctta ggtaaaaact
    10141 ccttaaattc tttaacaaag aaatcagcta tgccttctaa atttttagcc caaatttcag
    10201 ctttgtcatt ttctttagca agtaaattta tctccaaagt cagttttaaa aaccatcccc
    10261 atccataagg tctttcaaaa cctttgtgtg cagggttttg aagatattta agctctcctt
    10321 ctgctttttc tttgctaaat tgagaatcta gagctttgat gatttcatcc tttggagcaa
    10381 aatgagaaaa atcttttaaa attttcacca aaagccagtg agaatgcacg ctagaatgcc
    10441 aatcataaga accataaaat ataggataca taagttttgg cggtttaata tcattgatat
    10501 cattaaaaga atgtgtgatt ttatttggca attctctaaa aatattttct agtgcaataa
    10561 agctaaattg ttttataaat ttttccattg tttctcctta aaatctaaaa gctaaaaaat
    10621 acattaaaaa gatattagct acaagcaaaa caagtcctga cataaactgg gctttaatta
    10681 cgccattttt atcatccaaa tttaaaagtg ccgcaggaac tatattaaaa tttgcagcca
    10741 taggcgtcat taaagttccg caaaatccac taagcattcc aatcgcacct ataatagcag
    10801 gatttgcatg catttgtatg attaaaatcg gcaaagcaat agcagcagta atcacaggaa
    10861 aagctgcaaa agcattgccc attactatag taaaaagcgc catagcgata caatacacag
    10921 ctactgcaat aaaagcatta tccaaactaa tataactaga taaaagttta gatacttgat
    10981 cgcccattcc tgtagaaaca aaaactaccc caagtgtagc caaaatttgc ggtaaaagcg
    11041 ccgcccaact aatgtgatcc atagtatgtg ctgcatcttt aacagctctt ttaggagaag
    11101 ccttaaacat aaaacaagca actattgaag aaataattat acctataatc aaagccatca
    11161 atgtagcatt tttattttca aaaaaactca aatggggaaa taaaaaagtc ccaataagtg
    11221 taatcaaagg aaccattaaa gcaggaataa aaagtttatt tttataaata tttgcatgtt
    11281 ttatctcgta ttctttttct tctttgctaa cttcgatctt tgctggtttt aataaattaa
    11341 accctgctat aagtgctagt aaaatcacta tacaacccat cacaaaatga ggcaaaactc
    11401 ctgctagtaa aaaagtaaaa ctataactta tccaaaatac cccgccgctt attcttgatt
    11461 ttatatcttt agcttgatta gaaaaactta aaattccaaa aactaaaaat aaaattccta
    11521 caatataata aagtaaatca agacttatca tcactcaacc ctttataagt tttttccaat
    11581 cttttatcaa ataaataaag tctagagcaa tggataatta aagccaaaat tccagttggt
    11641 atagcccaaa ctgataaatg caatggctca acaataatac cattgctctc ataaaaagct
    11701 ttaataaata aaatagaatg cacggctata aaaatatcct ctccaaaaaa tacagcaaca
    11761 ttatccgttc ccgcagaaaa agctttgatt ttttgactat ctttatgtgt taagttttta
    11821 aatttaagct tagctgcagc ttctgccata ggggctatta aaggtcttat catctgtgca
    11881 tgtccgccta aagataaaag ccctaaagct gcagtaactt gtctaaaaac aaaataacac
    11941 attaaaattc gtcctgtact ggcaactttt attttggata ttaaattttt agcctgctct
    12001 cttaagcctt tgcgttccaa aacagcaagt aaaggtaaaa taagccaaat tatagcaaca
    12061 tagcgattat ctacaaaaga ttttcctata tcactaacaa ccttaacaaa atcaaaacct
    12121 gaaacaagtc cagcataaat tccaactgaa gttaccacta aaaaggggtt aatctttaaa
    12181 gcaaaaccta aaacaatcaa aggtatagaa gcaagaagta accattccat caaccatctc
    12241 caatatgaat tagaaatatt atagaaattt taaattgaag aaaagtttaa aaaaatattt
    12301 ttaagaatgg aatgagaaat taagtaacaa aataaatttt atataaattt aaaaaagcct
    12361 tggaatagtc caaaagcttt ttttgtatta tttgttcgct ctttctatat actcaccacg
    12421 cacagtatca acgcgtataa cttcaccttc taacacatga aaaggaattt gcactactgc
    12481 gcctgtttcc aatgtagccg gttttttatt tgatccttga gtatcaccct taaaatttgg
    12541 agctgtttcg atgattttga gttcaacaac ttgtggaact tctacgccga tagctttacc
    12601 attatggaaa agcacatcta ccatcatacc atcaagcatc cattttttcg cctcacctac
    12661 atcatcatca ctaatagcta cttgttcata tgtttgcgta tccataaatt ggcaattttc
    12721 accatcatca taaagatact gcatagtttt atcttctaaa tttggagctt cacatttatc
    12781 acctgcatgg aaagtttttt caagtacttt accatcaata aaagatttga ttttaatacg
    12841 cacaaaagca ggacctttgc ctggttttac atgctgatac tcaactattt taaaaggaat
    12901 tccatcgatt tctattttaa gtcccttttt taaatcaccc attgaataag atgccataaa
    12961 tttcctttgt taaaaaataa aaaacaattt tatcaaattt tgattgatat cacaataaaa
    13021 ttattttatt tgatgaaaaa ataagtaaaa ttacgttaaa atccaaattt aaagcatagt
    13081 aaatgctcgc ttctttttag gagaggaaag tccgagctgc taaagacaaa cattccatct
    13141 aacagatggc tagggtaacc taagggatag tgcaacagaa agaaaactac cacgtaagtg
    13201 gaaaaggtga aacggcgggg taaaagccca ccagcgattt tggtaacaat ttcggctatg
    13261 taaacccaat gtgcagcaag aagggatggt tagcgtcttt gttttaaccc ttcgcttgat
    13321 tttgtttgca aaaacaaaac tagataaatg agcattcaag acagaactcg gcttatcgct
    13381 atgctttttt aagatttaaa atatgtcaac gctttttgaa atttttgaat ttcaacagct
    13441 tttgtttttt tcttttgttc aatcagtata acagcttctt gcaaaagagc ttgaacttga
    13501 taaaatacat catttgcatt ttcttttaaa aaatcttctg aaggcgattc tttggctaaa
    13561 tttttaataa aagctttcat atcaagttca tcaagtaaat tttcaagttt attgacatct
    13621 tcttggatta atgcaagttt aaaatcactg agccactgtt tcattgttat gcacttctct
    13681 ccaagcttct agcaaacctt tggttacatt tataacttca ttgattctat cttcgttatt
    13741 ttctaaattt gccaaagata aaagttgaat ttctcttgta taaagcccgc ttaaataatg
    13801 tgccacttct ccgccttttt catagtttaa agtattaata agctctataa aaatagccgt
    13861 ggttcttttt acaaaataca ctctttgttc tatatcttca tttcttatgg ctactttagc
    13921 tcttgcacaa aaacgcaaaa ttccctcata aagcatttca ataagttttt gcggagactc
    13981 tatccccact tgattttgag aataagcatt ataggctaaa ttattttgca tcttttttat
    14041 ccttaattat tagaattgtt tgccgcatta atcatattag ttacagtatt tagctgttga
    14101 ttgagtttat ttaaaatact ctcatattgc aaccattgat tcgccattgt atcatatctt
    14161 gtatcaatca tagcctgagt cgagtcttta gaggtattta atgatttaat atcatttgtc
    14221 aaactctcat catattttgt aattgaacca tcttttccag tcatctcttg caacgtggct
    14281 tttaattttg aaaaaatacc tttaccttct ataggcttag aggttatatt tacatcagac
    14341 aaacctaatt ccttgagaat gctagcattt cctttgattg aaaaatccga actaccatct
    14401 ccactaaaat tcaacctaaa ccctgtaaca ttgttttgat tataggattc aaccttaact
    14461 tttaagcctt caataccttt actgtttata tgattagcta aattttgaag caattcttcc
    14521 tctgttttcc ctgttaattt aaaattagta ccatcagaat ttttagataa atcatatgtt
    14581 tgattattaa aaactatagt aaaatctcct ggtttaaatt ctaaaccatt ggtaagatat
    14641 ttatttaaac ttcctgtctt aattacctct cctgtgtgat taatgtcttc gtatttagta
    14701 atatttgaaa aaaaactttc agcagagtct ggatcttctt taactttttt ttcaaattta
    14761 gaagaatcaa aactcaaagt gcctgcatca tttaaactta agccaaaatc ctgcatagaa
    14821 agcataacct tagtgtttac tttattacca tttgcatctt cagtagttcc atcaacaact
    14881 tgagaatcaa acaaatcagc aagaatgctt gagcgtattg aatttacttc actgatgcct
    14941 tgtaaagttc cttttgttcc agtttcacta ttatagtcag ttgcagcatt aagattggtt
    15001 actaaatcat tataagcatc caccaaatct tgcatggctt ttgtcacacc ttcaaaatct
    15061 tgctgtacat caaaattaat ttcacctgtt ttatttaaag ttaaagtcat tcctacacca
    15121 agatcggtaa cagtattact tgatctaaac atcttaatac catcaagtgt gaattctgca
    15181 ttttgcgcag tttggatatg caaagaagca tccttaatgc cataaccttt tttatcctta
    15241 tctggatcaa tagaactcgt tgtatctaat tcccatccaa gatcgccgaa tattttttct
    15301 gcatttgtat cttttttata tttaccattc gaatcttttt ttcccgcata gaaacttatc
    15361 gcactgtctt cgcctgtttc tttgctggtt aaagttaagc ggtaaggagt gcctttctct
    15421 cctgtgttta caatcttagc aacaatctct cctccactag cttcattaat tttatcagct
    15481 aaatctctat aggttgtgtt tttatctacc gtaacagtat attctttgcc atttgaaaaa
    15541 aaagtaagat cggcagttcc atttaattgt gcattaacaa aaccaccgtc atttgctaat
    15601 cctttacttt gatacacatc tttttgtgca agttgagtaa cattgatatt catgctttgt
    15661 aaagcaacac ccgaattaac tgtaagactt gctggaggat tatcgctaat acttcctaca
    15721 acttttcttt tcgcaaaaac cgtagcatcg gctaatgatg aaacagccgt ctgaaaactt
    15781 agtaatttag ttttgatttc tgttaaatct ttttgtttgg ttgtattttc ttcaattttt
    15841 ttagtataag gatcaatacg agctttttgc tctgcttctt ttaatttatc tatagtatct
    15901 tgagttaaaa ccccagaacc aaatcctaaa ctagatagac taccaaatgc catttttaac
    15961 tctccttatc aaatatcatt cctatcacat ccctaaaata ctcagctaat ctcatagctt
    16021 cttcactagg aatttgacgg atttcccttc cagtactttt ttcagtcacg ctaatataca
    16081 tagaaccgat tttatcacta taaccaaaac gaacattggt atctagagaa tccatttgct
    16141 catttaactt ttttgtaata tcagccaact tttcactcac acctcgttgc tgtccatcat
    16201 cgccttcttg gccttgactt ctatcggttt gaatgtttaa actagcctgt gtctcacttg
    16261 ttctttggct aatgtttgcc aaagctgtat ccatttgccc atttgccttc gatatttcca
    16321 ttttaaaatc ctttttaaaa tttcctattg ctagttaaaa gcttatatcg acaaatttat
    16381 aaatttatga acacctataa agaaaatttt atttttcaat aataaaaaat aataagcaaa
    16441 aactgtgcca aaattttaaa ataaatctca attatcttaa aaaatttcaa atttattaaa
    16501 aagatctgga ttattttcta aaatattacg caagatcaaa tcttctatca cgcttttagt
    16561 gcaatctgtt tgcttaggcc aagctcttaa ataaccctca gcttcacctt tagcacttgc
    16621 atctactcca agtctttctt ctttgataaa aatatctctt ttagcatcta tattatttac
    16681 cacacgccaa acaagcatat aagaattttc aagcttattt tcagcatcta aaaatactaa
    16741 aatcctaaaa tgttttttaa attctaaaag tttgtcaaaa ctttgttcga ttttttcttt
    16801 tttatcaagc aaaatacaaa ctataggact tttactttct ttataaaatt gctttaaatt
    16861 taaaagttct accttagttt taaaaagttc tagtaatttt tcatcttcta aaatttcaag
    16921 ctcttcaact tgtatttctt cgcaagcatc aagtcctgct ttacccccaa aacaagaatt
    16981 aggtgaagca tgatctaatt gatcacaaat tccttctgaa attaaaattt tctttgtatt
    17041 aaaacgatct aacatataag gaattaaagc atcataatct ttcaaagaag gtgcattttt
    17101 atccacaaaa attgcatgct taacaaaact catttgccct actccccaaa atgcatgcat
    17161 aatttgttgc gcatgagcgg gatattttgc atcgattttt gctaagataa gattatgaaa
    17221 gaccccattt tcaggcatat tataatcaat taaatcaggt actgaagttt gaagcaaggg
    17281 taaaaaaatt ctttcggtac caagccccat gatcttatct tctaaaggag gctttcctac
    17341 aaccgttgct tgatagatcg catctttttt agcataaatt ttttctactt tcatcacagg
    17401 aaaaagttca gcaggagtgt aaaaacccgt atgatctcca aaaggacctt cgattttaaa
    17461 ctcttctaaa tccacataac cttcaataac cacatcacta tcataaggta caaaaatacc
    17521 attttcacaa ggagtaattt ttgcaggagt ttttttaata aaaccataaa gtaaaagttc
    17581 aaaaattccc ttaggtaaag gtgcttgaga acaccaaata taaagcggat ctccacctat
    17641 ggctatactt acaggcattt ttttaaaacc agcatttttg tattcgtgat aaaaatttgc
    17701 cccatcttta tgaatttgcc aatgcattaa aagttcattt ttatcactca tttgcaaacg
    17761 atacattcca agattatttt gagttttatc taaattttgt gtataaactt gccccatggt
    17821 aataaattta cccgcatcat cttcccaagt ttttagtatg ggaagttctt caagtgagtt
    17881 taaaatttca taatcataca aggctttatt ttttttcagt cttttaggag gaatattttt
    17941 aaaacttaac aaattcataa aaaaatccat ttttgcttta aaactcgtag gaatatgaag
    18001 cttggtgagt tttgaaattt cttcagccac ctcttcataa tcacgtccaa aagctaaatt
    18061 taaagccttt tcattgcaaa aagtattcat caaaacagga aatttatatt gtttatttaa
    18121 ttttttatct ataggatttt taaataataa agccttccct ttttctcctt ttttagcttc
    18181 tatataggct aaatgagcga tttcaagatc tacatctaca ggttcttcaa ttacccttaa
    18241 aagatcattt tcttttaaaa tttgaataaa ttctttcata tcatactctc agcttttttt
    18301 aaaagttctt tagcaccttt agcaataaac tccttagcca aactctctcc aaaaccttta
    18361 aaatcattct ttttaatcat tctcttatct tttaaaattt cacttccatc gggtagtcca
    18421 agtaccgcac gcacacaaat ttcatctccc aagagctctg cgttaatacc tataggaact
    18481 tgacaacctc cttctaaagt agcaataaat tctctttcaa tgcttgtttc aatcaaagca
    18541 ttttcatcat ttaaacattt taaaagttct aaaatttttt catcatttat gctttctata
    18601 cctaaagctc cttgagaagc cgcaggaata agctcatctt tgctaaattc ataaacaaaa
    18661 ttcacttgct tatctaagtt taagcgttta attcccgcca ttgccaaaat aatcgcatca
    18721 aaatcattat tttttaattt ctctatacga gaattgacat taccacgcaa agaaataata
    18781 tctaaatcag gtcttaataa taaaagctgc atcttgcgtc taagactagt agtgcctatt
    18841 tttgcacctt ttggtaaaga aagaaaatct ttataatttt gacttagcat agcatcattg
    18901 ctttgctctc ttttgcttac cgctgccaaa actaaacctt gaggaaaaaa actaggcaca
    18961 tcttttaaac tatgcactgc taaatgtgct tcttttctta acatactttc ttcaagttct
    19021 tttgtaaaaa gtcctttacc accaattttt gccaaaggag aatccagcaa aacatcgcct
    19081 tttgttttaa aaccttctaa aagcacttca atttgatgtg tattttttaa aatttgggct
    19141 acatgctcac tttgccaaag agccaattga ctttttcttg ttgcgataat aagcttcatt
    19201 ttctatcctc tataatttca acatcaatga tttcttcatt agaattttga tactcttgct
    19261 tggcgtattg atattttgat ttagttatta atttcaaagc aataccaaag aaaaatacaa
    19321 aaatcccaaa aacacttgta ataatccctg gaaaaacaag taaaaaccct gcgataacaa
    19381 aagaaaattg tgttaacata tcctttaggc cacccatttg aaactcaagc atatttttcc
    19441 aaaaaattcc caataaaacc gcaccaaaaa tcatactcaa aagtataaaa aataaaaaat
    19501 taccaaaacc aaaaaaaact ataaaaagta cacttgcaat aatttcaagt acaaataaag
    19561 ggcttaaact taatttataa ttcataacac tttcttttta agaatttcca taagttcatc
    19621 agtttttata agttctttta ccaaaccttc tctttggata agctctattt cattattttc
    19681 taatccttta ccaataacta acgcataagg aaagcccata agttcaaaat cattcatttt
    19741 aaccccaaaa cgctcatttc tatcatcaag caatacttct aatccaagat tagttaaatc
    19801 cctataaagc ttattagcaa attctaaagc cttttcatct ttgagatttg aaacaataat
    19861 ttcaagcaca aaaggagcta aagttttatt ccaaatacat cctttttcat catgatttgc
    19921 ttcaatagct acagccaaca agcgtgaaac acctatgccg taacatccca tataaaaagg
    19981 ctggcttttg ccattttcat ctaagaaatt tgcattcatc gctttggaat atttttgtcc
    20041 tagcttaaaa atatgcccta cttctatacc tttactttgt tttaattttg ctccacattt
    20101 aacacagcaa tccccttctt taacttcaat caaatcttta aaacgatctt tatttaaatt
    20161 tacaacatca ataccgatta aatgataatc tttttcattc gcacccataa tcatttgctt
    20221 ttcgttttca agctcaaaat ctatataaaa atctatatct tttaatccca caaaacctat
    20281 aaaaccagct actaagccag ctttttccaa ttcttcttcg ctcgcatcga ctagttcaag
    20341 ggcactgcaa gcattttgag ccttaacctc ttgcaaatca tcacttcctc ttataaaaaa
    20401 cacaactaat ttgctttcat tttcataaat agcttttttt accactgctt taatcgtata
    20461 aaaagcattg attttaaaaa attgtgctaa agaatctata gttttaatat ttggagtgtg
    20521 aaatttactt gcataatttg cttcaggaca ctcatcttga caagtttttt tagctctttt
    20581 tgcagcttca acattagccg cataatcaca attttcacaa attaaaatat catcttcccc
    20641 attttttgcc aaaaccataa attccttaga accacttcca ccaatagccc cactatcagc
    20701 ttcaactgct ctaaaatcaa gccccattct ttgtaaaatt tgagaataag ttttatacat
    20761 aagctcaaac tcacgcccta aatcttcttc attagcatga aaactatatc catctttcat
    20821 tagaaattca cgacatctta aaagcccaaa tctaggcctt gcttcatcac gaaatttaag
    20881 tccaatttga tataagtgca aaggaagttg tttatagctt gtgattttgt tttttaccaa
    20941 agaaagcata gcttcttcat gtgttggacc taaaacaaat tcattttctt ttctgtcttt
    21001 aaaacgcaaa agttcttttc caaaaacatt ataacgccca ctttcttgcc acaaacttgc
    21061 aggagtgata aaactaagat ttacttcttg tgctccagcc ttatccattt cttctttaac
    21121 tatattttta atcttgtcta aaactctttt tcccaaaggc aagaaattat aaagtccgct
    21181 accaatttgt tctacaaaac ccgcacgcgt taaaaaaata tgactaggta aactcgcatc
    21241 ttttggcgct tcttttaaac ttggtgcata aaatttagta aatctcatca ttattctcca
    21301 tatcaaattc acatttatat tgatttaaac cttcaagatt attttgcaaa tcaaaaacat
    21361 aacgcatagc attaatcact gtatcgcttt gcattttacc ttgtaaatgt ttcaaattta
    21421 cagtaggcgt gtgtaaaaaa gccttaaaaa cttgatgaat caactttcta gcctcttctt
    21481 tatcagattt tttcaaatat ccttttttta acgcaatttc aagttgttta tctgcatatt
    21541 ctttagcttg caagcgtata gctttgataa taggcatcaa agccaaatcg tttaaatacc
    21601 taaaaaattc acttgtttca cgacctatta tcccataagc catacgagct tcttgttctc
    21661 ttagtgctaa atttttttga accacaattt caagatcatc tacagcaaaa acagatatat
    21721 tttcattttc attgatatca atatcccttg gaactgcaat atcaaaaaaa taccttttat
    21781 aagaaagttc ttctattaaa gaatttgtaa taatagcatt tggtgcattg gtagctgaga
    21841 aaaaaaactc gtattgattt aaatattttt ttaaattttc taaactatca tattcgctta
    21901 aaacaccaag tctctcacac aaatctttag ctttttgtaa atcacgattt aaaataatca
    21961 ccttagcacc cgcagcaatt aaatgttttg ccgcaagttc tcccatctct ccagctccaa
    22021 taacaacagc ttttttttgc gttaaatctg caagttcttt tgcttttgcc acggcaacgc
    22081 tagctacaga aatagaattt ttagaaattt gagtttcatt gcgtacctta gcagcacatt
    22141 taaaagcact atgtactgct cttgaaaggt gtactccaca aaaattattt tttacagcaa
    22201 aagcaaaggc atcttttaat tgtcctgcta tttgagtttc tccaaccacc aaactatcca
    22261 aagaacttgc tacagaaaaa agatggtgga ttgctccact atcttcaaaa atatcagctt
    22321 tttcaagtaa aatatcttta tcaacatcac aaagtaaagc caaagattta acaataaact
    22381 ccgcacaggc catttttaca aaagcaacaa tttcaacacg attgcaagta cttataacca
    22441 aacattcttc aatattttca tgagtgctaa tgatttttaa aaactcactt tttttagctt
    22501 cattggaaaa gcttaacttt tcccttaagg caatatctgt atttttatga gtaaaagata
    22561 tacaataata cattaaaatt ccctatctat catagcttta ataatatcat taagcttgtt
    22621 attatcatat ttttcaattg cttttctagc cttttttgca taagttttag cttctaaaat
    22681 agctttttct aaagcttttt gttcttcaaa tttagttttt agccattctt tttcattttc
    22741 atttaaatct tttttaaata aagtctgcaa atatatccta tcttgttctt gtaaattttc
    22801 ataaagataa atataaggca aggtagtttt accctcttta aaatcattca tagcaggttt
    22861 tccaagaatt ttttcatcac tcttaatatc taaaatatca tcaatcatct gaaaagcaag
    22921 tcctaaattt ttaccatatt ctgcaaaatc tttttcatat aatccagcca aaatagctcc
    22981 gcatctagca cttgcttcaa tcaaaacagc tgttttatta tagatcattt tcaaataagc
    23041 ttctttattg atattaaatt tctctcccaa atcaacatcc ataagttcgc ctatagcaag
    23101 ctttacaaca gcatctgaaa taatacttgc aaatctagca tccattttgc ttaattcata
    23161 aaaggctttt gaatacaaaa tatcgcccaa cataagagca ttttttgtac caaattcagc
    23221 attaacagat cttgctccac gccttaattc actctcatcg ataatatcat catgtaataa
    23281 actagcaaga tgtatcaatt ctatagctgc gcaaatttta aaagcaatct cactctcatc
    23341 tgcgatagct aataataatt tagagcgtaa tttctttcct ggttttacat ttgaaagcat
    23401 atttaaaata ggttcatagc caagttcttc taaaaactgt tttattaatt catctatttt
    23461 ttgcactatc ttttccttgt taattgctat tattattttc tttgcttgtt aatggtttta
    23521 cctgaggttc gttaaaatta atcataggaa caacctgatt attttgcggt ggattttgta
    23581 aagctttttt tctcggatct aaaaattcta ccattaagcg agattcctta tcttctatat
    23641 aaaccgtaaa agttgccaaa cctttattat aaccactaaa ttctaaaata agtcttgctc
    23701 tatcaatatg tggattagta taatcaggta ttaaagtttg agttacccaa tctaaatttc
    23761 ttcttaaact catcacaaat tgacgcggat atttgcgaaa tttcgaatgt acgatgatat
    23821 tagtattatc aaacaaagtc caataaaaat caaaattttg caccttatct tcatagccta
    23881 tttctttaat ctgcacacta actctctcat cttttttaag tataaattta taagtataat
    23941 caaaagttgg ttcagatgct aaaacattac taaaaataaa aaaaatacaa attaaacaag
    24001 ggcttatttt aaacaatttt agccttcgtg tcctaaaatt tttgcgccca attctatata
    24061 aatatcattt tgcctttctt ctataaaatc accatttact aatatgaaat tttttacatc
    24121 catttctgtt aaaccttgtt tttccaaaag ttccaccatg gcaatatgat cagcaaaaaa
    24181 ttcctcaaaa actttttcta aggctcctaa atttccattt tgtataattt ctataaattt
    24241 ttcttttgga gttttattaa acatttcatc aaaaaaatcc attaattttc cttgaaaata
    24301 taagtttttg attataaaat tttaatcgtt aaaagtagct aaattaaaat aattaaaatt
    24361 taaattttat ttgcaatgtg taaaatttta gaagttaaat tccgcatgat gcggaattta
    24421 ttatgaatat ggttttgctt gagtggcgta ttttacaccc agatcaaaag ctttagcatt
    24481 tgcatcacga gtttttgcag gaaccatatg aagcatagtt tcttttaaaa catctaaatc
    24541 tatacatttg ctcatataag cagcaattgc aagtgcaaca actgattgag tagccacatt
    24601 tcctacctca tctttagcta tggtaataat agggatttca aaaatttgcc attttttata
    24661 atcttcactt tcaggatgta ctaaatttgg ctctacaact ataatacctc cttcttttac
    24721 acccccacga aaacctttat aacccttatc tgcagtcgaa agcataaaat ctacttcccc
    24781 ttctacagca taaggaaata aaatttcttt atcatcaatg ataatatcca ccttagtagg
    24841 accgccacgc acttgtgaag tataagtaga agccttaaaa gcttgacgac cttctttaat
    24901 ggctgcttct gctaaaattt ctcctgcggt gataacacct tgtccgcctt caccgccaaa
    24961 tcttaattga tatttcattt taaagctcct aaatccacca ttcttttttc tttggctgca
    25021 cgacgtactt cttcataagc gtggcagtat tctggctgag aattatcttc atgtaaaatt
    25081 cctgttggaa atttatcttt tctttcttca aaatccatgc tttcaaattt agctttatcc
    25141 acaacgcgat ttttaatcca atcaagcata gctacagctt cgcccatttt gttttttctg
    25201 cctagattga tatgacaatt tgaaaaaaca tctacaaaac tataaccctt atgcgctaaa
    25261 gccttataaa ttaaattttc aagcttatta gcttcgatca cattacccct tgccacaaaa
    25321 gaagctcctg cagctttagt taattcacac gcatcaaaat tagggtcaat atttccaaat
    25381 tgagctgtta ctgtataaaa accttttgga gtggttgggc ttgtttggga attcgtaagt
    25441 ccatagataa agttattgat cacaatgtgg gttaaatcaa tatttctgcg acaaccatgt
    25501 atagtatgat ttccaccaat tgccaaagta tccccatctc cgcttactac aataacatgt
    25561 ttactaggat tggctagttt aatgcctgtt gcataagcta ttgctctacc atgagttgta
    25621 tgaactgtat tgcaatttac ataagaactc attctgccac tacaacctat acccgaaaca
    25681 agacaaacat catccatatt ccaaccaagt ttttctatcg cgcggataat acattttaaa
    25741 acaacaccat cgccacatcc ccaacaccat tgagtaggca ttttatctac tcttagatat
    25801 tcatcataat taaaagccat ttatatattc tcctttacct tagcaataat ttcacttgga
    25861 gtgataggac gaccatttgc acggtgcaaa ctaataaaat cgcgacgcga agttactctt
    25921 tcaatctctt caagatattg tcccatatta agctcgctta ccattacttt tttaaatttg
    25981 cttacaactt cagcgatttt tttctcagcc actggataaa gagtaatcgg acggaaaagc
    26041 cccactttaa tcccttgctc tcttaatctt tgtatagctt cttttgctga acgactcacg
    26101 cttccataag caatgattaa aaattcagca tcatcaagca tatactcttc ataagtacaa
    26161 atatcttctt gattgttttt tattttacct atgagtcttt ccatattttt tttcactata
    26221 actccatctt cagttggaaa acctatatct ccatgatgaa gtcctgtaac atgataacga
    26281 taacctgtaa agaaaggatt taaagttgca ggctcatttt ctcctgctgc ataaggttta
    26341 taatcctttt tatcgccttc aaatttttta cggttatata ctttaatatc ttttaaatca
    26401 ggtaaaaccg ctttaccatt catgtgccct acagtttcat ccataagtaa aaatactgga
    26461 gtcatatatt tttcagctaa attaaacgct ctaatggttt ctgtataagc ttcttcaaga
    26521 cttgcaggag caatagcaat acttgcaaaa tccccatgag ttggtgcttt agcttgaaac
    26581 aaatctcctt gtgctacacg agttggaaga cctgttgaag gaccacctct cataacattc
    26641 acaatcacaa gtggaatttc agcaataaat gcaagtccta tttgctctgc ttttaaagaa
    26701 attcctggac cgctacttgc agtcatggat tttactccac tcattgccgc accaatagcc
    26761 acgctaatac ctgaaatttc atcttccatt tgtataaaag ttccatcatt tgcaggaagc
    26821 atatggctta attcatgagc tatctcacta ctaggagtaa taggataacc tccaaaaaat
    26881 ttacatccac aatcaatcgc agctttggcg attaaaacat tacctgttgc tataacttct
    26941 ctcattattt ttcctatgct aattttttgt atttgttatt ttttacggct acagctctat
    27001 ctttagcctc agcagtaagt ttggcaaatt taaattcatc tctttttgcc accataatag
    27061 caaaatcagg gcaatgtgtc tcacactcgg tacagcctat acaggattca gggtgtacca
    27121 cctctatcat ttgtcctaaa accgcatgca catcatcgcg catagctaaa accccagcgg
    27181 ggcaatagct aacacaaata ttgcatgctt tacatctatg ctcatctacc caaacagggg
    27241 tatcttttgg agctgtcata ctcatgtttt ttcctttatt aacctaatat tttttgaatt
    27301 tcttcaccaa tcaaagccgg agaatccacc acatgaattc catagctttt taaagcttct
    27361 tttttagctg cagcgctttc atcagcactt cctactatgg cacctgcatg ccccattctt
    27421 ttgcctttag gagcagttgc acctgcaatg aatgctacca caggtttgct aatattttct
    27481 ttaataaatt tagccgcttc cacttccaaa ctaccaccaa tttcacctat cattacaata
    27541 gctttagttt catcatcttt ttggaattca cttaaaagtt ctttataagc aagacctatg
    27601 ataggatcac caccaattcc tactgcagta gaaattccat aaccaccttg aactacctga
    27661 ttagcagctt cataagttaa agttccactt tttgaaataa gccccacgca acctttttta
    27721 aaaataaaac ctggcataat acctaactta cattcttcag aagtgataat acctggacaa
    27781 tttggtccaa tgattttcat acccttttta ttagcatatt gcttagcaaa catcatatcc
    27841 tttacaggcg tatgctcggt gattacaact gcaagcttaa tacccgcatc agctgcttca
    27901 atcacgctat cacccacagc aaaagcaggg acaaagatca agctcacatc agcctttgtt
    27961 gctttaaccg catctgcaac ggtatcaaaa actggtttac ctaaatgagt ttgtccgcct
    28021 ttatgagggg tgacacctcc aactatattt gtaccataag ccatgcattg ctcagcgtga
    28081 aaagttgctt ctttacctgt aaaaccttga actattactt ttgtattttt attaaccaat
    28141 atactcattt tccatcctta tcctactaaa ctttttacaa gctctgcacc gtttttaaga
    28201 ttggttgctg ctttgatatt tttaagattt gaattatcta aaattgtctt tgcttctgct
    28261 gcgttagtgc catcaagacg cactacaatt ggaatattta cctcaacatt cttagtagct
    28321 tctaaaattc catttgctat cctatcacaa cgaacaatac caccaaagat attgataaat
    28381 ataactttta catttttatc tcttaaaata atttcaaaag cctttgcaac agtttctgga
    28441 gaagctcccc cacctacatc taagaaattt gcaggttttg caccactata attaataata
    28501 tccatagttg ccattgctag acccgcacca tttaccatac aagctacatc tccatctaat
    28561 ttcacatagc ttaagccaaa ttcagccgct tctctttcag caggattttc ttcagtagta
    28621 tctctaagtt cagcaatttc aggatgacga taaagcgcac tatcatcaaa actgcatttt
    28681 gcatcaaggg cataaaaatc cccttctgca gttttaatta aaggattaat ttcaagcata
    28741 ttcatatctt tatccatgta aagcttataa agtttagcta tcatagaaat gagttttttg
    28801 ccttcatctt tatcaagtcc caaaactctc gctacttcaa gtccatgaaa cattttaaat
    28861 ccaatttgtg gatcaatacc tacttttgca attttttcag gactttcttt ggctactttt
    28921 tctatatcca tccctccttc acttgaagcg ataatggtaa tttgctctgc cattctatta
    28981 aacaaaatag ccaaataata ctcttttact atattagcac cactttctat ataaagtttt
    29041 tgcacaagtt tgccttcagg tcctgtttga tgagttacta aattcattcc taaaatttta
    29101 cttgcataat cttttacctc atctaaattc ttagcgattt taacaccacc accaagacca
    29161 cggcctcctg catgaatttg agctttaact gcccaaacac taccgcctaa ttctttagca
    29221 ttagccacag cttcatctac gctaaatgca acttttccct ttaaggtagg gatgccattg
    29281 tctacaaaaa ttgcttttgc ttgatactca tgtatgttca tttattctcc tttatattga
    29341 tatttgatta aagatttttc taatttgtct ttttcttgca aactaagatc cattttcatg
    29401 atttcaatca caccttcaag tcctaatctt gccataactc ccaaggcttt gttttgcact
    29461 ccaaattctc catgtaaaat cacactcata ggtaaaaact cgccacttct tatagactca
    29521 agcattctta tacaagcact agcaggggct aaataagctg aagttttaag atgtttgatt
    29581 actttagctc cacctgtttt aacttcattt tctaaatcct caaattcttc ttcatttaaa
    29641 aattcgctta tatttttatt tttaacactt gcgtaagatt ttaccaaaac catatcatca
    29701 ttatgaaaac caataagtct tgtatccact cttgacattt tgacattaag ttttttggca
    29761 agttcatact taaatcttgc attgtctaaa acacccgcca tggctataat tttctttgat
    29821 gaaaaaatcc cgctttcata aagagtatta agtagaaaat ccacaggatt agttaaaata
    29881 ataaaaagcg gatcttctgt aaaatcttta atttttttag cacaatcaag cataatgctt
    29941 gtatttaact gaagcaattc ttctctactt tgcccatctt ttctagcaaa acctgcacta
    30001 aaaagcacta tatctgaatt tttggtatga gtataatctt tagtgcaaag taaatctata
    30061 tttaaattta aagcagctat gctttgagta agctctagtt cttttgcgta aagcaaatcc
    30121 tcgttaatat ctactaaaac aatttcattt gctatttctc ttaaaatcaa agcataagct
    30181 acgcttgaac ctacattgcc agcccctata acagtgattt tcatctttgt cctatttttt
    30241 ctaaaatagc gttaaaagtt gcacttggac gcataatttt atttgctttt tcatcatcaa
    30301 atttataata cccacccaaa tccactttca caccttgtgc atcgttaaat tcggctctga
    30361 ttttttcttc attagaagaa agctctaggg caatatcttt aaaaaagctt tgaagctcca
    30421 tatcacttgc ctgtcttgct aaatgatttg caaaatacat tgctaaataa aaatgacttg
    30481 ttctattatc atcttctttg acttttcttg atggagcttt attattttca agccattcgc
    30541 ctatagcctc atcaagacat tctgctaaaa ccttagcttt atgattgcca cacttatttg
    30601 cataaaattc caaacttgct tgcaaagcca aaaattcacc caaactatcc caacgcagat
    30661 gattttcttc gactaattgt tctacttgtt taggtgctga accccctgct cctgtttcaa
    30721 acatagctcc accatttaac ataggcacaa cagaaagcat ttttgcactt gttccaagct
    30781 ctaaaatagg aaaaagatcg gttaaataat cccttaaaac attacccgtg atagaaataa
    30841 catctttacc ttctcggatt aactctaaac ttcttaaaca agcttctttt ggagttaaaa
    30901 tggctacatt tttacccttt tcttttaaac gattttgtac caaagttatc atgattttat
    30961 tactagctct tttgctatct aaccaaaaaa tagcttcggc tccactaagt tctgatcttt
    31021 ctatacctaa atcaatccaa tttaacactg catcaaattt agcctgatta gctctataaa
    31081 tatcaccttt tctaacctta tgttctaata aaactttacc gttagaaact attttaaaag
    31141 ttccttcttc tttagccaca aaggttttat cgtgcgatcc atattcttga gcttttttag
    31201 ccattaaacc tacattagat acactgccaa gttttgaagg atttaaagta ccatttttat
    31261 gcaaatcttc aataactgcc tcataaatag ttgcgtaagt ttgatcagga attacagcat
    31321 ttgtgtcctt ttccttacct tccttatccc acaatcttgc gccattttta agcattgcag
    31381 gcatagaagc atcaacgata acatcgcttg gaacatgaag atttgtaatg cctttatctg
    31441 aatttaccat agaaatatct gcagatttag ctaaaatttc attgtatttt tttaaaattt
    31501 catctttttt gcttgaattt tcgatcttac ttaaaagctc acttaaacca ttatttggat
    31561 taatgcctaa tttttcaaat tcatcttgaa attcgataaa taattcttta aaaaatactt
    31621 ttaccgcata accaaaaagt ataggatcac ttactttcat cattgtagct tttaaatgca
    31681 aagaaaaaag cacatcatca tctttgcttg ctttaatttc ttttgcataa aattcctgaa
    31741 gtttttgcac atccataaaa gtagcgtcta aaatttcatt tttttcaagt tttaagccct
    31801 cttttaaaat ttctttttta ccatcaacgc ttgtaaattc tatattagcc acacaatctt
    31861 gatcgattaa aaccgctttt tcattagaga aaaaatcccc ttctttcata taagaaacac
    31921 gagtttttga gtttggatta aactcaacca cacgataagg attgtttttt gcataatctt
    31981 ttaccgcttt tgttgaacga cgatctgaat ttccttgtct taatacagga ttaaccgctg
    32041 aacctaaaac tttttgatat tttgttttaa tttgcaattc ttcatcattt tttggctcat
    32101 ctgggtaatt tggtaacatg taacccttat cttgcaattc tttaatcgcc gccttaagct
    32161 gaggaataga agctgaaata tttggggttt taataagatt tgcatccgat cttttgacaa
    32221 gctcacctaa aagttctaaa gcatcttcac atctttgttc ctcttttaaa tactcactaa
    32281 aagtagctaa aatccttcca gacaaagaaa tatccgaggt ttttactcct atatgtgccc
    32341 tacttaaaaa agctttcact ataggcaaaa acgaataagt cgcaagagct ggagactcat
    32401 ctgttaaggt ataagtaatt tgcattttta gtcctttaaa atacttattt ttattttcat
    32461 ttttaagtat attacaaata aaaaaaaatg caagagtaag tttaaagttt gttttagttt
    32521 tcaaacaaac tttaaatatt tttaattaag taaattagca ggaagttgta tgatattttt
    32581 aataagatta aaaggggttt ttagagtatc tgttaaaatt tcggtatgaa atttagggtc
    32641 atctatactt ccatctattt ttaagtttgt gctaatttct tgatttttac ctaaaattac
    32701 ataatttaaa attggaacct tggatatagc ttctgaagct gattttaaag ttttaagctc
    32761 taaactaaaa tccactgtat ttaatcttaa atttgctgat cctaaaccat atatatctac
    32821 actatcacca tttaaattaa tagccgaaac acttaaaaga tctttttttc tattaaaaat
    32881 aatctttcca tcatgtaagc ttaaaccttt ttgattaaaa gttggagatt taaacatcaa
    32941 taaacttggt acagtatcga taaaggaaat aagctgattt atacctttta aatccttcac
    33001 ataagtattt ttaaaatcga tctgtccatc aaaatactcc aatccacttc cttttatact
    33061 taagttaaac actccatctt gaacagcttg tttttgtaaa aactcattta aataattatc
    33121 atcaatattg ctaacgttta aatttaaatc attagaagaa taataaagat caaattttgc
    33181 atttcctcta gaacctttaa gatctaaagc attgcctttt aaatcagctt ctactctatc
    33241 aaaagccaaa gttttattag aatctgccaa aattaaagct acatttgctc caccaaaact
    33301 aatattttgg gtattagtag caatatcaaa tgttgaattt gaagagttgg aatgttttct
    33361 ataaatataa cttaaatttt ttaaatgaat ttctttatta tcagaactta ttttagcact
    33421 tgctgtatca ctttgagtat gaatttccat aatgccctta ttttttacaa tatcaaagct
    33481 atcattttca taaggagttt gaccgttgat aagtaaatta tttttaaaat aagcatcatt
    33541 aacacttgca ttaaaatctt caaaatttaa agttttataa taaacatttt tagcatcgat
    33601 aaacccaagc tttttaagta atggagaaaa tgaaaataaa atcttaggat tattaagatt
    33661 agcctcaagt ccatctttaa aatttaaaat caaattccac tgaggaatgc taatgttaac
    33721 attttgcgaa taatctaatt ttacttctac attttgattt tttaaatcta aaagctctcc
    33781 attgtcaaaa taaagccttg aaatctgagt attgaaattt ccttgctgtt tttgtaagtc
    33841 aaatttagca ttaaaatcag cttctaaaaa gccattttta acactggcat tttctatatt
    33901 taaatcattt tgatttaatt ttacaaatgc ttttataata ttaaaatcag ccaaagaaat
    33961 actagcattc tctaaagcta aaataccact ataagaaatt tcacccttat catgaaaatc
    34021 aattttaagc tccaaatcac ttttaatttt tccgcttttt tgataaaaag gtagtgaaaa
    34081 atgataatcc tctaaagctt tagcaagttt ttcgtcaaat tttagattat cagacttaat
    34141 gcgcaaataa atcccaactt ttttttcatc aaacaaatca tatagataaa ccttactaga
    34201 acttaaatca gcaccattat agaaagcttt attaaagaca aaatcaagct tttgtttgtt
    34261 taaatttaaa tcgagttttg gaatttcaat agcattcatt ttatcatcca aacgaacttt
    34321 gacattatta acataacctg atgcgctaat attgtctaaa taataattat ctttagtaaa
    34381 atctataaag ccctgcaaat aatctaaatg ataaaattct cccttagccc tatatgctac
    34441 ccaaagattt aaactctgcg gaagttctat tcttttatta actcttttaa aaatttccgt
    34501 aatatttcta atgtttaaat cttctatttt ataagctaaa tttttatctt tgtaagagat
    34561 gcttgcgtta aagtcaagca attctccact tgctctacct tgaaaataat aaaactcgct
    34621 cttagtattg atacttaaat ttccatcaat acttaaatca taatctttta ataaaagttt
    34681 tttaatatca gctataagtt ctttattttg acgctgtaat gttaatttta aaaacaataa
    34741 atcattatct ataaaaaatt cattatcttt aaataaaata cgcacatgat tatcttttat
    34801 atttaaattt tgtatatcaa tctctttaac aaaa
//
LOCUS       DAQSLY010000005        30871 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.005, whole genome shotgun sequence.
ACCESSION   DAQSLY010000005 DAQSLY010000000
VERSION     DAQSLY010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30871
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.005"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..800)
                     /locus_tag="R2H98_000155"
     CDS             complement(<1..800)
                     /locus_tag="R2H98_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEE9023086.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNIGVLHSSSDFIMFLDSDDFLTPGACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVLNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKNFEKVKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYKDKKKSNEIIKRLSKEFLLDEFHQKLFEVLEREEKSLC"
     gene            859..1818
                     /gene="waaF"
                     /locus_tag="R2H98_000156"
     CDS             859..1818
                     /gene="waaF"
                     /locus_tag="R2H98_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEE9023087.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR"
     gene            complement(1799..2359)
                     /gene="gmhA"
                     /locus_tag="R2H98_000157"
     CDS             complement(1799..2359)
                     /gene="gmhA"
                     /locus_tag="R2H98_000157"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEE9023088.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDYNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2356..3741)
                     /gene="rfaE1"
                     /locus_tag="R2H98_000158"
     CDS             complement(2356..3741)
                     /gene="rfaE1"
                     /locus_tag="R2H98_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEE9023089.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKERKTPFKNR
                     IMAHNQQVLRLDEEDTSEILLENELIVLFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEVGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANGIEIF
                     KACEFANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDENTPLELISFLKPDILVKGADYKDKLVVGSNLVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3734..4687)
                     /gene="rfaD"
                     /locus_tag="R2H98_000159"
     CDS             complement(3734..4687)
                     /gene="rfaD"
                     /locus_tag="R2H98_000159"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEE9023090.1"
                     /translation="MRVTITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKDKTASMVLQFGHQILAGKNPRLFERSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(4688..5206)
                     /gene="gmhB"
                     /locus_tag="R2H98_000160"
     CDS             complement(4688..5206)
                     /gene="gmhB"
                     /locus_tag="R2H98_000160"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEE9023091.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNANIGTLILVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            5330..5632
                     /locus_tag="R2H98_000161"
     CDS             5330..5632
                     /locus_tag="R2H98_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEE9023092.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5655..5861)
                     /gene="ccoS"
                     /locus_tag="R2H98_000162"
     CDS             complement(5655..5861)
                     /gene="ccoS"
                     /locus_tag="R2H98_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEE9023093.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(5858..8215)
                     /locus_tag="R2H98_000163"
     CDS             complement(5858..8215)
                     /locus_tag="R2H98_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEE9023094.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCKSVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFNGKEFAPKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIVLYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8324..9622
                     /gene="rho"
                     /locus_tag="R2H98_000164"
     CDS             8324..9622
                     /gene="rho"
                     /locus_tag="R2H98_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEE9023095.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9626..11155
                     /locus_tag="R2H98_000165"
     CDS             9626..11155
                     /locus_tag="R2H98_000165"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEE9023096.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQAIKQENTTNIIPRITPSPIIPHLEKKTEKNAYEILLDSIYDRDFDLA
                     ECFKQSTNFISFENNTLNINSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKVL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(11152..11376)
                     /locus_tag="R2H98_000166"
     CDS             complement(11152..11376)
                     /locus_tag="R2H98_000166"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEE9023097.1"
                     /translation="MFKARNLDAQSFHNAKIFWDYFFNLCILWFFAFQVVVAEWFGMW
                     MSKVWKGLPDTTRLVTYMFLALIFISLKND"
     gene            complement(11491..11670)
                     /locus_tag="R2H98_000167"
     CDS             complement(11491..11670)
                     /locus_tag="R2H98_000167"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEE9023098.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDIKPDLFR"
     gene            complement(11742..13841)
                     /gene="copA"
                     /locus_tag="R2H98_000168"
     CDS             complement(11742..13841)
                     /gene="copA"
                     /locus_tag="R2H98_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEE9023099.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLKDQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAVLAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(13841..14035)
                     /locus_tag="R2H98_000169"
     CDS             complement(13841..14035)
                     /locus_tag="R2H98_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEE9023100.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(14025..14975)
                     /gene="czcD"
                     /locus_tag="R2H98_000170"
     CDS             complement(14025..14975)
                     /gene="czcD"
                     /locus_tag="R2H98_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEE9023101.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIMGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(15051..15314)
                     /locus_tag="R2H98_000171"
     CDS             complement(15051..15314)
                     /locus_tag="R2H98_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEE9023102.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(15385..15879)
                     /locus_tag="R2H98_000172"
     CDS             complement(15385..15879)
                     /locus_tag="R2H98_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEE9023103.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(15876..16652)
                     /locus_tag="R2H98_000173"
     CDS             complement(15876..16652)
                     /locus_tag="R2H98_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEE9023104.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KVKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            16719..17645
                     /locus_tag="R2H98_000174"
     CDS             16719..17645
                     /locus_tag="R2H98_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEE9023105.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASILGQNLLDFYKQRLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKNGVEK
                     VFELKFNEKEKTKLENSKQQIKNAIQSVKDKI"
     gene            complement(17642..18244)
                     /locus_tag="R2H98_000175"
     CDS             complement(17642..18244)
                     /locus_tag="R2H98_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEE9023106.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGDLDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFED
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVRMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(18325..18552)
                     /locus_tag="R2H98_000176"
     CDS             complement(18325..18552)
                     /locus_tag="R2H98_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023107.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(18563..20011)
                     /locus_tag="R2H98_000177"
     CDS             complement(18563..20011)
                     /locus_tag="R2H98_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEE9023108.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAQI
                     RKEREVQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGTPYDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATVGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLNNGPIALPGAGSGATTILDDDGVVNLGDLTIANLHFENY
                     KAFGTNFNYFLSLGYSHGNNSQLSPTLSGILQTQGYNGKFNEEDGYAVHVGGRYDFTK
                     ALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNI
                     QNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(20175..20657)
                     /locus_tag="R2H98_000178"
     CDS             complement(20175..20657)
                     /locus_tag="R2H98_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEE9023109.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGIGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(20667..21374)
                     /locus_tag="R2H98_000179"
     CDS             complement(20667..21374)
                     /locus_tag="R2H98_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEE9023110.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            21479..21820
                     /locus_tag="R2H98_000180"
     CDS             21479..21820
                     /locus_tag="R2H98_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEE9023111.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQVLGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            21820..22128
                     /locus_tag="R2H98_000181"
     CDS             21820..22128
                     /locus_tag="R2H98_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEE9023112.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(22146..23738)
                     /locus_tag="R2H98_000182"
     CDS             complement(22146..23738)
                     /locus_tag="R2H98_000182"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEE9023113.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLL
                     GLSILLSVKESILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSQENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVNEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(23750..23989)
                     /locus_tag="R2H98_000183"
     CDS             complement(23750..23989)
                     /locus_tag="R2H98_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEE9023114.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(23991..24614)
                     /gene="gmk"
                     /locus_tag="R2H98_000184"
     CDS             complement(23991..24614)
                     /gene="gmk"
                     /locus_tag="R2H98_000184"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEE9023115.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(24611..26254)
                     /locus_tag="R2H98_000185"
     CDS             complement(24611..26254)
                     /locus_tag="R2H98_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEE9023116.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLEHDNLEQETIKEQTQEDTQTDLDLTLEDSESEKEDLSQEHTALDTEPSLD
                     ELDDKNDEDLEIKEDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNANKTLETQNL
                     EHDNLEQETIKEQTQEDTQTDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDE
                     DLEDNKELQANISDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESEENLEEFAP
                     VVEEDVQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDK
                     ELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVN
                     ELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
     gene            complement(26311..27078)
                     /gene="fliR"
                     /locus_tag="R2H98_000186"
     CDS             complement(26311..27078)
                     /gene="fliR"
                     /locus_tag="R2H98_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEE9023117.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(27065..27700)
                     /locus_tag="R2H98_000187"
     CDS             complement(27065..27700)
                     /locus_tag="R2H98_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023118.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSNLYQMDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(27713..28786)
                     /locus_tag="R2H98_000188"
     CDS             complement(27713..28786)
                     /locus_tag="R2H98_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEE9023119.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVLDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(28786..29577)
                     /gene="rpsB"
                     /locus_tag="R2H98_000189"
     CDS             complement(28786..29577)
                     /gene="rpsB"
                     /locus_tag="R2H98_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEE9023120.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(29693..30856)
                     /locus_tag="R2H98_000190"
                     /pseudo
     CDS             complement(29693..30856)
                     /locus_tag="R2H98_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
BASE COUNT        10647 a         5713 c         3881 g        10630 t
ORIGIN      
        1 atacataaac tcttttcctc tctctccaaa acttcaaata atttctgatg aaattcatca
       61 agtaaaaact ctttggatag tctttttatg atttcattac ttttcttttt atctttataa
      121 ttttgattta aaatttcttt atttttattc tcatatcttc catttggatt aaattcataa
      181 tgataaatac aagttttaaa aacggctatt ttctcacaaa acataaaata aacataacaa
      241 aaaagcacat cttcaccgta actcaaacgc tcatcgattt taaccttttc aaaatttttt
      301 aagatgatat cttttctaaa acacttcgcc caaaccgacc agcaaaaatg cctttgtttg
      361 cttaagaatt ctaaaaattc cttttgattc aaaacttcat cttgtttaaa acgataaaat
      421 tgtttggttt ttaccctatg tacaaaggca tcaaaacaaa gcaaatcaaa accttttttc
      481 atctctttaa acgctatttc acaagcacca ggtgtcaaaa aatcatcact atctaaaaac
      541 attataaaat cagaactaga atgcaaaact cctatatttc tacttgcaaa agtgcctaaa
      601 ttttcttcat tttgaaagat ttttattctt ggatcttttt tagcaaattc taaaactata
      661 tttaaactat tatctttact tttatcatcg ataatcaaaa tttcaatatc ttttaaagtc
      721 tgatttatac aactttgtaa agcccttgaa ataaaatcac aagaattaaa aagcgggatt
      781 atgatcgaaa gttgtggcat atttttccta aattttgtta aaataataaa aacaattcta
      841 tcaaagttta ggaaatttat gaaaattttt atacatcttc ccacttggct gggcgatgca
      901 gtgatggctt cacctgcttt atacgctata aaagaacatt ttaaaaatgc ccaatttatc
      961 ctttatggct ctttagtttc cacagcactt tttaaagaat ttcctaattc taaaatcatc
     1021 atagaaaata aacaatctcg ctataaacaa gccctatctt tacgcaaaga acttggtaag
     1081 atcgatctta gctttgcttt tagatctgcg ttttcttcta agattatctt gcatatcctt
     1141 aaaacaaaac aaagatattt ttttgacaaa aacaagcaca aagaagaaca tcaagtttta
     1201 aaataccttt attttataga aaactcactt agtataaaag ctcattctaa agacttaaag
     1261 cttcccttta agctaaaact tcaagaccct cttgtcttaa aaaatggtaa aaaaattcta
     1321 ggactcaatc ctggcgcaag ctttggaagt gcaaaaagat gggatgcgag ttattttgct
     1381 aaagtggctt taaatttcag ccaaagtcat gaaattttaa tctttggcgc aggaaaatcc
     1441 gaacaagaac tttgtaatga aatttatcaa attttaaaag aacaaaacat aaaagtaaaa
     1501 aatctttgca acaaaaccac catcaaaacc ctttgtcaaa atatcgcttt ttgcgatctt
     1561 ttcatcacaa atgacagtgg tcctatgcac ataagtgcgg tttataaggt aaaaaccgta
     1621 gctatttttg gccctacgaa atttactcaa acttcacctt ggcaaaatga aaacgcaata
     1681 ttagtgcatt tagatctagc ttgtatgcct tgtatgcaaa aaacctgccc tttaaaacac
     1741 cacaaatgca tgaaagatct aaagcctcaa agggttatag aagaggctag aaatttactt
     1801 aaaaactctc atcgatgatc tgacaaagtg tgtgtatgat taaaatgtgc atttcttgaa
     1861 ttctagccgt atcatcactt ggcacaacaa gattataatc acaaagctta ttcatcattc
     1921 caccaccctt tccgctaagc cctaaacaaa gcatattaag ctcttttgct ttttttaaag
     1981 cttctaaaac attagggctt tttccgctcg ttgaaatacc gattaaaaca tcattttcat
     2041 ttcctaaagc ttctacttgt cttgaaaaaa caaactcaaa accatagtca tttcctatag
     2101 cactaagcgc tgaagtatct gttgtaagcg ctatgcctgc taaagctttg cgttcttttt
     2161 tataacgccc actaagttca gctgcaaaat gctgtgcatc agctgcactt ccaccatttc
     2221 cgcaaattaa aattttacca ccttttttaa gacattcaca taaaagctca cctactttag
     2281 cgatttgtcc ttttaaaatt tcactttctt gaacgatttt ttgatgttct tgccattctt
     2341 tttctactaa atttatcatt ttttatcctt aatcttttct ataatcttgc tcgtactaaa
     2401 tccttcttca aaatcgatta attcaactct tgaaaccaaa tttgaaccta caacaagttt
     2461 atctttataa tcagctcctt taaccaaaat atcaggcttt aaaaagctta taagttctaa
     2521 aggtgtgttt tcatcaaaaa tcactacaaa atctacaaaa taaaaagctg ccaacataca
     2581 agctctttga aactctgaat ttacaggacg actctcgcct ttgagtcttt tcacactcgc
     2641 atctgagttt aagcccacaa tcaaaacatc gcctaatctt ttagctttct caagatattt
     2701 tatatgtcca aaatgcacga tatcaaaaca accatttgta aaaacaatct ttttatcatt
     2761 ttgttttaaa agcgttaaaa gctcttcttt atttttgatc tttttctcaa aactcatact
     2821 tttaaaactt ctaatctcat caaaactcac actcacacta cctattttac ttaccacaac
     2881 ggctgcagct tcattggcaa attcacaagc tttaaaaatt tcaatcccat ttgccaaaca
     2941 aaaagccaaa acggcaatca cactatcacc cgctcctgtt acatcataaa cttctaaggc
     3001 tttagcaggt gcgattttta aaccctcatc aaaaagcgca atccccactt ctgaaagagt
     3061 gatgatagaa taacgcaaag aaaaatcttc ttttaatttt ttaatccctt tttctaaatt
     3121 ttcaccctct aaattttcaa atttcaaagc ttctaaagct tcttttttat taggcgtgag
     3181 taaggttgca ccgctatatt tactaaaatc actgccttta ggatcaacta aaacaggaat
     3241 atttaaagcc ttagcctttt ttatcacagc cttgcaaacc ttaggcgtta aaataccctt
     3301 agcataatcg cttaaaacca cagctttaaa atctttaatc ttttcatcaa ataaaactat
     3361 aagttcattt tcaagcaaaa tctcacttgt atcttcttca tctagtctta aaacctgctg
     3421 attgtgtgcc ataatgcgat ttttaaaagg ggttttacgt tctttttgga tcaaaaattc
     3481 tccttttaaa ttttcttgta aaaatttccc actctcatca tcacccacaa caccaagcgc
     3541 aaaaacatca gcccctaaac tttttaaatt tgcataaaca ttcgcagccc cgcctaatct
     3601 tttatcttcc ttaagagttt tagctaccaa aacaggggct tcaggactga tacgcgaaca
     3661 atcacaccaa gtataattat ccaccataaa atcccctata atcaaaattt taggtttttg
     3721 ctggcttaaa aactcaagca tttacttcct tttcaaaaag tctttttatc tcatctaaat
     3781 aatctttaat cccctcttca agactaaatt ttggttgata atcccaagtt tgatctagtt
     3841 ttgcttcagt atggaattga taagatttta cataaggatt tgggatatat tcacaaggca
     3901 aatcagtctt taactctttt tgcaaaatat cgactatatc ttgaaaggtt cttgctttac
     3961 cactgcctac attataaacc ccgcattttg aatcaagggc gattaaattg gcattaataa
     4021 catctttaat ataagtaaaa tctctataaa tttgatcact tctttcaaac aagcgtggat
     4081 tttttcctgc taaaatttga tggccaaatt gtaaaaccat agaagcggtt ttgtctttat
     4141 aaaattcgcc ttttccataa acattaaaat atctaagtcc taccaaatga gctttatcgt
     4201 aatatttttt cgctaactta tccatcatca attttgaaaa agcataagga ttttttggtt
     4261 cttcatcctt acctacagtt tgtggacttt ttgcatcacc ataaaccgaa gctgaacttg
     4321 cataaataag ctttgcatta agatctatgc taagttctat aaaatcttta aaagtattta
     4381 aattggtttg caaaacctta gtttgatcaa aaaccgtagt gtctgaaatt gctgcttgat
     4441 gaaaaataat ctctggctta aaatcttcaa tcttttttaa aactttttca tcgttaatat
     4501 cgcctgcaaa aagttctcca tcaaattcaa gtaaattttt aaaatgtcca aaactttgta
     4561 aatttccatt ttcaaaagtc gcactgctac gcattttatc aatgattaaa atttcatgtt
     4621 tttcttgcaa atttaaagcc agttgcgaac ctataaatcc tgcaccacct gtgattgtta
     4681 ctctcattta aatgtccttt tctttaaaaa aactcaaaat ttcttttaaa tttttaaatt
     4741 gtctaaaaaa atcgccttct tttttttctt catttaccaa aatcaaagtg ccaatattag
     4801 catttaaccc tgcttgcata tcgcttagat tatctccgat aaaaatagaa tttttcatat
     4861 ctaaattaaa ctcatctttt gcttttaaaa gcattcctgc tttaggtttg cgacattcac
     4921 aaccttctaa atgcggacaa tgataaattt tatcaatttt tataccttgt ttagtaaatt
     4981 ctttaagcat ataatcacaa agcttaaaaa aatcactttc cttataatat cctcttgcaa
     5041 tgcctgattg atttgtcgct ataaaaagca aatatttttt agctaaaaaa tatctacaaa
     5101 gttcaaaaat tccatcacaa aattcaaaat cttctatttt atagacatat tttttatcta
     5161 tattaatcac accgtctcta tctaaaaata atgcttttgt tttcataaaa aacattataa
     5221 tatagctttt ttgaaaagaa aataaacatt atctttattt tcttaagatt tttataaaaa
     5281 taaagatata taatatctgg caatctaatt tttactgagg agaaatcaaa tgaaaaaatt
     5341 attagtagtt tctgctttgg catgtcttgg tgtttctgct tttgctgcag atggtgctac
     5401 actttttaaa aaatgtgcag tatgccatgg tgcaaatgct gacaaagttt acttaaacaa
     5461 agttccagct ttaaaaactc tttcttctgc tgaaagactt caatacatga aagaatattc
     5521 agaaggcaaa agaaatgctt atggtcaagg tgcgatcatg aaacttaacc ttaaaggttt
     5581 aactgaagaa gattttaaag ctattgaagc tcatattgaa actttaaaat aatttctaaa
     5641 aaaggctttc ctttttaaga aagccttttt ttatccaaag cttctttttt acgcctttct
     5701 aattctatag catcacgcaa agaatcctca tcatcattta aagtagtaaa tttataatca
     5761 tcatcaaatt gcttattttt aatcccccaa agcaaagttg ccaaaatgat aaaaaacgct
     5821 aagatagaaa ctcctatcat catcatgatt atactattca ttctttaatc cttaaagcat
     5881 ttaaaacgac tattatacta ctaaaagaca tagaaatagc agcaaataaa ggatttatca
     5941 tacccaaaaa agccaaaggt atggtgcaag cattataaaa caaagaaaaa gcaagatttt
     6001 gcttgataat tttaaaggtg tttttagata atttgatggc tttttttaaa gaaagcaagt
     6061 catttttcaa aagcaaaaca tcactacttt ctatagctag atcacttcct tctcttaaag
     6121 tcattgaaac acttgcgtat tttaaagcta gtgcatcatt taccccatca cctacaaata
     6181 aaactttgta atttttactt aaattttcta tagttttcat cttatcttca ggcaaacaag
     6241 aagcttgata attttgaatt tctaactttt tagcgatttt ttccactgct ttttgatgat
     6301 cgccactgag tatcattaat tctttctttt cttttttaag ataagcgata agctcttttg
     6361 caccttctct taaaacacta tcaaactcaa aaaaagctaa aattttacct tccttggcaa
     6421 aaataaaatg cgtattatca aattctttag ccacaatacc cttttcttgc aaaaatttag
     6481 aacttccgcc taaaagcaac ccttcattta actcagcact taaaccttta gcttgaatac
     6541 tcgaatgctt tttaaaatcc aaatttaaat ccttagctcc tttttgcttt aaatataaca
     6601 caatattttg agagatagga tgtttagaaa gttttacaaa attataaagc tcgtttaaat
     6661 caagcgcttt atctaaaaaa acctctttaa gttcaagctc tattttggtt aaaatacccg
     6721 ttttatcaaa taccacacaa tcacatttgc ttaaatcttc tatcacgcta gaacttttaa
     6781 ataaaatatg cttttttaaa gccctaccta aagccacaag attgctcact ggcgttgcta
     6841 aagccaaagc acaaggacaa gcgataatca aaactgcaat cgcattgact aaagaaattt
     6901 cgaaactctc ttctttataa aaaaaccaaa aagcaaaaca aataaaagcg atcaataaaa
     6961 ccgttctaga aaaataagcc aaaagactat tgaccaaact ttcaagtttt gcttttttag
     7021 aacttgcaag ttctaaaagc tggataattt gactgagttt tgaatccttg taaagctttg
     7081 ttgcttcata ctccacactt ccatcaagca ctatacaagc tgaaaaaatt tcatcttctt
     7141 tttgtatgag ttttggggta ttttctccat ttaaagaaga agtatccaca ctcatttcac
     7201 cacttttaca aatcccatcg attaaaattt tatctccagt tttaagcaaa attctatccc
     7261 ctaaacaaac cttttgaact tctttaggag caaattcttt accattgaaa actaaaactt
     7321 cattttgtaa aaaatcatta agcccatcta tggtatctaa agcacgcttt ttgctaaaca
     7381 tctcaagata tttacctata aaaacaaagc aaattatcat cgccacagag tcaaaataca
     7441 cttcccctac cctaaaaaac atggcccata aagaataaac ataagccaaa ctcgctccgc
     7501 taatcaccaa tacatccata tttaaactat gcatttttaa agttttaaaa gcacttttat
     7561 aaaaatgaga tcccgtataa aaaagcacag gagaacaaag gataaattca gcaaaattta
     7621 aaatatcctt agtgtcctta tccataccgc taaaaaatcc tgcgtatttt gccactgcta
     7681 tccacatgat attcatcaca caagctatag ccacaacaag cttagaataa aattcccttt
     7741 ttagtaaatc cgcttttttt gaagccttgc tcgcatcata agcactcgct ttatagccta
     7801 tgctttcaat aagtcttaaa atttgcacca aagaaatgct ttgctcatca aaaacaatgc
     7861 gtgctttatg gtttaaatga ttaatatcaa gttctaaaat tccttcttgt ttggttaaaa
     7921 ttttctcatt aagccacaca caagctgcac attctatacc gtgtatcatg agataaattt
     7981 cactaaatcc ttctttggtt ttagtgataa actcatcata atttttcatt tcattttgaa
     8041 aatttacagg gcttaaagtt tgatttccaa gcttttcata aaactcatct aatccacttt
     8101 catgtaaaat ttcccaaacg ctcttacaac ctttacaaca aaaaaattta cccttatact
     8161 ctatcatttg ggcttgttta taatcaagtt tgcaatgttc acatttcata atcattcttt
     8221 aaaaaaatat tttttataat tataaacaaa tttgacaaaa agtgcatttt tttattaaaa
     8281 tcacatttta caaaaattat tctgctaaat cttacgagga cttatggaaa aagaaaaaaa
     8341 acaacatcaa agaacccacg ttccagtgga aggttataaa atcgaagaat taaaattatt
     8401 agatttagaa aatctagtta aaatcgctaa tgaatgtgaa atcgaaaacc caagagaatt
     8461 tcgccgccaa gaacttattt ttgaaatttt aaaagcacaa acaaaaaaag gcggttttat
     8521 actttttaca gggattttag aaatttcttc cgaaggttat ggctttttaa gaggtatgga
     8581 ctctaatctt agcgatagtg ttaatgacgc ttatgtttca aattcacaaa ttaaaaaatt
     8641 tgctctgcgt gtaggcgata tcgttacagg acaagttaga gaaccaaaag atcaagaaaa
     8701 atactacgct cttttaaaaa tcgaagcgat caattatctg cctttgcaag aagccaaaga
     8761 aagacctttg tttgataact taacccctat ttttccaaca gaaaaaatca aactcgaata
     8821 cgatgcaatg aagcttacag gtcgtgtttt ggatcttttt actcctatag gaaaaggaca
     8881 acgcgggctt atcgttgctc caccacgcac aggtaaaaca gagcttatga aagaacttgc
     8941 tactgctatt gcaaaaaacc acccagaaat gcatttaatc gtacttttag tcgatgaaag
     9001 gcctgaagaa gttaccgata tgcaaagatg tgtaaaaggc gaagttttta gttctacttt
     9061 tgatttacct gcttataatc atgtgcgtgt agccgaactc gtgatagaaa aagccaaaag
     9121 aatggtagaa acaggcaaag atgttatcat cttacttgat agtatcacaa gactggcacg
     9181 tgcttataac accgcaactc caagcagtgg aaaagtccta agcggcggag tggatgctaa
     9241 tgccctacac aagccaaaac gcttctttgg tgcagctaga aatatagaaa atggaggctc
     9301 tttaaccata gttgctacag ctttaattga tacaggttca agaatggatg atgtgatttt
     9361 tgaagaattt aaaggcacag gaaatagcga aatagttctt gatagaaata tcgccgatag
     9421 aagaatttat cctgcgatta atatcatcaa atcaggaaca agaaaagaag aattgctcca
     9481 aggcgtagca aatcttcaaa aaatttgggc aatccgttca gcgatttctc aaatggatga
     9541 tgttgaagcg ttgaaatttt tatattctaa aatgcttaaa accaaagaca atgtagaact
     9601 tttatctata atgaacgagt agaaaatgct tcaagcttta gcgattaaat acagaccaaa
     9661 aacctttgat gaactcatag gacaaaagac agttagcgta agtttaaaat acgccctaaa
     9721 tcataatcgc ttagctcatg cttatctttt ttcaggactt agaggaagtg gaaaaacttc
     9781 aagtgctaga attttttctc gtgctttagt ttgcgaacaa ggaccaagtg atactccatg
     9841 tggcacttgc aaacactgtc ttgcagcact tgaaggcaaa cacatagaca ttatagaaat
     9901 ggatgctgca agcaaccgtg ggcttgaaga tatacaagcc ttaattgaac aaaccaaata
     9961 caccccttct atggcaagat ttaaaatttt catcattgat gaagtacata tgcttacccc
    10021 acaggctgca aatgcacttt taaaaacctt agaagaaccc ccaagttatg ttaaatttat
    10081 acttgcaacc actgatcctt taaaactccc agctaccgtg ctttcaagaa cgcaacattt
    10141 tcgctttaaa caaattccgc agagtgaaat tttaaatcat cttaaagaaa ttttacttaa
    10201 agaaaatgtt aaatttgaag aagaagcttt aaaatttata gcaagaagcg gcaatggatc
    10261 tttaagagat actttaacct tgcttgacca agctattatt ttttgtcaaa atgaaatcag
    10321 tattagtaaa attacagata tgttaggctt tttagatcct caaaaaatca aagcctttta
    10381 tcaggctatc ttaacaaaag acaaggaaaa agtttttgcg tatttagagg aattacaaga
    10441 ttatgaagcc tcaagcgtga ttgatgaaat gcttttttat ttaaaagaaa gtttttttgc
    10501 aaaaagtaca gaattttcta ctttaattta tgaaagattt ttccgtattt tatcaaaagc
    10561 taagaatatg ctttgcgatg atgatggctt tacgctttgt gttatggctt ttatgatgat
    10621 ggaagcaagt catttaaaag aaattgacgc acaaatccaa gcaatcaaac aagaaaatac
    10681 aacaaatatt atacctagga tcacaccttc tcctatcata cctcatcttg agaaaaaaac
    10741 agaaaaaaat gcttatgaaa tcttacttga tagtatttat gatagggatt ttgatcttgc
    10801 agaatgcttt aaacaaagta caaattttat tagttttgaa aacaatactt taaatataaa
    10861 ctcaaacgca caaggacaaa atcgcgatac actcaataaa ggttttaaac tcatacaaga
    10921 actttttaag gctaaatttg gggaaaatgc taaaattaat gtgcaaaaag tactaacaat
    10981 tgatgaaaat aagcttcaat ccttaactca agaattacca aacaatgaaa ataaaaacat
    11041 agatattcaa agttctatta atatgcttaa agaaggggcc aaaaaatttg acccacaaga
    11101 agatcttaaa gaggctctta aagattgttt tggagagcct agtatagaaa attaatcatt
    11161 tttaagagag atgaaaatca aagccaaaaa catataagtt accaatcttg tagtatcagg
    11221 taaacctttc caaaccttac tcatccacat tccaaaccat tctgcaacaa ctacttggaa
    11281 ggcaaaaaac cataaaatac acaagttaaa gaaataatcc caaaaaatct tagcattatg
    11341 aaagctttga gcatctaaat ttctagcttt aaacatatca taagcacctt ttttagagct
    11401 gttaaggcaa taaaagtttc aaaaagaata attgctatat agcctatatg ataaatcacg
    11461 ggagaagtaa tagccatata aactacagca ttacctaaat aaatcaggct ttatatccat
    11521 actcatcaca tgcgaaacaa attggaaatt agaattgtaa tctgtcacat ttccaaaaac
    11581 cactatacct gctaacgata caacggtaag caaaataata atttttgaaa atctaatcat
    11641 tttgcttatg caaaaacatt tttgttgcat ttatactctt ttaataatat attttagtaa
    11701 tattaattat atataatata ttattaataa aaattaaatt tttaaattct tttaagtctt
    11761 aaagaattaa gcactacagt aatagaacta aaacacattg caagtactgc tatatgagga
    11821 cttaaagaga taaaaggtat aaatcctgcc gcgataggaa tgcaaagtac attataaata
    11881 aaagcccaaa aaagatttag cttaataata ccgcgtgttt ttttagcaag tttaaaacat
    11941 ttaaaaatcg ctgataaatc atcttttatc aagataaaat ctcctgtttt tttagcaagt
    12001 tcatttgcct ttgaaaaact catactcaca cttgcagcag ataaagccgc cgcatcattg
    12061 atcccatctc ctacaaaaag agttttttta aatttttgaa tgatttgtag tttttcttca
    12121 ctcttaagct gagcgtgaaa ttcgtctatt tgtaattctt tggctatttt ttctacattt
    12181 tttacatgat cgccgcttaa aataaaagtt ttaagatttt gcttttttaa atttaacaca
    12241 agctctttgg ctccatcttt taaagcattg cttaacaaaa caccgcctaa acacttttta
    12301 ttcttagcaa aatacaccct aacatattct ttaaaagtat caaaaaagat atcactttct
    12361 tttgtgtcaa tttcattttc gtgcaaaaac tgtgcattgc ctacgagata attatcatta
    12421 tcttctttgt attttatacc agaacccaca atcactcttc cctcaccctt taaatcaaaa
    12481 aaatgatctt tatgtaaagc cttagctata ggatgagagc ttaaactttc aatttgacat
    12541 aatttatcaa aatcatcttt agaaagattg tgtttaaaaa tactcaaatt ttcctttgtt
    12601 aatgtacccg ttttatcaaa aaaagcatac ttaactaagg ctaatttttc taaagcagca
    12661 ggatttttaa taagaatgaa attttttgcc gcatttgcac ttgccacaac caaagctata
    12721 ggcgttgcaa gacctaaagc acaaggacaa gagatcaaaa gcacagcaca agagtgtaaa
    12781 aaagctgtat ttaaatctgc ttttagcacc caaaaaacaa aaactaaaaa agcaaaaaat
    12841 attatacccc ctacaaagta tttagaaatt tgatctgcta aatttgccaa aggacttttg
    12901 atacttcctg cttcaaaaac tagatttttg atttgttcta aagtactatc catggccttt
    12961 ttgtttgctt tgatccttaa agcaccattt aaaactactg ctcctgcttg aacttcatcg
    13021 ccttcttttt ttaaaacagg caaaaactcc ccatttaaaa aactcatatc aagctctgca
    13081 ctccctaaaa gcactactcc atctgcaaca atactttctc cttcttttac caaaagtaca
    13141 tcgccacttt tgacaaaaga acttgaaatt tctttgatac tttcatcttc aagcaaaatt
    13201 tttgtctttt ttgtgtctat attttctaaa attctttgat aatcttgtgc cttaaattta
    13261 gccttacttt caagatattt tcctaaaagc acaaaggaaa taatcatcat tgcaccacta
    13321 aaatacaaat cttcttcttt gaaaatttgc aaatacacca aaaaagaata cacaaaagca
    13381 ctcaaagtcc ccaaagctac aagggtattc atatctaaat ttttactttt aagtcctaaa
    13441 aaagcatgag aaaaaaagtc tctcccacaa taaaatatcc caaaaaaact caaagccatt
    13501 tggatatttt gagaaaaaga acttttaaca aacatttcaa aatacataat aatcacactc
    13561 aaaactatac ttaagagcaa attttttctt aattctaagt gtttttttgc cttgtatgcg
    13621 ttcaagcttt gttcatcttc taaaatttca aagcctaaat tttgaatttt tgcgatgata
    13681 tccttgcgtt tttcttgatc tttaagtaaa aaaaccccgc tagaattcac ataagaaaca
    13741 ctagcatctt taacaccatc aattttttta caagctcttt ctatagcgtt agaacaatta
    13801 acgcaagtca ttttgcctat ttttatacgc aattcttcca ttataaacgc tctacgatct
    13861 caaaacctaa atcttgaaat tcttttgtaa aatttgatac ttgattttct tctaaattta
    13921 aacttaaaat tttttgctcc aaatccactt ctatatttcc aaattcatct tcaagagaat
    13981 ttttgatcaa atttacacaa ttcatgcaat taacattttt tactttaaat ttcattttca
    14041 ctccttatag gttgtatggt aatgtgcccg atttcaaatt catgcaataa cttatgagat
    14101 aaatcctgag atagtttttc aaattccttt agattgcaaa ctcttacttt taaatgcata
    14161 gaggctacta gcattttatt agtgatttga gtaatatgca aatccactac ctcatccaca
    14221 ctaggattta aaagcaaaac ttgtcttact ttttctatat ccacaggaga actttcaagc
    14281 aagacattag cgctttgttt aagcaagata atcgcccatc ttaaaagcaa gattgataat
    14341 acaatagcta aaatcgtatc tatataaaca ataccgctaa aatacaccac gatcccaccc
    14401 ataataaccg ctaaagaacc caataaatca ctcatcatat gcaaaaaagc agacttcata
    14461 ttgacatttt ctaaatttgc acccttaaac atcatcaaag cattaatccc atttaccaaa
    14521 aagcctaaaa tagctacaat tatcatggtt ttagcgtcaa tttcttttgg attaataaat
    14581 ttttctatag cttcataaat gataaataaa gccgataaaa taatggttag agcattgata
    14641 aaagccacta aaacttcaag acgaaaatac ccaaaggtct tttgatgatc ttgccatttt
    14701 tctacagcta taatggctaa aaaactaaga gctaaggcaa aaacatcaga aaacatatgc
    14761 aaagtatcgc ttaaaagtgc taaagaattt gaaaggattg aataaataaa ttgcacaagc
    14821 atcatagaaa aagtcattaa aagagaaatt tttaaaatct ttttatccac actccttgca
    14881 tcagcatggg aatgatgatg ttcatgagaa tgttcttcgt gattatgatg acaagatttg
    14941 ttagctaaag gctcgtgtga taaaaattta tacatcttat atcctttttt gcttgacatt
    15001 ttaagatatt aagctaaaaa ggatataaat atttgttatt tttataaaaa ttaaaagtca
    15061 aaaagctcgc ctagccaact ttctttcttt ttctttttat aatagtcatt gtgctgatga
    15121 taagctgagt cattatatct tgactcttgt cttggagctt ggttaaaatt tgctgtatta
    15181 gggacactgc gttctatgat tttgtcaagt tctccacgat caagccaaac gccacgacac
    15241 tttggacaat aatcaatctc aactccactc ctatcactca taaccaaatc tacattacaa
    15301 actggacata acatacaata cctttttttt aaatttttga tttaaaatta taaaaagaaa
    15361 tattaaacaa atttacaaca agttttaatg tttttttgca tgtctagtca tcataaaact
    15421 ttgttcaaaa aatataagca aagtaacact cactcctata gctagagcca aagtcacaga
    15481 aacagttgta aaaaaataat caaaaaattg aaccaaaaat tcagacttag ccttcaaatc
    15541 atcactgcgt ataaaagaaa taagatacaa aattgcttta taagcataaa ttccaggtat
    15601 cataggaata agagcaggga aagcgataat ttcagcaggg gttttgataa tttttgctaa
    15661 agcaattcct aaacatccta tgcaaaatga agcaacaaaa gttgcaattg ctaaagtttg
    15721 aaaatgaaaa tattccacca aggtaaaacg aagcccatgt gcaattgccg ctaaaagagc
    15781 agataaaata agggttttta aaggtggatt acaagcataa gcaaacccaa atcccgccac
    15841 agcagcaaaa aacatatctc ttaaaataaa ttcaatcatc ttaaaatccc aaaatccgaa
    15901 atactaagcg tcatgtaaat tccaagtgct atacaacaaa tcaaaatagc cacgctgata
    15961 atacggctaa gccccattaa aatatgatct tttaatatat caatcacaga atttataaaa
    16021 aatacccctg gtataagata caagatacta gaacccaaag ccacatcaga agtattggta
    16081 tatcccatat ccagtccaaa aaatacaaac cacgatgaga taaaagaaca aaggatgtat
    16141 tgaattctta aatcaatctt tgctttagtt aaaatatatc ttaacaacaa tcccacaaaa
    16201 gttgcaaaaa atactaaatt tccagcacca aaatcaccac caaaaagcct acaaaaagct
    16261 gaatttgcca tagaaacaaa taaaagatta agcaaataag aatgcttttt ttgttgagaa
    16321 atttgcccaa aaacaacttt tactttttca agatcgtatt tgtgatcata tatagcccag
    16381 cttaaagcac ttaaatcaaa aataagctta aaattaacat gggcatgatg attaggtata
    16441 acataagttc tttgaatgga gttatcatcc atatccacaa catttaaagt aatatgatga
    16501 aaaaagaaat tgatatttat ctcatagcca taaacctcag ctattcttcc tacgcatttt
    16561 gccaccctag ctgtataagt tccagcacct agtaaagttt tagtatatac gattaaaaaa
    16621 ttagttaatc tttgtatatc aggtttttcc atattttaat aatctttgat tgaatttgtt
    16681 ataattatag caaattttaa aataaataag gagaaaaaat ggcaaaaatc ggtatagttg
    16741 gtttaggtta tgtaggagct gctagtgctt atagcatagt tactcaagga atttgttcag
    16801 aactttactt atatgatata aaacaagatt tagctctagc tcatgcaaga gatttggaag
    16861 atatgtcagc cattcatttt tcttatacaa aaatttttca tgtgccaaat ttagaaaatt
    16921 tagcttcttg cgatattatc attttagctt ttagaaaaga aagcttaaaa gaattaccta
    16981 gtcgcttagt agaacttcaa aacaatatcc tcgaacttaa agacattgtc ttaaccttaa
    17041 aaaatgctaa ttttaaaggc aaatacattg tcgcaacaaa tccaaatgac accataactt
    17101 actacactca agtattaagc caattaccta aaaatcatgt ttttggcagt ggaacaaatt
    17161 tagatagttc aagacttaag aaatttttag ccaaagattt aaacataaat tcaaaagata
    17221 tttttgcttg tatgattggc gaacatggag attctcagtt tgcagcactt tctaatgcaa
    17281 gcattttagg acaaaattta ttagattttt acaagcaaag attaggcaaa gatttagaca
    17341 tacaagaact cgaaaaagcc gtgattagcg agggatattt catctatgaa cgcaaaggaa
    17401 ggacagaatt tggcatagga acttcttgtg caaatttagc caaagctatc ctagaagata
    17461 gaaaaagttt gcatcctgta agtgtggttt ttgatgatat agctttttca atgcccgcta
    17521 tcataggaaa aaatggtgta gaaaaggttt ttgaattaaa attcaatgaa aaagaaaaaa
    17581 caaaattaga aaattcaaaa caacaaatca aaaacgctat acaaagcgta aaagataaaa
    17641 tttaagcctt tttaaaaggc tttttgattt tgatataaat taaacttgct aaaatcacaa
    17701 aaacaattat aatgattaaa atttgagtta aataagtttt aatcaactct tcattttgcc
    17761 ctatataata acccaaaaat acaagtatag ccacccaaat agcactacca agtgcagtaa
    17821 aaagtataaa atttataagt ttcattctta ctaaacctgc aggcatagaa atatactgac
    17881 gaatccctgg taaaagacga caagtaaagg ttgaaaattc cccgtgtttg ttaaaaaaat
    17941 cttcaaattt agcaaattta gcttcattta taccaaaata cttaccccat tttaatacaa
    18001 aatttttgcc ccaaaaaaag caaatatagt aattaatcaa agctcctaaa acagaaccta
    18061 aagtcccgct aagtatgcaa agagtgatat caagatcacc tttatgtgcc aaatatccag
    18121 caggtatcat aacaacttca cttggaaaag gtataaaaca actctctaag gtcattagga
    18181 taataatacc caaatacccc caagcactag ccgtctcaac aataaaagaa atgatttctt
    18241 gcatattagc cttatttgaa gaaaatttta aaaaattgta gcttaaaaga ttaaacagta
    18301 aaaagcggtt ttacaccgct ttttttattt acctgcaacc gaaacttgat ttggattgtc
    18361 cgctgcacga gcgatcatac actcttttaa aacagcagca tcagctggat cgctaacttt
    18421 tttattaatc cagcgttcaa cttgtttcat tgtttttgac tctggctctg gagcttcgta
    18481 ttttgccatc aaacttgcac aatcagccaa agcaatgata ggtaataaac ttgcaaaaag
    18541 tatttttctc atcttttgct ccttagaatt ttacattata cattaacatg atattatcag
    18601 ctcttgcttt atcttttttc gctccaccaa atggcaagcc acgattaccc caaatatttt
    18661 ggatattagt ataacttaag cgtaagaatt gatatctatc aagttgataa atcacataaa
    18721 aatcatgtgc tgttcctctt gtcattctta tattaagtgg atcgttgata cttggacggc
    18781 tcatagtata ccagtatcta cttccccaga agaactcata ccctactttt aaagccttgg
    18841 taaaatcata gcgtccgcct acatgcacag cataaccatc ttcttcatta aacttgccat
    18901 tataaccttg tgtctgaaga attccactta atgtagggct taattgactg ttgttcccgt
    18961 gagaataacc taaagataga aaataattaa aattcgttcc aaaagcttta taattttcaa
    19021 aatgaagatt tgctatagtt aaatctccta aatttaccac accatcatca tcaagaatag
    19081 tagtagcacc gctaccagca ccaggtaaag caattggacc attgttaagt ggcaaagcaa
    19141 aatcgcttaa atatgcaata ttaaataata ttaaattatc tcccatacct tctataggaa
    19201 gctctccttc tactgcagca tagtaaagat ttgcatcagc atctttttga tcgctcatcc
    19261 agtctcttac cttgccttct tcatcccatt gataagtttt accataagct gcacggatag
    19321 ctactttatg atcttgcaaa ctttcaggtt tataagtgat cactgctgca tcacctagag
    19381 cattaatcgc taaggctgga taagttgatt gtcttaaagc attgtttcta agattacttc
    19441 ctgggccatc ggttcctggt tgtcttccta cagtcgcaat ccattcaggt gtgatgtagt
    19501 agtcaagata agctctatct acataaagta caggcccgct tgatcttgtg tttcttcctg
    19561 catctaagtc ataaggagta ccactccaac ccatttgaga ccaattttta gccatagata
    19621 aacgaccata gaatttggtt ttatcattaa tatcagcatt catatttaaa tgaagctcat
    19681 tcatccattt gttattagca ctataatctt gtccgctaac tttatagttt gtatttgaaa
    19741 ctgctgttga aaactcaagt ccaaatttaa ccttgctcaa agcagcttgg aattctgttt
    19801 catcggctct atcattaaga tcagcaagtt cagcttttac agcttcattt tgcttagctt
    19861 gaacttccct ttcttttctg atttgtgcaa gttcagcttg aatttgtgca agctgttttt
    19921 gaagcttggt tatctcatca tctgtatttt tagcaaaaag tgaagatgaa agaagacaag
    19981 cacttaaaat aagtgaaaac ttagttttca taatcataac tccttgtaat tttgttacat
    20041 ttagcaaatt aaaattgtga ttatagaaaa aaaagtttaa aaaaaaatta tacattaatc
    20101 atttttagct agtcaaactt atgactagct ttgtaaatat tgtagtttta aaaaagtttt
    20161 aaaattttaa atttttaaat tttatcacaa atttttatgt ctaaaatttt atctccttgg
    20221 cgtatagagt ctaaaacttc taaactttct tcatcttttg gatcaatttg cccaaaaaca
    20281 gtatgaactc catctaaatg agcttgaggg ctgtgacaaa taaaaaattg agagccaccc
    20341 gtatcgcgtc ctgcgtgtgc catagataag gttccacgct catgtttatg ttcttgatca
    20401 tcacattcgc aaatgatttc atatccaggc ccacctatac cattgccgtg tggacaaccc
    20461 ccttgtatga caaaatttgg gatcacacga tggaaattta aatctttata aaatccttca
    20521 ttagccaaag tagcaaaatt acaaaccgtt tgtggagcct catcgccaaa aagttttagt
    20581 ttcattgtgc ctttttcagt ttctataaga gcaaatttat attcgtttac tttgcttgtg
    20641 tcaattgttt ttatcattat ttctccttaa tctatatttg tataaacagc ttgaacatca
    20701 tcatcgtctt ctaacttatc taaaagtttt tctatatcgc taagctgttc ttcgctaaag
    20761 cttacaggat tgtttggtat atactcaagt cctgcttttt taagaactaa acccttagct
    20821 tctatagcag aacttagctc accaaaggca gtataatcac cgctaattac taactcttct
    20881 tcattttgtt ctaattcttc aagccctgca tcgatcaaat caagttctaa ttcttctaaa
    20941 tctcctgcaa atttttcaag atgaaaaacc gcttttctag taaacataaa gcctaaagat
    21001 ccattttgca aaacttctcc accattttta ctaaaaatag cttttacatt agccacggtg
    21061 cgtgtagggt tatcgctcat acattcaact ataaccaaag ctccatgtgc agcttttcct
    21121 tcataatgaa tgtttttaat atctgcgcta tcctttccac tcgcacgctt aatagccgca
    21181 tctatattat cttttggcat attatttgct tttgctgtag ctatagcact tcttaatttt
    21241 ggattcatat caggatcagt gccaccttct ttagcagcta cttgtatggc tttagcaagc
    21301 ttaggaaaaa gcttactcat tttatcccat ctagcctctt tagaagctct tcggtattca
    21361 aacgctcgtc ccataaattc tcactttctt taaagatttt taaacttaaa agtataaact
    21421 aaaaaggcta attaaagctt taaatggtat gattttatta tttttgggga gaagcttttt
    21481 gaatatcgca aaaaaagaac tttttgttgc ttggtttttc ttgattgctg ctattgtatt
    21541 tgaagtttta ggcactagtt ttttaaaaat ggaaaatcaa gttttaggct atatatttat
    21601 ggctttattt atagcttttt cttatttttt tatgggcaag gcgattaaaa aaattcaagt
    21661 aggtatagcc tatgctgtat gggaactttt agggattatt cttatacttt tagtttcttt
    21721 tatagttttt aaagagagtt taaccttaac tcaaattcta ggcattattc tttctatcgt
    21781 tggaattatc atgattaata taggcgaggt taaagaataa tgtatatttt tatcattgtt
    21841 ttatcagcat tgttagatat cgtagcaaat ttattgctaa aaaaatcaga tggttttaag
    21901 cataaaattt ggggcttggc tgcgattgtc aatgctatac ttgctttttt tctactttct
    21961 ttttctttaa aatatgttcc tttaagcata gcttactcaa cttggggtgc tataggcatc
    22021 ataggaactt gtcttggtgg atggatttta tataaagaaa aattaaacaa aataggaatt
    22081 ttaggtatca ttatcgtaat aatagcagta tttttgctaa attattaaaa cagcaaaatg
    22141 cggttttaat gttccatttt gttttttgct tcaataccca ttaaagaaaa tgcggtttta
    22201 atactaagag caaccaaaga aaataattta agcaaatcat tttcatttgc agagcctaca
    22261 actttatttt cattgtagaa tttatgaaaa tttgcagcta aatttttaag ataatcagga
    22321 attttttgca aagctctagc ctcaaaagca tcgtttaaaa cagcctttaa attcaaagct
    22381 tcaaaaagca aatttacgcc atcttgattt aaactttgta aatcagcttt cattacatca
    22441 tcgatttttt taccagcttt agcaaatact tgatgaattc tagcgtgtgc atagttgata
    22501 taatacacag gattagaact atcttctttt tgcaaatcac taatatcaaa ttccaaatgc
    22561 gtatcgcatt ttttgctcaa aaagatataa cgcaaagcat cacttcctat ctcattaacc
    22621 acatcgctca tcaagataaa atttcctgct cttttactca ttttataagg ttctccatct
    22681 ttaagtaggg aaaccatttg tgctaaaata atctcaagat tattagagtc aaatcccaaa
    22741 aattccatcg cagctttcat tctagggata taaccatgat gatctgctcc ccaaatatta
    22801 atacactttc cataaccacg actcatttta tctttatgat aaacaatatc tgctgccaaa
    22861 taagtcccgc gtccatcttc acggataatt accctatctt tttcatcgcc tttttgcgaa
    22921 gaagcaagcc aaattttacc ttcttgctcg taaattcctt tatgctcttt taaagattct
    22981 aaagttgcat ttaaagcatc ataatacgat ctttcgctta catagctgtc aattttaatc
    23041 tttgcttgtt ctaaattttg tttaatcaaa acaagcattt tatcttttgc ccaatcagcc
    23101 aaactaggga tattttcttg gctaaaaaat tctttaccaa atttttcaaa agcttctttt
    23161 gctaaatccg ctatatactc gcctttgtaa tattgctctg gatattcaac attttcatga
    23221 agtatacttt ctttcacact tagtaaaata gaaagcccta gtaaataaat ttgattaccc
    23281 gcatcattga catagtattc tgtattaaat ttatagccca aatgtcttgc aagtcttgtt
    23341 aaggtgtctc caaaaacagc gcctcttgca tgtcctatgt gtaaaggccc agtaggattt
    23401 gcactcacat attcaagcaa aaaactttct tgtttttttt ctcctttagt aaaatcattt
    23461 ggatttgtta aagcctgatt tgcaagttca tttaaaaaag ttttggaaat tctaaaattt
    23521 aaatacccat ttacagcttc aactgattca aaacaatcat gattttgaaa tttgctcgct
    23581 aagtcgctag cgatcaacat aggggatttt tttaattcct tagccagtga aaaagccaaa
    23641 ggggtagcaa aatgtgctaa atttttatcc tttggatttt caagcgcaaa atcacactct
    23701 aaaatctttt taatttcatt aaaaataata cttttcaaaa gactaaacct taagcttttt
    23761 ttgtttcgtc tatacttgca tcagcatttg tattattagt tgtgtttttg ttttcttcta
    23821 ttttttgagt attttttgct acttcatcat cattattcat ttcatcttta aaagttttaa
    23881 tacctttgcc taaacccttt gcaagttctg gaattttttt tgctccaaaa agcaatacaa
    23941 caatcaataa aataatcaac caatgacttg gacttgacca accacccatt ttattctcct
    24001 tcattccaaa tattttgaat ttgccctaga ttctgccctt tggttctaaa tttatgggcg
    24061 attaaaatcg ctcgcaatgc ttcataactt tgctttaact catcgttaat gataagataa
    24121 tcatactcgc taagctcttt catctcatca ctagcgtttt gtaatctttt ttctagttgt
    24181 attattgtat cagtatttcg cttaataagt ctttttttta actcatcttt attttttgta
    24241 gtaataaaaa cagaaacaat cttatcagcc attttttttc tggctatttt aaatccttgc
    24301 acatcaatat caaaaacaac tatttttcca ttatctaaag cattttgagt gtgctttaaa
    24361 gaagtaccat aaaaattttc atgcactcta gcccattcta aaaaatgatc actatctata
    24421 cctttttgaa attcttcatg ggatataaaa tgataatgta ttccattttt ttcaccctct
    24481 cttggtttgc gagttgttga agaaatagaa aaataaagct catcttcaaa ttcatcaaaa
    24541 agttttttta aaagagttga ttttccagca ccactaggac ctgaaatcaa caaaacaaaa
    24601 ccttgcaatt tcaatcctct ttaaaactaa tgtttatatt tatattcata ttcataccct
    24661 taagagcagc ttttaaggta tcatctttaa tacttgaagt gatcgctcct gctatgcttt
    24721 ggctaagctc attaactatc tcttcgctat tatcatcttt agttacatca cttactatag
    24781 gctcttcatt tttttctaag atttcctctc caagagcttc ttgtatatca ctttctttca
    24841 atgtatcaaa atcacttata tttaaatttg gcacaaccac ttcctcttca tttgttccta
    24901 attctttatc gtctaaaatt ggttcatctt taaaatcttc taagaccttg ctactattgt
    24961 cactatcaat accataatca agctcatcaa gttgagctag ttcttctttg atttgatctt
    25021 gagtactcaa atttgaagca aaatcatcta tttcatcttg aacatcttct tccacaacag
    25081 gagcaaactc ctctaaattt tcctctgatt cttcattata ttttgcttga cctaaaaatt
    25141 cagcatcctc aggaagatca tcaaaatcca tttctttttc ttgctcttca acctcaggaa
    25201 gatcatcaaa atcgcttata ttagcttgta attctttatt atcttctaaa tcttcatcat
    25261 ttttatcatc tagctcatct aaactaggct cagtatccaa agctgtatgt tcttggctta
    25321 agtcttcttt ttcgctttca ccatcttcta aagttaaatc taaatcagtt tgagtgtctt
    25381 cttgagtctg ttctttaatt gtttcttgtt ctaaattgtc atgttctaaa ttttgagttt
    25441 ctaaagtttt gtttgcatta tcatcttgag attcgctaag ctcttcttgc atttctaatg
    25501 tatttgtttt agaatcgtct aataattctt gcttttctat ttcttcattt ttatcatctt
    25561 ctttgatttc taaatcttca tcatttttat catctagctc atctaaacta ggctcagtat
    25621 ccaaagctgt atgttcttgg cttaagtctt ctttttcgct ttcactatct tctaaagtta
    25681 aatctaaatc agtttgagtg tcttcttgag tctgttcttt aattgtttct tgttctaaat
    25741 tgtcatgttc taaattttga gtttctaaag ttttgtttgc attatcatct tgagcatcat
    25801 catcaaaact caaatcttcc attccctctg aatttatatc taaagaattt tcatcaggca
    25861 aatcatctaa atttaaatta tctaaatcca agcttatatc agcataagga ttttcatcat
    25921 tgcttaacat tggcaaatca atagatgtat gcttgttcgc atctttatta ttaagtaaat
    25981 ttaaaaaatc tgtaggtaaa aaaggttttt gtaaaatttg cgcatctata tcttctacat
    26041 tttgatttcg cggggctaaa aaaatcaatc tatcgcattt ttctttaaga atttttaaag
    26101 gtgctggagt atcactatct acaacaatca catcataatt acccaaattt tcactataag
    26161 cattaagttc ttcaaaatca taagacattt ttttagcact aaggcttaca agtcttgaaa
    26221 ctacagggtt ttcatttaaa agtaaaattt tcatcacttt aatccttaaa aaataatcgc
    26281 tattttacga taatttcatt tatcctttcc ttaggagaaa aaaagagttt gcatatgagt
    26341 aaaaagttct aaaattaaat ttttaaaata ttgcatcata actagtaaaa tagcaatcaa
    26401 aactacaaaa cctagagcta tctttatagg atagccaata actaaaagat taaattgtgg
    26461 cattgttttc atcaaaagtc caaaaataac atcggctaaa agtgaaattc caagtatagg
    26521 aaagctcata gtaaaaccta tgatgaaaat attaaacata cccatattta aataatgcat
    26581 taaattctca tgcggataaa atccacctaa actaatataa cccaaagaat gacttaaaaa
    26641 caaaagcatt aaatgatggc catcaaaagc aagaaaaaac atcaaagcaa gtaaatttaa
    26701 aatttgtgcc gtaataggca tactcgttcc agaacttgga tctaatatac ttgccatagt
    26761 aaatcccata gtaaaagcaa tctgctcacc tgccatcata ataatagcaa aaataatttg
    26821 aagcattaat cctgctatca ttccaaaaat cacttcacta ataagctgta aaacaaaaaa
    26881 actatctaaa tgcaaagatt ctaatctagc caaaggatat aaatacatag tcaaaaataa
    26941 aactatagta ctttttatta ccataggaat agaattatgt gaaaaaaaag gaaaaaaaac
    27001 tataagacca ctcattctag caagaagcaa cataaaagtt acaacatttt tatcgcctaa
    27061 ataattaaca aattccattg acgtttatag tataaatttt atcacaaaaa cttgcgagct
    27121 tactatcgtg agttacaaaa aataaagccg catcattttc tttaacataa gaaattaaaa
    27181 gttcgataac atttttagca ttatcaaaat ccaaatttcc agttgcttca tcagcaaaaa
    27241 taatctttgg ttttttacaa agcacacgtg cgatactcac acgctgttgt tgtccgccgc
    27301 taagctttcc tattttttga tgcaaaagtg tatcaatacc taaccttttt aaaattttct
    27361 catctaaatc ttgacccgat aaaacactag caagttcgat attttctaaa gctgaaaaac
    27421 ctttaaaaag ataatgtgtc tgaaaaataa taccaaaatc atagcggcga atttttaatc
    27481 tttcgttttc atccatctga taaagattag aacctttaaa aaaaacttca cctttttttg
    27541 gaattaataa agaagaaagt atatgcaaaa gagtagattt accacaaccg ctactccctt
    27601 gaatagcaat gcaatcttta gtatttaaag taagatttaa accctcaaaa agcggataat
    27661 caaaactatg gcttaaattt tccgctctta agagttccat ttttaaccgt ttttaaagtt
    27721 gtgcagcaac ttcagccgca aaatcttcag ttttcttttc taaaccttca ccaacttcaa
    27781 agcaaataaa ttctacaatt ttaatttttc caccaaattc tttttctttt tcggcaatta
    27841 cttgttctac agtttttttg tcatccagta cataaaactg acccattaaa gtaagtttgc
    27901 tatcgagttg agaattatcg gctataaagc tattcatttt acctggaatg atattatccc
    27961 aaattttttc aggtttacct tgagctttaa gttcttcttt gattttttct tcagcttctt
    28021 ttaaaattgc atcgcttaat tgtttgcgac ttgcaaattg aggaatttta tgttcaggtt
    28081 tatttggatc tttcagtctg cgtctttctt cattttcttt ttcaagttca gcaaccaaag
    28141 ctttgtattc attttcaaca aaagtcatat ccaaatcttc ataacttaaa taacttggtc
    28201 tcattgctgc aatatgcata caaatttgtc ttaacaaatc tcttgatttt gaagccactt
    28261 cagtgctatc acaagctgca gcgatcacaa cgcccacacg gccatttgta tggatataac
    28321 catttacaac gccgttagca cctgctttta aagttgcaaa tcttcttaca actaggtttt
    28381 ctcctatagt tgcaatttga ctttttaaat attcttcaaa ctttacacca ttaatcgtac
    28441 ttgagtgaag ctcttccaca ctttgcaagc tattgctttg aatatgagct gtagtatctt
    28501 ttgttaaagc gataaactga tcattttttg ccacaaaatc tgtttcggaa ttaatctcac
    28561 ttacagttgc gcttgtaaaa tcatcactta cttttacact tactaaacct tctgcagcaa
    28621 gtctatctgc ttttttagca gccttaccta aacctttttc tcttaaaagt tgtactgctt
    28681 tatcaaaatc tccattagtt tcactcaaag catttttaca atccatcatc cccgcgcctg
    28741 tactttcgcg gagttctttt accattgcag cagtaatttc agccattatt cttgctcctc
    28801 accgaagtct tcttcgctca tcgcttcatc taaaacttct tttttctctt catcggtgat
    28861 ttctttttct tcatttgcta aagcttcgcc atcttgttct cttaaagctt ttccttcatt
    28921 aatcgcttca gccatttctt ggcagaaaag ttgcactgaa cgaattgcat catcatttcc
    28981 tggaatagga taagttacca agtcaggatc gcagtttgta tctagtggag ctacaacagg
    29041 aattcttaat ctatttgctt cttgaacagc aattttttct tttactgtgt caataacaaa
    29101 aatcatatca ggttgagttt tcatataacg aattccaccc aaataagcta ataatttttc
    29161 tttttttctt gtaagcatta aagcttcttt tttagttaaa agtttaatac ttccatcttc
    29221 ttccattttt tcaattactt ctaattttct aattgattgg cgaatggtac caaaatttgt
    29281 catcataccg ccaagccatc tatgatttac ataaggcata ccgcattttt cagcgtattc
    29341 tttaatcgct ccacctgctt gtttttttgt cccgacaaaa agtatagttt ttccttcggc
    29401 agcagcgtca cgaacgatat tataggtata tctaaaatat cttaaagttt tttgtaaatc
    29461 aattacataa ataccttttc tctcgccaaa aatgaatttt ttcatctttg gattccagcg
    29521 tcttgtttgg tgtccaaaat gcacaccgca ttctaataaa tctctcatac taaccatgag
    29581 tttctcctta taaatttagc tttattcctc cacatccctt aatttacaca agctaaaaag
    29641 gattgatgcg tgtgaaatga agctaagatt ttatcaaatt taagtttagt ttttacttat
    29701 atatgtagtc cttggtaaga cttagattat tattgatttc ttttgtgatt aaaaattgaa
    29761 acaaatccac gcttccaaca cgaaaagcag aggcacaaga acgaaggtac aaatcccaca
    29821 ttcttataaa ttcttcatca tatttttccc ttaccttgtc caatacttcg ttaaaatttt
    29881 catcccataa atctaaagtt tttgcatagt gcattcttaa actttctgct aaaagaagat
    29941 gaaaatccca ctcactcata gcacttacaa cctctcttaa agaaggtaaa tatcctcctg
    30001 gaaaaatata tttatctatc caagcatttg tttttccttc aaacatggct aaaatagaat
    30061 gtaaaagcat agaacctcca ggttttaaca cttgttttac tttcatgaaa taaagtccta
    30121 aattctcttt gcctacatgt tcaaacatac ccacagaaac aactttatca aaataatttt
    30181 caaattctaa atcttgataa ttttgaagtc ttatttctat tttatcttca agaccaagtt
    30241 cttttactct ttccttagct tttttacact actcctctga aatagtaatt ccaacaacct
    30301 taactccata cttttgagcc gccataatag aaagccaacc ccagccacaa cctatatcta
    30361 aaagcttttc tccttctttt aaatcaagtt ttttaagagt atgttctatt ttgttaattt
    30421 gagcttcata aagagtatta ttaggctctt taaaataagc gcaagaatag ctcatagtat
    30481 catcaagcca aagcttataa aaatcattac ctatatcata atgacttttg atatttttac
    30541 tttcctgttt ttgggctatt ttactcaaga tatcctctgt attttttaaa aaacgcttat
    30601 ttgaaaaata atacaaaact ttagctattt catcataatc accttctatt tctagtttag
    30661 actccatata atgttttgca aaaactaaac tcgtatcact aaataatttt aaaaaaggta
    30721 ttttttcttt gaaaattaaa gaaaatttag caggctgatt acccacatga aattcttctt
    30781 gatcccaaaa tacaattcta aaatttccat aattccattt tgaaagaata aatttaatca
    30841 tttgtttttc aagcatgaca tactccaact a
//
LOCUS       DAQSLY010000006        28659 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.006, whole genome shotgun sequence.
ACCESSION   DAQSLY010000006 DAQSLY010000000
VERSION     DAQSLY010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28659
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.006"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..903)
                     /locus_tag="R2H98_000191"
     CDS             complement(<1..903)
                     /locus_tag="R2H98_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEE9023121.1"
                     /translation="MAKSEYYTILTKIGIAKFIAARASGNGINLKSFKLSSKVILPSE
                     EMQSLEEIVYEANISSKSVDESNPNYVNLMCHVPSDVGGFEVNAVGVYDEAGDLLAVG
                     NVPRTYKPILKEGSAKELMIKIVMELSNAEEVILKLDPSVIMASRDYVDAIKVELNLK
                     IDALTQKYDAEFKKVWDEFAKYLLENKFNTEIAKYVTLATNQTITGAKDFTKLPTSSI
                     KATNDNQFVNLATLKENQLNLKDPELLALIGFNTYLDGTSLLKSHSMSNNVIYTNTTG
                     GKTPIAIKIQQIDNVVNQASISIYI"
     gene            complement(903..1523)
                     /locus_tag="R2H98_000192"
     CDS             complement(903..1523)
                     /locus_tag="R2H98_000192"
                     /inference="COORDINATES: protein motif:HMM:NF021220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HEE9023122.1"
                     /translation="MNTLILNHHPKQSKAIDLSAKTRFEDLNLASITNLALNCDERLL
                     PILANAYDVSIDGLNEKEARKLISKALLLDRYNGTTWAIKEALRAVFPTAVVKEWFNY
                     GGKPYFFKVKVSTTNVSFDERTLNTLERLIYDFKNVRSVLEAIEIEIKSKNDSFNANA
                     QISGETIEILPFQTTQIENNQKPSLNAMGVFMCEITRTNIDFKGVY"
     gene            complement(1520..2686)
                     /locus_tag="R2H98_000193"
     CDS             complement(1520..2686)
                     /locus_tag="R2H98_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009650649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEE9023123.1"
                     /translation="MSELLSANDSYFKQSFLKDIPYPQIIEELDYEKLLKAYEELFKS
                     FLKDNVELLESDPFKAILEALAYREMIIRARINESIKATYLHYAKGSDLDNVVANGYL
                     IQRLKGVKPTAKVEFELNTLLTYDVIIPKGAIFSNEKADLATLKEEVVIKKGQSKAQG
                     ILELDEFIQSKESKTEFLQTPLPFIAKIKQLEFFKGGASEESDEALRERAVMSVHRFS
                     TAGSEKGYIYHALSASAKVASIKALNNGAGKVRVIIKSEDELSVDVVKEYLSADERRP
                     LTDEVNVELAKKREFIVEAKLLLLELSRANEISQKINALQKDFDLSVDLALGFIYKCL
                     HQDGVYKSEILSIKEKIINEEEQELKDLPLENIIIADDEFATLSFSLSYEKAVL"
     gene            complement(2683..2973)
                     /locus_tag="R2H98_000194"
     CDS             complement(2683..2973)
                     /locus_tag="R2H98_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HEE9023124.1"
                     /translation="MNYMVSIEESIKDILITPLGSRVMRPEYGSLLYTLIDRKIDDDF
                     KIKLTRYTAEAISKWEKRVKLKGVRLNECKDNKLSITLLFENYGDLTMELGK"
     gene            complement(2970..3161)
                     /locus_tag="R2H98_000195"
     CDS             complement(2970..3161)
                     /locus_tag="R2H98_000195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023125.1"
                     /translation="MKELFLLLFSLVFFMLFCMGAFYAFLNLNFFIKSIFIGFFIAFM
                     FLGFSQMLENIFEFYKGLK"
     gene            complement(3170..3802)
                     /locus_tag="R2H98_000196"
     CDS             complement(3170..3802)
                     /locus_tag="R2H98_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HEE9023126.1"
                     /translation="MNELGIICDIKEGKAKVAIGDMVTDFLSVFQSLANSYAVSFSPL
                     RIGEQVLVIPVRGDLNSGVILRGLYQEKHRAKNTDENTFNIDFEDGTHLEYNSKSSTL
                     KLDVVKNINIACVDKTTHNQNNTLNTKNHTTNANTITLNAPSINLNGNTQIAGAISTS
                     GEGGASGTFSIKGNLNLIGNLQVSGNISDSKGDLTNHTHSCTCGATASPR"
     gene            complement(3802..4116)
                     /locus_tag="R2H98_000197"
     CDS             complement(3802..4116)
                     /locus_tag="R2H98_000197"
                     /inference="COORDINATES: protein motif:HMM:NF027409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023127.1"
                     /translation="MKLEDIFVYMVLMIVSFIAGLVGIVTKNKLSKALNLKGKFTLFL
                     KGMLGSMFVAYLVFEIVNYLNFGIKLSVAVGGFAAYMGTDALLKIEQLVEKLINKKME
                     KL"
     gene            complement(4228..4476)
                     /locus_tag="R2H98_000198"
     CDS             complement(4228..4476)
                     /locus_tag="R2H98_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023128.1"
                     /translation="MNDKMRIFLLIIPFVFLSACASKDILIKTEIKEVKVPIKCPLKL
                     PLKPLDKKDLESAKEISKYYLEVENIAKLCTGEKDERK"
     gene            complement(4473..4814)
                     /locus_tag="R2H98_000199"
     CDS             complement(4473..4814)
                     /locus_tag="R2H98_000199"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023129.1"
                     /translation="MFSFILSRFLSPSKIAFFVLIALCGFLYSKNNALALENENLKLK
                     ALHFNNEINVFKDKLAQQNKAIDKLKLDLKPKETLKEVLKVDKVFIKDKSCESELKAY
                     KELFNILGAKK"
     gene            complement(4825..5214)
                     /locus_tag="R2H98_000200"
     CDS             complement(4825..5214)
                     /locus_tag="R2H98_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF882 domain-containing protein"
                     /protein_id="HEE9023130.1"
                     /translation="MKNNPYFKESEFKCKCGKCELPQNVPSDELIDILCEIREHYNAP
                     VIINSGYRCKEHNAEVGGAPKSQHAIGSAADFVVKGVKTEEVHQYVLITYGERGLGIA
                     IKHNFNDPYAGFVHLDTRGKKARWTYP"
     gene            5363..5797
                     /locus_tag="R2H98_000201"
     CDS             5363..5797
                     /locus_tag="R2H98_000201"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023131.1"
                     /translation="MLKSFENELLELLKDFKVRMYLGEFEDTQNIASCINNLDASLLL
                     DFEGESYKDLENKVGTWKLYILTHTKSKAPKHRIDAKHKLFDAIEAVDKVLLNAEPSN
                     GFRIELKDLKKVYEGISDHGYLSIYARTLQSSFLPKDDFLRI"
     gene            5799..6614
                     /locus_tag="R2H98_000202"
     CDS             5799..6614
                     /locus_tag="R2H98_000202"
                     /inference="COORDINATES: protein motif:HMM:NF021627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023132.1"
                     /translation="MLFINKENLVEVSNDKPIKVAIKGEWKGHNNGRFKVDDKDLNSM
                     IDNFNQKKIDLVIDYEHQSLKNEKAPAAGWIKELYLENDALMAKAEFNEEAKKYIANK
                     QYRYLSPVFEFNSKDNKSGELVRAKLHSVALTNTPFIDELGELIANKNNIHQNKGEKM
                     DEKIKELESQIIALKNENSSLALQNEALKKQNEESVKNLASSLVDNALNSGKIANSQK
                     EWALMYACKDLEGFKSFLDTKNDQVQVPKNNVFANKNTAKTNEFDVVKMMLGD"
     gene            6617..7144
                     /locus_tag="R2H98_000203"
     CDS             6617..7144
                     /locus_tag="R2H98_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023133.1"
                     /translation="MAKAKKETQNLENEDLETGDLPKALSLEDENLVNEEAVSENETT
                     KEFINEKGEEMPSKVTPKSLSNDPLIAMPKSLESFINKDLFSINAKIDLETNGSLALG
                     TLLISEDFGESFKKCPNEDISAKENVKLAMLKDHALSSGIYGVLLAGEINLKGVHVSA
                     VKKAFMQNLIINTKE"
     gene            7147..8124
                     /locus_tag="R2H98_000204"
     CDS             7147..8124
                     /locus_tag="R2H98_000204"
                     /inference="COORDINATES: protein motif:HMM:NF015802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HEE9023134.1"
                     /translation="MDLEQLLELFSSTKITEVINQTKASPRFVSDTFFKDKIPSLEST
                     VRVEIIKGAGIVLNSISDNGEHSLENTKDAYILNIPLPRFALAKRISASEINSLRSLA
                     LQEAQAKSLSGALGVLVKEMKESFNTTLEYMANGALFGKILDGKGNVLFDFGSASKKA
                     ISVKKDGSVTLDSVCDAIDSAIIDEFGTSADYEVLCGNELFAAISNLALSEDLYKNHL
                     ASRDEKDKSLILYGTKYRRYSAKYKNTNGKSVEFLKGTEGMVVPKDNSNRIYYTRANH
                     TDALGKAPSLMFVSKPEILPRGAGIEIVGEMRAMPVCTRPNGLIKLVLE"
     gene            8240..8698
                     /locus_tag="R2H98_000205"
     CDS             8240..8698
                     /locus_tag="R2H98_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 family protein"
                     /protein_id="HEE9023135.1"
                     /translation="MNYQDILEEKLITETKTHFFMIDEKDLIKELSVHAIAELSDLNA
                     DGVCDKEVIDDAINDAQSYIASFIKIPKNPTPLLKDICVKLTIMELKRRNDFPKESLE
                     EIREWANDLLLKMANKKIPTEINEDNFIPQNKFRAFKIKRKRMDLRRLNG"
     gene            8691..9290
                     /locus_tag="R2H98_000206"
     CDS             8691..9290
                     /locus_tag="R2H98_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HEE9023136.1"
                     /translation="MAKNLTSTTKPKMAKVGCGLQVGAESETPARKDKFTSSAKSQNN
                     LKDLAKELYIAGFDIFKIAKILNRNEKTIRNYKAKDGDWDKQKANLLTSKIKDKESAS
                     LYESFTEQMFCAIENINTDEKMNAEKKTEAIARIGDSFSKMRKVARLEDPSSYRLNVA
                     KKVVEIIISHLKNDKDCVAKLVSLLESGVIEKEILAMDI"
     gene            9290..10960
                     /gene="terL"
                     /locus_tag="R2H98_000207"
     CDS             9290..10960
                     /gene="terL"
                     /locus_tag="R2H98_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEE9023137.1"
                     /translation="MLFSKEELDEFLISNEQKHENTPNELKGAMQRKDFLEWMDELKN
                     ELKTQFLHESHLDPTLKEERIKRASVDFDYFARTYFPHYFTIKGECGLHLHLNEVFTK
                     IALKKESKGEKHAIAAPRAHGKSTYTSQLFPLWCLVFNYKSFIVEISDAVELMEGMLE
                     AIKAELEDNPHLKLDFPEVVGIGKTWRVGEFVSNNGVKIKAFGSGKRLRGVRYGVKRP
                     DLVILDDLENDTNVRSKDQRDKLEDWVDEAVLNLGSADGSLDVLYIGTILHNDSVLSR
                     KLKLGFWNPKVFRSIEEFPQRLDLWDEYAMLYRNADFNTAHQFYLKNKVLMDKGAKVL
                     WKEAKSLEDLMKLRAENLKAFNKEQLNNPRSENQIFSLDGINFYDDLPAINQYYMYID
                     PAGEKAKSDFTAITIIGKGAKGFYVAESIVKILKAQSIIKTIFNLQKIYKCRLIEIET
                     NGGQFFLKKWLQEKSLESGVFLPLRGKNNSVSKFERIESLSLAFENEELFLHKSQTML
                     INQLLEFPEGKNDDAPDSLAGAFLLARTKSSIKRRKHHFNSVSRIRRF"
     gene            10970..12340
                     /locus_tag="R2H98_000208"
     CDS             10970..12340
                     /locus_tag="R2H98_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HEE9023138.1"
                     /translation="MKKEIKSKREVILKNNSLINTLINSSYLNVLKISENDQKMIFKD
                     LSFTQAHQSRRSVILAKELQIVCENEKIKESFEYLFNPDLLSQILETYLYGLNVFEVN
                     YKLKDGFYYPILKQRDFRNFGFNENDELVYNSNGCEEIVEDKKAIYGLFGSNFLFKNG
                     DALLTKLYFPVKLKNASLKFWMEFLERFGSPWAVAKTDSDPDALASEIHQMLNGDSAV
                     IDKEEELDLIQPKAKANYNEIIDYLDNQIRSVVLGANLSSQVSGGSLAAAESHNQIRK
                     DLAAQDGQIVLFILNRAIKFFKEINHFKDELYVQFFSEAEPKSELCERDLKLFNMGFC
                     FDEEYIKNTYNVEGELIRETLEKKDFKDLENDKKVFENKVKLESFEEDFIDKGLEQKE
                     YLKVDESMSKFFQEQFESIVKDCKDFNEALNKLKENFSSLEQSEFEKHLFIALNNSSI
                     LGYLED"
     gene            12342..13580
                     /locus_tag="R2H98_000209"
     CDS             12342..13580
                     /locus_tag="R2H98_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023139.1"
                     /translation="MTGAKIGFFSEPTKAVDFLKNKKPELSFDYDELSYSTHKKVFTI
                     AKLMDESLLKDMQDTLVNAIKNGDKFSTWSKIAEEKLKAKGWWGSKEVINPKTGEVKK
                     THFNSARLKKIFEENSRKAKAKAIYENQMKSTKPYFKYCTQKDSLVRDKHRAFDGIVL
                     HKDDPFWDSHYPHVTMHDYGCRCYVLEVGESEVKGLKIPPSNAKESEFNGFNDEELLD
                     ELYKQKNTEVIQNFIKLDMLSAAAKKTKEVKSFTHQKELYTWQKSLDDMVDEVIIKDN
                     QKYPINFIQVGKMDKSTKEFLEKLNKKDLEDLYFTLSKNNLLHASPKRKASYNQALSA
                     DEIKQIVKVLDEAKEVYWDNANNSLLYFFEDKKDASRINKIVITPDYKLKKFGKTNAI
                     VTLGKVEAINKDNKTYIKIR"
     gene            13706..14080
                     /locus_tag="R2H98_000210"
     CDS             13706..14080
                     /locus_tag="R2H98_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEE9023140.1"
                     /translation="MVLALGEFEFKALNFDNLERSLEYNIQSQNRLNNHNALFASSKE
                     SEKIKIQGKTLPLKGDRNTYLDKLENMAKEQRSFILTGANGKYYGKFVILSLNENRSA
                     FVDGSGFVAQSFSMDLERDFDE"
     gene            14073..14264
                     /locus_tag="R2H98_000211"
     CDS             14073..14264
                     /locus_tag="R2H98_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HEE9023141.1"
                     /translation="MSKIYIAKNNERLDSIVYKHYGTLLYFNQVLLANPRLEPLLKTG
                     DKVILPSIKIKESKEKALW"
     gene            14258..15235
                     /locus_tag="R2H98_000212"
     CDS             14258..15235
                     /locus_tag="R2H98_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEE9023142.1"
                     /translation="MVRKPKFKLIAKGEDITEKLSKNLINISYEDKEKAESDEISLSV
                     FGLYSKPLFGDSLELWLGFEKLYKCGSFSVNVVSKNYTSNTTEVRASAINFSGKGSVN
                     IKEKKTRSFENTTLFTIARKIANENNLKIKTSGEDQNIVSILQNNQSNLEFLYSICFD
                     YGFICCVKENTLIITPKDGKIGDNAANITSKNENLPLFEIALKECISLEISESARNEY
                     SAVIAEWQDINEAKIKSIKVGSGENIYKMQISQPKNDNEAFKKAQAKLNELQKGGLNG
                     RCELIGREIRAGGKLKIKDINMDHYEFSIKSVSHSFNDQAYIISVEFES"
     gene            complement(15232..15516)
                     /locus_tag="R2H98_000213"
     CDS             complement(15232..15516)
                     /locus_tag="R2H98_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEE9023143.1"
                     /translation="MLSNNEYFEYFIDFVKNNDKREILKEFGGANIYIPSYKTLLRDE
                     ELKQDFKTLIKQGISTKNASVECAKKYDLSLNAVYLITKELRENLEPSLF"
     gene            15610..16281
                     /locus_tag="R2H98_000214"
     CDS             15610..16281
                     /locus_tag="R2H98_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEE9023144.1"
                     /translation="MKKIISVLILALSLLNAKSFEESKKELVKFYNDLGSSYWYDFYC
                     QAPFKVNKKGKYISFEVIKSDLYAPRNEYTKKGKINQRIKRIEWEHIMPAQNFGKHLP
                     CWKEGGRKACKNDPTFAKMEADKQNLVPAIGEINGDRSNFRYAEAPTNLKYTQYGNCK
                     VYTDFKAKRFYPANYSKGWIARSYLYMSKTYNIRLSDQERKLMEAWDKQYPMDEKEKR
                     IRALL"
     gene            complement(16273..16548)
                     /locus_tag="R2H98_000215"
     CDS             complement(16273..16548)
                     /locus_tag="R2H98_000215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023145.1"
                     /translation="MILEIHSYDAEFFLTLGIEKHSQIAFAAKRTSLEIMHNGITHQI
                     KTDKDFGILLNVVCNIREKLDESFEEEDKSLVIDIDEIVAKVCKELE"
     gene            complement(16595..17044)
                     /locus_tag="R2H98_000216"
     CDS             complement(16595..17044)
                     /locus_tag="R2H98_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HEE9023146.1"
                     /translation="MNTQNTLKKHLIKIIHTLRKDANLSDDESYRWVLNQRYGKASSK
                     DLSIDELRDFAITLGYDEKFLKKQNTKKARYFKKENTKSGRATKKQLNMIQAIWSKNA
                     KNPTQWALREFINNIVKKRPLHLWYLSIEDANKVILGLKNLENNSTH"
     gene            complement(17041..17733)
                     /locus_tag="R2H98_000217"
     CDS             complement(17041..17733)
                     /locus_tag="R2H98_000217"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023147.1"
                     /translation="MDNAKEALKELFGISEVQAVVIEKLYFKAKTPKDILGFKKYYDL
                     TMLKKQFVGTSYEKLSLVCAFAELDLNLRYKNIESFLEWLFISFSNRFIFQTKKGDFS
                     YSFVLRYYDGNIVYDELGKPVLKHVDCGDNLYFINANKELCDEQRKPLNVGEFYNKLV
                     EYMFKNQDKIIFDNKIEISPVIKTQIPSQTKINKDYEQNYLEYKKNQNKLYNANIDKF
                     TSKLEQILKAKK"
     gene            complement(17733..18002)
                     /locus_tag="R2H98_000218"
     CDS             complement(17733..18002)
                     /locus_tag="R2H98_000218"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023148.1"
                     /translation="MKFNPPSKEDLIKAIDEFNAKNSCSIPYFIADSFINYYKQDDGR
                     WLMANKKPLKCWKRALNSTWLPKLANKYKNKDKQKALASWLEEEF"
     gene            complement(17999..18961)
                     /locus_tag="R2H98_000219"
     CDS             complement(17999..18961)
                     /locus_tag="R2H98_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023149.1"
                     /translation="MNLDFLNEFKLKNKDLNEKLEFLIPDFLVKKAITIIYANGGSGK
                     SYLSAAISKTLCKDTRVKSIVYVDMDNPLNVLNERGFGELILNESKFTYIHRSSLKTS
                     AYELLEMIEGKGVAGSYEGVLFVLDSLRNFADIDNDTKMMSLMSLLMNLRECGATIMA
                     LHHSTKDGRAFKGSNHIRNSSDCMYFLQKVANLEQGFEVLLSVQKERAGIKDQAFFIN
                     TKTLNIKNTDLQNAKISDKEEAFIDKVLKLLNEKSLSTSEILSALDVSRSDNFSRNTL
                     EKFKGVFWESELGGENGRTFVWKSLKADNKNSNDKELSLFGDEL"
     gene            complement(19070..19456)
                     /locus_tag="R2H98_000220"
     CDS             complement(19070..19456)
                     /locus_tag="R2H98_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023150.1"
                     /translation="MKLQDFDFRVWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKE
                     DCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSL
                     IYLVEDEGYTIETIGNIHENPELLKC"
     gene            complement(19453..19725)
                     /locus_tag="R2H98_000221"
     CDS             complement(19453..19725)
                     /locus_tag="R2H98_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023151.1"
                     /translation="MYVNVSIDASDLEDIDAHDLAELFEDLSTKEQEEFFGIIHKDIK
                     PLERIRAILSNLSNDEALKLLKELNNEFKSDEEWQKTIKSINGGNK"
     gene            complement(19789..19968)
                     /locus_tag="R2H98_000222"
     CDS             complement(19789..19968)
                     /locus_tag="R2H98_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023152.1"
                     /translation="MRELSLATFKLLNSVFKTKTAHFNGFLELDFKNKPKLKKQSFKR
                     KKKMTSKQKIRLKRI"
     gene            complement(19965..20450)
                     /locus_tag="R2H98_000223"
     CDS             complement(19965..20450)
                     /locus_tag="R2H98_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host-nuclease inhibitor Gam family protein"
                     /protein_id="HEE9023153.1"
                     /translation="MQINNLEDVNLALKKVAELSVKIEKINGEVTLACNEIKEARAGE
                     IKVLSDELKYIEQCITTFCENNKHEFAEKRSKEFTFGKIGYRLSKSVSLPRVKEKLEN
                     LIKALKSYGLNDCITYKEELNKDAIAELEDSTLVKLGLKRVVKDNFRIEPKIESLEIE
                     K"
     gene            complement(20557..20898)
                     /locus_tag="R2H98_000224"
     CDS             complement(20557..20898)
                     /locus_tag="R2H98_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023154.1"
                     /translation="MALVYVASPYKALVVRESQRKAQAISIAQQECLKIMRECEGFVP
                     VSPILQFSYLDENKHRDKALQMGLELLKACDYIYLSKHKDAKYSQGMQEELALAKKLG
                     IKELVLELPLQ"
     gene            complement(20955..21140)
                     /locus_tag="R2H98_000225"
     CDS             complement(20955..21140)
                     /locus_tag="R2H98_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023155.1"
                     /translation="MIPMIKGEKADYSASLFEIKGVSIIYKESGVFVDVLKGIYPDYI
                     AKKIIRFHLGKKLNKSA"
     gene            complement(21137..21328)
                     /locus_tag="R2H98_000226"
     CDS             complement(21137..21328)
                     /locus_tag="R2H98_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase subunit sigma-70"
                     /protein_id="HEE9023156.1"
                     /translation="MSFEEIAKELNLSVTRVHQIYTEALRKLKSPKNKDKWMAIFETI
                     DLIKKEKAKKENLIQGEKK"
     gene            complement(21331..22254)
                     /locus_tag="R2H98_000227"
     CDS             complement(21331..22254)
                     /locus_tag="R2H98_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9023157.1"
                     /translation="MQLVELTKKFLSTQNISQNNLSDRLGINKSYMVGYMKEGSSYKY
                     ASKVEPLLEKYIKSFVEEKSVKELQTPFIATKDAKAINVTIESAMSNREMGVIIGEAG
                     TGKSRAIKEYAAKNGTRVVLFEATTETSKRMLLVGLENKLNVCFKGSLDDKIRGIASE
                     LARTSKVLIIDESEHLPFRALECLRRIYDFSNTALILVGTRKLKNNLTGIGRNDYNEY
                     GQLSSRIGAKWELKGLCYQNKEGLKDEDLKTLCNHFDVEEKKAIDLVFNLARGNFRKS
                     EKLLKRACEFADGKAVELKHIEAAASFLMLG"
     gene            complement(22424..24499)
                     /locus_tag="R2H98_000228"
     CDS             complement(22424..24499)
                     /locus_tag="R2H98_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEE9023158.1"
                     /translation="MSYFLETKEAAQTFNVSTGALRLAVSRNSNKYEWLKVDNEKGGR
                     GGKKLLFKISKDELLTAFNKQLISKNTLIYDEKMQKVKLSEIITTDNLKTANNSLKTS
                     NLNLTESKMNDDLAVLNLKFENLSDEIKNNAREKLKALKQVEKYIEGGLKQKRALEIC
                     GISKIEIFRIRKAYKENGILGLIDTRGLHRKDKTKLSTWMQEYALREYRTFAAGGFNF
                     TELWWQIHKEAATKENYDFIGFDLGEVKPLFSVKTLQNFIKNYYKDKPLEHCIITQGL
                     DRAKSKFLPAQGNQRELYDMKNMCWQIDSSPADVIVRDDETLEPFRPHILSVVDVFSG
                     MGVATLVGKSNSLSLTRLLWKAIDKFGKPDMIKGDNGKDYLSKDFQSLLDGLNITYDA
                     AIAYAGEQKALVERRFGTLQHAGISKMHGHIGNSLAKREMIEQKTPKKERKAKDEYGF
                     AKKTNQKLLHTFSEACELLEAEVIKWNMSKVRRKKGVKTPLELWNSCDRAIVKISYEE
                     FLFNAGNKELRVVGKKGINFESRVYKSALMPSVGTRVKCVQNIDNIKELFIYDLSGNF
                     LCLALDESIAKLSKESYKMLKKGYESEVKAIKEVLKKDEIAAFTKLNIKQDLQDLQSA
                     FENSLVEAKEVHQKSLAKETLKTQRELEEIKNNANADELILNAKKEINNDESEFDMEA
                     FVEKKYFAG"
     gene            complement(24496..24696)
                     /locus_tag="R2H98_000229"
     CDS             complement(24496..24696)
                     /locus_tag="R2H98_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023159.1"
                     /translation="MLKQYFEDNGINLKKFAQKHNLHYMSLFRVVNGLYSEKYKAKTN
                     TKAVYEKLFELKIIDEMPRACS"
     gene            24846..25520
                     /locus_tag="R2H98_000230"
     CDS             24846..25520
                     /locus_tag="R2H98_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEE9023160.1"
                     /translation="MYKTTDILNRVYAILNITDDKEFCGIYEIKPNTLSTWRTRNTIP
                     YELLLKISKEQNISLDSIFFGKMRINDDNLQLRYYTDVAAAAGYGAINSKLEYTEIVI
                     SKKFACEALGLPPLTRLDIIKVIGDSMEPFIHNGDVIAVDVSKNKLELVKNGDIVVIN
                     LDGEIYCKKLLKQPFVNEIVLSSMNSFYKDIVVNIDQISCAEIIGVVCKAISIKTFEN
                     AIIKYE"
     gene            25520..26218
                     /locus_tag="R2H98_000231"
     CDS             25520..26218
                     /locus_tag="R2H98_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002917944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023161.1"
                     /translation="MLYFIIAILIIIIALFIYSGFKTELKLKKIADGALTKQDLKEIE
                     VISKYYEISLIEAAKIHYGKAIITEEMIERLERPYRELYEQYKKLSINEQGKFLHNLL
                     LNNQDEYAEAIRFIQIAEESVNIALKSKNKDIAESRRKLALEIEQKIQKGYPKAYGLI
                     IDIIQLLEDNYDVNLFENQCIKYYEEAQKLKTIKSKQKRIDYINDLIKEAEINPKIDE
                     KFVNFWKNKVKEIQ"
     gene            complement(26309..26455)
                     /locus_tag="R2H98_000232"
                     /pseudo
     CDS             complement(26309..26455)
                     /locus_tag="R2H98_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
     gene            26883..28659
                     /locus_tag="R2H98_000233"
                     /pseudo
     CDS             26883..28659
                     /locus_tag="R2H98_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         9979 a         4419 c         4310 g         9951 t
ORIGIN      
        1 tatgtatata ctaatactag cttgattgac tacattatcg atttgttgaa tttttattgc
       61 aataggtgtt tttcctcctg ttgtatttgt gtatatcaca ttattagaca tagaatgaga
      121 tttaagtaaa gaagttccat caagataggt attaaaccct atcaatgcta aaagttctgg
      181 atcttttaaa ttgagttgat tttcttttaa ggtagctaaa tttacaaatt gattgtcatt
      241 tgtagctttt atagagcttg taggtagttt ggtaaagtct ttagctcctg taatggtttg
      301 attagtagct aaagtaacat atttggcaat ttctgtatta aatttatttt ctaaaagata
      361 tttagcaaac tcatcccata cttttttaaa ctctgcatca tatttttgcg ttaaagcatc
      421 aattttaaga ttaagttcca ctttaatagc atccacataa tcacgacttg ccataatcac
      481 actaggatct agttttaaaa taacttcctc tgcattagaa agctccatga caatttttat
      541 cataagttct ttagcgctgc cttcttttaa gataggttta taagtgcgtg ggacatttcc
      601 aactgcaagc aaatctcctg cttcatcata aacgcctact gcattaactt caaacccgcc
      661 cacatcgctt ggcacatgac acattaaatt cacatagttt ggattgcttt catccacgct
      721 tttgctacta atattagctt catatacaat ctcttctaag ctttgcattt cttcactggg
      781 caaaataact tttgaactta atttaaagct ttttaaattg ataccatttc cacttgctct
      841 tgcggcaata aatttagcaa tgccaatttt tgttagtatg gtatagtatt cactttttgc
      901 cattaataca ctcctttaaa atcaatatta gttcttgtta tttcacacat aaaaacaccc
      961 attgcattta aacttggttt ctgattgttt tcaatttgcg tggtttgaaa aggtaagatt
     1021 tctatagttt ctccacttat ttgtgcatta gcattaaaac tatcattttt acttttaatc
     1081 tctatttcaa ttgcttctaa aacgcttcta acatttttaa aatcataaat tagtctttct
     1141 aaagtattaa gcgttctttc atcaaagcta acattagttg tgcttacttt aactttaaaa
     1201 aaataaggct ttccaccata attaaaccac tctttaacca ctgcagtagg aaatacggct
     1261 cttaaagctt cttttatagc ccaagttgtg ccgttgtatc tgtctaaaag caaggcttta
     1321 gatattagct ttcttgcttc tttttcattt aagccatcaa tacttacatc ataagcattg
     1381 gctaaaattg gcaataatct ttcatcgcaa tttagagcta gatttgtgat actagctaaa
     1441 tttaaatctt caaatcttgt tttagcactt aaatcaatgg ctttgctttg ttttggatgg
     1501 tggtttagta ttagtgtatt catagcaccg ccttttcata actaagtgaa aagctaaggg
     1561 ttgcaaactc atcatcagct attattatat tttctaaggg caagtctttt aattcttgct
     1621 cttcttcatt tatgattttt tctttaatgc ttaaaatttc gcttttataa actccgtctt
     1681 gatgaagaca tttataaata aatcccagtg ctaaatccac acttaaatca aagtcctttt
     1741 gcaaagcatt aatcttctgg cttatttcat tagcacggct taattctaaa agcaaaagtt
     1801 tggcttctac gataaactct ctttttttag ctaattctac atttacttca tcagttaaag
     1861 gtcttcgctc atctgcactt aaatactctt taaccacatc aacgcttaat tcatcttcac
     1921 ttttaatgat aactcttact tttcctgctc cattgtttaa agcttttatg gaagctactt
     1981 ttgcacttgc gcttaaagcg tgatagatat agcctttttc acttcctgcg gttgaaaagc
     2041 gatgtacact cattacagcc ctttctctta aggcttcatc actttcttca ctggctccac
     2101 ctttgaaaaa ttctagttgt ttaatcttag ctataaaagg cagtggggtt tgtaaaaact
     2161 cggttttact ttctttgctt tgaataaatt catcaagttc taaaatacct tgtgctttac
     2221 tttgcccttt tttaatcacc acttcttctt ttaaagtggc aaggtctgct ttttcatttg
     2281 aaaaaattgc accttttggg atgatgacat cataggtaag taaagtattt aattcaaact
     2341 ctactttagc tgtgggctta acccctttaa gcctttgtat caaatagcca ttagctacta
     2401 cattatctaa atcacttccc tttgcataat gaagataagt tgcttttata ctctcattaa
     2461 ttcttgctct aattatcatt tctctataag ctaaagcttc taaaatggct ttaaaagggt
     2521 cagattctaa aagctctaca ttatctttta aaaagctttt aaaaagttct tcataggctt
     2581 ttaaaagctt ttcataatca agctcttcta tgatttgtgg ataagggata tcctttaaaa
     2641 agctttgttt aaaatagcta tcatttgcac ttaaaagctc actcatttgc ctagctccat
     2701 tgttaaatcc ccataatttt caaaaagcaa ggtaatgctt aatttattgt ctttacactc
     2761 attaagtctc acacctttta gctttactct tttttcccac tttgaaattg cttctgcagt
     2821 gtatctagta agctttatct taaaatcatc atcgattttt ctatctatga gtgtataaag
     2881 taaagaacca tactctggtc tcattactct tgagcctaaa ggagtgatta aaatgtcttt
     2941 gatactttct tcgatgctta ccatgtaatt cattttaaac ctttgtaaaa ttcaaaaatg
     3001 ttttctagca tttgcgaaaa tcctaaaaac ataaaagcta taaaaaagcc tataaaaatg
     3061 cttttgataa aaaagtttag gtttaaaaaa gcataaaatg cccccatgca aaagagcata
     3121 aaaaagacta atgaaaataa aagcaaaaat aattctttca tagtttttcc tatcttggcg
     3181 aagctgtggc accacaagta caagaatggg tatgatttgt taaatcacct ttgctatcgc
     3241 ttatatttcc gctaacttgt aaattgccta ttaagtttaa atttcctttt atgctaaaag
     3301 taccacttgc cccaccttcg ccacttgtag aaattgctcc tgcaatttga gtattaccat
     3361 ttaaattaat acttggagca ttaagcgtta tggtattagc gtttgtagta tgatttttag
     3421 tatttaaggt gttgttttgg ttatgggtgg ttttatctac acaagcgata tttatatttt
     3481 taaccacatc aagttttaaa gtgctactct tagagttgta ttctaaatgc gttccatctt
     3541 caaaatctat attaaaagta ttttcatctg tgttttttgc tctatgtttt tcttggtaaa
     3601 gaccacgcaa aataactcca ctatttaaat ccccacgcac aggtatgact aatacttgct
     3661 ctcctattct taaaggagaa aagctcactg cataagaatt agctagactt tgaaaaacac
     3721 ttaaaaaatc cgttaccata tctccaatag caaccttagc tttaccttct ttaatgtcgc
     3781 aaatgatgcc aagttcgttc attatagttt ttccattttt ttattaatta acttttctac
     3841 aagttgctca attttaagca atgcatctgt ccccatataa gctgcaaaac cacccactgc
     3901 aacgctaagc tttatgccaa aattaagata atttacaatt tcaaaaacta gatatgccac
     3961 aaacatagag cctagcatac cttttaaaaa gagtgtaaat ttacctttta aattaagagc
     4021 tttgcttaat ttattttttg ttacaattcc tacaagtcca gctataaagc ttactatcat
     4081 taaaaccata tatacaaata tatcttctaa tttcattgct agttccttgt aaaaatttca
     4141 aataaatata ataaagctaa tgcaaaagtt gaaaacaaaa gagctataag aagatctttt
     4201 gcaatgcttt tttgatttat cattttatta ttttctttca tctttctctc ctgtgcaaag
     4261 cttggctata ttttcaactt ctaagtaata tttagagatt tctttagcac tttctaagtc
     4321 ttttttgtct aaaggcttta aaggaagttt taaagggcat ttaataggaa ctttaacttc
     4381 tttgatttca gttttaatca aaatatcttt agaagcacaa gcgcttaaaa aaacaaaagg
     4441 tataattaat aggaaaattc tcattttatc attcactttt ttgctcctaa aatattaaat
     4501 aattctttat aagctttaag ttcactctca cagcttttat ctttaataaa aaccttatcc
     4561 acttttaaaa cttcttttaa agtctctttg ggctttaaat caagttttaa tttatcaata
     4621 gctttatttt gctgggctaa tttatcttta aaaacattga tttcattgtt aaaatgcaaa
     4681 gctttaagtt ttagattttc attttctaaa gctaaagcat tgttttttga atataaaaaa
     4741 ccacaaagag caattagaac aaaaaaagct atttttgaag gacttaaaaa ccttgataaa
     4801 ataaaactaa acacaatctt ttccttatgg ataagtccat cttgcttttt tgcctctagt
     4861 gtctaaatgt acaaacccag cataaggatc attaaaatta tgttttatag caatccctaa
     4921 acctctttcg ccataggtga ttaaaacata ttgatgaact tcttctgttt taactccttt
     4981 aaccacaaag tccgctgcac ttcctatagc gtgttggctt ttaggggctc caccaacctc
     5041 tgcattatgc tctttgcagc gatatccact atttataata acaggagcat tgtaatgttc
     5101 tctgatttca caaagaatgt ctataagctc atcacttggc acattttgag gcaattcaca
     5161 tttgccgcat ttacatttaa attcgctttc tttaaaataa gggttatttt tcattttcac
     5221 tcctttaaaa tgtcgtaagt ttagttaaaa agctgaccca aaaactagaa aaattttgtg
     5281 ctaaaactct ttgaaaaaat aatttgcttg attaaaaaaa gaactcattt taaaattgcc
     5341 gctaattttt aaaggatgaa aaatgcttaa aagttttgaa aatgagcttt tagaactatt
     5401 aaaagatttt aaagtaagaa tgtatttagg cgagtttgaa gacacccaaa acatagcaag
     5461 ttgtattaat aatttagatg cttcgctttt gcttgatttt gaaggagaaa gttataaaga
     5521 tttagaaaat aaagtgggaa cttggaaact ttatatttta acccatacaa aatcaaaagc
     5581 tcctaaacac agaattgatg ctaagcataa attatttgat gcaatagaag ctgttgataa
     5641 agtgctttta aatgcagaac ctagcaatgg ttttagaata gagcttaaag atcttaaaaa
     5701 ggtttacgaa ggaataagcg atcatggcta tttaagcatt tatgcaagaa ctttgcaaag
     5761 tagcttttta ccaaaagatg attttttaag gatttaaaat gctttttatc aataaagaaa
     5821 atttagtcga agttagcaat gataagccca taaaagtggc aattaagggt gagtggaaag
     5881 ggcataataa tggcaggttt aaggttgatg ataaagattt aaactcaatg attgataatt
     5941 ttaatcaaaa aaagattgat ttggttattg actatgagca tcaaagctta aaaaatgaaa
     6001 aagcacctgc tgcaggttgg attaaagagc tttatttgga aaatgatgcc ttaatggcta
     6061 aggctgagtt taacgaagag gctaaaaaat atatagcaaa taagcaatac cgctatttat
     6121 cccctgtgtt tgaatttaat tcaaaagaca ataaaagtgg agaactagta agagctaagc
     6181 ttcactcagt cgcactaact aatacaccat ttattgatga gctaggcgaa ctcattgcta
     6241 acaaaaataa tattcatcaa aacaaaggag agaaaatgga tgaaaaaatc aaagagctag
     6301 aatctcagat tatagcttta aaaaatgaaa atagctcact cgctttacaa aatgaagctt
     6361 taaaaaaaca aaacgaagaa agcgttaaaa acttagcaag ctctttagtt gataatgctt
     6421 taaatagcgg aaaaattgct aattcccaaa aagaatgggc gctaatgtat gcttgtaagg
     6481 atttagaagg ctttaaaagc tttttagata ccaagaatga tcaagtgcaa gttccaaaaa
     6541 ataatgtttt tgcaaataaa aacacagcaa aaactaatga gtttgatgtt gtgaaaatga
     6601 tgttagggga ttaaaaatgg ctaaagctaa aaaagaaacc caaaacctag aaaatgaaga
     6661 cttggaaact ggagacttac ctaaagcttt gtctttagaa gatgagaacc tagtcaatga
     6721 agaagctgtg agtgaaaatg aaaccactaa ggaatttata aatgaaaaag gagaagaaat
     6781 gccatcaaag gtcacaccaa aaagcttaag caatgatcct ttaattgcta tgccaaaaag
     6841 ccttgaaagt tttatcaata aagatttgtt ttcaattaat gcgaaaatag atcttgaaac
     6901 taatggaagc ttagctcttg gaacgctttt aatcagcgaa gattttggag aaagctttaa
     6961 aaaatgtcca aatgaagata ttagtgcaaa agaaaatgtt aaattagcaa tgcttaaaga
     7021 tcacgctctt agttctggaa tttatggggt tttattagca ggagaaatca atttaaaagg
     7081 cgttcatgta agtgcggtta aaaaggcttt tatgcaaaat ttaattatta atactaagga
     7141 gtaaaaatgg atttagagca acttttggaa cttttttcaa gtacaaaaat aactgaagtt
     7201 attaatcaaa ccaaagcttc acctcgcttt gtaagtgata ctttttttaa ggataaaatc
     7261 ccaagtttag agagcaccgt aagggttgaa attataaaag gtgctggaat tgttttaaat
     7321 agcatttcag ataatgggga acattcttta gaaaatacta aagacgctta tattttaaat
     7381 atacctttac cacgctttgc attagcaaaa agaatcagtg cgagtgagat taattcttta
     7441 aggtctttag cattgcaaga agctcaggct aaaagcttaa gtggagctct tggggttttg
     7501 gttaaagaaa tgaaagaaag ctttaatact acgcttgaat atatggcaaa tggtgcttta
     7561 tttggcaaga ttttagatgg caaaggaaat gtgctttttg attttggaag tgcaagtaag
     7621 aaagctatta gtgttaaaaa agatgggagt gtgactttag acagtgtttg tgatgcgatt
     7681 gattcagcaa ttattgatga atttggaaca agtgctgatt atgaagtgct ttgtggaaat
     7741 gaactttttg cggctatttc taacttggca ttaagcgaag atctttataa aaatcatctt
     7801 gcaagtaggg atgagaaaga taagtcctta attttatatg gcaccaaata tcgccgttat
     7861 agtgcaaaat ataaaaatac aaatggaaaa agcgttgaat ttttaaaagg cactgagggt
     7921 atggttgtgc caaaggataa ttctaatcgc atttattata caagagcaaa tcatactgat
     7981 gctttaggaa aagcaccaag tttaatgttt gtttctaagc ctgagatttt acctcgtggg
     8041 gctggaattg aaattgtagg cgaaatgaga gccatgccag tttgcaccag accaaatgga
     8101 cttattaagc ttgttttaga gtaaaacgca caattttagc tttaaaggca aaaaatgctt
     8161 ttaaagctaa aaagatatta gaaaaagatt ttaaacgatt ttaaccatat tttaaccaca
     8221 ttaaaaaagg tttttttaaa tgaattatca agacatttta gaagaaaagc ttatcacaga
     8281 aactaaaacg cattttttta tgatagatga aaaggattta atcaaagaat taagcgttca
     8341 tgccatagca gagcttagcg atttaaatgc tgacggggtt tgtgataaag aagtgattga
     8401 tgatgctatt aatgatgcac aaagttatat tgcaagtttt ataaagatac ctaaaaaccc
     8461 aactcctctt ttaaaagata tctgtgtaaa gcttacaatt atggaattaa aacgccgaaa
     8521 tgattttcca aaagaaagct tagaagagat tagagagtgg gctaatgatt tacttttaaa
     8581 aatggcaaat aaaaaaattc caactgaaat caacgaagat aactttattc cacaaaacaa
     8641 atttagagcg tttaaaatta aaagaaaaag aatggattta aggagattaa atggctaaaa
     8701 atttaacttc caccacaaag cctaagatgg caaaggtcgg gtgtggcctt caggtgggtg
     8761 cagagagtga aactcctgct cgtaaggata aatttacttc atccgcgaag tctcaaaaca
     8821 acttaaaaga tttagcaaaa gaactttata ttgcaggttt tgatatattt aaaattgcaa
     8881 aaattttaaa ccgcaatgaa aaaacgatta gaaactataa agccaaagat ggcgattggg
     8941 ataagcaaaa agctaatctt ttaacttcaa aaataaaaga taaagaaagt gcctcattat
     9001 atgaaagttt tactgagcaa atgttttgtg cgattgaaaa tataaatact gatgaaaaaa
     9061 tgaatgcaga aaagaaaact gaagccattg caaggatagg cgatagcttt tcaaaaatga
     9121 gaaaggttgc aagattagaa gatccaagta gctatcgttt aaatgttgct aaaaaagtgg
     9181 ttgaaattat cataagtcat ttaaaaaatg ataaagattg cgtagcaaaa cttgtatcac
     9241 ttttagaaag tggagtgata gaaaaagaaa ttttagcaat ggatatttaa tgcttttttc
     9301 caaagaagaa ctcgatgagt ttttaatctc aaacgaacaa aagcacgaaa acactccaaa
     9361 tgaactaaaa ggtgctatgc aaagaaaaga ctttttagaa tggatggatg agctaaaaaa
     9421 tgaattaaaa actcaatttt tgcatgaaag ccatttagat cctactttaa aagaagaaag
     9481 aattaaaaga gcgagtgtgg attttgatta ttttgcaaga acttattttc cgcattattt
     9541 taccattaaa ggagaatgtg gcttacattt gcacttaaat gaagttttta caaaaatcgc
     9601 acttaaaaaa gaaagtaaag gtgaaaaaca cgccatagct gcaccaagag ctcatggtaa
     9661 atccacctac acttcacaac tctttccttt gtggtgctta gtttttaatt ataaaagctt
     9721 tatagtagag atttcagatg cggtcgaact tatggaagga atgcttgaag ctattaaagc
     9781 agagcttgaa gataatccgc atttaaagct tgattttccc gaagtagtag gaattggcaa
     9841 gacttggcgc gtaggagagt ttgtaagtaa taatggcgta aagattaaag cctttggcag
     9901 tggtaaaaga cttcgtgggg ttagatatgg ggttaaaaga cctgatttag ttattttaga
     9961 tgatttagaa aatgatacta atgtcaggag taaagatcaa agggataaat tagaagattg
    10021 ggtggatgaa gcggttttaa acttagggag tgcggatgga agcttagatg tgctttatat
    10081 tggaaccatt ttacataatg atagcgtgtt atctagaaaa ttaaagcttg gtttttggaa
    10141 tcctaaagtc ttccgttcca tcgaagagtt tccacaaagg cttgatttat gggatgaata
    10201 cgccatgctt tatagaaatg ctgattttaa taccgctcat caattttatt taaaaaataa
    10261 agttttaatg gataaagggg caaaagttct ttggaaagaa gccaaaagct tagaagattt
    10321 aatgaagtta agggctgaaa atctaaaagc ttttaataaa gagcaactca ataatccaag
    10381 aagtgaaaat caaatcttta gccttgatgg cattaatttt tatgatgatt tacctgccat
    10441 taatcagtat tatatgtata ttgatccagc aggagaaaaa gcaaaaagtg actttactgc
    10501 gattaccatt attggcaaag gtgcaaaggg tttttatgta gcagaaagca tcgtaaaaat
    10561 cttaaaagca caaagcatta taaaaaccat ttttaatctt caaaagattt ataaatgtcg
    10621 cttgattgaa attgaaacta atggcggtca atttttctta aaaaaatggt tacaagaaaa
    10681 aagcttagaa agtggagttt ttttgccttt gcgtggtaaa aataatagcg ttagcaagtt
    10741 tgaacgcatt gagagtttaa gccttgcttt tgaaaatgaa gagctttttt tacataaaag
    10801 ccaaactatg cttataaatc aacttttaga atttccagaa gggaaaaatg atgatgcacc
    10861 tgatagctta gcaggagcat ttttattagc aagaactaaa agtagcatta aaagaagaaa
    10921 gcatcatttt aactctgttt caagaataag gcgtttttaa aggaaaaata tgaaaaaaga
    10981 aatcaaatcc aaaagagaag tgatattaaa aaacaatagt cttataaaca ctcttataaa
    11041 ctcaagctat ttaaatgtgc ttaaaatcag cgagaacgat caaaaaatga tttttaaaga
    11101 tctaagcttt actcaagctc atcaatcacg aaggagtgtg attttagcaa aagagcttca
    11161 aatcgtttgt gaaaacgaaa aaataaaaga aagctttgag tatcttttca atcctgattt
    11221 attaagtcaa atcttagaaa cctatcttta tgggcttaat gtatttgaag ttaattacaa
    11281 gttaaaagat ggtttttact atccaatctt aaaacaaaga gattttagaa attttggctt
    11341 taatgaaaat gatgagttag tttataatag caatggttgc gaagaaattg tggaagataa
    11401 aaaagcaatt tatggacttt ttggctctaa ttttttattt aaaaatggcg atgccttatt
    11461 aacaaagctt tattttccag taaagcttaa aaatgcaagt ttaaagtttt ggatggagtt
    11521 tttagaaaga tttggttctc cttgggcagt tgcaaaaaca gatagcgatc ctgatgcact
    11581 agcttctgaa attcatcaaa tgttaaatgg cgatagtgcg gtcattgata aagaagaaga
    11641 gcttgattta atccagccaa aggctaaggc aaattataat gaaataatag attacttaga
    11701 taatcaaata agaagcgtgg ttttaggagc taatttaagt tctcaagtaa gcggaggttc
    11761 tttagcagcg gctgaatcac ataatcaaat aagaaaagat ttagccgccc aagatggaca
    11821 aatcgttctt tttattttaa atcgtgccat taagtttttc aaagaaatca atcattttaa
    11881 agatgaactc tatgtgcagt tttttagcga agcagaacca aaaagtgagc tttgcgaaag
    11941 ggacttaaaa ctttttaaca tgggcttttg ctttgatgaa gaatacatta aaaacactta
    12001 taatgtagag ggtgagctta taagagagac tttagaaaaa aaagacttta aagatttaga
    12061 aaatgataaa aaagtctttg aaaacaaagt aaagttagag agctttgaag aagattttat
    12121 tgacaaagga ttagaacaaa aagaatactt aaaagtcgat gagagcatgt caaagttttt
    12181 tcaagagcaa tttgaaagca ttgtaaaaga ttgtaaagat tttaacgagg cactcaataa
    12241 acttaaagaa aatttttcta gtttagagca aagcgagttt gaaaaacatc tttttatagc
    12301 tttaaataat tccagtattt taggatactt ggaggattaa aatgacaggt gcaaaaatag
    12361 gatttttttc agaacctact aaagctgttg attttttaaa aaataaaaag ccagagctta
    12421 gttttgatta tgatgaactt tcatattcaa cccataaaaa agtctttact attgctaagc
    12481 ttatggatga aagcttgtta aaagatatgc aagatacttt agtaaatgct attaaaaatg
    12541 gggataaatt tagcacttgg agtaagattg cagaggagaa attaaaagct aaaggttggt
    12601 ggggttcaaa ggaagttata aaccctaaaa caggtgaagt taaaaaaact cattttaata
    12661 gtgcaagatt aaaaaaaatc tttgaggaaa actcaagaaa agctaaagct aaagctatct
    12721 atgaaaatca aatgaaaagc actaaacctt attttaaata ctgcacccaa aaagattctt
    12781 tggttaggga caaacacaga gcctttgatg gcatagtttt acataaagat gatccttttt
    12841 gggatagtca ttatccgcat gtaactatgc atgattatgg ttgcaggtgt tatgttttag
    12901 aagtaggtga aagtgaagtt aaaggcctaa aaataccacc atcaaatgcc aaagaaagcg
    12961 aatttaatgg ctttaatgat gaagagcttt tagatgagct ttataaacaa aaaaacactg
    13021 aagtcattca aaactttata aagcttgata tgttaagtgc agcggctaaa aaaacaaaag
    13081 aagttaaaag cttcactcat caaaaagaac tgtacacttg gcaaaaaagc ttagatgata
    13141 tggtggatga agtcatcatt aaagataatc aaaaatatcc tatcaatttc atacaagtag
    13201 gtaaaatgga taaaagcacc aaagagtttt tagaaaaact taataaaaaa gacttagaag
    13261 acttatactt tacactgagc aaaaacaatc ttttacacgc aagtcctaaa agaaaggcaa
    13321 gttataatca ggctttaagc gcggatgaaa tcaagcaaat tgttaaagtt ttagatgaag
    13381 caaaagaagt ttattgggat aatgcaaata attctttatt gtatttcttt gaagataaaa
    13441 aagatgctag tcgtatcaat aaaattgtaa ttacccctga ttataagcta aagaagtttg
    13501 gtaaaaccaa tgcaatagtt acattaggaa aagtagaagc gattaataaa gataataaga
    13561 catatattaa gatcagataa ggcggtgaga cttgcactca caatacatac cccaattaat
    13621 ttggactatc ctactactac attttaggta tcaaccttat ctaattaaga taattttagc
    13681 ttgatgaaac taaaaaggag tttaaatggt tttagcttta ggagaatttg agtttaaagc
    13741 tttaaatttt gataatttag aaagaagctt agaatataac atacaaagtc aaaataggct
    13801 taataatcat aatgctttat ttgcaagttc taaagaaagc gaaaagatta aaatacaagg
    13861 caaaacttta cctttaaaag gggatagaaa tacttattta gataagcttg agaatatggc
    13921 aaaagaacaa agatctttta tcttaacagg agctaatgga aagtattatg gtaaatttgt
    13981 gattttatcc ttaaatgaaa acagaagtgc atttgtagat ggaagtggct ttgtagcaca
    14041 aagctttagc atggatttag aaagggattt tgatgagtaa gatttacata gctaaaaaca
    14101 acgagaggct tgatagtata gtctataagc attatgggac acttttgtat tttaatcaag
    14161 ttttattagc caatccaaga ttagagcctc ttttaaaaac aggggataaa gtgattttac
    14221 ctagtattaa aatcaaagaa agcaaggaaa aggctttatg gtaagaaaac ctaagtttaa
    14281 acttattgcc aaaggtgagg atatcacaga aaaactttct aaaaatctta ttaacattag
    14341 ttatgaagat aaagaaaaag ctgaaagtga tgagataagt ttaagtgttt ttgggcttta
    14401 ttccaagcca ctttttgggg atagtttaga gctttggctt ggctttgaaa agctttataa
    14461 atgtggaagc tttagtgtga atgtagtgag taaaaactat acttcaaata ctactgaagt
    14521 tagagcaagt gctattaatt ttagtggaaa aggcagcgtt aatataaaag agaaaaagac
    14581 aagaagcttt gaaaacacta ctctttttac catagcaaga aaaatcgcaa atgaaaacaa
    14641 tctaaaaatc aaaacaagtg gagaggatca aaatatagta agtattttac aaaataatca
    14701 aagtaattta gaattcttat atagtatatg ctttgattat ggttttattt gctgtgtaaa
    14761 agaaaatact ttaatcatta ctccaaaaga tggtaagatt ggcgataatg ctgctaatat
    14821 cacaagcaag aatgaaaatt tacctttatt tgaaatagct ttaaaagaat gtatttcatt
    14881 agaaatttca gaaagtgcta gaaatgaata tagtgccgta atagcagaat ggcaagatat
    14941 aaatgaggca aagataaaaa gcataaaagt aggaagtggg gagaatatat ataaaatgca
    15001 aatctcacaa ccaaaaaatg ataatgaagc ttttaaaaaa gcacaagcaa aactcaatga
    15061 gcttcaaaaa ggtggattaa atggaagatg tgagcttatt gggcgtgaaa taagagcagg
    15121 tggaaaactt aagattaaag atattaatat ggatcattat gaatttagta ttaaaagcgt
    15181 gagtcatagt tttaatgacc aagcttatat aattagcgtg gagtttgaga gctaaaacaa
    15241 acttggttct aaattttctc tcaattcttt agtgattaaa tacaccgcat ttaaacttaa
    15301 atcgtatttt ttagcacatt ccacacttgc atttttagtg cttattccct gttttatgag
    15361 tgttttaaaa tcctgtttta attcttcatc tctaagtaag gttttatagc ttggtatgta
    15421 aatatttgca ccgccaaatt cttttaagat ttctcgtttg tcgttatttt tcacaaaatc
    15481 aataaaatat tcaaagtatt cgttattgct aagcaatgct agtcctattt gagtgttttt
    15541 gcaaattata gcaaaaaagt taaattttat ttagtagggt ataattttaa aaaataaaaa
    15601 ggagaataaa tgaaaaaaat aataagcgtt ttaatacttg ctttaagctt attaaatgct
    15661 aaaagttttg aagaaagcaa aaaagaatta gtaaaatttt ataatgatct agggagctct
    15721 tactggtatg atttttattg tcaagcacct tttaaggtta ataaaaaagg aaaatatatt
    15781 agttttgaag tgattaaaag tgatttatat gctcctagaa acgaatacac caaaaaagga
    15841 aaaattaacc aaagaatcaa acgcatagaa tgggagcata ttatgcccgc ccaaaacttt
    15901 ggaaagcatt taccttgctg gaaagaaggt ggcagaaaag cttgtaaaaa tgatccaact
    15961 tttgcaaaaa tggaagccga taaacaaaac ctagttccag ccataggaga gataaatggg
    16021 gatagaagca attttagata tgctgaggct cctactaatt taaaatatac tcaatatgga
    16081 aattgtaagg tttatactga ttttaaagca aaaagatttt atcctgcaaa ttattctaaa
    16141 ggctggattg caagaagcta tttatatatg agcaaaactt ataatatcag attatccgac
    16201 caagaaagaa aacttatgga ggcttgggat aaacaatacc ctatggatga gaaagaaaaa
    16261 agaattagag cattactcta attctttgca aactttagcc acaatttcat ctatatcaat
    16321 aaccaagctt ttatcttctt cctcaaaact ctcatcaagt ttttctctga tattacaaac
    16381 cacattaagc aaaatcccaa aatctttatc agttttaatc tgatgagtga ttccattatg
    16441 cattatttca aggcttgttc tttttgcagc aaaggcaatt tgtgagtgtt tttctatgcc
    16501 taaggttaaa aaaaactctg catcgtaaga atgtatttct aaaatcattt taatctcctt
    16561 ttgttttgat gagacaacat tagcttcgtt tggcttaatg tgtgctgttg ttttctaaat
    16621 ttttaagccc taggataact ttattagcat cttctatact taaataccaa agatgcaaag
    16681 gtcgcttttt tacaatatta ttaataaact ctcttaaagc ccactgagta ggatttttag
    16741 catttttact ccaaatggct tgtatcatat taagttgctt ttttgtagcc cttccgcttt
    16801 tagtgttttc ttttttaaaa taccttgctt ttttggtatt ttgctttttt aaaaactttt
    16861 catcatagcc caaagttata gcaaagtccc taagttcatc tatgcttaaa tccttacttg
    16921 aagctttgcc atatctttga tttaaaaccc agcgatagct ttcatcatcg cttaaattag
    16981 catcttttct taaagtatga atgattttaa ttaagtgctt ttttaaagtg ttttgagtat
    17041 tcatttttta gcctttaaaa tttgctctag ttttgaagtg aatttatcaa tatttgcatt
    17101 ataaagctta ttttgattct ttttgtattc taaatagttt tgctcgtaat ctttatttat
    17161 tttagtttgg ctaggaattt gagttttaat aacagggctt atttcaattt tattatcaaa
    17221 aataatttta tcttggtttt taaacatata ttcaactagc ttattataaa actctcctac
    17281 attcagtggt tttctttgct catcacaaag ctctttatta gcattaataa aataaagatt
    17341 atctccacaa tcaacatgct ttaaaacagg ctttcctaac tcatcataaa caatgttacc
    17401 atcataatat ctaagtacaa aagaatatga gaaatctcct ttttttgttt gaaaaataaa
    17461 acgatttgaa aatgaaatga aaagccattc taaaaaagac tctatatttt tgtaccttaa
    17521 gtttaaatca agctctgcaa aggcgcacac aagagaaagt ttttcatagc ttgtaccaac
    17581 aaattgcttt tttaacatgg ttaaatcata gtatttttta aagcctaata tatcttttgg
    17641 tgttttggct ttaaaataaa gtttttctat aaccactgct tgaacttcac taataccaaa
    17701 aagctctttt agtgcctctt ttgcattatc cattaaaact cctcttctag ccaagaagct
    17761 aaagcttttt gcttatcttt atttttgtat ttgttcgcta actttggaag ccaagttgaa
    17821 ttaagcgctc ttttccagca ttttaaaggc tttttattag ccatgagcca tcttccatcg
    17881 tcttgcttat agtaatttat aaagctatct gctataaaat aagggataga gcaagagttt
    17941 ttagcattaa actcatcaat ggctttaatt aaatcttctt tgcttggagg gttaaatttc
    18001 ataactcatc cccaaataag cttaattctt tgtcgttgct gtttttattg tcagctttta
    18061 aacttttcca aacaaaagtg cgaccattct ctccgccaag ctcactttcc caaaaaacac
    18121 ctttaaattt ctctaaagta ttccttgaaa aattatcact cctacttaca tcaagagccg
    18181 ataaaatctc acttgtgctt aggctttttt cgtttaaaag ctttaaaact ttatctataa
    18241 aagcttcttc tttatcgctg attttagcgt tttgcaagtc ggtgttttta atatttagag
    18301 tttttgtatt gataaaaaag gcttgatctt taattcctgc tctttctttt tgcacactaa
    18361 gcaatacttc aaagccttgt tctaagttag ccactttttg taaaaaatac atgcaatcac
    18421 ttgagtttct aatatgattt gagcctttaa aagctctgcc atcttttgta gaatggtgta
    18481 aagccataat ggttgcccca cattctctta aattcatgag taaagacatt aaagacatca
    18541 ttttagtatc attatcaata tctgcaaaat tgcgtaaaga atcaagtaca aataaaaccc
    18601 cttcatagct tcctgctacg cctttgcctt caatcatttc taaaagctca taagctgaag
    18661 tttttaagct tgatctgtga atataagtga atttgctttc atttaaaata agttcaccaa
    18721 aacctctttc atttaaaaca tttaaaggat tatccatgtc aacataaacg atgcttttaa
    18781 cccttgtatc tttgcaaagt gttttagaaa tggcggcact taaataactt tttccacttc
    18841 caccatttgc ataaataata gttattgctt ttttaactaa aaaatcaggg attaaaaact
    18901 ctaatttctc gtttaaatct ttatttttta acttaaactc atttaaaaaa tccaaattca
    18961 tcttttttcc ttgctaaaac ttaatcaagc ccattaaatc aatggacttt gttaaatttt
    19021 ttggcttttt taacatattt catttttatg ttaaaatttt taatattttt taacatttca
    19081 aaagttcagg attctcgtgg atattgccga tagtttcaat agtatatcct tcatcttcaa
    19141 ctaaataaat taaagagcct atgtaatctc cattttttcc ttcaaaataa aaagtccctt
    19201 ctttgtgaat gctgattttt gctaaaaagt aatcgtatag acttttaact ttaacaatat
    19261 cattctcgta tactttttta cctttcttgt cataaagccc tgtaaaaagc tctatttcac
    19321 aatcctcttt aaactcagat aaccttgttt tggcttcttc accataaaca tattttgttt
    19381 ggcatttgca atccttatta ccacaaccct tgtgatgctt atcccaaact ctaaaatcaa
    19441 aatcttgtag tttcatttgt tacctccatt tatacttttt atagtttttt gccattcctc
    19501 atcgctttta aactcattat taagttcttt taaaagttta agtgcttcat cattagacaa
    19561 attagaaaga atagctctta ttctttctaa tggcttgata tccttatgga taattccaaa
    19621 gaattcctct tgctcttttg tgcttaaatc ttcaaaaagt tcagccaaat catgagcatc
    19681 tatatcttct aaatcactcg catctatgct tacattgaca tacatttttt atccttttgt
    19741 tttaaattaa gttttaaaaa cttaatcaaa tccgccttag cggacttgtt aaattctttt
    19801 aagtctaatt ttttgctttg aagtcatttt cttttttctt ttaaagcttt gcttttttag
    19861 cttaggctta tttttaaaat caagttctaa aaagccatta aaatgagctg tttttgtttt
    19921 aaaaacacta tttaaaagtt taaaagtcgc taaggaaagc tctctcattt ttcaatctcc
    19981 aagctttcaa tctttggctc tattctaaaa ttatctttta caactctttt aagtcctagc
    20041 tttactaagg tgctatcttc aagctctgca atagcatctt tattaagttc ttctttataa
    20101 gtaatgcaat cattaagtcc atagcttttt aaagctttga ttaagttttc tagtttttct
    20161 ttcacacgtg gtaaagatac acttttactt aagcgatagc caatcttgcc aaaggtaaat
    20221 tctttgcttc ttttttctgc aaactcgtgt ttattatttt cacaaaaggt tgtaatgcac
    20281 tgctctatat atttaagttc atcacttaaa accttaatct ctcctgcacg agcttcttta
    20341 atctcattac aagctaaagt cacctcgcca ttaatctttt ctatttttac gctaagttct
    20401 gccacttttt taagtgctaa gttaacatct tctaaattat ttatttgcat ctattctcct
    20461 tttaaattaa atttattaat ttgataatcc caaagaatta cgccatatct taaaagcact
    20521 gcgtgtttag tttttttctt gattatcctt aagcccttat tgtaagggca actccaaaac
    20581 tagctcttta atgccaagct ttttagcaag tgctaattct tcttgcatac cttgtgaata
    20641 ttttgcatct ttgtgtttgc taagataaat ataatcacac gcttttaaaa gctctaatcc
    20701 catttgtaaa gctttgtctc tgtgcttgtt ttcatccaaa taactaaatt gtagtatggg
    20761 tgaaacaggc acaaaacctt cacattcacg cataattttt aagcattctt gctgagctat
    20821 gctaatagct tgtgcttttc tttgactttc tcttactact aaagctttgt aaggagaggc
    20881 tacataaact aatgccattg ttaatccttt ctaataaatt taagttttaa aaaacttaat
    20941 caaagtgctt taatttaagc acttttgtta agctttttac ccaaatgaaa acgaatgatt
    21001 ttttttgcaa tataatcagg ataaattcct tttaaaacat ctacaaacac tccactttct
    21061 ttataaataa tgcttacacc ctttatctca aaaagcgaag cactataatc agctttctca
    21121 cctttaatca ttggtatcat tttttctctc cttgtattaa gttttctttc tttgcttttt
    21181 cttttttgat taagtcaatc gtttcaaaga tagccatcca cttgtcttta tttttaggac
    21241 tctttaactt tctaagagct tcagtataga tttgatgaac gcgtgtcacg ctaagattaa
    21301 gttctttagc tatctcttca aaactcattt ttagcccagc attaaaaatg atgcggcagc
    21361 ttctatgtgt ttaagctcaa ccgcttttcc atctgcaaat tcacaagctc tttttaaaag
    21421 cttctcactt tttctaaagt tgccacgagc gaggttaaaa actaaatcaa tagccttttt
    21481 ctcctccaca tcaaaatgat tacaaagtgt ttttaagtct tcatctttta aaccttcttt
    21541 gttttggtag caaagtcctt ttaattccca ttttgcacca attctagagc ttagttgtcc
    21601 gtactcgttg taatcatttc ttccaatgcc tgtaagattg tttttaagtt ttctagtacc
    21661 tactaagatt aaagcagtat ttgaaaaatc atatatgcgt cttaagcact ccaaagcacg
    21721 aaacggcaaa tgctcactct catctataat taaaaccttt gaagttcttg ctaactcgct
    21781 agcaatgcct ctaatcttat catccaaaga acctttaaaa cacacattga gtttattttc
    21841 aagccccacc aaaagcattc ttttgcttgt ctcagttgtt gcttcaaaaa gcaccactct
    21901 tgttccattt ttagcggcat attctttaat ggctctgctt tttccagtcc ccgcttcgcc
    21961 aatgattact cccatttctc tattgctcat ggcactttca atggttacat taatcgcctt
    22021 tgcatcttta gtggcaataa aaggtgtttg aagctctttc acgctttttt cttccacaaa
    22081 gcttttaatg tatttttcaa gtaaaggctc tacttttgaa gcgtatttat agctacttcc
    22141 ttctttcata tagcccacca tatagctttt attaatccct aaacgatcgg agagattgtt
    22201 ttgagagatg ttttgggtgc ttaaaaactt tttagtaagt tctactaatt gcatttttat
    22261 cctttctctt aacttcacag cggaagtaaa ttccgctttg tgagcaggag ctttgctcct
    22321 tgcatccacc taaagccccc gtcccactga agtgggggca tctttgtttt agagctttat
    22381 aaaaactctt taaaacttga attaatcaag ctttaaacaa tttttaacca gcaaaatatt
    22441 tcttttcgac aaaagcttcc atgtcaaact cgctttcatc gttatttatt tcttttttag
    22501 catttaaaat aagctcatct gcattagcat tatttttaat ctcttctaat tctctttgag
    22561 tttttaaagt ttcttttgca agggattttt gatgcacctc tttagcttct acgagtgagt
    22621 tttcaaaagc actttgtaaa tcttgtaagt cttgtttaat attaagttta gtaaaggcgg
    22681 caatctcatc ttttttaagc acttctttaa tcgctttaac ttcactttca taaccttttt
    22741 taagcatttt atagctttct ttactaagtt tagcgatact ttcatcaagt gctagacaaa
    22801 gaaagtttcc gcttaaatca taaatgaaaa gttctttaat attatcgata ttttgcacac
    22861 atttaaccct tgtgccaaca cttggcatta aagcactttt ataaactcta ctttcaaagt
    22921 taatgccttt tttgcccacg accctaagtt ctttattccc agcattaaac aaaaattctt
    22981 cataagatat ttttacaata gctctatcgc acgagttcca aagttcaagt ggagttttaa
    23041 cgcctttttt gcggcgaact ttgctcatgt tccacttgat cacttcagct tccaaaagct
    23101 cacaagcttc gctgaaggtg tgaaggagtt tttgattagt ttttttagca aagccgtatt
    23161 catctttagc ttttctttct ttcttaggag ttttttgctc tatcatttct cttttagcta
    23221 agctatttcc aatatgtcca tgcattttag aaattcctgc atgttgaagt gtcccaaagc
    23281 gtctttcaac taaagctttt tgttctcctg cataagcaat agctgcatca taggtaatat
    23341 taagcccatc aagcaagctt tgaaaatctt tagaaagata atcttttcca ttatcccctt
    23401 taatcatatc aggcttacca aacttatcta tggctttcca taaaagtcta gttaggctta
    23461 aagagtttga ttttcctacc aaagtagcta ctcccatacc gctaaagaca tcaacgacac
    23521 ttaagatatg agggcggaaa ggctccaagg tttcatcatc tcttactata acatcagctg
    23581 gggaactatc gatttgccaa cacatgtttt tcatgtcata tagctctctt tgatttcctt
    23641 gtgcagggag aaacttagat tttgcacgat ctaagccttg agtgataata caatgttcta
    23701 atggtttatc tttatagtag tttttaatga aattttgtaa ggtttttaca ctaaaaagcg
    23761 gttttacctc tcctaaatca aaacctataa aatcataatt ttctttagtg gctgcttctt
    23821 tatggatttg ccaccaaagt tcagtgaaat taaatccacc tgctgcaaag gtgcgatatt
    23881 ctcttaaggc gtattcttgc atccaagtgc taagtttagt tttatctttg cggtgaagtc
    23941 cgcgagtgtc gataagacct agaatgccat tttctttata tgctttgcga attctaaaaa
    24001 tttctatttt agaaatacca catatctcta aagctctttt ttgttttaaa ccaccttcaa
    24061 tatatttttc tacttgcttt aaagccttaa gcttttctct agcattgttt ttaatctcat
    24121 cgcttaaatt ttcaaatttt aaatttaaaa cagccaaatc atcattcatt tttgactctg
    24181 ttaaatttaa attactggtt tttaaactat tatttgcagt ttttaaatta tcggtagtaa
    24241 taatttcact caatttaact ttttgcattt tttcatcata aattaaagta tttttactga
    24301 ttaattgctt attaaaggcg gttaaaagct catctttact gattttaaat agtagttttt
    24361 taccaccgcg tccacctttt tcgttatcca cttttaacca ctcatattta tttgagtttc
    24421 tacttactgc aagcctcaaa gctcctgtgc ttacattaaa agtttgtgcg gcttctttgg
    24481 tttctaagaa gtaactcatg aacaagccct aggcatttca tcaatgattt taagctcaaa
    24541 aagcttctca taaacagctt ttgtgttagt ttttgctttg tatttttcag aataaagtcc
    24601 attaactaca cgaaataaac tcatatagtg aagattatgt ttttgagcaa attttttaag
    24661 attgatacca ttatcttcaa agtattgttt taacaaaata tctcctttaa tttgtaattt
    24721 ttatttcaaa ttgatatttt ttaagataca atttgtaaat aatttttcaa attataagac
    24781 aaaatgcgaa ttaagtcaag ttattttatc gcattttgtg aattttttaa taaaaaaggt
    24841 tcataatgta taaaacaaca gacattttga atagagttta tgctatttta aatattaccg
    24901 acgacaagga attttgtgga atttatgaga taaaacccaa tacattaagt acttggagaa
    24961 ctagaaatac catcccttat gagttattat tgaaaatatc aaaagaacaa aatatatcgc
    25021 ttgacagcat cttttttggc aaaatgcgaa ttaatgatga caatttgcaa ttaagatact
    25081 atacggatgt tgctgccgct gctggatatg gtgcaataaa tagcaaattg gaatatacgg
    25141 aaatagtaat aagcaaaaaa tttgcttgcg aggcattggg attgccgcct ttaacaaggc
    25201 ttgatattat taaagttata ggggatagta tggagccttt tattcataat ggagatgtta
    25261 tagctgttga tgttagtaaa aataaactcg agcttgtaaa aaatggagat atcgtggtta
    25321 ttaatcttga tggtgaaatt tactgcaaaa agctcctcaa gcaacctttt gtaaatgaaa
    25381 ttgtattgag ctctatgaat tctttttata aggacattgt tgttaatata gatcaaatta
    25441 gctgtgctga aattataggc gttgtttgta aagcaatttc aattaaaact tttgaaaatg
    25501 ctattataaa atatgaatga tgctatattt tattattgca atattaatta taataattgc
    25561 tttatttatt tattctggtt ttaaaacgga attgaaatta aaaaaaatag cagatggtgc
    25621 tcttactaaa caagatttaa aagagataga agtaatatct aaatattatg aaatttcttt
    25681 aatagaagca gcaaaaattc attatggtaa agctattatt acagaagaaa tgatcgaaag
    25741 attagaaaga ccctatcgag aattatatga acaatataaa aaactttcta taaatgagca
    25801 aggaaaattt ttgcacaatt tgcttttaaa taatcaagat gaatatgcag aagcaataag
    25861 atttattcaa attgcagaag aaagcgttaa tatagcttta aaatcaaaaa ataaagatat
    25921 tgcagaaagc agaagaaaac ttgcattaga aatagaacaa aaaatacaga aaggatatcc
    25981 taaagcctat ggcttaatta tagatataat tcagcttttg gaagataatt atgatgtaaa
    26041 tctttttgaa aatcaatgca ttaagtatta tgaagaagct caaaagttaa aaaccattaa
    26101 atccaagcaa aaaagaattg attatataaa tgatttaata aaagaagctg aaataaatcc
    26161 taaaatcgat gagaaatttg ttaatttttg gaaaaataaa gtaaaagaaa tacaataatt
    26221 acattttaag tttaaggttt gtagaaaaat aaaatgcaac caaaaagtat cattttattt
    26281 ttctatggtt acattttatt tttccgccga caaaatgtcc cttagacgca tcaaaaatat
    26341 ctactttttt attgaaaaaa atttcacttc ttactctctc gcaaaatttt aaataattac
    26401 tatgatacac cactccaccc gcatcagtat cttcataata cacacgcatt ttcatcgctt
    26461 taccttaaaa aatatttcac atttaaaaaa cattagatta tacaacggaa attctttgat
    26521 atcgcttttt agtttatatt aaaaattccg tccaatctta atttaataaa gctttttaac
    26581 ttcactggga gggggtatag agaaattttg ttttaaactt tccattgtta ccttcttaag
    26641 catcaacgct tttgcagcca ctcaagcaaa tactacagac aatcgaaatt tcaatattcc
    26701 aaagcattat tttaatgata acgaacttta tgataaaacc aattctactt ataaaaaatt
    26761 ccaaggtata aattattatg ctaagagttc taaacaatat attaacaata tttaacaatc
    26821 ataaaccaaa tattacaaat ataaacgatt taaattttaa acattattta cttactcctg
    26881 atatgagaga agatgaattt ctttctttta aagcaaggca tggtgttaat acagccgatc
    26941 gtagtataaa aaacagttag agtgcttcct tttttaatca cagcaaaaac cgatcatgct
    27001 gatgcaagtt ataacaaact tatattagaa caaggagaac ttagttcggt tttttatctt
    27061 aaacctaaag atactcatat aaaaacccta gtaattctaa aagcaatcaa cgcatgaatt
    27121 tcttaatgag ttctaccttt actcattata gtaatgcaag ctataaccaa accatacttc
    27181 aaaaagatgc ccatattagt atgggagttg agaacactta tgatttagcc ttaaatggtt
    27241 ctccttattt aatcggagct ataaccactt atggagattc tacaaataat agtttaaata
    27301 taaaagcagg tagcagtgta gagtttttta ctttcttgcc taaaaaagat aaaaatggta
    27361 ataatacctt tgatgaaaga atcactcacc ttgtaggtgg tttagcttat caaggtaatg
    27421 taaaaaacaa taaaatcttt atcaaagatg ctaatatgat tatccatggt ccaagcaaag
    27481 cttatgctag tttagctgct gctcatatta gcgcaggtta tatagatagc gaatcagata
    27541 aaaactttca agccagtaaa aaccttttag acatagatag ttttaatctt gatatgtata
    27601 tgaaccatga taaacaaccc ttagcttata attctgtttt atttgctgat tttttgggtg
    27661 gaaaaaccga acaaggacaa gccttagata atactatcaa tattaaaaga tattaaaaac
    27721 ctaaaaaaat aaaaacaatg ggaacatttt tgctcaagct ttgtttaact tctacgcagg
    27781 agcttataat aatggagaag taaattataa caccttaaac atagaattaa aacatccttt
    27841 agaaatcgct aataacttct taggttataa ccaacattct ttttatggtg actttgcaac
    27901 taaaggagtt aatcataata ccattaacat taaaaacgat cttaccacaa ccgatctttc
    27961 tcaaagctat aaagatgctt taaatattat agctgctaga accttagaag gcagtgcgga
    28021 ttataataaa gtttatatta ataattctat gtcaacctta cctgtataca tttatacagc
    28081 taagaaaaac cttcttaata atcaagactt ttatcctagt agtgctaata acaataaagt
    28141 atcgattaaa gattttgctt cttttagaaa tctaactgta ttaacagaag ccaaagaagc
    28201 ttcttataat actataaatt ataacaatgt tcaaagcatt actgatacaa gtaatacaga
    28261 taaaggttct aaaatcatca taagagcttt agataaagcc aatcataata ccatagatat
    28321 aaaaaactat tcttctaatg cagctgataa tgcttatttg attatggctt ataatgaagc
    28381 tgcttataat aaaatcatta tcaatgatac tttatttggt gtagcttcag ataaaagaga
    28441 aggaatttta agtattatag ctggactttc aaacaatggc catgataata ccttaatcat
    28501 aaacaatctc aatcttgatg agtataaaaa taacaattct gtttttatag ctccttcggc
    28561 cattacaggt ttaagtgaag ctaaatctta taataatacc ttatataggc gggaatttaa
    28621 atatatttaa aaacactttc atagatatat tagcaggag
//
LOCUS       DAQSLY010000007        28636 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.007, whole genome shotgun sequence.
ACCESSION   DAQSLY010000007 DAQSLY010000000
VERSION     DAQSLY010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28636
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.007"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..434
                     /locus_tag="R2H98_000234"
     CDS             <1..434
                     /locus_tag="R2H98_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HEE9023162.1"
                     /translation="QDLSKEKFDLIVSNATLQWLDLKRIILSLRDMLNQNGILLLSTF
                     AKQNLKEIKQSTGFGLNYFSLNELEQIFKVYFNEVKITQELVELSFDNALDVFRHLKL
                     SGVNSLGFYPLNKGFLKEFEEKFQNKLTYHPVFILCKNDIK"
     gene            485..1234
                     /gene="modA"
                     /locus_tag="R2H98_000235"
     CDS             485..1234
                     /gene="modA"
                     /locus_tag="R2H98_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEE9023163.1"
                     /translation="MKKFIVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            1231..1632
                     /locus_tag="R2H98_000236"
     CDS             1231..1632
                     /locus_tag="R2H98_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEE9023164.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            1625..2299
                     /gene="modB"
                     /locus_tag="R2H98_000237"
     CDS             1625..2299
                     /gene="modB"
                     /locus_tag="R2H98_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEE9023165.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFVN
                     KKMSFQ"
     gene            2296..3180
                     /locus_tag="R2H98_000238"
     CDS             2296..3180
                     /locus_tag="R2H98_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEE9023166.1"
                     /translation="MIKIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLHLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(3265..4038)
                     /locus_tag="R2H98_000239"
     CDS             complement(3265..4038)
                     /locus_tag="R2H98_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEE9023167.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            4258..5082
                     /gene="panB"
                     /locus_tag="R2H98_000240"
     CDS             4258..5082
                     /gene="panB"
                     /locus_tag="R2H98_000240"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEE9023168.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAISRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            5093..5941
                     /locus_tag="R2H98_000241"
     CDS             5093..5941
                     /locus_tag="R2H98_000241"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEE9023169.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            5938..6318
                     /locus_tag="R2H98_000242"
     CDS             5938..6318
                     /locus_tag="R2H98_000242"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEE9023170.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(6381..6838)
                     /locus_tag="R2H98_000243"
                     /pseudo
     CDS             complement(6381..6838)
                     /locus_tag="R2H98_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(6822..7481)
                     /locus_tag="R2H98_000244"
     CDS             complement(6822..7481)
                     /locus_tag="R2H98_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HEE9023171.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            complement(7471..8247)
                     /gene="surE"
                     /locus_tag="R2H98_000245"
     CDS             complement(7471..8247)
                     /gene="surE"
                     /locus_tag="R2H98_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEE9023172.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            8427..9795
                     /locus_tag="R2H98_000246"
                     /pseudo
     CDS             8427..9795
                     /locus_tag="R2H98_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            9937..10689
                     /gene="peb3"
                     /locus_tag="R2H98_000247"
     CDS             9937..10689
                     /gene="peb3"
                     /locus_tag="R2H98_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEE9023173.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            10786..11880
                     /locus_tag="R2H98_000248"
     CDS             10786..11880
                     /locus_tag="R2H98_000248"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEE9023174.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGK
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            11892..12377
                     /gene="greA"
                     /locus_tag="R2H98_000249"
     CDS             11892..12377
                     /gene="greA"
                     /locus_tag="R2H98_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEE9023175.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            12528..13145
                     /locus_tag="R2H98_000250"
     CDS             12528..13145
                     /locus_tag="R2H98_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEE9023176.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYKRSFFVVEYQQEIKFREQKLRGQNV"
     gene            13138..14094
                     /locus_tag="R2H98_000251"
     CDS             13138..14094
                     /locus_tag="R2H98_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEE9023177.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            14098..16407
                     /locus_tag="R2H98_000252"
     CDS             14098..16407
                     /locus_tag="R2H98_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEE9023178.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            16412..16933
                     /locus_tag="R2H98_000253"
     CDS             16412..16933
                     /locus_tag="R2H98_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEE9023179.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            16933..17556
                     /gene="serB"
                     /locus_tag="R2H98_000254"
     CDS             16933..17556
                     /gene="serB"
                     /locus_tag="R2H98_000254"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEE9023180.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            17556..18533
                     /locus_tag="R2H98_000255"
     CDS             17556..18533
                     /locus_tag="R2H98_000255"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEE9023181.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(18534..18956)
                     /locus_tag="R2H98_000256"
     CDS             complement(18534..18956)
                     /locus_tag="R2H98_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEE9023182.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(18953..22222)
                     /gene="carB"
                     /locus_tag="R2H98_000257"
     CDS             complement(18953..22222)
                     /gene="carB"
                     /locus_tag="R2H98_000257"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEE9023183.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDTKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVFKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNHELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(22483..23232)
                     /gene="mreC"
                     /locus_tag="R2H98_000258"
     CDS             complement(22483..23232)
                     /gene="mreC"
                     /locus_tag="R2H98_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEE9023184.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(23222..24262)
                     /locus_tag="R2H98_000259"
     CDS             complement(23222..24262)
                     /locus_tag="R2H98_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEE9023185.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(24273..25496)
                     /gene="clpX"
                     /locus_tag="R2H98_000260"
     CDS             complement(24273..25496)
                     /gene="clpX"
                     /locus_tag="R2H98_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEE9023186.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(25489..26280)
                     /gene="lpxA"
                     /locus_tag="R2H98_000261"
     CDS             complement(25489..26280)
                     /gene="lpxA"
                     /locus_tag="R2H98_000261"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEE9023187.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVVEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(26280..26720)
                     /gene="fabZ"
                     /locus_tag="R2H98_000262"
     CDS             complement(26280..26720)
                     /gene="fabZ"
                     /locus_tag="R2H98_000262"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEE9023188.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(26815..27906)
                     /locus_tag="R2H98_000263"
     CDS             complement(26815..27906)
                     /locus_tag="R2H98_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEE9023189.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEG
                     FYRSTKDEIVLVEFWRFNAFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
     gene            complement(27906..28361)
                     /gene="bcp"
                     /locus_tag="R2H98_000264"
     CDS             complement(27906..28361)
                     /gene="bcp"
                     /locus_tag="R2H98_000264"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEE9023190.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GAWGLKKNYGKEYEGLIRSTFVIDEIGRIAQIYSNVRVKDHALKVLESL"
     gene            complement(28358..28564)
                     /locus_tag="R2H98_000265"
     CDS             complement(28358..28564)
                     /locus_tag="R2H98_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEE9023191.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITKLLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKAIK"
BASE COUNT         9796 a         4653 c         4347 g         9840 t
ORIGIN      
        1 aacaagattt aagtaaagag aaatttgatc ttattgtttc aaatgcaact ttgcaatggc
       61 ttgatttaaa acgcattata ctaagtctta gagatatgct aaatcaaaat ggaattttac
      121 ttctttctac ttttgcaaaa caaaatttaa aagaaatcaa acaaagtacg gggtttggtt
      181 taaattattt tagcttaaat gaattagaac aaatttttaa agtctatttt aatgaggtaa
      241 aaattactca agaactcgta gaattaagct ttgataatgc tttagatgtt tttagacatt
      301 taaaattaag cggggtaaat tctttaggtt tttatccttt aaataaaggt tttttaaaag
      361 aatttgaaga aaaatttcaa aacaaactca cttatcatcc tgtatttatt ttatgcaaaa
      421 atgatataaa atgatttttt tgtgttataa tccaaaaatt aaatttttac acaaggaaaa
      481 ctaaatgaaa aagtttatag tattttttgg gattttgctt tttgtttcgt gtttaaatgc
      541 acaaaattta agcattttcg tggcttcttc agcttcaaag gcaatgagtg aagttaaaga
      601 tgagtttttg aaaacacatc cagaagataa aatagaattg gtttttggtg cttctggaaa
      661 atattatgag cttttaaaac aaggaagaga atttgatctc tttttttcag cggatactaa
      721 atatgctaag gctatttatg atgataaaaa tgctttaata aaaccaaaag tttatgtttt
      781 gggagttttg gctttgtata gcttggatga aaatttactc caaggaggcg ttgaaaattt
      841 aaaagaaaag gcaaacaaaa tcacgcatct aagcatagcc aatcctaaag tagctcctta
      901 tggagtagca gctaaagaag tgcttgaaaa tttgggttta aatgagcttc ttaaggataa
      961 aatcgtttta ggcgaaaata tctcagtgcc tgttttacat gtagatagca aaaattcaga
     1021 tatagctata gtggcttatt ctttagtttc ttctatcaat catcctaagg gtaaggctgt
     1081 tataattgat gcaaagtatt ttagcccttt agagcaaagt tatgtcatca caaaatacgc
     1141 taaggataaa aaattagcct ttgaatttaa cgaatttatt ggctcttcaa aagcaaaaga
     1201 aatttttaaa aaatacggat ttagcacacc atgaacctta taaaaggaca aatttgtgag
     1261 cttttaaatc aagaggatat agttattgtt aaaatacttt ctaaagaagt gatttttagt
     1321 gttttaatgc ttgaattaaa atctttagaa aatttaaaaa ttggtgtgag tgtagaactt
     1381 ctttttaaag agcatgagct ttgttttagc gcaagcaaaa ctcttttaag tgttgaaaat
     1441 tcttttttag ctaaaattac aaaaattaaa aaaggcaaac ttttatatca ggtatttttt
     1501 gattttaaag gtaatgaact ttctagtatt atcaccaaag aaaaagcttt agaacttgaa
     1561 atttgtgaaa atcaagaatg gctttgtttt gtaaaagcaa atgatattgt attaaggagt
     1621 catagtgctt gatccagctt ttttacaaac cctttatctt acttttaaac ttgcttttat
     1681 cacgactttt atcctttttt ttatcggtgt ttttttagct tatttgttaa gttttgtgcg
     1741 ttttcctttt aaaacaatcc ttcaaagctt tatttccttg cctttgattt tacctcctag
     1801 tgttttggga ttttatttgc ttgtaacttt ttcggctaat agttttttag ggcaagtttt
     1861 aaaagaatat tttaatcttt ctttggtttt tagttttgaa ggtcttgttt ttgcttcttt
     1921 gattttttct ttgcctttta tggtaaatcc tttgcaaagt gccttttcat cgatcaatcc
     1981 aaatttgctc gatgcttctt atagtttagg taaaagtaaa atttatactc tttttagagt
     2041 gattttacct aattctaaag caggaatttt tagtgcttgt gcgatgagtt ttgcccatac
     2101 tgtgggtgaa tttggagtcg tgatgatgat aggaggacat aaacaaggtg aaactttagt
     2161 ggctagtata gctatttatg atgaacttga aatcttaaac tatagcttgg cacatcaata
     2221 tgcttttata ttgtttattt tttctttttt agtgcttttt agtctttatt ttgtcaataa
     2281 aaaaatgagt tttcaatgat aaaaattgat atcaatcatc ctatgaatac cgccaaagga
     2341 agactggatt taaattttaa aaaagatata gaatcaggaa aaattactgc actttttggc
     2401 gaaagtggag caggaaaaac cactctttta aaaatcatag cgggacttat aaagcctaaa
     2461 ttggggcgta tagaagtaga taatgaactt tggtttgatt cttcaaaaaa ttttagttta
     2521 gctttacaaa aaagaaaaat tggttttgtt tttcaagatt atgcgctttt tccaaatatg
     2581 aatataaaag aaaacatcgc ctatgccgct agttctaaag caaaggttag cgagctttta
     2641 gccttaatga agcttgaaaa tttagctaaa atttatccta aacatttaag tggggggcag
     2701 gcacaaagag tagctttagc aagagcttta gcaagagaac caaaaatctt gcttttagat
     2761 gaacctttga gtgctttgga ttttaaaatg cgtgccaatt tacaagatga attaaccaag
     2821 attttagagt attttaaaat aagtacttta ttggtaagtc atgatctagc tgaaatttat
     2881 aagttaagtc atagaatttt agagcttaaa aacggaaaaa ttattaaaga ttttcctaaa
     2941 aatgaatttt ttactcattc aaatatcagc gcaaaattac acttaagtgc aactttgcta
     3001 gaaattaaaa aaagtgatat tttagtggtt ttaaccttgc ttttaaatca agatattatt
     3061 aaaatcactc ttagtgaaga ggaatttcta aaagcttatc aagatgtaaa aatcggcgat
     3121 acgcttttgc tatccataaa agcctttaac cctatcatcg taggaaaact tgataaataa
     3181 gagcaaaaat ttaatttttt aatgagtact ttaagtgtac gcaaatcata caattaagta
     3241 tttttgcatt ttacgaaata ctcactagcc atcattttta acttttttta caagttcatc
     3301 taaatatttt tctaaaattt tttctctttt atataaatct tcaaatttat caatatctaa
     3361 atttagcgcg aaagccttat atttattttc atcttttaaa tacacaaaac ctacaatcca
     3421 agcaattttt tgctcatcat taaaacctgt ttttccaaaa agctctaaat tttccatatt
     3481 ttttaaataa atcatttcct taacactatt cattgcttct tgagaaaaag gtaagctatt
     3541 ttgtgaaagt ctaaaaagca aaattgcttg ttctttagcg cttattttta gtgagttgtc
     3601 aagccaaaaa gtatcgatct tggaaatttt agcattacca taatgaagct tgtttaaata
     3661 ttcttgcata gttttgatac caattcttct tgccacttct ttaaaagcaa gaacattaga
     3721 atattttata gctgaactta aattcatatc ttgcgcccaa gaagataaaa atactttttc
     3781 acctctatag tgataaaaaa tttctttttt agtttttatc acaccactat caagtgcaat
     3841 tagagcatta aaaattttaa aagtggaagc gggagagaaa gtctccatag cccttgaaaa
     3901 gtcgttactc gcccaagttt ttccatcata aaaaacaaaa gtgccgcttg tattatactc
     3961 tttaaaccaa ttatttaata tcttatcttg cccaaacact aaatttaaga aaagtaaaaa
     4021 taaagttatt tttttcataa aatatctttc tatttaaata attttaaaca aaatactttt
     4081 taaagcttta ttttctttaa atatccttta acatgaactg aaattttcta aaattgtaac
     4141 cattaaagca atccatcgat taaatataac ttactttatc attcatttac tatttatgaa
     4201 aaattatatg ctagtttttt gcttattatt ttatagctaa aaattgaggt atgcaaaatg
     4261 agaaaaagta tgattagttt tttggaaaaa aaggccaaaa atgaaaaaat aaccatggta
     4321 agtgcgtatg attatcatag tgcaagaatt ttagacaata gcgatataga tattatattg
     4381 gttggagatt cattagccat gacggtactt ggtatgcaag atactttaag tgttactatg
     4441 gatgaaatgt tgatttttac caaagctatt tctcgcggag ctaaaaagtc tttcgtactt
     4501 gctgatatgc cttttatgtc ttatcaaagt tcagatcgtg acgctatctt aaatgcctca
     4561 agatttatca aagaaagcca cgcaaatggg gtaaaagtgg aagggggtat agaaatcgca
     4621 agtaagatta aattgatttc ccaatcagga atacccgtcg ttgctcacct aggactaacc
     4681 ccacaagctg taaatatgct aggtggctat agggttcaag gtaaagattt acaatcagcc
     4741 caaaaaatta tagatgatgc aaaagctgtg caagatgcgg gtgcttgtat gttggtttta
     4801 gaatgtgtgc ctgtaaaact agcacaaaaa ataagctcta ttttagaaat tccaacaatc
     4861 ggcataggtt caggcaaata ctgcgatgga caagttttag tttatcacga tcttttgggt
     4921 ttaaataaag attttaaagc aaaatttgta aagcattttg ataaaattga tcctcaagta
     4981 ggagttgaaa aatatagaga tgaagttaaa agcggtattt ttccttccca agagcacagc
     5041 tttgattatt tagatgatga attattagat aaattatact aaggatacaa atatgcaagt
     5101 cattacttct gtcaaagaag caaaacaaat tgtaaaagat tggaaatcac atcaacttag
     5161 tataggctat gttccaacca tgggtttttt acacgatgga catttaagtt tagtcaaaca
     5221 tgccaaaaca caagataagg ttatagtaag tatctttgta aatcctatgc aatttgggcc
     5281 taatgaagat ttttctagtt atccaagaga tttagaacgc gacattaaaa tgtgtcaaga
     5341 taatggcgtt gatatggttt ttatccccga tgcaactcaa atgtatctta agaattttag
     5401 cacctatgtg gatatgaaca cgatcacgga taagctttgt ggagctaaaa gactggggca
     5461 ttttagaggc gtttgcacgg ttttaactaa attttttaat atcctaaacc ctgatatagt
     5521 ctatatgggg caaaaagacg cgcagcaatg cgtagtcgtt aggcatatgg ttgatgattt
     5581 aaattttgat ttaaaaattc aaatttgtcc tatcattaga gaagaagatg gcttagctaa
     5641 aagctctaga aatgtatatc ttagcaaaga agaaagaaaa gcgtcactag ctatatctca
     5701 aagcattttt ttggctgaaa aattagtccg agagggagaa aaaaatactt ctaagatcat
     5761 ccaagctatg aaagatattt tagaaaaaga aaaactaatc aaaatcgatt atatagaatt
     5821 agtcgatttt aacaccatgg aaaatatcga aaatatcact gataatgttt taggagcggt
     5881 ggctgctttt gttggaaaaa caagactcat tgataatttt ttagtacaag gattaaaatg
     5941 aatatcactt tactcaaatc aaaaatacat cgcgcaagcg taacagaagc taggcttgat
     6001 tatataggaa gtataagtat agatgaaaaa ttattgcaag cgagtggaat tttagaatac
     6061 gaaaaagttc aagtagtcaa tgtcaataat ggcgctagat ttgaaaccta taccatagcc
     6121 acgcaagaag aaggagttgt atgcttaaat ggtgctgcgg ctcgtcttgc agaagtggga
     6181 gataaggtga tcatcatgtc ttatgctgat tttaatgaag aagaagcaaa aacatttaaa
     6241 ccaaaagttg tttttgtgga tgaaaataac actgctacaa aaataacaaa ttatgaaaaa
     6301 cacggagcta ttttctaaca tctagctatt tttgtaattt tttctatctt ttaatccatt
     6361 atttttgctt atcttaactt ctagttttta taaaccacat cttttttcat taaaaatttt
     6421 tttaaatttt gtccctcttt gataaccttg ttttccctta taagttcaaa accatttttt
     6481 aagaaaaaat ctttagcact taaggatgcg aaagtgtaaa tttcattatg caaataagtt
     6541 tttaaaataa aatcaagtaa attttgtgct aaaccttgtc taacaaaatc aggatgagta
     6601 aaaagcaaat caagcaattt ctgctcttgt ttaacactta taaaacttgc gatttttcct
     6661 cttttttcat agacaaagat ctcatcatat ttaaattttt cttcccattg ttgtctatca
     6721 attttaatcc aagcacaaat ttgatctttt gtataatcct tagcacaaag tgtttttacg
     6781 ctttgctcaa aaagcgacaa acaagcattt aaattttaat atcagctttt cttagcaaga
     6841 acttttctta atgccaagct ggctagggct aaaccaaaag atgcagtcac acccataaaa
     6901 gatccaagat ctttacaatg cgcttcctca tctgaaaata ccacatcaaa atttccctta
     6961 aagcctgatt ttctaagctc gtaacgaaat tttttcgcta aagcatcgcc gtgagtttta
     7021 aaaatacttg tagttttaat gcgtgttgga tcaagctttc tagctccacc tgttgaggag
     7081 ataaaaattt gttttttaaa atctataaga tgagccaaag ctacttttgc aggaatatca
     7141 tcaatggcat ctatgataag atcaaactcg cttaaatcaa aattttttaa aaaattttca
     7201 tcgattttac tgactatacc tttaacctta taaattcttt caaatacttt agccttttct
     7261 tcgcctatat tttcgctatg aatttggcga ttttgattag tgatttcaaa tttatccgca
     7321 tcgattaaag taaggttttt aaaaccacta cgataaagcg catcaacgca aattccaccc
     7381 actccaccaa gtccgcaaac caaaactttt gtttgtgaaa ttttttgaaa tttttcttct
     7441 ccaactagcc attttatacg tgtaaatcta tcattcatca tttgccttta accatttttt
     7501 aacttttttc attctttcat aagctgtaag atccagcatt ataggtgtta ttgtagcgta
     7561 gcctttttta agtaaggcaa tatcgctatt tttctcatct tcaaagtcta aattcgccgc
     7621 tgcaagccaa tagtactcta ctcctctcgg attgacattt gaatgggctt caaaattata
     7681 aacccttttg cctgctttac aaattttaat gcctttgatt tttgattttg caggaaaatt
     7741 gatatttaaa aattcttttt tttccaaagg aaaaccttta tcaaaaatat tttgaatgat
     7801 ttttttggta atttgtaaag catttttata gtctagttct ttttcgcttt ttttataaaa
     7861 ttgagaaaga gcgatagcag gaattccttg taaaaccgcc tccatagctc ctgcgcaagt
     7921 tcctgagtag gtaatatcct cgcctacatt agcaccttta ttaatcccac ttattacaag
     7981 atcaggcaaa cgctttttgt ataaagcatg caaagcaaga taaacacaat ctgctggagt
     8041 gccatcatca agtttgtaaa atctttttcc cactttaaca aaacgcaaag gtttggttag
     8101 ggttatagag tgcgaacaag ctgatttttc actagcagga gctactatgg tgatcttggc
     8161 tttaaattct tttgttaaca tcttaatgag ttttttaagt ccttcgcttt cataaccatc
     8221 gtcattagtg ataagaattt ctttcattgt cttccttgca aaagataaaa atctggattt
     8281 taacatattt ttttaaagct tcatagtata aaattttaat ttttaaatta tataaatttc
     8341 gtattatttt taattatttt tttattttat atcgattaac attatttaaa ctataaaaat
     8401 ataaagttag taaggatggt ttaaatatgt ttgatttttt caaacctaag gcaaaagcta
     8461 ttaaatttcc tctttaggaa attttaccta gatattacaa aatgagaact tggagtttaa
     8521 gtggggtttt tataggatat atgggatatt atcttgtgcg aaataatatc actctttcaa
     8581 ctccatttat acaaaatcaa cttaatctca gtaaatcaga catcggaaca atcacaggct
     8641 caatgcttat agcttacggg attagcaagg gtgcaatgag cgttataagc gacaaagctg
     8701 atcctaaaaa atcatggctt taggtcttat tttatgtgct cttgtaaatg ttttacttgg
     8761 tttttcaaat tctttttacg cttatgtagg ttttgttatc gcgcttgggg tttttcaagg
     8821 tatgggggta ggtccttctt ttatcactct tgcaaactgg tatcctaaaa aagagcgggg
     8881 aatttacacg gccgtttgga atatctcaca taatatagga ggcgggatag ttgctcctat
     8941 agtttcgctt tcaggttttg ctttggcagc attattgggt gtgagtatgg caaattttaa
     9001 cgaaacatat tggcacatga atcattttta tactcctgct gcttgtgcag ttatcattag
     9061 tctttatgcg ctttatgcag ttaaaggaaa tcctaaaaat gaaggtttgg ttgatattac
     9121 tgaaatcaat gaaatgcgag ggattaaaac agaagaaatc aaagctatag aaactccaaa
     9181 tttaagcagt tttgaaattt tttatcatta tgtacttaaa aacaaaaatg cttggtatgt
     9241 ggcttggatg gatacttttg tttatatggt gcgttttggg cttatttctt ggcttcctat
     9301 ttacttgcta gaaacaaaag gctttaataa agaacaaata ggtattgcct tttggctttt
     9361 tgaatgggct gctatacctt ctactttact tgcaggatat atttcagata aaatttttaa
     9421 aggctataga atgcctcctg ctataggcgc catggttatt attttcttta tgattattgg
     9481 atattttact tcaaataatc tttatatggt tattttcttt gcagctatgg cggggtgttt
     9541 agtctatata ccacaatttt tagcaagtat gcaaactatg gaagtcgttc ctgcttttgc
     9601 agtaggatct tgtgtaggac ttcatggctt tatgagttat gtagtcggcg cttcacttgg
     9661 aacaaaagca taggttgggc tgtggattac tatgatagtt ggaatgctgg tcttatcatg
     9721 ctccttagtg cttgtattct ttgtatactt tgttctactt tatgtcattt tagcgctaaa
     9781 aagaagcatc aataacaatt ttaacttttg cttgcaaaaa taccaagcaa aagttagatt
     9841 ttaataatat ttttgttaca ttataactat ttattaacat acaatttcta aaatcttacc
     9901 ttcaatcaat aaaaatttat cataaaagga aatactatga aaaaaattat tactttattt
     9961 ggtgcatgtg ccttagcttt tagtatggca aatgcagatg taaaccttta cggaccaggt
    10021 ggcccacaca cggccttaaa agatatagca aacaaatata gcgaaaaaac aggcgttaaa
    10081 gtaaatgtaa attttggccc tcaagcgact tggtttgaaa aggctaaaaa agatgcagat
    10141 attttatttg gcgcttcaga tcaatcggct ttagctatag cgagtgattt tggaaaagat
    10201 tttaatgtga gtaaaatcaa gcctttatat tttagagaag ccatcatact tactcaaaaa
    10261 ggcaatcctt taaaaatcaa aggtttaaaa gatttggcta ataaaaaagt aagaatcgtt
    10321 gtgcctgaag gtgctggaaa gagcaatact tctggaactg gagtttggga agatatgata
    10381 ggtagaactc aagatataaa aaccatacaa aattttagaa acaatatcgt ggcctttgtt
    10441 ccaaatagtg gaagtgcaag aaagcttttc gcacaagatc aagccgatgc ttggatcact
    10501 tggattgact ggtcaaaaag caatcctgac ataggaactg ccgtagctat agaaaaagat
    10561 ttggttgttt atagaacttt taatgtgata gctaaagaag gtgcgagcaa agaaacacaa
    10621 gattttattg cttatttaag ttctaaggaa gctaaagaaa tttttaaaaa atacggctgg
    10681 agagaataaa ccttcataca cgctttttag cgtgtattct tgcataactt cttttaatta
    10741 agccaaaata agataaaatg tttaaaatat tgataaggaa attttttgaa aaccttttta
    10801 gtttgtgctt tagagccttc agcaaatttg catttaaaag aagttttaaa agcttataaa
    10861 aaagattttg gtgaatttga acttcatggg atttatgatg agagtttatg caaagaattt
    10921 gatttaaatt ctaaaccact ttatagctca catgaattta gtgctatggg ttttatagaa
    10981 gttttacctt tgattttcaa agcaaaaaaa gctataaaag aacttgcaaa tttaagcttt
    11041 actcaaaaaa taaatgggat tttatgtata gattcacccg cttttaacat accttttgct
    11101 aaagctttaa aaaaagcagg cagtaaaatt ccacgcattt attatatctt gcctcaagtt
    11161 tgggcgtgga aaaaaggtcg catacctatc atagaaagtc attttgatat tttagcttct
    11221 attttgccct ttgataatca attttttaac aaaagcacct atataggcca tccgctttta
    11281 gatgagataa aagaatttaa aaatcaagaa gacattaatc atacattttc aaaaaaagat
    11341 gatgaaaaaa ctatagcctt tttaccaggt tcaaggcgta gtgaaattag gcgtttaatg
    11401 cctattttta aagaactttc tcaaaaattt aagggtaaaa aaattctttg cgttccctca
    11461 tttaatcttg aaaaattaga agtttatggt gatattagtg aatttaagat agaaagtaac
    11521 actccaaaag tgcttaaaaa agctgatttt gcctttattt gtagtggaac agctacttta
    11581 gaagcagctt tagtgggaac tccttttgtt cttgcttata aggcaaaggc tatcgatatt
    11641 tttatcgcaa aactttttgt aaaattaaaa catataggac ttgcaaatat tttttgtgat
    11701 ttcgctggaa aagaagcttt aaatcctgaa tttttacaag ataaagtcaa tgttttaaat
    11761 ttatatgaag cttacaataa atatgattat aaggcatttt ttgctaaagt tgatttttta
    11821 aaagaatatt tacaatttgg aagtgctaaa aatttagcaa aaatcctaaa cgaaatataa
    11881 aaggataaat catgcaaaaa gaaccaatga gtcaatttgg ctatgataag ttagccgcag
    11941 aattaaaaga tttaaaagac aatcaacgcc ctgccgttgt aatagaaatc gatacagcaa
    12001 gaagtcatgg ggatttgaaa gaaaatgctg aataccatgc tgcaagagaa aagcaagctt
    12061 tgatagaaag tcgtattgca gagcttagtg acttgctagc aagagctcaa gtgatcgatc
    12121 cttcaagcta tgagcacgat agtgtgaaat ttggttcaag tgttgtgatc atggatttgg
    12181 atacagaaaa agaaagcaaa tatactctag taggaatttg cgaaggaaat ttagataagg
    12241 gttatatttc catcgcatct ccaatagcaa aagctatgct tggaaaaaaa gaaggagatg
    12301 attttaaagt gcgtttgcca aaaggtgaaa gtgaatttga aatcctttct ataaattatg
    12361 agcctttgaa attttaagga taaaaaattt tactacaaaa tggagcgatt ttaatcgcag
    12421 atgctcatga aaatgaacaa agaaagggat tttgggaatt tttacaagcc ttaaaaaaag
    12481 gtaaaatttc cacccctcaa ctcatactta taggtgatat tttcgatttg cttataggcg
    12541 aaatctctgc tacacatgaa tttgctaaac cttacataga acttttagaa gaattggcct
    12601 taaaaattga aattatctac ttagaaggca atcatgattt taatctttct tgttttttta
    12661 aaagggtaaa aatttttaac ttacaagagc agcccataaa gcttaatttg catacaagta
    12721 aaggtaataa tcttgtttta aatagtgctt ttataaaatt agctcacgga gatatttttt
    12781 taccacctct tttacaattt actctgaaaa cattaagaaa tcattatttg cttgtatttt
    12841 tgaatttttt aaatattatt actcgtaatt ttatttcaaa taaaattctt caaaatcaaa
    12901 acaaaaaaaa ccttttttat caaataaaag attttgaaaa tttagcgaaa aaaagatatg
    12961 aaaaatatga aaatttagga ttttgggtat gtgaaggaca ctatcatcaa aatcatcaaa
    13021 tcaacaaaga aaacattaaa tatcttaact tagctagttt tgcatataag agaagttttt
    13081 ttgtagtaga atatcagcaa gaaatcaaat ttcgagaaca gaaattgagg ggtcaaaatg
    13141 tttgatgaaa atatcgtgaa aacgggttca aatgaaatgg agcttgtcga tttccgtatc
    13201 tttaagcaag ggcacgataa agtctatgaa ggaatttatg gtgtaaatgt ttctaaggta
    13261 agggagatta taaaaatccc aagccttaca gaacttccag gtgtacctga ttacatcgaa
    13321 ggtatctttg atcttcgtgg agtggttata cctgtagtca atcttgccaa atggatgcaa
    13381 atcactgagc cagaaagcac tatgctaaaa cctagagtta ttattactga atttagcaat
    13441 attcttattg gttttatagt tcacgaagca aaaagaattc gtagaataaa ctggaaagat
    13501 atagaaccag caactttttc tacaggatca ggtgctttag ataaaggtaa aattacaggt
    13561 gtaacacgca ttgaaaatga tgaagtgttg ctaattttag atcttgaaag tgttgttgaa
    13621 gatttaggaa tttacgctcc aaaaacagat atagattttg gaaaaataga aaaatttact
    13681 ggaacagcac ttatacttga tgacagcatg actgctagaa aacgcgtcaa agaaatgatg
    13741 caacagatgg gctttcaagt tgttgaagct aaggacggcg tagagggcat aaacaaatta
    13801 gaagaattaa gccaaattta tggtgaaagt ttaaacgata ctttaaaaat tatagtaagc
    13861 gatgtcgaaa tgccacaaat ggatggtttc cactttgctg cacgcattaa agaagatcca
    13921 agatttaaag atattcctat agtctttaac tcatctttat caaatgaatt tatgaatgag
    13981 aaaggtgttc aagaagctgg tggagaaggc tatcttgtca aatttaacgc tagcgatttc
    14041 ttcaatgaaa ttgcaaaggt tattaaaaaa catcaatctc aagaacaggg gtaaaatatg
    14101 gaagatatgc aagaaatact tgaagacttt ttggttgaag cttttgagct tgttgagcaa
    14161 atcgaccatg atttagtaga gcttgaatca aatccagaag atttagaatt attaaataga
    14221 attttccgtg ttgcacatac ggttaaagga tcatcaagct tcttaaattt tgatgtttta
    14281 acaaagttaa ctcaccacat ggaggatgtt ttaaacaaag caagacatgg cgagttaaaa
    14341 ataactccag atatcatgga tgtggtttta gagtctattg atagaatgaa aactttactt
    14401 aattccattc gtgataatgg caacgatact gctattggta tggatataga accaatttgc
    14461 gcaagattaa cagctatttc agagggagag tctcctgttg tggcaacaga ttcaaatgaa
    14521 aaatctactc cacaagcaga actagaagca ccaaaacaag aaatagctac tccagaacct
    14581 gaagtagatg ttaatcaatt aagtgattct gaagttgaag ctgaaataga aagactttta
    14641 aaagttagaa aagctgaaga tcaagctcgt cgcgcacaaa agaaacaaac aacaaatgcg
    14701 gcacctaaac cgactaacaa tacagcgaat aaacctacgg aaagtggaga gaaaaaagtt
    14761 cctgcttcag gtagtaatgc tagcagtatg gatcaaacca tacgcgtgga ggtaaaaaga
    14821 ttagatcact taatgaatct aattggggag cttgttttag gcaaaaaccg tttgcttaaa
    14881 atttacgatg atgttgaaga gcgttatgaa ggagaaaaat tccttgaaga acttaatcag
    14941 gttgtaagtc aattaagtat tattacaact gatgttcagc ttgctgtgat gaaaacaaga
    15001 atgcaaccta tagcaaaagt tttcaataaa ttcccaagag ttgttcgtga tttaagtcgt
    15061 gaattaggaa agcaaataga acttgaaatt acaggtgaag aaactgaact tgataaatct
    15121 atcgtagagg aaattggcga tcctatcatg catatgatta gaaattcatg tgatcatggt
    15181 gttgaggatc cagcaactcg tgcagcgaat ggaaaacctg aaaaaggtat agtccaactt
    15241 aaagcttata atgagggcaa tcacatcgtt gtagaaatta cagatgacgg taaaggactt
    15301 gatccaaatg gcttaaaagc aaaagctata gagaaaaatt tgattaccga aagagaagca
    15361 gatcaaatga cagacaaaga agcttttgct ttgattttca agcctggttt ttcaactgcg
    15421 gctaaagtaa caaatgtttc aggtcgtggc gtaggaatgg atgttgttaa aaccaacatc
    15481 gaaaaactta atggggtaat tgaaattgat agtgagttag gtaaaggaag ttcatttaaa
    15541 cttaaaattc ctcttacctt ggcaatcatt caatctttac ttgtaggaac tcaagaggaa
    15601 ttctatgcaa ttccacttgc aagcgttctt gaaacagtta gagtgccaat tgatgatatc
    15661 tatactatcg aaggtaaaaa tgtattacgc ttaagagatg aagtgctttc tcttgtgaga
    15721 ctttcagatg tatttggagt taaacaagtc cttgaaagcg gtgatcaaac ttatgtcgtt
    15781 gttatagggg tagcagaaag caagcttggt attatagtag atactcttgt aggacaagaa
    15841 gaaatagtta ttaaatccat gggtgattat ttacaaaata tccaaggtat agcaggagct
    15901 acaatccgtg gtgatggtag ggtgacatta atcattgatg taggcgctat gatggatatg
    15961 gccaaagaaa ttaaagttga tattaaagcg caattagaat caagtgcgaa aaaacctaaa
    16021 gaacaaccaa gtgattataa agtcttaatt gtagatgatt ctaaaatgga cagaacttta
    16081 atgcaaaaag ctttagaacc gctaggagtt agtttaatcg aagcaacaaa tggtgttgaa
    16141 gcattgaata ttataaaatc tggcgaacat gatattgatg caatgcttat agatatcgaa
    16201 atgccaagaa tggatggata caccttagct ggtgaaatta gaaagtattc taaatatcgc
    16261 aacttaccat tgatagcagt tacttcaaga acaagtaaaa ctgaccgttt aagaggtgtt
    16321 gaagtgggta tgactgaata tatcactaaa ccttattctc cagaatactt ggaaaatgtg
    16381 gttagaaaaa atttgaaact aggataagaa tatgagtaat gaaaaattag agcaaatttt
    16441 gcaaaaacag caaactcaga tggctggtcc tgatgtcgat caaagagaag atgatatcat
    16501 ccaacttgtt ggctttgtag ttggagatga ggaatatgcg attccaattc ttaatataca
    16561 agaaatcatc aaacctatag aatatactag agttcctagt gtacctgatt atgttctagg
    16621 ggtttttaat atgcgtggta atgttatgcc gctcattgat ctagctcaac gctttcattt
    16681 aggaagttct aaaatgacac ctcaaacaag atatattgtt ttaagaggtg agacaaatgg
    16741 aactggagtt ggaggaaatg ctggttttgt tatagataga ttaactgaag caattaaaat
    16801 tcacagaaac agaatcgatc caccacctga aactttagtt aaagacaaag gtatgattta
    16861 tggtatagga aaaagagatg aaaatatctt aactatactc aaagtagaag ctttgcttaa
    16921 gcgcgaattt taatgattaa actttgtgtt tttgactttg atgctacttt aatggatggt
    16981 gaaaccatcg atattttagc tacagcgcat ggcaagggta atcaaacaag cgaaattacc
    17041 cgccatgcta tgactggaga acttgatttt ttcgaaagtc ttcaaaaacg agtaagcttt
    17101 ttaaaaggta tgtcttataa aaaagtttta gaattaagta gcacacttcc actaatgcgt
    17161 ggagcacatg aacttatcca atatttaaaa tctaaaaata tacaaattgt tatttttagc
    17221 ggtggttttc atgaaggcat aaatcctgct atgcaaaaac ttggaattaa cctcggtttt
    17281 gcaaattatc tgcatcataa aaatgacatt ttaacagggc tagttggtgg ggaaatgatg
    17341 ttttcaaatt caaaaggctt aatgctacaa cgattaaaaa gctttttaaa tttgaaaaca
    17401 gatgaagtga tgtgtgttgg cgatggggca aatgatttgg caatgtttaa cgaaagtgga
    17461 ttaaagattg cattttgtgc taaagaaatt ttacgttctc aagctgatat ttgcatagat
    17521 ataaaagact taaaagaaat aataaaggta atataatgaa aaatttttct ctttggtgtg
    17581 attttataga aaatagtttt ttagataatg aatttttaaa tttattatca catggaatta
    17641 atggcgctac ttcaaatcct gctattttta aaaatgctat tttaaattct ccaatttata
    17701 aagataaaat tcttaaatta aaagaaaaaa aaacaaaaga tatttatgaa gaattagcaa
    17761 tttctgatat tcaaaaagca gctgataaat tagctcctct tttttatcaa aaaaatgatg
    17821 gatttataag tattgaaata gatccaagac ttcatgataa cacaactctt agtttaggtg
    17881 aagctaaaag actttatagt gctattggca aagaaaatat aatgattaaa attccagcta
    17941 caaaagcttc ttatgaagta atgtatgaac ttatgaaaaa tggtattagc gtcaatgcta
    18001 ccttaatttt ttctcttgaa caaagtcaaa aatgttttga agctttaaat gcaggtttag
    18061 tcgaatttag aaaaaacaat atagccttaa aagaacaaaa cactagaaca ccacaagctg
    18121 ttataagtat ttttgtaagt cgttttgata gacttttaaa tcctaaggct aaggagcaaa
    18181 atcgtattgg aattttaaat gcaaatttag cttataacaa tatctactca aaaaatgaac
    18241 ctaatattcg cgccttgttt gcaagcaccg gagttaaagg agatgatctg ccaaaagact
    18301 attatatcaa agaacttctt tttgagaatt ctgttaatac tgctcctctt gatgcaatag
    18361 aggcatttaa aggaaaaatg cattttaaaa aacctttaat gaattttgaa atttatacag
    18421 aacttaatca aatcatttct caaagtgaac gagaaaaagc ttgcaatgat ttattaagtg
    18481 atggcctaga gcaattttgt attgcttttg aagatatttt aaaagctctt taattaacgt
    18541 atttttatca ttttattctt tgaaagtttt aatatttttg atgggatatt ttcgaaaaat
    18601 ttctcatcaa gtattatatc ggcaacactt ctagcccatt cttcatcaaa ttcttttcca
    18661 tgcttgtttg ccgaagatga ataaaaatag ccatttttac ttaaaaaatt cgcatgttta
    18721 cactctttca caatacgaat ggcctgatta ttgggataaa taaaagttgt ttttttagaa
    18781 cgacgtacta aatttttaaa agattttgga attcttgcta aactttttaa ctcgcaaaat
    18841 ttcgcagaag tgattaagca aggctgattt ttatctctac cttttaaagc attaatctct
    18901 tctaaatttt tacttaaaaa tcctaccgta gtatctgttt gagctaaata aatcaagatt
    18961 taagccactc ttgcaaactc tttacatcta ggcaagattt actctgtata gctttaatcg
    19021 attttgcacc tgctaaagct gatcgtaaat ttgtaaaata aggtatttta aaacgaataa
    19081 tattttcacg aatttttttc gtatcgcctt taaaactgtg actatcgctt gtattgataa
    19141 ctaagtgaat ttccccattt ttcaatttat cttcaacatt ggggcgtcct tctgaaattt
    19201 tatgtacaag ttcgcactca aaaccacttt ctaaaatttc cttgcaagtt ccccctgttg
    19261 ccataagctt aaagccaagc tttacatatt ctgcagcgat ttttttggta tattttttat
    19321 ccttatcttt taaggagata aataccacgc cttgctctgg aagatgatta aacgatgcaa
    19381 tttgactttt cgcataagaa tttgcaaaat ccttgcttat acccataact tcacccgttg
    19441 aacgcatttc agggcctaat tctaaatcac ttccactaag ttttgcaaat ggaaatactg
    19501 cttctttcac gctcatatat tttggagttt tagggcgtaa aattttagta tcaaaattaa
    19561 ccactttaaa agtatcataa aattttaaag cttcttttaa atttccttgc cacatcacac
    19621 gcgttgccac ttttgctaaa ggaatacccg tagctttact aacaaaaggt acggtacgac
    19681 tagctctagg atttacctct atcatataaa gctcatgatt atgtaaagca aattgtatat
    19741 ttaaaagccc tacaactccc aaatttaaag caatatctgc ggttttttgt gcaataaatt
    19801 cttgcatttt ttcatcgata ttgcaaggcg gcaaagaaca agcactgtca cctgaatgaa
    19861 ttcctgcttc ttctatgtgc tccataattc ctgcaacata aacatctttg ccatcacaaa
    19921 tcgcatcaac atcaatttct gtagcattgt ctaaaaactg atcgatcaaa acagggcttt
    19981 tatcgcttac atccacagct tcttgcatat agagtctcag ttcagcctca tcatttacca
    20041 cgcgcatcgc acgcccacct aaaacataac ttggtcttac aagcacagga taccctatat
    20101 cactagcctt aaaaaccgct tcttctacgc ttgttgcagt agaatttttt ggctgattga
    20161 tacctagctt tgtaataaat tcggcaaatt tctttctatc ttctgccata tcaattactc
    20221 ttgagctagt acctataatc ttagctccaa aagcacttaa acgcttagca aatttcaaag
    20281 gagtttgtcc accaaaatgc acaatcactc catcaggttt ttcacgctca atcaccgctc
    20341 ttaaatgttc gaaatcaata ggctcgaaat acaaaatatc acttgtatca tagtcagtcg
    20401 aaacggtttc aggattacaa ttatacataa tagttttaat acccatatct ttaagcgcaa
    20461 aagaagcatg tacgcaagca tagtcaaatt ctataccttg tcctatgcgg tttggccccc
    20521 cacctataat catcactttt ttttcttttt tatccttagt atcgttttta ctttgagtga
    20581 gttcgcttac attgatactt gaataaagat aaggagttaa agcttcaaat tcacccgcac
    20641 aagtatccac ttcactaaat tctgcgatga ttttttgctt cattcttgca taataaatat
    20701 cattttggct taattctaaa ttatctttca aatttacaag caaagctatc attttgtctg
    20761 aaaagcccat agtttttgct tttctcaaaa gagctttatt gtttaaaata tccatatcaa
    20821 tttgctcttc aaaatctaca atttctttaa tctgtgttaa aaaccaagga tctattttac
    20881 aaagctcata aagttcttct acgctaaaac cttccctaaa agcttgagca acataaagta
    20941 aacgcttttc attggcattg cgaattttaa aaacaagatc atttctatct tcaaatttta
    21001 ctctatcaaa accacttaaa gaacgctcaa gcgaacaaag tgctttttgt atactttctt
    21061 taaaagtgcg tcctatagcc atcacctcac ccacactttt catagctgta cctaaagttg
    21121 tgtttgctcc tggaaatttt tcaaaggtaa agcgaggaat ttttgttaca atataatcaa
    21181 tcacaggctc aaaagatgca ggagttcctg taatatcatt tttaatctca tctaaactaa
    21241 agcctactgc caaaagtgtt gcaacctttg ctataggata gcccgttgcc ttagaagcta
    21301 aagcacttga tcttgaaact cttggattca tttctataac tatcattctt ccattttttg
    21361 ggttgatagc aaactgcaca ttacttccgc ctgtatctac gccaatttca cgcaaaatag
    21421 caaaagaagc attacgcata acttgatatt ctttatccgt caaagttaat gctggagcta
    21481 ttgtaatact atctcctgta tgaactccca taggatcgat attttctatg ctacaaacta
    21541 tgatacaatt atccgctcta tcgcgtataa cttccatttc atattctttc caacctaaca
    21601 aactttcttc aatcaaaatt tcatggatag gtgataaagc taaagcagta ttggcaagtt
    21661 ctttaaattc gtccatattg taaaccacgc cacttccagc accccctaaa gtataagaag
    21721 cacggatcat caaaggaaag ccaatttcat ctacagcttt taaagcttca tcataattat
    21781 acgcatacat cgattttggc aaatccatgc caattttttt catacattct ttaaaaacct
    21841 gacgatcttc gcctttttta atcgcctcag gatttgcgcc taaaaatttc acatctccta
    21901 aaagtccgct ttcataaact tccatagcaa catttaacgc tacttgtcca cccatagttg
    21961 gcaaaattgc atcaattttt tcttttttaa taatacttaa aatactttct tttgttatgg
    22021 gttctatata agtcgcatct gcaaattcgg gatctgtcat gatggttgca ggatttgagt
    22081 tgattaatac tacacgatat cctaattctt ttaaagtctt tgcggcttga gttccagaat
    22141 aatcaaattc acaagcttgt cctatcacaa taggaccact tcctataagt aaaatgcttt
    22201 taatatctgt tcgttttggc ataaattttc ctaagagcat aaatttgggc tgattataac
    22261 aaaaattagt tttataaact ttgaaattat cgatataatt ttaaaaaata aacactctgc
    22321 ttttaatcta ggaaataata cataaagaaa tttaagattt tttataaaat tctcattcaa
    22381 ttataaacat ttatttgata atttaacaaa atttttagca ttaaacaaag ttataataat
    22441 tagcaaaaat atagaaaatt tttaaaaagt ctaatccttg acttataaat tatctactac
    22501 atataaataa gcaggaatac taatcttaac ataaggcttt acttctacac tttgatacat
    22561 atcttcatca ttaactctat tcacaatacc aacaggtata tctgaaaaga aaatattatc
    22621 aagtccactt gttaaaattt catctccggt attaattttt gcccattttg gaataaattt
    22681 aaccacaatc ctgccatctt caccctggat taaacctgga gctttggatt ttcctatata
    22741 aacagaaaaa acacactgat catcaccttg taagagagcc attgctctac catttttatt
    22801 aatagctata cctgcagtat atccttgata tattaaacca cgatttttac caactggaat
    22861 tttgctccaa tctaaccata attttttata atcattcaat tgaacgtaag aaataactct
    22921 agttaaagaa acttgaggta aatattttgt agaattttga tcctctaaaa tacgatttaa
    22981 ttgatttgca aaactagtta cctttacagc aatatcttct aattctttat ttctagcttt
    23041 tagttgctga atttgatttg cttgattaaa gtgttctgaa attttttttc ccaaataatc
    23101 tttaatatta taaaaattac ctataacaaa atcattaaca cggagaacat tttgcttgat
    23161 aagtcctcca taataaaaag atataaaaac caaaaaggct aagacaagaa cataaaaaat
    23221 cttattcttc attggttaat tgttgcaata atgaaatttc ctctaaagct ttacccgttc
    23281 cttttgctac agctaaaagc ggttcatctg cgatataaac tggcaaacgt acaatttcac
    23341 ttaagtattt atcaaaacca cgaatcaatg ctccaccacc tgttaaaact acaccatttt
    23401 ctactatatc acttgctaaa tcaggcggca tcatttcaag aaccattttt aaagcatcag
    23461 caatttcttt taaatactca cgcattgctt ctcttacatc ttcacttgta agttcaatac
    23521 gacttaaaag tccacttact tgatcgcgtc cttttaccac catagaaagt tcttttggaa
    23581 gttgtattgc tgaacctatg gtgattttga tctcttcgcc tgttctttca cctatgataa
    23641 gattgtattt ttcttttaca taattaacta tactcatatc aagcttatct ccagctgtac
    23701 gaatagactt tgaaatcaca agtccaccca aagaaatcac tccgatctca gtagttccac
    23761 cccctatatc tactaccaaa tttcctttag gttcttgtat aggtaaactt gcaccaatag
    23821 ctgctgccat aggctcttcg atcaaaaata cctctcttgc acctgcactt aaagcacttt
    23881 ctcttaccgc ttttctttct acttgagtta aaccataagg aacagaaata ataattctag
    23941 ggcgtaaaaa actttttcta cgatgtgttt tttctataaa atagcggatc attttttcag
    24001 tcatatcaaa atctgcaatc acgccatctt tcataggacg aatagcttcg atgttacctg
    24061 gagtttttcc caccatatct ttagcttctt tacctacggc taaaattttt gctttggaac
    24121 catacctttc tctttcaact gccacaacag aaggctcgtt tatcactata cccttatctt
    24181 ttaccaaaac tagcgtatta gctgttccta aatcaatccc catatcacta gaaaaaaatc
    24241 ctataagttg atctaatatc atttctatcc ttttaactta tttttctttt tattaataat
    24301 gcctttgcat tgtctttaac aacttctttg gttattacaa tatcatagtt tttatactct
    24361 ggtaactcaa acattaaatc taccatcatt tcttctataa tacttctaag ccccctagcc
    24421 cctgtttttc tctccaatgc aagctgtgcg atagctctta gagcatcttc ttcaaatttt
    24481 aaatttaccc catcaatagc aaaaagcttt tgatattgct taataatggc atttttaggt
    24541 tcagttaaaa ttcttaccat atcttcttca ttaagctcat ttaaagatgc aatcacatgc
    24601 aaacgaccta taagctcagg aatcaaacca aaatgcacca aatcatcagg ttcaattttc
    24661 tcaagtaaag ctttattttc ttcttttgca tcatcaaaaa aacctacaac tttatctcca
    24721 agttttcttt ttaagatagt ttccaaacca tcaaaagctc caccacaaac aaataaaata
    24781 tttgaagtgt caatttgtat aaactcttga tttggatgtt ttctcccccc ctttggtgga
    24841 atatttacca aacttccttc gataatctta agtaaagctt gttgcacacc ctctccactt
    24901 acatcacgag taatagaacg attttcactc attctggcaa ttttatcaat ctcatcaata
    24961 aaaactatac ctttttgagc tctttgcaca tctccatctg cagcttgtaa aagacgtgtt
    25021 aaaatatttt ctacatcctc acctacatat cctgcttcag ttaaagaagt tgcatcacaa
    25081 attgctatag gtacatctaa aaatttagct aaagtttgcg ccaataaagt ttttccactt
    25141 cctgttggcc caacaagtaa aatatttgac ttaaaaagct ctgtatcatc atcttgaagt
    25201 tcagctttaa aaagtctttt ataatgattg tatactccaa cactaaaaac ttttttagct
    25261 ctatcttgtc ctatgacata acgatctaaa taagctttta attcttttgg agtgatatct
    25321 ttaaattctg tattataact ttgtttaggt tctttaaatt ctttttcttc tccataaata
    25381 atactataag caccttcaac gcaatattca caaataaaag catcatcatt ttcatttgct
    25441 aaaattcttc tttgtggatt ctccacttca ttgcaaaaac tacattttct aggcattatt
    25501 tttaccccta tagacaggaa ttccacgctt tgtttctaat ataaaatggc acattttttt
    25561 aacattttca ctttcttgat tttcaagcaa atttttagca ttttctttta aatctccttg
    25621 tctaaataaa gttttaaaag ctctactaag tctatctact tcatctttat caaaacgacg
    25681 acgagtacct actaaattta aacttctaat acttgcacga tttccttctg ctaaacaaaa
    25741 cggtactata tcctgagaaa gtgcacttgc tcctgctatc atacaaccct cacctacttt
    25801 gacaaattga tgaataggtg taagcccgcc tacaaccgta aaatctccaa gctctacatg
    25861 tcctgccaaa gttgcattat tagctaaaat aatattatta cctaaaagac aatcatgagc
    25921 aatatgacaa taagccataa taaaagcatt atcgcctata cgagtaaaac catctccttt
    25981 agctgtacct gaatttatcg ttgcaaattc tctaatagtt gcatttttcc ctataacaac
    26041 accgcttttt tgctcttctt tataagatat gtcctgagga atatcgccta ctatagcata
    26101 agaaaataca cgagaatgat cacctatagt tgtatctgaa agaattcgag caccttgttt
    26161 gatgacaaca ttattaccta ttttagcatc tttgcttaca taagcataag cttctactac
    26221 aacatcgtca ccaagttgtg caccctcttc aatcaccgca cttggatgaa tttttttcat
    26281 tatttatcca ctatcatagc tttaagctcg gcctctgcaa ctaaatttcc atctacaaaa
    26341 gcttgccctt taaaaatcca catattacca cgatttttaa ccacgctcat ttcataatca
    26401 agcctatctc caggacgcac aggatttcta aattttgctc catctatgcc tgtgaaataa
    26461 actactttac tttttggatc cactttatct tccatacttt caaaagctaa aactccacct
    26521 gtttgagcca taccttctaa aatcaaaact ccaggataaa taggatgccc tggaaaatgt
    26581 cccataaaaa catgatcact tatactgatg tttttatatc ctcgcaccac ttctttaact
    26641 tttaattctg taattttatc tactagtaaa aaaggataac ggtgtggtaa aatttcttga
    26701 atttgcatta catctatcat tattaaatta accttgaaaa caattaaaaa ttttattata
    26761 taaaaaaatc attaaaaatt atattaacaa aaaaagtttt tcttaataaa tttcttaaat
    26821 ttttacaagc acctcttgat tatcatgata aatttcactt tttgctatca cttcatatct
    26881 tgaaggtaaa atattttcga ggatgataat aggactaaga ttataagttc caaacaattt
    26941 attacgccat ttaatttctg cttgaacact taaaggtctt tttaaaaaat cttcaaaatt
    27001 tttccatttg tttttaaaaa atgcattaaa acgccaaaat tccactaaaa ctatttcatc
    27061 tttagtactt ctataaaagc cttcttttaa attttgtttt aaattttcct catccaaaga
    27121 aaatcttgta taagcgtttt taaaatgcga ataaaataaa atatgagatt taacgggctt
    27181 tttatctaat tttatcaaag cacttaaaag acgataattt aaaaatttct ctcttaaaat
    27241 ttcaaatttt ataccttttt tttcccataa aactactttt ttataaagag ctattcttgc
    27301 ttctatactt gcaggtaaaa tttgcttatt tacaggagac attaattcat caataaaatt
    27361 cttatcttgt ttttgttttt taagcccata aatgcagccg caatagtttt gatgataaag
    27421 catttccttt tttgctaaag caaactgtct ttgagtaccg ccatttttac gaaaatcagg
    27481 agctaaaaac tctactccat aaggctcaca ttctttttgt aaagcatttt ttaactgttc
    27541 taaatctttt ttagggctgg ttaaaagcgt agtagtaagc tttttttctc ctattttagc
    27601 agcaaattta acactagatc ccattcttac atcaaagcaa atttcacacc ttgcaccctt
    27661 ttcaggctca tcttcataac cacgcacagc attaagccat ttttcatact catactcacc
    27721 tttataaagc ttaataccaa gtttatcaca agatcttttt acatctaaaa atcttagttc
    27781 gtattcgctt aagggatgga tatttggatc ataaaagtat cctataattt tttcatcagg
    27841 ataagtcttt ctaagttctt caataaaata atgactatcc acactgcaac aaatatgcac
    27901 caacattaaa gactttcaag cacttttaaa gcatgatctt ttacacgaac attactataa
    27961 atttgagcaa tcctacctat ttcatcaata acaaaagtag agcgaataag accttcgtat
    28021 tcttttccgt aatttttttt aagcccccaa gctccataag ctttagcaac ttctttttca
    28081 ctatcgctaa gtaaaatatg ttttaaatca aatttagaga taaatttttc atgacttgcc
    28141 acgctatcag gactgatacc aataatcact gcatttttac caccaaattt atcataattt
    28201 gcgctaaaat cacaagcctc tgtagtgcaa cctggagtat tatcttttgg ataaaaatac
    28261 aaaatcacct ttttgccaat aaaatctttt aatgctattt ttaccccatc ttgatttaaa
    28321 agctcaaact gaggtgcttt atctcctatg tttaaactca tttaattgcc tttgctttga
    28381 tagcttcaac gctttctccg ccaaagccta tgtcataatt ttctacatct tctaaaacca
    28441 ccacaactct ttctttactt ttattatatt tcgtgcttaa aagtttggta atatcagcta
    28501 taagctccgc tttttgttcc ttgcttaaag acggctttgc taatttaata tttactaatg
    28561 gcataatttc tcctttttaa cgataatttt tcataattat ttcaaaaaat acctaatatt
    28621 ttttttaaca aaaaac
//
LOCUS       DAQSLY010000008        26547 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.008, whole genome shotgun sequence.
ACCESSION   DAQSLY010000008 DAQSLY010000000
VERSION     DAQSLY010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.008"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(172..1688)
                     /locus_tag="R2H98_000266"
                     /pseudo
     CDS             complement(172..1688)
                     /locus_tag="R2H98_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(1698..2736)
                     /locus_tag="R2H98_000267"
                     /pseudo
     CDS             complement(1698..2736)
                     /locus_tag="R2H98_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895311.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2892..4334)
                     /locus_tag="R2H98_000268"
     CDS             complement(2892..4334)
                     /locus_tag="R2H98_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEE9023192.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIGQNESVNFNGKNQNYLNIAYQKDASKIDGALNRGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTALSDDNVKTFLEKGASFSPAFDVSKQGNIIN
                     LGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEVII
                     QQSITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKF
                     RTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFG
                     VVQNSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVNDLVINTAVNTK
                     VGGIIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIE
                     KLITSGNDSKTGGFTGKVGNLKINNAYLFL"
     gene            complement(4346..6274)
                     /locus_tag="R2H98_000269"
     CDS             complement(4346..6274)
                     /locus_tag="R2H98_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023193.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISNNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILSNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            complement(6204..6921)
                     /locus_tag="R2H98_000270"
                     /pseudo
     CDS             complement(6204..6921)
                     /locus_tag="R2H98_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            7249..8004
                     /locus_tag="R2H98_000271"
     CDS             7249..8004
                     /locus_tag="R2H98_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEE9023194.1"
                     /translation="MKKILSIALVALVGLFLSACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(8028..8666)
                     /locus_tag="R2H98_000272"
     CDS             complement(8028..8666)
                     /locus_tag="R2H98_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEE9023195.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(8663..9652)
                     /locus_tag="R2H98_000273"
     CDS             complement(8663..9652)
                     /locus_tag="R2H98_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023196.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(9656..10435)
                     /locus_tag="R2H98_000274"
     CDS             complement(9656..10435)
                     /locus_tag="R2H98_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023197.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(10436..11275)
                     /locus_tag="R2H98_000275"
     CDS             complement(10436..11275)
                     /locus_tag="R2H98_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023198.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(11272..12081)
                     /locus_tag="R2H98_000276"
     CDS             complement(11272..12081)
                     /locus_tag="R2H98_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEE9023199.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSEIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(12078..13403)
                     /locus_tag="R2H98_000277"
     CDS             complement(12078..13403)
                     /locus_tag="R2H98_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEE9023200.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYISKKDVFWVI
                     SDNGLGKKYNSYDSMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGADFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVIENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(13414..14460)
                     /locus_tag="R2H98_000278"
     CDS             complement(13414..14460)
                     /locus_tag="R2H98_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEE9023201.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITLGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            14577..15560
                     /gene="corA"
                     /locus_tag="R2H98_000279"
     CDS             14577..15560
                     /gene="corA"
                     /locus_tag="R2H98_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEE9023202.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            15581..16123
                     /gene="mog"
                     /locus_tag="R2H98_000280"
     CDS             15581..16123
                     /gene="mog"
                     /locus_tag="R2H98_000280"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEE9023203.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(16120..16305)
                     /locus_tag="R2H98_000281"
     CDS             complement(16120..16305)
                     /locus_tag="R2H98_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEE9023204.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            16433..17620
                     /locus_tag="R2H98_000282"
     CDS             16433..17620
                     /locus_tag="R2H98_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEE9023205.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFNFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYAFFYLSHPSISDRIK
                     ALS"
     gene            17617..18432
                     /locus_tag="R2H98_000283"
     CDS             17617..18432
                     /locus_tag="R2H98_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEE9023206.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFKLIRRFKSGEPFEYIFEKVDFWGLEFKIKKGILIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIILAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFVAKFTNMRYDKK"
     gene            18445..18915
                     /locus_tag="R2H98_000284"
     CDS             18445..18915
                     /locus_tag="R2H98_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEE9023207.1"
                     /translation="MKAVNLFLLASIIGIELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENTTKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            18954..19703
                     /gene="flaC"
                     /locus_tag="R2H98_000285"
     CDS             18954..19703
                     /gene="flaC"
                     /locus_tag="R2H98_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEE9023208.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            19738..20370
                     /locus_tag="R2H98_000286"
     CDS             19738..20370
                     /locus_tag="R2H98_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEE9023209.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(20382..23984)
                     /gene="dnaE"
                     /locus_tag="R2H98_000287"
     CDS             complement(20382..23984)
                     /gene="dnaE"
                     /locus_tag="R2H98_000287"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEE9023210.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTGEYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            24213..24419
                     /locus_tag="R2H98_000288"
                     /pseudo
     CDS             24213..24419
                     /locus_tag="R2H98_000288"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rdx family protein"
     gene            complement(24432..24761)
                     /locus_tag="R2H98_000289"
     CDS             complement(24432..24761)
                     /locus_tag="R2H98_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEE9023211.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(24758..26098)
                     /locus_tag="R2H98_000290"
     CDS             complement(24758..26098)
                     /locus_tag="R2H98_000290"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEE9023212.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(26122..26535)
                     /gene="uraH"
                     /locus_tag="R2H98_000291"
     CDS             complement(26122..26535)
                     /gene="uraH"
                     /locus_tag="R2H98_000291"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEE9023213.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
BASE COUNT         9139 a         4533 c         3430 g         9445 t
ORIGIN      
        1 accccaaagt taaaagtatt tttctaggct tgcataaact cttgctcgat gttctccatc
       61 gtgtttaaac cgatgaacag ctcttgcagc atccattttt acataaaaat tagcacttct
      121 tgtatagagt atttgtatac ccattgcatc cataagataa tgattttcac tttaatattt
      181 tttattttca taccaagaat accctatatc ataaaaagga gtcgagtaaa gcccttctaa
      241 aggtgtttga aatcttattc ccaaggcgcc agaaacaaca ttatccgcac ttccctcacc
      301 ttctaaacaa acacatatac cacaaggtct acctaaagat acggattcac tactatctaa
      361 aacagcatcg ctgataactt tttgataatt aagttgaaaa atgtgagtta agcgttctta
      421 gaattgatat ttgttgctta aatttaaatt catttttcca aaatttccta aatttactcc
      481 attaaatcca gaaaaatcac catcattttc aacattacca tatataaaat ttaaagtata
      541 acttaggaca ttattctcca aacctctata agttctttct atgcccaaat ttacactatt
      601 tctcgctttt tcattgctta ctaaaccatc aagataataa tctttaatct ttttatgagt
      661 aaaacccgaa acaagatata aagaatactc agtatataaa aacacaggat aagaaaaatt
      721 tactccaaca ttcatagagt ccctataaaa actaagattt ctataaattc tgccaggaat
      781 ataatgtcct tgagttgcaa atagagtaat ttttaaattc cctataaaag tactataatt
      841 aatcccataa tctgtttgat ttttatcact atcttgaaga taaaaattta agttatcccc
      901 ttatcttgct atattgttta aactttgact cattcctgct ctaaaacgac ctgtttcttt
      961 agtcccatag ttgttagaat ataaagttaa agttacacta tctcgccttt gtttacttct
     1021 ataataacat cgctttctcc acaaccatca cctgattgta aattagcatt ggtttggatt
     1081 ccgtatattt cattgatttt ataaatttca ttttccacat ttttagttgt gataactttc
     1141 cctttaagat ttttgttcaa tttactctct aaagcataat ctctgacacc taagttgttt
     1201 ttaatgatta cttttcctaa aagttccaaa agctatgtta atttgcactt tgttagaact
     1261 taaatcttgc ggtggtatat aagcagttgc cgaaggatgg ctacttaatt gacaataata
     1321 agctataatg tttgttatat cttttaaaat ttgtaagctt aattcttggt tgcgatattc
     1381 agctattgca tcttgaattt atttttcgct aattcttaat tttttaaatg tcaaatcttt
     1441 attatcgata tgcaaaacat actctcttac aaaaacctta gcttcatttt gatcagtttg
     1501 taaatttgca atatttgtag tattttgctc tttaaaattt acagggcttt tttgattttt
     1561 taatgtattt tttaattttt attttgtagt ccatttgctt cagaagagct ttctataagc
     1621 tctcttattt tattattatt tagctcttca gcatgtgaaa atacttgcaa taagattaaa
     1681 tttctcattt ttatttccta ttttgcattt acacaaatgt tcattgtctt aaaattatca
     1741 cttacaatac aacgcaaacc actacttcta gcatctgctt ctcctatgtc cacttgatca
     1801 tcatcttctt ttttttgtgt ctactttagt ttgaattttt ataggagctt ctacaacctt
     1861 ttcaggaatt tcaggcggca atacagaagg tttgtctgga tcttcacccc ctccctcttt
     1921 tttttgttta tctggctcat agatagatat atttgatttt tctggcaatg aggctaattt
     1981 tccttcaaaa ttatattttc cagtgtacac tttaccatct acatcgcttc catttatagc
     2041 aaaaccttga gaatttagaa tctcattttc aagcttatag tgaaatcctt catttccact
     2101 aagatccgca aactgctttt caagagcttc tttttgttct aaaagttttg catacataac
     2161 tctaagcgtt tcatcgctaa ctaagcctga ttctttgatt ttttcatagt ttttattttc
     2221 tttgtcaagt tgagctaagg cttcttggta tttttgtaat tcttctttaa aactagcgaa
     2281 acaacctttg ccggttttga ttttatccat agcagttttc ttttgcgtcc atttttcata
     2341 aagattggta taatttttat aactttgttc ttgcgaacct tgccataact ttaaaaattc
     2401 ttgttctact ccagtatctt taaatgtatt taagaaattt aaactttgag tgatctcact
     2461 ggcttcattt tcccctgcca cacccttgct atctgcgtaa atccaagttt tggtatcaaa
     2521 atcataagtg tattttccat tcatcaaatc atctaaaatt ctttgaagca atttagggtc
     2581 aaagtcgtct ttggataatt tcacagcatc tgttaccttg gtaaaagaat cagcaaaagc
     2641 ataagaatta ttatcaagat attttatatc gttaaatttc tttcttacag cactatcaaa
     2701 atcttttttt tctgttactt cattattata ttgcacagac ttaaaaaatt ctgtccttca
     2761 tcaatgtaac cattttctaa attatgataa acataaatat tactaaaatt attatttaca
     2821 ctaatccagg atcaccaata acttttccag cttgtgtttt atagtttcca gcgctcaaaa
     2881 ttgctccatt tttataaaaa taagtaagca ttattaatct ttaaatttcc aacttttcca
     2941 gtaaatcctc ctgttttact atcattccca gaagttataa gtttttctat gtcattaacc
     3001 acaacattat taaaattacc accatcaatt tgtctgccta tgccacccac ataagaacct
     3061 tcttttgcta ctatacttat attattaata gcaacatttg taaaattgat agtgttattc
     3121 cctccactac catttcccca gcctattatt ccgccaactt tagtatttac agctgtatta
     3181 ataacgagat cattaacagt cacattttca aaacccgtat aactgtttgc aatattttgc
     3241 cctactatac ctccaacata agcatcataa ccagttgaag caattttcaa tccttgaata
     3301 ttaaggtttc ttatatagct attttgaaca actccaaaaa ttcctacata ttgatttgat
     3361 gaattaatat taacattttt taaagcataa ccagaaccat cgaaagattt agcaaaagca
     3421 ttgcttgtat tatcacctac tatgtatgtt ttcacgccac taaaatcaat atcatcaatc
     3481 aaacgaaaat gatcaaaagc tgttctaaat ttttctttat ttacattcca aaaatcagca
     3541 aatttattcc attctgttgc atccgcaata cttccatatt tagtccagtt tttaacttta
     3601 ctactatcat caaaactaaa tttactacta gaattaccca ataaagctcc attttcttca
     3661 aaacttgtta tgctttgttg aatgataact tcttgctctg ctttggctac gatatttttt
     3721 gtatctttta ccactccagc atcaacataa actttattac cttcaagttt taatacatcc
     3781 aaagtaattt ttcctttatt gatttcaacc ttatttccta ttaaaacaat attatctgca
     3841 ttgatctttc caagatttat aatatttcct tgtttgctta catcaaatgc cggagagaaa
     3901 ctagctcctt tctctaaaaa agttttgaca ttatcatcgc ttaaagctgt tgtgctagct
     3961 acaaattttc ccgcagtaat agttcctgtt ttgccaatca aaactcccat aggattaact
     4021 aaaaagatat tgttattccc tctatttaaa gctccgtcta tcttagaagc atctttttga
     4081 taagcaatgt ttaggtagtt ttgatttttg ccgttaaaat ttacactttc attttgtcct
     4141 atattaaaac cgccacccca ttggataaca tgattttgtc cttttcctgt aatcgttaca
     4201 gtattgccag aggtatggat agtcccactt gtaccatgag tgaatttacc tccttgtggc
     4261 aaagcataag cttgagaaaa gagcaaagaa ctcaccgcaa atgataaaac tatatgttta
     4321 ctcatctttt tcatgttact ctcctttaaa gtatgttgat ataaattatt tttgcatcat
     4381 ctgaaacttc aaagctaaaa tttacatttt tcaatgtact tttagccaac ttttctatct
     4441 tgttgtaatt aaatttattt ttattatttt tcattttttc taacaaattt tctaattctt
     4501 gttgatttaa caatctattg tcaccatcat aaattccaac atcactttgt atgagaatat
     4561 attttccttt tgttggttta tttttagtaa gaatttccat acttccattt gaaggaagat
     4621 ttataagttt ttctatagtc aagataggat tttttatttt atttgataaa ataaaagtaa
     4681 aattttcaaa gttatttacc acttctgatt tgacatcttg agtatctata atcaaacgat
     4741 tatttttaga aaaatcttct tgatgcggta gaatttgagt gattattttg ccttttttat
     4801 ttacttcatg aaaaacagaa ccagaaagca aatcgatatt tacatcttta aagaaattta
     4861 actctccacc taaatataaa gtattgttat aagatttaaa atttgaaata tccgaagttc
     4921 cagatggagc taaaaatata gcatcttgat ttttatactc atctatattt aaattaacaa
     4981 gctccatgat attatcatga gaatttgcag acactccagc tatcaacccc acataacctt
     5041 gtcttttatc tgaggcagta ctaaaaactg tgttgttgat gatgatttta ttaaaagcac
     5101 tttctttatc tgcttttatg atgcacgaac tttccacggc agccgaagaa caatctttaa
     5161 gctttataag attgttgttt gcattttgag ttgcttttaa aataattttt gagccctttc
     5221 ctaaagaact cgcttcggtt aaactctgaa tgagattata atttatttta ttatttgaaa
     5281 catttttagc attgatcatc aaacttaaat ttttagatga tttaatattt tcaaaattta
     5341 cttcattatt gtttgattca tcagcgatat agtctatacc atctagcgta gtttcacttg
     5401 taataaaagc atataaaggc aatgaaataa cagaatcttt tatacttaag gtattattat
     5461 ttgcttttcc acttaaagtt ctagctgcat atacagtaaa tttatcagaa taattttgtg
     5521 gaactttttc ataggttaaa tcattttgta tatcaataat attaaaattc gcaccctccg
     5581 tagcaaaacc tccgtaaaga ttgtaataat tttttccata aaaattatta ctgattttta
     5641 aaggtttttt aagacgaaat acaattttat ttccattagc ttcaccatcg ttagaatacc
     5701 caccatagag gtttaacgat gcatgtgttt taatgttttt atcaagatga tctaatgagt
     5761 taaaatgata aacttctata gaatttttct ctgcattacc ctgtaatgtt cttccaccgt
     5821 aaatttctcc aaataaaaca gcatcataaa aagttatttt attttgcgaa tttaccatta
     5881 aatctaaatt taaattttta attattacgg aatttttact tacattgtat tttttaagat
     5941 tatttacatc agctaaagca cctaaaattt caaaggtcga acgagctgta tactcaccat
     6001 ctggcccatg aaggacgata ttggctgaat cgataagaac tttattgttt tgtaaattag
     6061 aatttatgcc aaaagctccc attaaacgag taattctttc atcataaata tccttacctt
     6121 cttcatctga aaaatactgg gaattatgaa ggtcaatttt tgtatttgac tctaagatta
     6181 atttattgtc tttagcttca ccatcaaaag ctacagatcc tgaaatataa ggagctccat
     6241 ttaagggcaa ggtgtagata ttttctacac ccattattga tataggagtt ttcttttaaa
     6301 atggtttgat tgttaaatcc ccctccctgt cagtaaacgc cgcagtaatt aaatacttaa
     6361 aacgatcgcc tttttgagaa ttattaggta ctccacaatc ccctatgctt ggtttgcaaa
     6421 aatacacaga agataattct ccattttcta atataagttt attatttgtt gcatttgtat
     6481 tttgagcata agctgttaca ataaaaggta taaaagaact aggaacagct tgagtatctg
     6541 aagatacggt tcctaaagtg ctaaaagctg ttatgatctc ttcttttgaa gtatccggag
     6601 ttaaaatttc aagcttggat aaatttttat ttccagattt agggttatta taaatcatag
     6661 ttaaatttga tatagggtat tttgacttag aagcatagaa attttttcca ttaatttttt
     6721 taaaaatttc tgcttgagga tcataaactt gattatcctt aaaagaatgt tcagaaatat
     6781 aaaaattttt ccatccttgc ttgtagcctg aaccgccgca aaacaaaccg aagaagataa
     6841 aaccacacta caaacgccca agctaaattt tgcatttgtc ttatttgtaa aaattttaaa
     6901 aatattaaaa tattttttca tctcatttct cactaaaata aaatcccttt gatttatcgc
     6961 aaattgatca tttgcaacac tatcccgtat atcctgagtt gattataaaa tattaatttg
     7021 atattttatt cttcaatatt taaatttaat gaaaatttaa caaattttat attaatatat
     7081 tcttaaataa aattttattt taaatattaa aaaaatactt ttataattat ttaaatatca
     7141 tctaaaagca caacattaat ataacttttc taaaaattga tccagactta attaaatata
     7201 aatttaaaat aagtataatt ttaaaacatt ttatatcaaa ggaaaaaaat gaaaaaaata
     7261 ttaagcattg ctctagttgc tttagttggt ttatttttaa gtgcttgtag tgattctaaa
     7321 aataaagaat caaatgcaag tgtagaatta aaggttggaa ctgctccaaa ttataaacct
     7381 tttaattata aagaaaactc aaaacttaca ggttttgata ctgatttggt tgaagagatt
     7441 gccaaaaaaa atggtattaa aattgtttgg gttgaaacca atttcgatgg attgattcct
     7501 gctttaaaag ctggcaaaat cgatatgatt gcctcagcta tgagcgcaac tgatgaaaga
     7561 agacaaagtg ttgattttac caaaccttac tatatgagta aaaatcttta tcttaagcta
     7621 aaaaacaacg actctcttca aacaaaaaat gatttagaag gcaaaaaaat aggagttcaa
     7681 ttaggaactt tacaagaaaa tactgcaaaa gctatcaaaa atgcacaagt acaaagcaat
     7741 aaagatttaa acatagctgt tttagcacta aaaaacaaca aaatcgatgc tattgtagct
     7801 gatcaagata ctgctaaagg ttttttagct gaaaatccag aattggtaag tttctaccaa
     7861 gaaacagatg gaggagaagg ctttagtttt gcttttgata aaaataaaca aaaagatatt
     7921 attgaaatat ttaacaaagg catagatgaa gcaaaaactg atggatttta tgatacttta
     7981 attaaaaaat atgaattaga ataagcgtga attttcacgc ttatagctta aaaagttaaa
     8041 atttcatatt ttctctcttt tgcaattttt aaaatttttt catcgccatt acatacaaag
     8101 gctttgctaa cagactctag taaaggtaaa tcattgatag aatcactaaa aaaataagaa
     8161 tctttcatcc atttttcata atctttaccc aaatattcct taagtcttaa aaccttgcct
     8221 tccttaaagc tataaatccc gtaagctttt ccactaaatt tatcacccac acgctcacat
     8281 tttatggcta tgctttctct cactcccaaa aaagaggcga tttttctaac taaaaattca
     8341 gccgtagctg aaattataat acacctttga tcttgatatt tgattataag ttctttagct
     8401 ttttcataag gttttatata aatttttata aattcatcta ctaaagatga aattctatct
     8461 tcatttttac ccttaacact ttgaagaaaa aaagtcataa attcatccat atcaagcttt
     8521 ttttcttgat attgtttttg ataaaaaacg attttttcta aatattcttg aggtaaaaaa
     8581 cctttttcaa cacaaaattt aagccaaagt ttagcactat cgccttgtat taaagtatca
     8641 tctaaatcaa ataaaacaag cttcatttta actcttttgc taaagaaaga ttgaatttta
     8701 aagcgatttt atcacctgct tcataagtac tatgagtgct aaaatttaaa gtatctacct
     8761 taaattcaat ttcttgcact ctaaccctat agcgtatgat attacctagc aatgattttt
     8821 ctttgatctt agcctctaag ccttcgttag aaatttctat ggtttcagga cgcaaggcta
     8881 tatctttttt aaaatcgtgt tttaaaccca agctatcaag ctctttaggg cttaaaatat
     8941 tgtaatttcc tataaagcta gccacaaaat gagattctgg caaaagataa agattgtttg
     9001 cgttggaatt ttgtatgatt ttaccctcat tcattaaaat aatcctatcg gataactcta
     9061 aagcttcttc ttgatcgtgc gttacaaaaa tagtggtgag ttcaagttct ttttgaattt
     9121 ctttaatttg cacccttaaa tgcttacgaa ttttagcatc aagtgccgat aaaggctcat
     9181 caagcaaaag taaatcaggt ttagtcacca aagatcttgc taaagccact ctttgcattt
     9241 gtccgcctga aagcttatgt ggataagttt tagcgtattc ttcaagctcg acgagtttta
     9301 acattttttt cactcttttt tctatgtcct ttttatccat ttttttgatc tttaaaccaa
     9361 aagctacatt ttcaaaaacg ttaagatttg gaaaaagagc gtaattttga aaaaccatac
     9421 ctatatttct tttttgagga cttaatttag taagatcttt atcatttaaa gaaatttttc
     9481 ctccattaat ttggctaagc cctgctatac accttaaaag agtggatttt ccacagccac
     9541 ttgggcccaa aagggttata aactcaccct ttttagcact aaaattaata tcttcaaaaa
     9601 taattttatc cccataagct tttttaaaat ttttaatctt taaataagcc attttttact
     9661 ccttaatcaa actagctata aaagttgtta taaaaattaa cacaaaataa actattacca
     9721 aagcactaga ataatgccca ctttgatttt tgatattata aagataaact tgcaaagtct
     9781 cataagcact tcctacaaga atatttgcgt ataaaaattc gcctattaaa aaagaaaaac
     9841 ttaaaaaaac tgccaccaaa attccatttc ttaaattagg caagacaagc ttaaaaatcg
     9901 ctcccattaa agaacctcca agcatagcat tagatgcgat gagttcattt aaattgacat
     9961 tagacatagc attatctaaa gccctatata taaaaggcaa agctatagta aaataagtaa
    10021 aaatgagtat ccaagctgtg cctcctatat tgtcagcata aagttgcaaa agccccacac
    10081 agctaactat aggaggtaca gcaaaaggca tgataataag tatatttaca aaggctttta
    10141 attttaaaaa ataataattt agcacaaaaa ccaaaggaaa aacaagaatc acagaaagta
    10201 aaatactgcc cacacaaaca agtaaagaat gccaaagagc aagtaaaaat ctttcgtcat
    10261 gaaaaagttc ttgataccat ttaagcgtaa gatcatcagg caaaacactt acaccccaag
    10321 aagtggaaat agaatataaa aaagtagcca ttaaaggcaa agctaaaaac aaaaaaacca
    10381 aaaacaaaac tgcataatga taaattttag cttttaaact caaattttca ttcatttaaa
    10441 gcaccttaaa attatatttt ttagaaagga aattggctat aaaggtaaca acaagcatga
    10501 taatagttat aatgatactt aaagcactag ccatataagg atcaagattg atatcgcctg
    10561 cgattaaagc agcgattctt acaggagcga cattaaaatt tcccgaactt aaagcataaa
    10621 tagtcgcata agctccaaaa gcattggcaa ataaaatcac aaaaacacca aacaaagcag
    10681 gagcgagcaa aggcaaagct atttttaacc aatataaaaa attgcctcca cctaacattt
    10741 tacaagcatt taaatgtgaa ttttcaagac ttttaaaagc tggaagcaaa agcaagatcg
    10801 ccaaaggaat ttgaaaatac acataaacaa tatttacccc gaaattagca taaacactaa
    10861 caaaaggctc tatacctaaa ttcttcaaaa acacattaac tacaccattg cttccaagaa
    10921 ctataatgaa agcaaaagct aaaggaactc ctgaaaaatt acttatcatg gtatttaaag
    10981 aaaaaagaaa tttacatatt tttgatggag ctaaaacaaa taaagaatag ctcgccaaaa
    11041 gccctattaa aagtccaaaa atactagaaa taaaactgat ttgtaaagaa tttataatgc
    11101 tttgtagata gaatttggac tcaaaaatat gtataaaatt ggctaaagaa taaatttcat
    11161 cctcttctac ataaaaagca ttaaaaacaa tccaaatcaa aggtgctatc ataaaaaaag
    11221 taaaaactat aaaaaaaggt aaaatactta aaaaggctag aaatttttct ttcatttttt
    11281 ggcctttaaa atttcatcat tatatctctt atcgtgttta agtcctaaaa tttcacagat
    11341 actgccacaa atttcatcct gttttatctt ggcattttca tacgaaaaag cactaccaaa
    11401 agtgaaaaaa ggcactaaaa tttcatcttc acttaagcct ccatgacttt taccctctgt
    11461 cataccatga tcgcttgtga tgattacatt aataccttgt tctaaccaag taggcaaata
    11521 ctcagaaatc aaaatatcaa cttttttggt tttattagca tactcaatag agtgtgagcc
    11581 aaatttatgt cctgcatcat ctatattcat agaatgtata agagtaaaat ctagattata
    11641 tttgtttctt aaatgctccc catctgcaaa taaatgagaa tctaaataat catcttcata
    11701 ataaaaatgt ccataaggca aagttaaatt ttcatcttct atgtggcgat gtaaagaagg
    11761 aataaattct tttttattat aaagctcaaa aacccaatga taagctgcgc ctccagcttt
    11821 taagccttgt tctttgcaaa ggtcaaaaat gcttgtttgt tttgaaaaac tcaatttatt
    11881 attaattatc tcacttaaaa caggctttac gcctgttaat aagcactcgt ataaaggacg
    11941 agacatacta ggaagttcgc attctaaaga ataaaatttg cctaaattct ctttgcaaag
    12001 cgcatttaaa tatcccatat ttatactagc acttttgcaa tttaagccat caagcacaac
    12061 taaaataact ttggacatca tttactcttt aaaaaatctt ttacttcaag caaaataaac
    12121 tcattatcat cagtcttatt aggttctcta cttgaagaat aaggaaagtt attgtcattt
    12181 tctataacta tatgagagtc atctactata tccacacctt ctatggtttc aaaaggaaaa
    12241 acaaatttat catttaccaa aggcttttta gaaattttat ttctatcctt aatatttaaa
    12301 agatctatat aagaaatttt ttgagcttca tgagttttat catctaattt aaccttataa
    12361 attcttttaa attgagctac attattaaaa caatgcttag tatcttcacc ttctttgcaa
    12421 gccttatctt tagtgccttc tttttgatct ctttctatga tgatgccgta tttatcatct
    12481 atcatgttaa aatcacctat ggaatggctt ttatcttcta agaaatattt ataagttttt
    12541 ccagtgaatt ttttattttt tacatcaaat tctatgattc ttagatattc tttacctttt
    12601 tcattctcat aagcgttgtt attataaatg cttccttcta aaagcaaata aagtttagaa
    12661 ccatctttag agcttgccat agcttcaaag cctttagaac gcttgatatt aaatttctca
    12721 ttttctccat caggcttatc gctaaatttt aaacttggat tatcaggaga aataagtttt
    12781 ttaccctcca catacacatc aaaaacttct ttcaaattcc cattcttatc aaaatgaagc
    12841 aaataaggac caaattcatc acctatataa aattcatcat tgataacctg tatactctca
    12901 gtatcaaaat cagccccact taaatacctt tctttagttg tttcggtggt tataggatag
    12961 gggtattttt tatcactatc tttaaaaaaa actgttttta aaagttcgta ttttgagttt
    13021 ttaaaatcaa atttaaactc gtgagcataa agcatagaat cataagaatt atacttttta
    13081 cccaagccat tatcgctaat tacccaaaaa acatcttttt ttgaaatata ttttatccca
    13141 ctatgtcctt gtataggttg atttttaaaa ggtaaataaa aatctgtttc cctgtttccc
    13201 ttagatttaa aagttccaat tttttcttct ctagtgatat ttgcaaattt cccataagtt
    13261 ttaaaaaaat caggagcatc cttaggaggt tttactgtac ttttagaatc tatgataata
    13321 tgccctgcta aattggcctc atactcttga actccaaata aaacactgca aagcatagca
    13381 cttgttaaaa taaccttttt catccaatct cctttatttc atatccacta taactttttc
    13441 ttgccaaagt tgtggtagtt ctttagcgct tttttcccaa gctttttgat ctttgattgc
    13501 tcttgcattt ttgtattgct cacttggtaa aagtttggct tttatatcat ctggcaaggt
    13561 aatatgatca attcttattg gccttgcata accttttgct agattgattt gtcctttatc
    13621 agaaagtata aactcacggg ctaatttagc tgcgtttgga tgttttgcgt atttattgat
    13681 aatagttgta taacccgaaa taacactacc atcagcaggg attaaaactt cataacgatc
    13741 tttgcccact ttatctctat agcctaaacc attaaaatcc caaactaaac ccacttcaac
    13801 ttcacctttt tcaagattgg ctatacttac atcattattt acaagtcttc cttgtttggc
    13861 caaagtatta aaaaaagcta aagcaggact taaatctttt tcatccccac ctaaagcata
    13921 atttgccgcc aatactgcac tcacagcttg agccgctaca cttacatcac ctaaggtaat
    13981 tttataattt cccttaagca aatcttgcca agttttaggt atatctttta ctacatcttt
    14041 attgactata aaagctatgg ttcctgtata agctaaaagc caatttccat ctttatcttt
    14101 agcccaagtt ggaatttgat cccagtaact tgtcttaaaa ggctgagcca ctccttgttt
    14161 aaccgctatc tctccaaaag aagcccctac atcccctata tcaccgcttg catttttctt
    14221 ttcggcttta aatttagcaa tttcttgagc tgaactcata tctgtatcac tatgttctat
    14281 gccataaaga tttttaagat ctgcccaagt atccttccag tttgcccaag tatcaggcat
    14341 agctaaagaa tttaccctac cttctgcttg cgcagcttta atcaaattct catcaatagc
    14401 ttgtgaattt gaaaacaata aagcaacaag acctaaactt aagaaaaatt tcttactcat
    14461 ttttttcctt tcaaaaaata ttttggaaat ttaatgagtt ttagaaacat tttagaaaca
    14521 agttaatttt taagcaaaca aggttataat tttaaagtca taaacaagga gcgatcatgc
    14581 tttatattta tatcaaaact caaaatgctt tagttcaaag aatcaatttt aatctcgata
    14641 gtcaagaact accgcaaaat attttatgga ttgacttact tcatccaagt gcagcagaaa
    14701 ttgcttttat atcaagtgaa tttaatcttg agtttcctac aaaagaagaa agggaagaaa
    14761 tagaacttag cgcaaaatat tgggaagata atgcgacaat aaccatcaat gctcattttt
    14821 tagtaagaga tcttaaaagt gatgaagaag ataggaattt aatcaagctt cgcacagaaa
    14881 ttgttacttt tgctaccgct aaaaatatct tatttactat aagatataac gaatttagca
    14941 cttttgaaga aattcaagca aggattttag ctagtccaaa gaattttgaa gatggttttg
    15001 atattattga taaaatgttt gaagtgcgcg ttgaaaaaga tgcggattta ctagaatgga
    15061 tagataaaga agcaagacgc ttaagaacaa gtgttttaga aaaaaaagat gaatatagtt
    15121 atgatgaaat gctaaaggat atttcaagtt tacaagagct taatatgcgc gtaagagatt
    15181 ctttgtttga taagcgtcgc gctatgactt ctttgctgaa aagcgataaa atcgataaag
    15241 atataaaaca aaatctcact atagttttaa aagacttaaa ttctttggtt gaatttagtg
    15301 tttcgcaact taatatctta gataatatcc aaaccatttt agccagccaa atcaacatag
    15361 aacaaaacaa aatcattaaa attttcaccg ttgcaactgt tgccatgatg ccacctactt
    15421 taataggaac tgtttatggt atgaatttta aattcatgcc cgaacttgaa cttcactatg
    15481 cttatcccat agtgcttggc gtgatggtaa tttctatcat tttacctttg gttgttttca
    15541 agaaaaaagg atggttataa aaatttatta aggagaaata atggatacaa taaacatagg
    15601 aattttaacc ctaagcgata gagcaagtag tggtatatac gaagataaag ccactgctga
    15661 aattgaaaga gtgttaaatt catatataaa aaatgatatt atttatcata aagaattaat
    15721 ccctgatgat tatgatttaa tcattaaaaa attactttat ctagcagatg aaaaaaaatg
    15781 cgatttgatt gttacaagcg gaggtacagg tccagcactt cgtgatgtaa ccccagaagc
    15841 cacggaagcc gtgtgtgata aaatgatgcc aggttttgga gaacttatgc gcttagaaag
    15901 tttaaaatat gtcccaacag ctatactttc aagacagagt gcaggaattc gcaataaatc
    15961 ttttatcatt aatttaccag gaaatcctaa ggctataaaa gaatgcctag agcctgtttt
    16021 tccggctata ccttactgta tcgatttgat agaaggtgct tatatagaag caaatgatga
    16081 agttattaag gtttttcgcc ctaagaaaaa atgtcaaaat taaaatttat tagctctgat
    16141 aagtctgctt aattgtctag caagcagact tgccgaagct tcatctttgc ttatcttttg
    16201 cactttattt ttaaacttac aaagtctgtc atctaaaatc acatcattga ttggaatttt
    16261 aggcttttct ttttgttttt gtgaaatctt tttcttaaaa aacattcttt aatccttttt
    16321 ttataaatat acaccaactt agttgaaaag aatattattt tagattttaa actattaact
    16381 ttatttcatt attttaagct agaattcgca aaaaaccaat caaggaaaaa taatgacttt
    16441 aattgcaatt ttatgtcttt acacagcact tttatcttgg atttcctatg ctcaaattcg
    16501 tttcttagaa agagaaaaag acaaacaagc tcaaatttta agcgaaaaag actatcaaaa
    16561 tgcagcagat attgccatcg aaaatgaaaa atttaaacta ttttccaatt tttataattt
    16621 aatcatcaat attgcatgga taggttttgg atttttatat cttaaagaat tgcttatctt
    16681 aaacaacact cgttttgaaa atactttatt tttattatct tttttaataa tcacaagtat
    16741 tttaaatcta cctttaagta tttatgaaag ttttatcaaa gataaagccc atggtttttc
    16801 aaatatgact gtaaaacttt ttatcaaaga cactatgaaa agtcttattt taactttaat
    16861 atttggattt ttaatccttt atgctttgct tttttgctat gatttttttg gaactttttg
    16921 gtggattgcg gcctttattt ttgccttttg tattatagtg attataaatc tcatctaccc
    16981 taccttaata gcacctattt ttaataaaat gaaaaaacta gacgatgaaa atttattgaa
    17041 aaaaatcagc tctttaatga aacaatgcgg gtttagtgca aatggggttt atgttattga
    17101 tgcaagcaaa agagataagc gtttaaatgc ttattttggt ggacttttta aaagcaaaag
    17161 agtggtgctt tttgatacat tattaaaagc cttaaatgaa agagaacttt tagctgtttt
    17221 aggacacgag cttggacatt ttgttcataa ggatattatc aaagctttat ttaacggcgc
    17281 tataactatg tttttacttt tttttgtttt tgcaaattta cctgaatttg tttacttaga
    17341 aagtcatcta gaaggagtaa atggcggtgt gtttgctctt ttatttatct tggcaaatat
    17401 ttttaacttt ttaatctctc ctatgcttaa tgccttaagt agaaaaaatg aatttgcggc
    17461 tgatcaacac ggagctaaag ttacaagcaa agaagatatg aaaaatgcat tgatagccct
    17521 agcaagagaa aataaagctt ttatcaaaac aagtaaaata tatgcatttt tttatctcag
    17581 ccatccaagt attagtgata gaatcaaggc tctttcttga ctataaaaaa tgctcttatg
    17641 gaagctaaat ctagcttaaa aggttatgaa aatgaagcag tatttatact ctgtgaatat
    17701 ctaaaaaaag ataaagcttg gttattttta aaccaagata tacaaataga tcatgaacct
    17761 tattttaagc ttataaggcg ttttaaatct ggagaacctt ttgaatatat atttgaaaaa
    17821 gtggattttt ggggcttaga atttaagata aaaaaaggca ttctaatccc tcgctacgat
    17881 agtgaaattt tactttttca aattttaaat ttatgcaaaa aaaatacttt taatgggatt
    17941 ttagaaatag gatttggaag tggaatttta agcattattt tagccaaaga acttgggtta
    18001 aaaatcacag cctgcgatat caatcccaaa gccttagaat tagctttaga gaatgccaaa
    18061 ttacacaaag tcgatcactt gattgacttt aaactttgta attttaagca aattaaagaa
    18121 aattatgatt ttattttttc aaatccaccc tatattaaaa attcatatcc tatagatatt
    18181 tgggtgcaaa aagaacccaa agaggcttta tttggaggag aaaaaggata tgaaattcta
    18241 gaagaaatca tacatttttc ccttgataaa aaagttaaat ttttagcttg cgaatttggc
    18301 tatgatcaaa aagaaatttt ggaaaaaatt ttatatcaaa ataatttcat tgttgatttt
    18361 ttcaaagatg aacaaggtta taatcgtgct tttgtagcta aatttacaaa tatgcgttat
    18421 gataaaaaat aaaaggagaa actcttgaaa gctgttaatt tatttttact tgcctccatc
    18481 atagggattg aactcatact aggaatagtt gttgcaccaa caattttttt tcctcaaaat
    18541 cttataggag aaggagtgtt gagccatttt caaagtggct taatgatgac gcaaattttt
    18601 attaagatgg gatatttgct gatttttgtt tcagtggtta attttttata tgaaatttat
    18661 tctcttataa aagatgaaat gaaatttcaa ataaaatttt caaaatttat gctgagtttg
    18721 cttattttga ttttaagctt aatatttgtt ttttatttta ctaataccat aattgaactc
    18781 caaaacttag gcgaaaacac tacaaaaact caagaattta tcagcatcca taatgcaagt
    18841 gaagtggtga ttaaaatcat cttgataatg caagtttttt tatatttctt aagctttaaa
    18901 atagcaaaaa aatgataaaa tattaaataa atccaaaaga gaaggagtag gccatgatga
    18961 tctctgatgc aactatgatg caacaaaatt attatttaaa taatgcacaa aaagctagcg
    19021 ataaagcttt agaaaatatt gcagctgttc gcgcaataag tggagttgat agtgctaatt
    19081 tagctattgc tgattcttta agatctcaat caagcactat agatcaaggt gtcgcaaatg
    19141 cttatgatgc tataggggtt ttacaaattg cagatgctag ccttaccaat atctctcaaa
    19201 gcgcagatag acttaatgaa ctttcagtaa aaatgaacaa tgctgcactt aatgattctc
    19261 aaaaaggaat gctaagaaca gaagcaacac gcatacaaga atccatcaat gattctttta
    19321 ataatgcaac ttataatgga aaaaatgtct ttcaaactat gaattttgta gtaggtagcg
    19381 gaactgaaac tacaaattta aatccattag caacagatgg attaagcata gataatcaag
    19441 atagtattac aaattttatg gatcaacttg gaagtttaag aagtgaaata ggctcaggta
    19501 tcaatgccat cacatcaaat attaatgcaa gtgttcaaaa tagcatcaac tcaaaagcag
    19561 ctgaaaataa tttactaaat aatgacatgg caaaaaatgt caatgatttt aatgccaatt
    19621 atctaaaaga aaatgctgct gcttttgttg ctgcgcaatc caacatgcag cttcaaagca
    19681 aaattgctaa tttattacaa taaaataagc cctaaatagg gcttattttt tatcaaaatg
    19741 actttagagc aaattttaga aaaaaccaaa aacgttcgtc ttgtagccgc aagcaagtat
    19801 gtcgatgcaa gtataattga aaagcttttt gatcaaggta tagtagaatt tggagaaaat
    19861 caagtccaag ctctagcaca aaaaaaagaa aatcttgatg aaaaaaaact agacataaag
    19921 tggcatttta taggaacgct acaaagcaac aaaatcaatc tcttaatcaa acaaaaacct
    19981 atattatggc actcttgcaa tggtattaaa atagctaaag ctatggacaa aagacttgat
    20041 tataaattaa atactttatt agaaatcaat agtgcaaatg aaaatagcaa aagcggttta
    20101 gatccaaatc aagccgtaga agaatattta caaatacaag aagaatgctc taatttaaat
    20161 ctttgtggcg taatgagcat aggatcacac agtcaagata aagaaaatat tataaaaagc
    20221 tttgaaacta catttaaaat ttatgaaatt cttcaaaaac atggggctaa gatttgctct
    20281 atggggatga gtaatgattt tgaaattgct ataaaatgcg gatccaactt ggtaagactc
    20341 ggaagcattt tatttaaaaa tctcaagtaa aacaatctta cttaagcata tttattagaa
    20401 atttcctcta ctatactatc agagataata aaatctgtat gataaagcaa gcaagatccc
    20461 gcactaataa cttttaaaac aagtttttta ttattttttt cattaggatt atgtgcattt
    20521 ctagcaattt catgaatttc atagattaat tctctattca atcttgtcaa atctagctct
    20581 atgatatttt tttcaaattc cttaggttct gcggtaaaat gattttcttc tttattttta
    20641 aaatcttttt ttgctccaaa tttttttata gctttaatct cgccatcttc aagactttgc
    20701 aaatctttaa ttgcttttaa aaaaaagcta ggcttctccc ctccttcagc tttaaatccc
    20761 aatacaaaac cataggcatt attttttaaa ttttcatctt tgatgatgtt ttctatttct
    20821 tctacattgc tttcaaatac agtagcatca aacgaagaat aataatccaa aatttcaatt
    20881 ctaccataac gcttattatt tttactcatc atggatttga aatcttcaat tttacctata
    20941 cttaaaattt ctccattgtt ttttaaactt tcaaaatcta aacttttaac ataatctatg
    21001 gcattaattt gttcataaaa tcgatctaaa ggatggcctg aaacataaat tcctaaaatt
    21061 tctttttcat atcctaattt ttccatcact tcaaattctt catttttggg agtaaaattt
    21121 acttgaacac ctgaagttaa ttcctcttca ccaaaaagag aacttgcagc attttttctt
    21181 acttcagcca ttttacgcga tgcttcgcta agattttcca tattatcaaa caaagctttt
    21241 ctagtaaaac caaactcatc aaaagcccct gccttaataa gactttctaa tgttctacgg
    21301 tttattttgg tgggatctat cttacctaag aaatcattaa tatccttaaa ttctccatct
    21361 tgtcttgctt caagtaaatt ttcaactgca ggaataccca cactttttat agccccaagt
    21421 ccgtatataa tagcatcctt gccatcttgc tctaaagcac taaattcacg gatcgctttg
    21481 ttaatcgatg gaggtaaaag tttaatattc atttttttca tctcatcaat ataaacagca
    21541 attttatcca cattgttttc ttcgcttgtt aaaagcgctg ccataaattc actaggataa
    21601 taagttttta aataagctgt ttgaaaagta atcaatgcat aagccgcaga gtgagattta
    21661 ttaaaaccat atcctgcaaa ttttacgata agctcccata aatcctcagc ttttgctcta
    21721 tcatatcctt gtttttctgc tccatctgca aaatcagttt taagcttttt catcttctca
    21781 ggatcttttt tacccatagc acgacgcact acatcagcac ctcctaaaga aaagccacct
    21841 ataatttgaa caatttgcat aacctgttct tgataaacaa taaccccata agtaggctct
    21901 aaaacctttt ctaaactgtc aaaaggatat tctatacttt ttaaaccatg ctttctgtcg
    21961 ataaaatcat caagcattcc tgattccata gggcctggac gataaagcgc aagaaccgca
    22021 atgatatctt caaaacgctc tggttttaag cgtgcattta agctttgcat accgcctgat
    22081 tcgatttgaa aaattcccaa agtatttcca ctttgtatgg ttttataaac tttgctatca
    22141 tttacatcta tagtttccca aataatgtct ttattgtaac gctttttaat aagcttgatc
    22201 gcattattga ttactgttaa ggttttaaga cctaaaaagt caaattttat caaatccaca
    22261 tcttctaaat gatctttaga atactgcgtt accaaatgtc tttcatcatt tttactttgt
    22321 ctaaaaagcg gagttttctt ccataaactt tcattagaaa ttacaacacc tgctgcgtgc
    22381 atacccgcat tgcgatttaa tccttctaaa gctcttgcat actcccaaac ttcaagacct
    22441 ttaggatgac gatcgataaa ttctttgatt ttaggttctt tttcataagc agcatcaaga
    22501 gtgattttaa gctcttcagg cacaagttta gcaagctcat cagcatcttg aatactcata
    22561 tcacaaactc tagccacatc acgaatcacc cctttagcca aaagtttacc aaaggtaatc
    22621 acctgtgcaa ccttatccgc tccatattta tcaatcacat aatcaatcac ttcagcacgt
    22681 ctgtcttgac aaaaatccac atcaatatca ggcatgctca cacgctcagg atttaaaaaa
    22741 cgctcaaaaa gtagactata aggaatagga tctaaatccg taatccttaa acaataagaa
    22801 accaaacttc ctgcagctga tcctcttcca gggcctactg gaataccttt atctttagcc
    22861 actttaataa aatcatgaac aataagcata taacctgaaa atttcatatt tttaatgatg
    22921 ttaatttcta cttcaagtct ttgtttgtat tcttcatgct tgctttcatc gataaatttt
    22981 aatctctctt caagtccctt tttacaaagt tcttcaaaaa ctatgtcatc attatcaaag
    23041 ctaaattctt ttgtttcttc aggtaagata atattatgat ctttagcata ttctcctgta
    23101 aatttaaaat tcggtggagt gggattgcca agattaagct ctaaattaca tttttgcgcg
    23161 atttcttgtg tattttctat agcttctgga atatctgcaa aaagctcact catttgctca
    23221 gggcttttaa cataaaattc atgcacacta tgacgcattc tatcaggatc gttaagtttt
    23281 tttcccatgg ctatacacat aaaaacctca tgggcagccg ctctttcttt aaaagtataa
    23341 tgcgtatcat ttgtagcaat gatttttata tttaattctt tagaaagtct gataatatca
    23401 tcatctatca ttctttgatc gcctatacca tgacgcatga tttcaaaata aaaatcatct
    23461 ttaaaaactt ttttatacca taatgccgct tcttttgctg cttcatagcc ttttgcacca
    23521 aaacgcacat ttctttcact ataagtattt aagtgccaat ttacttcacc ttgcaagcaa
    23581 gcagaagagc aaataagacc ttcgctatga tcttccaaaa gctttttatt gatacgcgga
    23641 taataataca aacctttaat ataactttga gaacttaaat acattaaatt ttgatatccg
    23701 atctcatttt ttgcatacaa acaaaggtga aaacgctgac gagaactttt atcatctaat
    23761 tcatcgtgat tatgtaaata cgcttccata ccaatgatag gttttaaacc ttgtgctttc
    23821 attgtttgat agaaatcaat tgccccaaac atatttccat gatctgtcat agccacactt
    23881 gtagcaccct gctcttttaa agtcaaagct aattctttaa gcttattggc tccatcaagc
    23941 aaagaatatt ctgtatgtaa atgcaagtgt gtaaattgac tcattttctt cctttagttt
    24001 tttaaggctt attataattt tgataaaaat tataaatttt tctcgctgaa tttgaaagaa
    24061 attgacccta aatttcaact taaattttac aaaaaggcaa aaattcagcc aaaataaact
    24121 ataataaaat ctaagatttt aatcttaata aaaagaactt ctcaaaggat gaaatgatga
    24181 aagtaaaaat tgcttattgc aatctttgaa attatcgccc acaagctgca agggttgcag
    24241 aagaactaca aagcgatttc aaagatgttg aagtagaatt tgaaattggc ggcagaggtg
    24301 attttatcgt tgaagtagac ggaaaagtta tcttctctaa agcacaactt attaattgcg
    24361 aaagtgaaag atttccatat caaaatgaaa ttaatcaatt aataaaaaat agagtgtaat
    24421 caaacactct atcataacat tttctcatat tccttaccaa tatatatgtt ttgctcatac
    24481 tcgataatag gacgcttaat acaacttgga ttttccaata caattttttc aagttctttt
    24541 tcatttaaat ttttaacttt ttctttgttt aagccaagtt ttttagaagt taatccagca
    24601 gtattgataa gttcttcaaa agatttttgt tttaaccatg tgtataaaat atcttgatta
    24661 atctttttaa tatccataaa atcaaacaca ataccttttt gtgttaaagc atccatagct
    24721 ttctttacag aattgcaatt tttaatacca taaagtttca ttttctagcc ttttttacca
    24781 aatctgcgat taaaaaagca agttctaatg cttgatccgc attaagtctt ggatcgcatt
    24841 gagtctcata acgatcttcc aagctttgag cagtaacatt gcttgcacca cctgtgcatt
    24901 ctgttacatc tttcccagtc atttcaagat gcactccacc tggataaacc ccttcgctta
    24961 ttgcaatctc aaaaaaagat ctcacttctt gcataatttt atcaaactca cgtgttttaa
    25021 aattgcctgc ttttaccgta tttccatgca taggatctat gctatatact aaatttaaac
    25081 cttcactttt aagtttagag aaaatttttg gcaaattatt gataatttta tctgcaccca
    25141 tgcggataat aatatttaat cttccttctt cattatttgg atttaaaaca tttgctaaag
    25201 ctatgatatc atcagcactt gcactaggtc ctattttaac ccctaaagga ttttttactc
    25261 cacttaaaaa atgcacatga gcttcatcaa gcgcccttgt tctttcacct atccaaagca
    25321 tgtgagctga acaatcgtaa atttctccac ttaaactatc cactctagtt aaagcttctt
    25381 cataaggcaa aagtaaagct tcatgtgaag tataaacact aacttctctt agacttggag
    25441 tattacttgt attaattcca caagcttcca taaaagctaa agcttgtgaa attttttcac
    25501 taatatcagt atattgctta tggagttcac tcttttttaa aaagcccaaa ttccaacgat
    25561 gtacttcatg taaatctgct aaaccaccct tagcaaatcc acgcaacaaa tttagcgtta
    25621 ttgcgctttg ataataagct tcaagcattc tatgtggatc aggaatgcgt gcttgttcac
    25681 taaattcaaa accattaata atatcaccac gataactagg aagacttata ccatctaact
    25741 cttcaaaatc actacttctt ggcttggcaa actgccctgc aatacgacca atttttataa
    25801 caggacatcc accagcaaat gtaagtacta tagccatttg aagtaaaatt ttaaacatat
    25861 cacggatatt tacagcgcca aaattttcaa aactttcagc gcaatctcca ccttgaagta
    25921 aaaaagcttc ttttttacaa actcttgcta aagacttttg aagatttctc acttctccag
    25981 caaaaaccaa aggaggaagt ttctcaagtc ttgctaaaac tctattcatt tcctcttgat
    26041 ctggatagat aggttgctgt tttataggat agtttttcca agaattctta gcccacatgg
    26101 ttttttcttt cgttttattt atcagcttcc tctataagtt gaataaccaa aaggagaaag
    26161 ggttattgga acatgataat gtttctgatc tttagaaagc tcaaaactta cctctacaaa
    26221 aggataaaaa gtatttattt tgtgtgatgt gtaatagtct tttgtaaaaa atttaagctt
    26281 ataaattcca aaagccctat tttcagcttt ttcatatggt aataaatctc ctattctacc
    26341 attttcttcg gtaaattctt cacttacttt tttccactgt tgatttgctt ccaacttata
    26401 aagctcaact tttactttag gagcaggttg tccagaagta atatccaaga catgagtact
    26461 taattgatat tcagtagcac tcaaaaacat tggcacgctt gctagtatta ataaagtttt
    26521 tttaatagaa aacattttct ctccttg
//
LOCUS       DAQSLY010000009        25870 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.009, whole genome shotgun sequence.
ACCESSION   DAQSLY010000009 DAQSLY010000000
VERSION     DAQSLY010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25870
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.009"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            5..535
                     /locus_tag="R2H98_000292"
     CDS             5..535
                     /locus_tag="R2H98_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEE9023214.1"
                     /translation="MAISCLFVACSNDKEKQQNDVNLSTEASINQSDDMNFKLNLIDG
                     GSISVKKENVVLNFNDEGKAILFVFFTTWCTPCIAEIPHLNKLQEKYNNDFNIVGVLL
                     EDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKHSKLINQYLG
                     LIPEEMLEIDIQKAIL"
     gene            535..1401
                     /gene="ftsY"
                     /locus_tag="R2H98_000293"
     CDS             535..1401
                     /gene="ftsY"
                     /locus_tag="R2H98_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEE9023215.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1401..2741
                     /gene="radA"
                     /locus_tag="R2H98_000294"
     CDS             1401..2741
                     /gene="radA"
                     /locus_tag="R2H98_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEE9023216.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            2810..3490
                     /locus_tag="R2H98_000295"
     CDS             2810..3490
                     /locus_tag="R2H98_000295"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEE9023217.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3487..3678
                     /locus_tag="R2H98_000296"
     CDS             3487..3678
                     /locus_tag="R2H98_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023218.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENYKLKNENKLR"
     gene            complement(3700..4548)
                     /gene="metF"
                     /locus_tag="R2H98_000297"
     CDS             complement(3700..4548)
                     /gene="metF"
                     /locus_tag="R2H98_000297"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEE9023219.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEIASLIQEEYQIPSIVHLPCIHSSKEKIIQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4558..6822)
                     /gene="metE"
                     /locus_tag="R2H98_000298"
     CDS             complement(4558..6822)
                     /gene="metE"
                     /locus_tag="R2H98_000298"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEE9023220.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(6834..7604)
                     /locus_tag="R2H98_000299"
     CDS             complement(6834..7604)
                     /locus_tag="R2H98_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEE9023221.1"
                     /translation="MTLFTKAFCVATLFTGFAWADEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKYKEFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7615..8607)
                     /locus_tag="R2H98_000300"
     CDS             complement(7615..8607)
                     /locus_tag="R2H98_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEE9023222.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYIEQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPSNA
                     FDKLYGKNSYEHCKIIHYPKSSKNTTQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(8920..9414)
                     /gene="luxS"
                     /locus_tag="R2H98_000301"
     CDS             complement(8920..9414)
                     /gene="luxS"
                     /locus_tag="R2H98_000301"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEE9023223.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9529..10947
                     /gene="gatB"
                     /locus_tag="R2H98_000302"
     CDS             9529..10947
                     /gene="gatB"
                     /locus_tag="R2H98_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEE9023224.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSIFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFKSLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKEKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            10944..11840
                     /locus_tag="R2H98_000303"
     CDS             10944..11840
                     /locus_tag="R2H98_000303"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEE9023225.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            11850..13028
                     /locus_tag="R2H98_000304"
     CDS             11850..13028
                     /locus_tag="R2H98_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEE9023226.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13036..14562)
                     /locus_tag="R2H98_000305"
     CDS             complement(13036..14562)
                     /locus_tag="R2H98_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEE9023227.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKEQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14704..15510
                     /locus_tag="R2H98_000306"
     CDS             14704..15510
                     /locus_tag="R2H98_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEE9023228.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKKLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSTRETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15507..16883)
                     /locus_tag="R2H98_000307"
     CDS             complement(15507..16883)
                     /locus_tag="R2H98_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEE9023229.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            17152..17646
                     /gene="cetC"
                     /locus_tag="R2H98_000308"
     CDS             17152..17646
                     /gene="cetC"
                     /locus_tag="R2H98_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEE9023230.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKSKDGNFYWVFANVSASFDANGDII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            17766..19145
                     /gene="cetA"
                     /locus_tag="R2H98_000309"
     CDS             17766..19145
                     /gene="cetA"
                     /locus_tag="R2H98_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEE9023231.1"
                     /translation="MVKNGLLSTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            19163..19660
                     /gene="cetB"
                     /locus_tag="R2H98_000310"
     CDS             19163..19660
                     /gene="cetB"
                     /locus_tag="R2H98_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEE9023232.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            19748..21607
                     /gene="mnmG"
                     /locus_tag="R2H98_000311"
     CDS             19748..21607
                     /gene="mnmG"
                     /locus_tag="R2H98_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEE9023233.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            21608..22894
                     /locus_tag="R2H98_000312"
     CDS             21608..22894
                     /locus_tag="R2H98_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEE9023234.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     AFFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            22985..23488
                     /gene="petA"
                     /locus_tag="R2H98_000313"
     CDS             22985..23488
                     /gene="petA"
                     /locus_tag="R2H98_000313"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEE9023235.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            23490..24740
                     /locus_tag="R2H98_000314"
     CDS             23490..24740
                     /locus_tag="R2H98_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEE9023236.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            24737..25861
                     /locus_tag="R2H98_000315"
     CDS             24737..25861
                     /locus_tag="R2H98_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEE9023237.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENICFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
BASE COUNT         8641 a         3556 c         4535 g         9138 t
ORIGIN      
        1 actagtggca atatcttgtt tgtttgttgc ttgtagcaat gataaagaaa aacagcaaaa
       61 tgatgtaaat ttaagcaccg aggcaagtat aaatcaaagt gatgatatga attttaaact
      121 taatttgatt gatggaggat caatttcagt taaaaaagaa aatgtcgttt taaatttcaa
      181 cgatgaaggt aaggcaattt tgtttgtatt ttttaccact tggtgtaccc cttgcattgc
      241 tgaaatccct catcttaata aattacaaga aaagtataat aatgatttta atatagttgg
      301 ggttttatta gaagataaat ctaacgatga gattcaaaaa tttatagaac agcataaaat
      361 atcttataaa gtcgctaatg gtgaaaataa ctatctttta gctaaagctt taggtggggt
      421 aaatggaatt cctaccatgt ttctttacaa taagcattct aaattgatta atcagtattt
      481 agggcttatt cctgaagaaa tgctagaaat cgatatacaa aaggctatac tttaatgttt
      541 aattttttta aaaaaggact tgcaaaaact cttgaaaata ttgttgggat taaaggagag
      601 aataaaaaga taaccaaaga tttgcttgaa gaaattttgc ttgaagcaga tgtaagttat
      661 gaaatagttg aagagataat ttattattta ccacctcaaa atgaagtaaa aaaagaagat
      721 ttaaagcgtg ttatgggttc ttattttctt tatgaaaaaa aagaaaccaa tcaagaaaaa
      781 ccttttgtag agcttatttt aggagtaaat ggagcaggaa aaacaacaag tattgccaaa
      841 cttgcttatt tatataaaaa ccaaaatcaa aaagtgattt taggagcgtg tgatactttt
      901 agagcaggtg cgattgaaca attaaaactt tgggcgcaaa aagtggatgt agatatagtt
      961 ttaactgcac aagggcatga tccttcagcg gttgcttttg ataccatttc taaagcaaaa
     1021 gcaaaggatt ttgatagagt tattatcgat acagcagggc gtttgcaaaa tcaaaaaaat
     1081 ttagcccatg agcttgaaaa aattgtgaga atttcaaaca aagctttaga aggtgcaccc
     1141 catagaaaaa ttttagtttt agatggaaca cagggaaatg ctggaatttt acaagctaaa
     1201 gcttttaatg agcttgtaaa acttgatggt gtgattatca caaagcttga tgggacagct
     1261 aaagggggtg cactttttag tatagcaaga gagcttgagc ttcctatttt ttatgtaggc
     1321 gtgggtgagc aaatgacgga tttgcaagaa tttaatgcaa gtgcttattt agatacttta
     1381 ttagatccta tttttgaata atggcaaaaa ataaagcact ttttgaatgt caagcttgtg
     1441 gaaatcaaca aagcaaatgg cttggaaaat gtcctgattg tggagcttgg gatagttttg
     1501 tagaattaaa agctgagcaa attaaagttt taaaagagct tgcgcaagtt agtatgaaaa
     1561 caagtgaagc tgtttgtatt gaagatgtgg aattagaaca ttttacaaga tacagcacag
     1621 atgataatga gcttgatttg gttttaggcg gagggcttgt tgaaggttct ttagtgctta
     1681 taggcggaag tccaggtgtg ggaaaatcta cgcttttgtt aaaaattgct tcaaatttag
     1741 ccaaacaggg taaaaaagtg ctttatgtca gtggcgaaga aagtaaagct cagattaaat
     1801 taagagctga tcgccttgag gctaatactc cgaatttatt tttacttact gaactttgcc
     1861 ttgaaaatat tttagaagaa ttacataaaa aggattatag tattcttatc attgattcta
     1921 tacaaactct atattcaaat aaagtcactt cagcagcagg aagcatcact caggtgcgtg
     1981 agattacttt tgaacttatg cgtgttagca aggcttataa tatcagtact tttatcatag
     2041 ggcatattac taaagaaggt gctatagcag ggcctagggt tcttgagcat atggtagatg
     2101 tggtgcttta ttttgaagga gatgccacta aagaaatcag acttttaaga ggctttaaaa
     2161 atcgttttgg tggaacgaat gaagtaggta tttttgagat gactgctaag ggtttgatta
     2221 gcgcaaaaga tttagcaaat cgttttttta ctcgtggaaa ggctatttca ggaagtgctt
     2281 taggtgttgt gatggaagga tctcgtgcct tggttttaga agttcaagct ttagtgtgtg
     2341 aaagttctta tccaaaacgc agcgctacag gatatgaaaa aaatcgctta gatatgcttt
     2401 tggctttgct tgaaagaaaa cttgaaattc ctttagggca ttatgatgta tttgtaaata
     2461 ttagcggcgg agtaaaagta agtgaaactg ctgcggattt ggctgtggtt gcagctatta
     2521 tttcaagttt taaaaatcgc cctttgagca aagatagtat ttttataggg gagcttagtt
     2581 taaatggaga aattagagag gtttttagcc ttgatacgcg tttaaaagaa gctaaaatgc
     2641 aaaaatttaa aaatgccatt gttccttcta agcctttgga agatataggg cttaagtgtt
     2701 ttgttgctaa agaactttca caagttttag aatggatgta aattttcatt aaaatataag
     2761 taagattttg ctaaaattcc gagtttagaa taaaattttt gaggaaacca tgaaagattt
     2821 atttttattt agctctttgc ttgatgcaag tcatactttt tcttattttt ttcacatagg
     2881 tttggtagct ttaattgctg ttatagtggc tatgatggct actcgttcta tgcaacttgt
     2941 tccacgcggt atgcaaaatt taggcgaggc ttttttagag ggagttttat ctatgggtag
     3001 agataccatg ggaagtgaaa aaggtgcaag aaaatatctt cctttggttg caactttggg
     3061 gattatagtg ttttttagta atattatagg cataatacct ggttttcact ctccaactgc
     3121 aagtttaaat ttgactttgt ccttggctat tatagttttt gtatattatc attttgaggg
     3181 tattagggcg caaggttttg taaagtattt tgctcatttc atgggaccta ttaaactttt
     3241 agctcctttg atgtttccta tagagatagt ctctcatctt tctcgtgtgg tttctttgtc
     3301 cttccgtttg tttggaaata ttaaaggtga cgatttattt ttgatggtaa ttttagcttt
     3361 agttccttat atagctccac ttcctgctta tgtgctttta acttttatgg catttttaca
     3421 agcttttatt tttatgattt taacttatgt atatttagcg ggtgcaactg ttgttgagga
     3481 aggtcattga tctatatttt agaatttttc aaaggtgcat ctttagcttt aatgcttttt
     3541 ggtgcacttt tcttcttttt taaatataat tcttttttct atctttgctt gggtattata
     3601 ccaggtttgc ttttatcttt aatttttgtt ttacttatag aaaactataa gctaaaaaat
     3661 gaaaataagt taagataaaa gcaaaaaata gtttattttc taagcatgaa gctcttcttt
     3721 aagcaaatgc tttacagctt cataaatttt aatagccgct ttggatttat tcatagtata
     3781 aagatgaatt ccatctacac cacttgtgat taaatcgaca atttgatcgc aagcatacgc
     3841 gatacctgca tcttctaaag ccaaagtatt attttcatat ttttctaaaa ttttaacaaa
     3901 tttaggaggg attttagctc cgcaaagttg agaaattttt aaaacctgtc ttttgttagt
     3961 aataggcata atacctgcgt aaataggtat gtcaatacct gctaaagcac aattttgttt
     4021 aaaagtataa aaatcttcat tatcgtaaaa aagttgagta atgagcttat ctgttcctgc
     4081 atttacctta gttttaagat ggtgtatatc ctcgatgaaa tttttagatt cattatgttt
     4141 ttcgggatag catgcggcat aaatttcaaa gtattcttgt ttttttataa aagaaattaa
     4201 atcactagca taagaaaaat ctttgctttt ttctaaattc tcacatatat cgcctcttag
     4261 ggcaagaatt tgattaagat ttttttcttt gcatttttga agtatctgaa tgattttttc
     4321 tttactagaa tggatgcaag gtaaatgtac tatgctagga atttgatatt cttcctggat
     4381 taagcttgca atttctaaag tgttttgtga gttaatagag cctccagctc caaaggttac
     4441 gctgataaaa ttagggctta attgccctaa atcatctaag atagcatgaa gatttttgat
     4501 attttcatcc tttcttggtg gaaaaacttc aaaagaaaaa ctacacatga aaactcctta
     4561 taattgttct cgtatttttt gcgtagccgt aactaaattt ttaagagagg ctataacttc
     4621 ttcataggct cttgttttaa gtccgcagtc tggattgatc caaatttgct ccttgggtaa
     4681 tttgtttaaa attttttcta tagttaaact taattcttct acgcttggaa ctctagggct
     4741 atgtatatca taaactcctg gtcccacctc agttttaaaa cgaatagctt ttagggtatc
     4801 taaaagactt aagtttgatc ttgaagcttc aaaagaaatc acatcagcat ccatagcgtc
     4861 aatttctttt aagatatcgc taaattcact ataacacata tgagtgtgaa tttgagtttt
     4921 agcttttacc ccactatgca caagattaaa agcaggaata gcccaatcta aatactcact
     4981 atgccaatca cttttcctta aaggcagttt ttcacgcaaa gccgcttcat caatttgtat
     5041 gatttttata cctgcatttt caagatctaa tacttcatct cttatagcta aggcaatttg
     5101 ctcagtgctt tcttttagac taatgtcttc tcttggaaag gaccaattaa gtatggttac
     5161 aggtccagtt agcatacctt ttacgatttt ttgacttaaa ctttgtgcaa atttagacca
     5221 agctaaggtg ataggcttta tgcgcgatac atcaccccaa atcacaggag gtttaacgca
     5281 ccttgtgcca tagctttgca cccaaccatt ttgagtaaat aaaaagccct ttagattctc
     5341 tccaaaatac tccaccatat catttctttc aaattctcca tgcactaaaa catcaagtcc
     5401 tatttcttct tgaatttgta tgcattcttt gattttttgt tggttaaatt cagtgtagtt
     5461 ttgagctgaa attttttctt gcttaaaggc aaggcgatta gatcttacat cagcactttg
     5521 aggaaacgaa cctatggttg tggttggtaa aagagggagt tttaaaaatt ctttttggat
     5581 taaggcgcgt tctttaaaac taggcgttct ggtaaaatct tcttttttta aagccttaag
     5641 ccttgctttg actttttcat ctaaacgctc tgggatattt ttaaaaagct cttgattggc
     5701 tctaaagagc ggattttctt cgctagaatt tagaatttct tttaaatctt taagttcttg
     5761 aagtttttct ttggcaaagg aaaaaagttt aagatagttt gaatctaatt tgctttcaaa
     5821 ttcagtgcta taaggcacat gtaaaagtga gcaagaagtg tttaagatga tattttgtgt
     5881 atatttttga agctctttaa taagctttag gcttttagca taatcattag tatagatatt
     5941 tttgccatta ataagacctg caaaaaggat tttatcttta gcaaagccgt atttttgaac
     6001 taaggctaag ctttgtttac cttcgataaa atcaagaccc aaagcatcaa atttgctttc
     6061 taaaagttta ggataaatat ctcttaagtc tccaaaatag ctttgaagta aaattttaag
     6121 atcttttttg tgatttaaaa gttcttggta aaattcttca aacaaagcga tatcttcctt
     6181 gcttaaatca taaaccaaat aaggctcatc aagttcaagc catgtcactt taagttcatt
     6241 tagtttatca aaaagctcta tgtaagcgtt taaaagcttt tctttggcga gtttttgagt
     6301 tttttcatct ttaaaggcaa tgagcttaaa aagtgtgaaa atgcctatta aaacaggctt
     6361 gctttctatg ccaagctctt tagcttcgag atattcttta aaaattttat cccctgttaa
     6421 agctataata tcagcattat cgcactcagg caccaaataa tgataatttg tattgaacca
     6481 ttttttcatt gctaaggctg taacatctcc attttctcct tgataacctc gactttgagc
     6541 aaagtattca tctaaagcat ctaaatttaa atttttatac tttgtatgaa caatgttaaa
     6601 aagcacagct gcatctaaga cattatcata aagtgaaaaa tcattactag ggataaaatc
     6661 aatgccagct ttttgaattt cttgccagtg tctaatcctt aaatccttag cactctttaa
     6721 aagctcctct ttagaacttt ggtttttaaa gtatttttca atagcaaatt ttaattctct
     6781 atttgcacct attcttgggt aagaaatgat tgaatttttc atatttgttc tccttaaaat
     6841 gtagggatta aagcaccctg atatttttct tctataaatt ttttaacttc atcgctttgc
     6901 aaggccttta ctagggcttt gattttagga aggttttcat taccttcttt aacggcgatg
     6961 atattgccat attcactata tttactttct gtataaagcc catcttttac agggtttaaa
     7021 cctgctaaaa tagcaaaatt gctattaata agagaataat ctacatcatt taaactcctt
     7081 gtaagttgag cgtcttttaa ctctacaaat ttaagcttct taggattttt agtgatatct
     7141 aaaggagtga tgagctcatt atccttaact tctataagtc ctttgcttgc tacaatgcgt
     7201 aaagcacggc tttcatttgt aggattattg ggtatagaaa tgctttgtcc ttcctctggg
     7261 ttaaattctt tatatttttt tgaatacact gccataggtt ctatatggat actggcaact
     7321 tttacaagat gggtgccttg cctttgattg aattctttta aataaggttc atgctgaaaa
     7381 taattagcat ctaactcacc attttcaacc attacattag ggattacccc atcattaaat
     7441 tcataaattt ttaaatcata accttgtttt tgaagtgctg attttataaa tcttaaaata
     7501 tctgcatgag gtgttataga agagccaact ttaagttctt catctgccca tgcaaaaccg
     7561 gtaaaaagag tagcgacgca aaaagcttta gtaaataaag tcattttttc tcctttatgc
     7621 aaaactaaat ttttctatca agtcactatg ataaatactt gctacatcag gatgagagcg
     7681 tatcattctt ttaaaataat tacttgcaac atttcttaaa agtggatttt taggatcagt
     7741 atccacacct ttgctttctt tggcaagctc tggatttaac ttaaaaatag gtatatcctt
     7801 atcaagttgc actccaagaa aataagctat gctaaagcgt tcttttgggc ttaaattcac
     7861 gcggtgaata gtagctttta aatagccatt ggtagctagt tctaaaaatt ctcctatatt
     7921 aactacaacg ctattttcaa gtgggggtat actaagccat ttaccatcta taaaagcttc
     7981 aagtccgctt tgtttttctt gaaaaacaaa agtgataagc ccgccatctt tatgtgaacc
     8041 cacgccttga gtagtgtttt ttgaactttt aggataatgt atgattttac aatgttcata
     8101 agaatttttt ccataaagtt tatcaaaagc attgctaggt agatcaagag cttgagcgaa
     8161 ggcttttaaa agctttaaac aagctttttt ggtttgtttg tgccaagtta agaaagtttt
     8221 tttaagttct ggaatttcac taggccaaag attaggacct tctagtcttt gccataaggg
     8281 tgagtttaaa ttccagttta aagcatctct ttctgtgcct atatccagtt gttctatata
     8341 atccttagat cctgctgtgt attcaaaacc ttcgctagta taacctctaa attgaggaga
     8401 atgtaccata gaaataagct ctttcgaact tctagaaaga ttaaaaaatt ctttgccaag
     8461 tttgaataat ttctcgttta aatttttatc tatactggta ttgataagat aaaaaaaacc
     8521 tattttagaa gcaatttctc ttaaattttt aagaaaagtg cttttatctt tttcataagc
     8581 ttgtaaatca agtataggta agttcatttt tgctccttaa attaaaatta aggataagaa
     8641 gatattttga attaaaattt tattagagaa atttttgtaa gttaagattt taaatgagta
     8701 ttttgaaaaa ataaactttt ttgactttct tacacattat atctccttat ccactttttg
     8761 gacctttgga aacataatgt taagccaaag gacgcactag atactacaca tctcgcacat
     8821 cagtttcatt ttttctcctt attaaaataa taaaatttca aaatcatata taaaaatata
     8881 ttaattaaag cttaattgtt taaaaaataa agattctttt taagcattct cgagttttaa
     8941 ttctttgtta ttcattatgc taatacctag atttaaaacc ttttgggcaa tttgtttggc
     9001 ttcatctaaa gaatgcattg cgcaagttcc gcattgatag atattaagtt caggaatttt
     9061 gctttgatcg cttacgctta aaacatcttt catagctgct ttccaagctt tagcaacact
     9121 tttttcatct ggtgttccaa ttaaactcat ataaaaaccc gtgcgacaac ccataggtga
     9181 aatatcaata atttcaactg aatttgaatt taaatgatct ctcataaatc ctgcaaataa
     9241 atgttctaag gtatgagtac ctttttcgct cataatgtct ttatttggta tgcaaaaacg
     9301 caaatcaaac acgctaatat catcgccctt aggtgttttc ataactttag ctaaacgcac
     9361 agcaggagct ggcattttag tatggtcaac tttaaagctg tctaataatg gcattttaac
     9421 tccttaaata taaattgtct aagaattata gcatttaaag ttaatattta aagcctttct
     9481 aaaagaaaaa aagataaaat aaaacattta aaaattcaag gaaattttat gtttgaagta
     9541 gttataggtc ttgaagttca tactcagtta aatacaaaaa caaaaatctt ttgctcatgt
     9601 gcaacttctt ttggagaagc tccaaatacc aatgtttgtc ccacttgttt ggccttacca
     9661 ggagctttgc ctgttttaaa tgaagaggct gtaaaaaaag ctatagcttt tggaaaagct
     9721 gtcaatgcaa caattaataa aaaaagtatt tttaatcgta agaattattt ttatccagat
     9781 ttacctaaag cctatcaaat ttcacaattt gatatcccta tagtagaaaa gggtgagctt
     9841 tttatcaatg taaagggtga aaataaacgc ataggtatta caagagcaca cttagaagaa
     9901 gatgcaggta aaaatatcca cgaaaataat ttttctaaag tggacttaaa tcgtgcagga
     9961 actcctttgc ttgagattgt cagcgaacct gagcttagaa gtagcgatga ggcagtagct
    10021 tatcttaaaa aacttcattc tattatacgc tttttagaca tttcagatgc aaatatgcaa
    10081 gaaggaagtt ttagatgcga tgcaaatgtt agtataagac ctaagggcga tacaaaactt
    10141 tatactagag tagagattaa aaatcttaat tcttttcgtt ttatccaaaa agctatagaa
    10201 tatgaggtaa aaagacaaag tgaggcttgg gaagatggaa cttacgaaca agaagtagtt
    10261 caagaaacta gactttttga tacgacaaat ttagttacaa gaagtatgcg tggcaaagaa
    10321 gaagcggcag aatatcgcta ttttcctgat cctgatttat tgcctgtttt attaaaagat
    10381 gagtttttgg atattaaaat ccctgaactt cctgatgaga agaaagcacg ctttatagac
    10441 gagcttggta taaaagaaag tgatgctgag gttttaatca gttctttaga aatgagtcgt
    10501 ttttttaaaa gtcttatttc tcaaaattta aatcctaaac tttgtgtaaa ttggttaaat
    10561 actgaactta tgggactttt aaaaggagaa ttgactatag aaaattctcc cgtagatgct
    10621 caaaagcttg gagttttaat taaacgcata gaagatggca ctatcagtgc aaaagcggct
    10681 aaagatgttt tggcttttgt atttgaaaat actagcgtgg aaattgatga agctatagaa
    10741 aagctaggac ttaaacaagt aagtgatgac tcagccatag aagcggtgat tgaacaaatt
    10801 ttaaatgcaa atgccgataa ggttgcagag tataaaagtg gtaaagagaa gctttttgga
    10861 ttctttgtag gtcaaaccat gaaagaaggc aaaggagctt ttaatcctgc aaaagtaaat
    10921 gaaattttaa aaacaaagct tggttgatgc gtatagcggt tattggtgcg ggaaaatggg
    10981 gcagtgcttt acatctagcc ttaaaagaaa atcacaattg ttttatcagt tctttgcatc
    11041 agcgtgattt agaagatttt gttagcataa aagaagcttt agaatgtgaa tatcttgttt
    11101 ttgctttaag ttctcaaggg atgcgtgctt ggcttaaaga aaatttcatc aacaagggac
    11161 aaaaaatttt aattgcttca aaaggcatag aagatcaaag ttgtcaattt ttagatgaaa
    11221 tttttttaga ttttgtacca aaagaaaatt tttgtgtttt aagcggtcct tcttttgctg
    11281 ctgaagtgat gcaaaaactt cctactgctt tgatgattag cgggataaat caagagcttt
    11341 gtaaaaaatt tgcaagtttt ttccctgatt ttattaaaac ttatattgat aatgatgttc
    11401 gtggtgctga aatttgtggt gcttataaga atgttttagc aattgcaagt gggattagtg
    11461 atgggttaaa acttggtaat aatgcaagag cagcactgat ttcaagagga cttatagaaa
    11521 tgcatcgttt tggtaaattt tttggcacta aagaagaaac ttttttagga ttgagtgggg
    11581 caggggattt gtttttaact gcaacgagtg ttttatcaag aaattataga gtgggtttaa
    11641 aactggcgca aaatcaaaaa ttagatagta ttttagccga acttaatgaa gtagcagaag
    11701 gtgtaaaaac tgcttatgct atagaaaaac tagcaaaaat gaaaggaatt tatacaccta
    11761 ttgtaaatga agtagtggca atttttaagg gtaaaagcgt gcaagaagca acgcagaatt
    11821 tattaaagca aaatgattaa ggaaaaatca tgataattaa aaatgcaaaa atttatggag
    11881 attctttaca agatatagag attaaagaag gaaaaattac caatattggt tctaatttac
    11941 aaggcgaaga aattttagat gctaaaggta tgactttact tccatctttt gtggatttgt
    12001 gtgtgagttt aaaaaacgat aaattttctt tagctaattt agagctttta gaaaatgagt
    12061 gtctaaaagg aggaatttct agtatagttt tgcgtgattg catggatttt gatgaagaaa
    12121 gttttgcttt atttttacaa aatttagctc aaagaaagat gcaaattttt tcaagtgtgc
    12181 gggttaagga tacaaacggc aagcttaaaa atttagccac tcttttaaat aaaggtgctt
    12241 gtgctctaga acttgacagc tctttagatg caaatacttt aaaagtaagt tcacaatatg
    12301 cttttatgaa agactctcca atttttgtgc gttgttatga taaggatttt gatgataatg
    12361 gagtgatgaa tgattgtgaa atgagttttg agctagggct tataggcatg agtaaaatcg
    12421 ctgaaactag ccagatagct aaaatgaaag aattggctaa attttataaa aataaagtta
    12481 tttttgatct tttaagtttg aaagattctt tagtattatt agatgaaaag gatttaaaac
    12541 ttgtaagcat tcatcatctt atcaaagatg atagtgcttg tgaagatttt aatacggctg
    12601 cgaaacttat gccaccttta agaagcaaag aagatgtttt ggctttaaga gaggctttaa
    12661 aagaaggaaa gattagcttt ttaacttccc tgcatagtgc aaaatcaatt tctttaaaag
    12721 atttagcttt tgatgaagcg gcttttggaa ttcatagcgt atgcgaattt ataagtcttt
    12781 gttatacttt tttaatcaaa gaaggatttt taaattggca agagctttgt cgatttacaa
    12841 gtaaaaatcc tagtgaattt ttaggtttaa atagtggagt tatagaagtt ggcaaagaag
    12901 ctaatctagt tctttttgat gagaatgaag aaatttttgc tccaaaaagt tctctttatt
    12961 ctgaggataa actttttgga aagattaaga tgcatataat taaaggaaaa aatattttag
    13021 aaaaataagc tttacttaaa ttcctaaaga tagtttaaat cctaaaaata caagtgctgc
    13081 cataatacca gcggctggta aagtgataat ccaagccaat cctataggct tcatcataat
    13141 ccaatttgcg tttttattat acactcctat acccaagata gcacctatga gtatatgggt
    13201 ggagctaaca ggaattccaa attgtgtagc taagagtata actatgcttg caccaagttc
    13261 tgcagaaaat ccagtagtag gccgtatggt tgcaagtttt gaacccactg tagtaatcac
    13321 ttctttacct aaaaaccaaa gtcctacaac tagagcaact ccaaacatag ctaaagcagc
    13381 aaaaggtaca ggagaagtcg cgttaattgt gccgtttttt aagacatcta aaatcgctgc
    13441 aaaaggacct atagcattgg ctatatcatt ggctccgtgt gaaaatgcaa aactagaggc
    13501 tgtaaatatt tgaaaccatg agaaaattct atcagtagtt ttattaagtt ctgttttttt
    13561 aacgattttg actatagcaa atgttacaac ataacttata gttcctataa ttccgataat
    13621 ccaaaagttt tgtaaaatat ccaaagtgct aacattattt aaacctttaa ataaaaacat
    13681 tgccgaaatg atagcagcag caatacaagc aatgattggc atatgagttt ttaaaataga
    13741 gtaaatatct atatcttttt cttgttcttt aaattccttc attttatttc tatagaaatt
    13801 attttcttgt tcttcttcat ccaaagctat agcggaaagt tctttgattt gttcttcttg
    13861 ggattttgtt tttaaattta aaaaatattc ttctttgaat ttttttcttt cttttttgat
    13921 atttttcaaa tcatcattta gtttttctga tggttttaaa attttcttat caatatatga
    13981 ataaataata taagctacaa taccccctaa aagaggcgaa gctacccaag aaatagctat
    14041 tcttaaaatt tcactccatt taaccataga gagtgtttgg attccatcaa attttaaaag
    14101 ccccatcata atactagcac ctacaatccc accaactata ctgtgtgtgg ttgatacagg
    14161 taagcctttc ttggttgcaa taaaaatcca aaccccagag cttaaaagtg cagcaagcat
    14221 aatgataaca aaaagcatag gatctaaaga atttggaaaa ataacaatac cgctgcgtat
    14281 ggtcttagta acttctgcgc ctgcgaagat tgccccgctt agctcaaaaa cagctgctat
    14341 aattaaagct tgtttaatgg ttactgtttt tgcgccaacg cttgttccaa aagaattggc
    14401 tacatcattt ccacctatat taaatgccat aaaaatgcca aatatagaag caagaataaa
    14461 aagaatcaat tgatgttgcg aaatataacc aaatccccaa ataacaaatg cgatagtact
    14521 gataataaaa ataacaaaag ctatgaggtt gtctttttgc attaataacc cttttttatt
    14581 ttaattatac acttatttac tttaaatttg ctaattttat tttttagtct ttgtggaatt
    14641 tttatttata ttattttttt ataataaata cttaaacaag aaataataag gaatataaga
    14701 ataatgaggg gtatttttta tataatagca ttgttttctt tactcaatgg cgatgaactt
    14761 acagaggctt tagcaaaaaa taataatcaa aattcttggg agcactttga ttataaaaat
    14821 accaaagaag ctccaaaaat tcaagaagag aatgtggatt ttaaaagcac ttttgatagc
    14881 ttactttcaa aaactttaga aaataataat ggtatagata aaacagatgg gaatttagat
    14941 tttcaaaatg aaaacgcgca ggttaaaaat ttaagttctc tttatgaggg ggagaataat
    15001 tctttgcttt ttcaaaaaga actttttgtg gctcaagata attataatta ctcagggggt
    15061 ttaatcaatc gttatgaaaa agatgatttt ttatttggag ttaatggttt tattgataaa
    15121 caaaaagaac aaaaagatac taaaagcttt ggtacagagt ttggttatag taaatttata
    15181 aaggcttata gtaattatta tatacccaat gaagcagaaa aaaaattaca gcttggaatg
    15241 agttttgtaa ttccaactta taccgctttt gcttttgata taagtaagga taatgataaa
    15301 actaattatc aagtatctta ctctccttat agtgtattta gtttaaattt attgcgtcgt
    15361 gattatagta caagagagac tgttgatgat actgttgttc aagttggatt tagttttaat
    15421 ttcaatgaaa gttttttaaa gcaatttaga aaaaaagata atactttaga ggaggttaat
    15481 cgatatgatt tcctccaaag aactcattag ttcattccag cattatgaaa tttttctgga
    15541 ttgtccatag cgtagcggaa tttttcccaa tcaatttgtt tatcccagat agcaacgatt
    15601 aaagctgcta ctgaatttcc gcaaagattt ccaaccgctc tcatttcaga cataaattta
    15661 tcaacaccta aaagaacacc tatagcagct actggtagaa cttgtgctaa ggttgcattt
    15721 gcttctgaaa tttccatatt tcctagagcc gcaagcgtac ttccaagcac tataaaacct
    15781 gatccagtta cacctactgc accttttgag gctatcatta atactattaa aatactgatt
    15841 tcgtgtgcta aacttaaatt tacattgaaa gcttgtgcta gaaagattaa gctcatagct
    15901 agataaatat ttgtacaatc aagattaaaa ctatatcccg ttggtaaaac aagtccgact
    15961 gttgctttag aaagtcctgc tttttctagt tttctcatta aaggagcaag tgcagactcg
    16021 cttgaactgg ttgcaaaaac gatcaatact tctcttgaga taaatctcat aaatttgaag
    16081 atatttactt ttgcaaaata acaaatcaga cctaagattc caaatataaa aacaagacat
    16141 gaaatcagca ttactaaaag taaatatgct aagttgatca aagagccaat tccgtattga
    16201 gctatgagta cagccattgc tgaaaaggcg gcaataggac taaaatacat aatgatttgt
    16261 agaattttaa aaacaaaatt ttgtaccact tcaaaaactc tttgaattgc ctgtttgtct
    16321 tctattctca ttaaagaaat aatcaaagca gtaattatgg caataactaa aacttgtatg
    16381 gtttttcctt ctgtaaaagg tgtgataata tcagtaggca tagcatcttt taaaatatgc
    16441 ataatctcag agctcgcact tacttctgtg gtttgagaaa tgtatttttg aacgcttttt
    16501 gtatcaagtt gacttggatc aagattcatt ccatggcctg gttgcataac atttgccata
    16561 aaaataccta tagcaagtgc taaagtactt acaacttcaa agtaaataac cgctttagca
    16621 ccaatgctac ctactttttt taaactttca agactaatga tgcccaaaac caaagtaaca
    16681 aaaataatag ggcctataag aacctttaaa gcacctataa aataatcaac tcctggtttg
    16741 ctagcaatgg ctaattcttt atctgtatag ccaagtacaa tacctgtaat aatgcctata
    16801 atcacccaaa atccaagact ttttataata cgtttatata aaggcggttt tctttcagct
    16861 aaagtttgac ttaaagtttc caagtttatt cactcctttt gatctttgta aaatataatt
    16921 ttaacaatgt gtatcgtaaa ttttaacaaa aaaacaaatc tagaaatact ttcttttata
    16981 tgatatgata attttttata taaacgttac aaaatttctc attatttgca ttataaaatt
    17041 taaaatattt ttgaaaattt tataattttg taattcagtt tgctttttgt tatttattat
    17101 tggtaataat tctatttttg atttatttgt tttattggga tgttttaaat tatgaaagaa
    17161 atagttttgt ctgaaaatgc tttaattact tctaaaacag atcttaaggg gaatatcatt
    17221 tatgccaata atgacttttt aaaatacgca ggttataaag tcgatgagct tttatataaa
    17281 tctcataata tagtaagaca tgaagatatg ccacgcactg tatttaaatg tctttgggat
    17341 tatattcaaa aaggagatga aatttttgca tttgtgaaaa ataaatccaa agatggtaat
    17401 ttttactggg tttttgcaaa tgtaagtgct tcatttgatg ctaatggaga tatcatcaat
    17461 tattattctg ttcgtcgtgc acccaataga aaatctcttt ctataattga agaagtttat
    17521 aaaattttac ttgaaaaaga gcaaaaatca ggcattaatg ctggagtttc agctttaatg
    17581 gatattgtaa gttcttataa aatgacttat aatgaactta tttttaactt acaagaaaat
    17641 aactaaataa gatatattta atctttttta ttgtataatt ttcgcctaaa aattaaagta
    17701 atatattatt aaagtattgt tttgatttat gatttcaaaa aattttcaat aaaaggggta
    17761 aatttatggt gaaaaatgga ttattatcaa ctatttttct aagtgttatc ggtgttttag
    17821 gtgtcatttt tattcatatt tttgttggag cgataatttt tgttttaatc gctgttttaa
    17881 tgatttattt gcttagacaa cacaaagatg agcaaataat gatagataaa cttttggttc
    17941 tttgtagaga gttaaaagaa ggaaattttg acaatagaat tatctatgta aaaacaaaaa
    18001 gcaaaaaatt agccgaaata gcagataatc ttaacaatac tattgatggg ctagaagctt
    18061 acttaaggga aattaatact tctatttctt gttctcaaaa aggtgaattt tatcgcaagg
    18121 ctttgcctga aggtttaaaa ggaatttttg ctcataatat cgaatttata aataaagctt
    18181 tagcaaacat agaagtgaca gcaagatcta cttttaaaaa tgctttatca agaactttaa
    18241 tggatttaag ccttggaaat caaaataaag acatgtctca aatttctagc tcattaaatc
    18301 aagatattag catgatgaag aatgtatatg atacagtgga tgccatttct catacagcta
    18361 cagaaaatgg ttcagaggtg gattctcttc aaagtgctat gggttcttta atggatgttg
    18421 taaattcgag caaggagaca gtacaaactt ttgtggctaa ttcacaaaat atcacttcag
    18481 tggttgaagt aatacgcgat atagccgatc aaaccaatct tctagcttta aatgctgcta
    18541 ttgaagctgc gcgtgcagga gagcatggta ggggctttgc ggttgtggct gatgaagtta
    18601 gaaagttagc agaaagaact caaagatcta caagcgaaat ttctattgca attcagacta
    18661 tgcaacaaga ttttgtaaat atccaaagtg gcagtgagca agtttttaac attgttagtg
    18721 aatctgaaga aagaattaat aaattttctc aagcttttaa acgtctagaa gaaaatagta
    18781 gtgctcttgg tgttaatttt ggatcctttg caaagagatt gattttgtct gtggttaaaa
    18841 tcgatcatat tctttataaa tcaaatatat atttaaattt aaatggggct caaaatttta
    18901 atcttgaaag tgtagatcca atttctaatc tttgtcaaga tgagagagct caaggtgtta
    18961 ttaatgagct tagttctgaa actgagttaa atttagctaa agaatttata aaagataacg
    19021 ctaaaaaagc aatagaagaa tcaagtcaag attatatcga tcaaaaagct tatgatgcga
    19081 ttgtaaatga tattaaatca ctagagcaaa gaagtgctga aatcttagca aaattaaaaa
    19141 tataaattaa gagggtggga aaatgtcaag agaaattttt ttacaagaag atagtttaat
    19201 tacttctaaa acagatttaa aaggtaaaat agtttatgca aatgatgatt ttttaaagta
    19261 tgcaggttat accatgggtg aagttttaaa taaacctcat aacatagtaa gacatgaaga
    19321 gatgccaaaa actgttttta aatatttatg ggattatatg aaagaaggca aagaaatttt
    19381 tgcttacgta aaaaataaaa ccaaagataa caattactat tgggtttttg caaatgtaac
    19441 cccatcaata gatgttaata ataatatcat aggttattat tccgttcgtc gtatgccaaa
    19501 taaaagcgct atttctacaa tagaaagtct ttatagcgat cttttaagag cagaacagca
    19561 acaaggctta aataagggtg ttgagatgct taaaaatttc tgcaaagatg cagataaaac
    19621 ttataatgag ctaatctttt ctcttcaaga agctaaataa atttttgtta gacttaaaac
    19681 gagtttgttt taagtctaaa tattatataa tctttctttt aaaaattcac atttttcaag
    19741 gcaaaatatg tttgatgtca ttgttatagg tggtggacat gcaggtgttg aagcaagtgc
    19801 tgctgctgct agaatgggta aaaaaacctt acttttaact acattgattg agcaaatagg
    19861 agcggcaagt tgtaatccag ccataggtgg acttgctaaa gggcatttgg taaaagaact
    19921 tgatgccatg ggtggtctta tgggtgaaat caccgatgaa gcagggatac aatttcgcat
    19981 tttaaatgaa agtaagggtg tagccgttca aggaagtagg gcacaaattg atatggataa
    20041 ataccgtatc attgcacgta ataaactttt aaaacttcca aatttagaaa tttctcaaga
    20101 acaagcgagt gttttaatcg tagaaaatga tgaagttaaa ggcgtaaaaa caaatttaga
    20161 aaatatatat tttgccaaaa aagtcatcct aacaacagga acttttttaa atggacttat
    20221 tcacgtaggt gaaaataaac ttcaagcagg aagggtaggg gagcttgctt cggtaaattt
    20281 aggaaattat ctgcaaactt tgggtttaaa aatgggacgt ttaaaaacag gaacttgccc
    20341 aagagtagat gcaaaaagca ttgattttag tgtgcttgaa attcaagatg gtgatgtaaa
    20401 tcctaaagct tttagttttc gttcaagaaa ttttaatcct actcaacttc cttgttatat
    20461 tgcacgcact aatacaacta cacatgagat tattaagaat aatttttatc gtgctccact
    20521 ttttacggga cagattgaag gtgtggggcc aaggtattgt ccttctatag aagataagat
    20581 caatcgtttt agcgacaaag aaagtcatca tctttttata gagcctcaaa ctatcgatgc
    20641 gacggagtat tatattaacg gtttttctac ttctttacct tatgaagtac aaactcaaat
    20701 gttgcgttct gtaaaaggtt ttgaaaatgc taaaataacc cgttttggtt atgctataga
    20761 atatgattat atagagccaa ctgaacttaa gcatacttta gaacttaaaa agattaaaaa
    20821 tctttattgt gcaggacaga ttaatggaac tacaggttat gaagaggctg cagcacaagg
    20881 ctttatggca ggaatcaatg caagtttaag catagatatg aaagagcctt tgattttaag
    20941 gcgtgatgaa gcttatatag gagttttaat cgatgattta gtaataaaag gtacaaaaga
    21001 accttataga atgtttactt caagagcgga atttagactg cttttaaggg aagaaaatgc
    21061 tatacttaga cttggaaaat atggctatga tttagggctt ttaagcgagc aagattttac
    21121 ttatatacaa aatatcgcaa acaatcttca aaaaggactt gaatttttac tttctaaaga
    21181 atttacgcct aacaaccaaa ataatgcttt tttagagagt ttaggagaag ataaaatttc
    21241 ttctatagtc aatcttcaaa aaattgttgc aagagcaagt tttgatatag aaaaattaaa
    21301 aaaacttgac cctatatttg aaaccatgga tcattactcc ttaagagaga ttttaaatga
    21361 ggcaaagtat tatcattaca ttagtatgca aaaagctcaa gtagaaaaaa tgaaaaatct
    21421 tagtgagctt aaaattcctg aaaattttga ttttaaaagt gtaagtggtt tgagtaatga
    21481 ggttgtagaa aagcttaatc atcataaacc tccaaccatt tttgctgcaa gtcaaatcag
    21541 tggaatcact cctgcagcgt tggatatttt gcaaatttat atcaaaatgc aaaagaaaaa
    21601 agcttaaatg cttgcttttt ttattttttt atctacttta gttttacttt tttggcgtcc
    21661 atggaattta cctatttggg tattttctag cttgggggct ttttttgttt ttatttttca
    21721 attggtagat tttaaagatg ctttttttgt tttttctttg gtttgggata gttctttaac
    21781 tttggttggg ttgattatcc tttcttttag cttggaagct ttgggatttt ttgattttat
    21841 tgcgagtaaa attttgtatt tttctagaga gaaaaatcaa gaaaaaattt atatcagtac
    21901 aaaaaaaatg atgttatttt tgttgatttt tgtatttttt ctttctgcat tttttgctaa
    21961 cgatggagcg attttaatca ttacacctat tattatagct ttattttcaa ctcttaaaga
    22021 ttgtaaaaat catgctttta ttttaagttc ttttttactt agcctttctt ttttatgtga
    22081 tgcaagttca aacgctttgg ttatttcaaa tttaaccaat atcatcacag caaattattt
    22141 taagatagaa tttttagaat ttgctaaaaa tatgtttttg ccaaattttt ttgttttgct
    22201 ttctactata gttacggttt ttgtgcttta tgtgagagtt ttacctaaaa ggcttgaatt
    22261 taaattaatc aaaaaagagc aaatttcatt gaaattgttt tttctttgca tagtattttt
    22321 atttcttttt gttatcagtt tttttatagg tgaaattttt aatattaaaa taagtttttt
    22381 tgctttgctt tgggcgggaa ttttttggct tattatttta aaaattcaag gtaaaaaaag
    22441 tattaaaatt ctttttgaag caccttatgg agttttgctt tttagttttg ggctttatat
    22501 ggtggttttt gctttacata aaataggtgt gagtgaaatt ttggttaaaa gctatgcttt
    22561 tttgatgcaa gataagagtg gaatttttgg tgtggctttg atttcagctt ttggatcttc
    22621 tgtgtttaat aatttgccta tggttttaat cggagatttg gcattaaaag aatattttga
    22681 gaatttttct tttgattctt tgatgattta tgcacatctt ttaggtgtaa atataggtcc
    22741 aaaacttacg ccaataggtt ctttagcaac tttgctttgg cttggagttt tggctagaaa
    22801 aggcattaat atttcttttt ggcaatattg taaatttggc tttttgataa ctttacctgt
    22861 gcttgttttt tctctttttg ctcttattgt ctaaatatca aaacttgtta aacaaagaaa
    22921 aaatttattt taatttcgat aaacttttaa cttggttaaa aaataaaatc gaaaggagca
    22981 agttatggct acatctgaga gtagacgaag ctttatgggc tttgcatttg gaagcgtagc
    23041 tgctgtaggc ggtgttttct cacttgttgc gatgaaaaaa acttgggatc cgcttccaag
    23101 tgttaaagct gcaggtttta ctacagtaga tttatcagga atgcaagatg gagagcttag
    23161 aactatagaa tggcgtaaaa agcctatttt tatattaaaa aaagatgcga gtatgccaaa
    23221 agatgaaaaa cgtgatgttg tggtagataa cgcagcttat actgtggtta taggactttg
    23281 tacgcatttg ggttgtatac ctgcttacca accaagtgag caattgttta aatgcgcctg
    23341 tcatggtgga gaatttgaca caagtggaaa aaatgtcttt ggacctcctc caaagcctct
    23401 tgaaattcct ccttttaaaa ttgatggaac caagcttgtt ttaggtgaag agggtcctga
    23461 atataaaaaa atgatagcgg aggcttaaga tggcacaaat tagaaaagct aatggtcttg
    23521 tagattggct tgatcaaaga cttgcggtac ataaactgct tgatgtttta atggtaaaat
    23581 attggatacc aaagcaaatt aactttcttt gggcaatggg ggttatttta accactcttt
    23641 ttgcagtgct ttttgttaca ggacttttac ttgtgatgta ttataaacca gatactgcac
    23701 ttgcttttga tagtgtgaat aagactatta tgcaagaggt ggactatgga tggctttggc
    23761 gtcacatgca tggtgttgcc gcttctgttg tatttttgat tatatacata catatgctaa
    23821 caggaattta ttacggttct tataaaaaag gtcgtgagat gatttgggtt agcggtatgc
    23881 ttttgtttgt tgtattttct gctgaagctt ttagtgggta tatgcttcct tggggacaaa
    23941 tgagttattg ggcagctcaa gtaatcacta atctttttgg agggatacca tttattggcc
    24001 ctgagcttgt gatttggatt cgtggagatt atgcggtttc tgatccaact ttaacaagat
    24061 tttttatgct tcatgtgtgc ttgcttccta tagttatcat tgctattata gcatttcact
    24121 tctattcttt aagaattcct catgttaata atgaaatttc tgaagaactt gactttgatt
    24181 tagaggctga aaaatacatg gcaggtgaca caaagggttc taaagtgatt cctttttggc
    24241 caggattttt atcaaaagat tttatgtata taagcttttt tatgattttc ttcttttatt
    24301 tggtctgttt taaatttgaa tttgcaatgg atccaattaa ttttgatcca gctaatgcgc
    24361 ttaaaacacc agctcatatt tatcctgagt ggtatttctt atggagttat gaagttttaa
    24421 gaggattttt ctttgatatt gcaggtatta aagcttttga tataggtttg gctgcatttg
    24481 gtattgctca agtgattttc ttcttgcttc cttggcttga tagaagtgat gtggtaaaac
    24541 cagctcatga aagaccttta tttttcattt ggttttggat attgcttatc gatttaattg
    24601 ttttaacagt ttatggaaaa ttacctccaa caggtgtaaa tgcttgggta ggattttacg
    24661 cttctatagt atttttactt ttacttattg tagttttacc ggttattact attatggaga
    24721 gaaaaggagc taaacaatga gagaaataaa aatattttta gttgtagtag tttttactgc
    24781 acttgtatat tggggggtag agccttatgc tcattcagtg atgaagcctc atgttgctcc
    24841 tgcaaatttt gattttgctg ttgaagatac tacttttgca aaaggtatag ttgaagctaa
    24901 agaattagct ctaaaagatg cacaagcttc aggagatgct aaaagaatag agagtgcaaa
    24961 caaagaactt gaaaaagcaa aagaagaatt aagcaaggtt gaaacacttt gggcagatgt
    25021 tgcaaaaatc gattttgcta agggtgatgc aaaaaaaggt aaagaatttt ttgaaaatat
    25081 ctgttttgca tgtcatggtg taaaagaaga tggaatagca gctaatatta ctgattcttc
    25141 tatgggagta ataccgcctg atcttagtgc agctggtgct atttttgatg aaaaattttt
    25201 agcagctttg attatgcatc ctgcgcttgc tttaaaagta gatcataaat ttggcgatgc
    25261 ttttattatg acagcttaca ataaagatac ttcaggagaa agtgaagaag ctacaaatgc
    25321 aaatatagcc aatgtaattg cttatcttaa agatgtgagt gttaaatttg aagccaatga
    25381 agatgctact attaagaaag atgttgaggc aaaatatgct aaaatggaaa atagtgctca
    25441 aaaagcagct ttaatggaaa aagatataaa atttgctaaa gataaagcaa cttttattga
    25501 ggcttgcgga cgttgtcatg atatgaaata cgatagcttt tttactccat caaatcaaaa
    25561 tgatttaaaa acttatttag gttctgttcc acctgatctt tctatgatga taagatctcg
    25621 tggtgagcaa tatttacatg attttattaa taatactcaa aaacttcttc caggaaccgc
    25681 tatgccaaga gtaggtttaa cagaagctgc acaggctaag gttgtatctt atattgatca
    25741 agtgggtgat agcaaaaaag aagaaagaaa aactacagga atttatgtaa tgatattctt
    25801 tgtaatttta agtatttttg ctataggttg gaagcgttct gtttggtcta aattacatta
    25861 gtattataaa
//
LOCUS       DAQSLY010000010        24260 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.010, whole genome shotgun sequence.
ACCESSION   DAQSLY010000010 DAQSLY010000000
VERSION     DAQSLY010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24260
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.010"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            24..266
                     /locus_tag="R2H98_000316"
     CDS             24..266
                     /locus_tag="R2H98_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023238.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            263..1564
                     /gene="miaB"
                     /locus_tag="R2H98_000317"
     CDS             263..1564
                     /gene="miaB"
                     /locus_tag="R2H98_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEE9023239.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETMDILEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEETASRRLSTLQNRHSEILDEIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            1548..2177
                     /locus_tag="R2H98_000318"
     CDS             1548..2177
                     /locus_tag="R2H98_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEE9023240.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            2179..3138
                     /locus_tag="R2H98_000319"
     CDS             2179..3138
                     /locus_tag="R2H98_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEE9023241.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNIQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNNDTEVTLDNFNEALNNKF
                     DLLDQENNLETLNNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            3135..3662
                     /locus_tag="R2H98_000320"
     CDS             3135..3662
                     /locus_tag="R2H98_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023242.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            3652..4170
                     /locus_tag="R2H98_000321"
     CDS             3652..4170
                     /locus_tag="R2H98_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023243.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(4162..5454)
                     /gene="thiC"
                     /locus_tag="R2H98_000322"
     CDS             complement(4162..5454)
                     /gene="thiC"
                     /locus_tag="R2H98_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEE9023244.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFDIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQIGAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGVQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     regulatory      complement(5511..5615)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(5629..6399)
                     /locus_tag="R2H98_000323"
     CDS             complement(5629..6399)
                     /locus_tag="R2H98_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEE9023245.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFILKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPENITELTGITYEMVENAPSLTKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEILKYCLGKLPYHIKTTEELINFTKTATHKAKINI"
     gene            complement(6396..7043)
                     /gene="rpe"
                     /locus_tag="R2H98_000324"
     CDS             complement(6396..7043)
                     /gene="rpe"
                     /locus_tag="R2H98_000324"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEE9023246.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            7183..7377
                     /locus_tag="R2H98_000325"
     CDS             7183..7377
                     /locus_tag="R2H98_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEE9023247.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            7562..7777
                     /locus_tag="R2H98_000326"
     CDS             7562..7777
                     /locus_tag="R2H98_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEE9023248.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            7787..8884
                     /locus_tag="R2H98_000327"
     CDS             7787..8884
                     /locus_tag="R2H98_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEE9023249.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLRNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(8916..9512)
                     /locus_tag="R2H98_000328"
     CDS             complement(8916..9512)
                     /locus_tag="R2H98_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEE9023250.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFAEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(9595..11628)
                     /locus_tag="R2H98_000329"
                     /pseudo
     CDS             complement(9595..11628)
                     /locus_tag="R2H98_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862692.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(11802..12740)
                     /gene="accA"
                     /locus_tag="R2H98_000330"
     CDS             complement(11802..12740)
                     /gene="accA"
                     /locus_tag="R2H98_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEE9023251.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(12742..13956)
                     /locus_tag="R2H98_000331"
     CDS             complement(12742..13956)
                     /locus_tag="R2H98_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEE9023252.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(13983..14216)
                     /gene="acpP"
                     /locus_tag="R2H98_000332"
     CDS             complement(13983..14216)
                     /gene="acpP"
                     /locus_tag="R2H98_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEE9023253.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            14326..14994
                     /gene="tenA"
                     /locus_tag="R2H98_000333"
     CDS             14326..14994
                     /gene="tenA"
                     /locus_tag="R2H98_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEE9023254.1"
                     /translation="MMLFSNLIKENQKIWDAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(15018..15875)
                     /locus_tag="R2H98_000334"
     CDS             complement(15018..15875)
                     /locus_tag="R2H98_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEE9023255.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLAKAKNTLDKGAKERIN
                     TFLAKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDTF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDASKIA"
     gene            complement(15879..16844)
                     /locus_tag="R2H98_000335"
     CDS             complement(15879..16844)
                     /locus_tag="R2H98_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEE9023256.1"
                     /translation="MKIIIDCFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKDCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGSDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEWHKDLVKMIKAAQEAAVKE"
     gene            complement(16841..18676)
                     /locus_tag="R2H98_000336"
     CDS             complement(16841..18676)
                     /locus_tag="R2H98_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEE9023257.1"
                     /translation="MGEFSRRDFIKTACISVGALVASSSGVYALDDSSKMDKDANLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGEIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FEKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDIVVTEFSLDGRRVQ"
     gene            complement(19013..19423)
                     /locus_tag="R2H98_000337"
     CDS             complement(19013..19423)
                     /locus_tag="R2H98_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEE9023258.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(19430..20173)
                     /gene="fabG"
                     /locus_tag="R2H98_000338"
     CDS             complement(19430..20173)
                     /gene="fabG"
                     /locus_tag="R2H98_000338"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEE9023259.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(20245..21723)
                     /locus_tag="R2H98_000339"
     CDS             complement(20245..21723)
                     /locus_tag="R2H98_000339"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEE9023260.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGGGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDASPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLIEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDKKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            21803..22864
                     /locus_tag="R2H98_000340"
     CDS             21803..22864
                     /locus_tag="R2H98_000340"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEE9023261.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWMENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            22864..24072
                     /locus_tag="R2H98_000341"
     CDS             22864..24072
                     /locus_tag="R2H98_000341"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEE9023262.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQEAKNLQSEYDFFYDVMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYEKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVTILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYEPLNSFVMEKNKLEEIKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         8396 a         4425 c         3268 g         8171 t
ORIGIN      
        1 tgaaaattct taaggattta gctatggaat taaaattggc aagaactttg attaatgaaa
       61 aacctaaaaa tattagccta gaaaaaatcg aagaggctat agaaaaagaa ggacaaaagt
      121 ttttttattt tgataaagat aatacacaca aacaactcat tgcccttgta aatcattttg
      181 aaaaaaaagg agtaagcatt tatcatagaa ccgtaaaata cggacttgat gataatgatt
      241 ttatgtatga ggtacatatt ctttgagtgc taaaaaactt tttatccaaa ctttaggttg
      301 tgcgatgaat gtcagagatt ctgagcatat gatcgcagaa ttaacacaaa aagaaaatta
      361 cgcactaaca gaagatatca aagaagcaga tcttattctt atcaatacct gttcagtgcg
      421 tgaaaaacct gtgcataaac ttttctcaga agtaggtggt tttgaaaaag ttaaaaaaga
      481 aggtgctaaa ataggagttt gtggatgtac tgcatcacat ttaggaaatg aaattttcaa
      541 acgtgctcct tatgtggatt ttgttctagg agcaagaaat atttccaaaa tcactcaagc
      601 tataaaaact ccaaaattta tgggcgtgga catagactat gatgaaagtg aatttgcttt
      661 tgcagatttt agaaatagta tttataaatc ctatattaat atctccatag gttgtgacaa
      721 acactgcact tattgtatag tgccacatac tagaggagat gaaatttcca taccttttaa
      781 catcatctac aaagaagctc aaaaagctat tgaaaaaggc gctaaagaga ttttcttgct
      841 aggacaaaat gtcaataact atggcaaaag atttagaaac gaacataaaa aaatggactt
      901 ttcagatctt ttagaagaac ttagcactat agaaggtttg gaacgcattc gctttacaag
      961 tccacatcct ttgcacatgg atgataaatt tttagaagtt tttgccaata atccaaaagt
     1021 ttgcaaatcc atgcacatgc ctttacaaag cggctcaagt gaaattttaa aagctatgaa
     1081 gcgtggctat actaaagaat ggtatttaaa tagagcttta aaacttagag aactttgtcc
     1141 aaatgttagc atttctacag acattattgt agcttttcca ggggaaagtg aaaaagattt
     1201 tgaagaaact atggatattt tggaaaaagt gcgttttgaa caaatttttt cttttaaata
     1261 ctccaaacgc cctttaacaa aagccgcaac catgcctaat caaatcgatg aagaaacagc
     1321 ttcaagaaga cttagcacct tacaaaatcg tcatagtgaa attttagatg aaattgtaaa
     1381 aaaacaagaa aataaaactt ttaaagtttt atttgaagaa ttaagagcag gcaatagcat
     1441 tgctggaaga acagataata attttttagt tcaagttgaa ggtagcgaag aacttttagg
     1501 gcaatttaaa gaagtaaaaa taactaatgc aaagcgtatg gttttatatg gggaaatcgt
     1561 ttaaaatcca ttgcttaaca tatataattt tcatcttgca atggcttatt tttttaagct
     1621 gtaaaaagca ctataaaggt gaaaaagttg accgtaaagc tggtgtgata cttttttggc
     1681 atggaaaatt agcactcatg ccttttgcgt ttagacatta tagacaaaaa aataaaaaag
     1741 cctatgtcat gatctcccac cataaagatg gagaacaaat tgcaaaaatc atcaagcttt
     1801 tcggtcttga tactgtaaga ggaagcactt caaggggtgc tagcagtgca cttagagctg
     1861 catttaaagt tttagaacaa aatgacgata tagttatcac gcccgatggt ccacgagggc
     1921 cttatcatag tatttcagat ggttctatca ttttggctca aaaaaaagaa ctaaagataa
     1981 gaattttaaa ctatgaagca aatcgttttt ggaaatttaa aagttgggat aagatgatct
     2041 tgccaaaacc ttttagtaag attacttata gtctaagtga acctttggat attttatctt
     2101 tagataaaga aaaagctaaa gaatttctaa tgaaacaatt tgataaaatt agcttagctg
     2161 atcaatttaa ggaatgaaat gttattttta cttaaaaaaa tatttccaca actttttatt
     2221 agtattattt tagaagataa aaaaaatatt gtaaaagctt ctatttatag aggaaataaa
     2281 ctaatcagta gcaatgaaaa aacttttgat aaaagcgaaa atttactaga atacataaaa
     2341 aatttaagca agcatttctt attttaccac actgctttat ttttagatgc caaagaacaa
     2401 ggattaatac ctagtacaaa tattcaagat tgtgagcact ttaatatagg aaaaatcagc
     2461 ttacagcata ttttgtttaa taatgccctt gtttatacgg ctaccgaaca tgtggaatat
     2521 tatagcgagc tttttgaaga atatagaggt ttagattttt tatattcccc ttttgctctt
     2581 ctttactaca atatacaaaa agaaaaacag cctgatgatc aaattttact ttatggattt
     2641 aagcaaggac atcttttggc aattattgtt gctaaaggca atactatttt atacggtgat
     2701 tttaaaatat ttgagcaaga attaggttta gagcttgaac ttccatcaga agataatcaa
     2761 gaaattgaaa acaacaacaa tgatactgaa gttaccctag ataacttcaa tgaagcctta
     2821 aataataaat ttgatctact tgatcaagaa aataatcttg aaactttgaa taataatgat
     2881 aattttaatc ttgatgaatt aaatcaattt agcaatgata tggaactatg ccgttatatt
     2941 attacgagca ttgaaaaatt ttataatgat gataaatatg ctggggtatt tatcaatggt
     3001 attttattat atagtgaatc agatattaac ataagtgcta ttgatttttt agaaagtgaa
     3061 acttttttag agataaaaac gaaacaaatc aacaccttag atcttatgat agaattgatg
     3121 caaaaggagc ttaaatgact tatagcttca tacagccaag aaaaaaacct attttcacac
     3181 tctttgataa aatttggcta ggactttttg gttttagtat attatttatc ttgctagtat
     3241 attttacata tacaataaaa attgcattaa tcaatagctc tatcgatgat gaaaaacaac
     3301 aagttatagt gcttcaaaat caaactaagc aaaatgaaat gctttatgaa attttatttg
     3361 atcaaagcca aatagcgaaa aattttaaca ctcaaaatca aattgttaaa gaaagcttaa
     3421 gaaatctatt tgatattatt gtaaaaactg ataatattac tcttgaaagt gttgaacaag
     3481 acgaatattc cttaaaactt atcggagtca ctcctacaag agaaatgttt actctacttt
     3541 tagaaacccc tttaaaaagc atctttgatc aaagctatac aacctattat cgcttagata
     3601 atgggtggta tcgttttgtt agtattagta aacaaattcc aggagttgca gatgaaagat
     3661 aaaagtctag aagaaattga tttattaaag cttatcattt gcgcgttaag ttttataagc
     3721 gtttgcacag ccttgatctt atttttactt ttaccgacat taaaaaatta caaacaagca
     3781 aatcttagag aaaattcaca acttgctatc ttaaaagccg ctaaatcaaa atttgacttt
     3841 agtgaagata aaatatcaac tctaagaagc gaaaacaaca aaagtttaga gcaatttgag
     3901 caaaatttta atataggaaa ttttgatatt tttttacaaa aatattttca aaatgtaaaa
     3961 attcaagaaa ctaagcccga aaaacaagaa aaatatctaa aaaaccgctt agccattaaa
     4021 gcgacaatga acaatcctag aagactttat gattttattg atgctctaaa aaactataat
     4081 aacttaatca agcttgatta tccacttaat cttaaagcag gagagcaagg catctctata
     4141 gatcttactc tcaaagttta ttcaagctaa actcacatct tcgcctttta aaatttgatt
     4201 catagtattc attgcacaca tttttccaca catggaacat gagtttaaat catcagggcg
     4261 acgctcatta aacatttttt tagccttttc tccatcaata gcaagtttaa acattttctc
     4321 ccaatctatc tcttgtctag ccttactcat ctcatcatct cttgctcttt cttttggaag
     4381 tttagctata tctcccgcat gagctgcaat tttagtcgca actataccct ctctaacatc
     4441 ttctaaattt ggaagtctta agtgttcagc aggtgttaca taacacagca tatcagcacc
     4501 gctagctgca gccacagctc ctccaatagc accactaata tgatcatacc ctgcgccaat
     4561 atctgttacc aaaggtccta agacataaaa aggcgctcct ttgcataaac gcttttctaa
     4621 ttgcatattt gcctctattt cattaatagc catatgccct ggaccttcta tcattacttg
     4681 aaccccaaca tcccaagctc tttgagtaag gagtgacaat tctataagct ctgaaatttg
     4741 cgccccatca cttgcatcgt gagtagagcc aggacgcaaa gcatcgccca aagataaagt
     4801 tacatcgtat tttaaacaaa tgtcaagcaa atcatcataa tactcaaaaa aaggattctc
     4861 agcatctttc atcatcatcc aagcataaag cacagagcct cctcttgaaa ctatatttgt
     4921 aagtctttta ctttgtttaa aaatatgcgc tgcgcgagaa ttaatacctg catgaattgt
     4981 cataaaatca accccacttt tagcatgatg atatacaaca tctaaaaagt ctttagcacc
     5041 aatttgtttt aaatcttttt ctaaaaatcc taccgcatca tatacaggaa ctgttcctat
     5101 catagctttt gaaacattaa caagctcgtc tctaaaacga cttgttttgc cataattgct
     5161 taagtccata atcgcttcta tgtcaaattt atgagcaagc tctacttttt tcatttcctc
     5221 gctataatca acgcaatcat ttgaaactcc taaatttaca ttaaccttag tacgcagtcc
     5281 aaaacctata ccatttggat caagactttt atgattaata tttgcaggga taataatttt
     5341 accgcaagca atattttcaa gcaaaaaatc tttacttaaa ttttcttttt gtgcaacaat
     5401 ctgcatttct ttagtaaaaa taccttcttt cgcataattc atttgagttt tcataaattt
     5461 atcctttaaa aaatttggat aaatgaaggg tgagtataaa tttttaaagt attgaaattt
     5521 ataaatcttc ccgacgctgg cattatccag atccggttcg gtctaagctt ttagcttact
     5581 ctcagcctgt tacacaagct cccgtcattt atgttttaat tatacacttt aaatatttat
     5641 ttttgcttta tgcgtggcag tctttgtaaa atttataagt tcttctgtag tttttatatg
     5701 atagggaagt tttccaaggc aatatttcaa aatttcagca gctgccaaag catcatctaa
     5761 agccctatga tgcgtatttt ccacgcccag aaattctttc aaaacctcta gtttatattt
     5821 tggactttct atacaacatt gtgcaaattc tatagtacaa atacgacgat taagtaaaat
     5881 gccaaaacca cactcattta aagccttaga aataaaacta taatcaaaac gcacattatg
     5941 tgctacaaaa atactgtctt ttaaaaaaag cctaaaatca cttaaaacct ttgttaaact
     6001 tggagcattt tccaccatct cataagtaat acccgtaagt tcggttatat tttctggaat
     6061 ttcttttact ttaacaaaac tttgaaagcg tccaatttct ttagaatttt gaatttttac
     6121 tgctccaatt tctaaaattt cccccttact tacaccgcca gtactttcta tatctactat
     6181 acaaaaaatt tcatctttaa tttttgttgt gcgtgtttta aggataaaaa tattatcttt
     6241 attcaaagtt aagcccaaac ccaaaagctc aaaagtttcc aaatctaaat caaaattttt
     6301 taattcttca actttggcaa actcttgcat cacccaatca taaggcttgc tttgcttgtt
     6361 taatatagaa ataatctgat caatttgctg taaactcaaa attcaagctt taaagatgaa
     6421 attgcagttt tataatcatt agaagaaaaa atataacttc cagccaccaa aatatcagct
     6481 ccggattcct ctaaatcgct agcatttaaa ccattaacac caccatcaac ctctataaaa
     6541 actttagcat tttttttatc aatcatttgg cgtaattctt tgattttttc atgtaccaaa
     6601 ggtaaaaatt tttgtccacc aaatccagga ttaacactca ttaaaagcac catatctaca
     6661 aattctagca tgtgtttaat agaatcaata ggagtgtgtg gatttaaaac aatagcagga
     6721 tggattcctt gacttcttat atattcacaa agccttatag gatgaacttc gctttccata
     6781 tgaaaagaaa tgaattttgg tttcaaaggg ataaaaagat ctataaattt acttacatct
     6841 ttaaccatca aatgcacatc taatggcaac ttactaatag ttgaaatttt ttcgatcacg
     6901 caaggtccga aagtcaaatt tggaacaaag tgtccatcca ttacatcaat atgtaaaaga
     6961 tctgcacctg cagcttcaat agctttaact tcttcttcta atttcaaaaa atttgcagac
     7021 aataaacttg gagctacata catgatcaaa accttaaact atatataaat gtgataaata
     7081 atattttatc gacttatata ttaaaaaaac tataaattat ggaatatttt aagcttaatt
     7141 ttgatagaat cttcatttaa aaattttcat aaggacaaga aaatggcaag agtatgtcaa
     7201 atcacaggca agggtccaat ggtgggtaat aatgtcagcc atgctaacaa taaaacaaaa
     7261 agacgctttt tacctaatct cagaacagtt cgtgtaactt tagaagatgg caccacgaga
     7321 aaaatgagaa tcgcagcttc tactctgaga actctaaaaa aacaaaattc taaataattt
     7381 tgaggattta ttcctcaatt ttaaaatttc caatttaaaa ataaacttta ataaatcact
     7441 tatataacac acatttaaaa attattatta attttattat tttttaagcc aaaaatatct
     7501 tttaatagtg taaaatacct tgttaaatga attttaaatt tcactaatac aaggagagtt
     7561 tatgctacat gaatatagag aattaatgtc agagctaaaa ggtaaagatg ctcattttga
     7621 taaactattt gatcgtcata atgaacttga tgacatgatt aaagatgcag aagaaggtag
     7681 aacttctctt agcagcatgg aaatttcaac tttaaaaaaa gaaaagcttc atgtaaaaga
     7741 tgaacttagc caatatctag caaattataa aaaataaggc aaaacaatgt ttggaagtaa
     7801 aataaaccat tctgatcttc aaaaacttga agaagaaaat aaaaatctta cacataaaat
     7861 tgaaaaattt caatcggaaa atttagaatt aaaaaataaa attacatcat tagaacaagc
     7921 ggctttagag tctaaactta aaacagatct tttaaatgtt ttattaactg gggttttaaa
     7981 aaatattact attattcaag gcgatatgtt agaaaatgta aataaggcag aagttatctc
     8041 tagctattct aaaacttctc ttgctgaaat ggatgaactt aaccatattg ctaattctat
     8101 caatgcctct ttgagaaata ttacagaatc agccaataaa acaagagatg ttgcaggaac
     8161 attgcataga agtgtagatg aaattactaa tgtaattaat ctaattaaag atgtttccga
     8221 tcaaaccaat cttttagctc ttaacgctgc catagaagct gcacgcgcag gtgaacatgg
     8281 gcgtggtttt gctgttgttg ccgatgaagt aagaaaacta gctgaaaaaa cacaaaaagc
     8341 aaccacagaa gttgaaatga atatcaacct tctaaagcaa aatgcaaatg aaatgtatac
     8401 tcaaagtgag caagttgaaa aaatttctat agattctaat gctcatatta tgagtttttc
     8461 tgaaaaattt actcacttgg taaatgaagc gcattctact aattcaaatg cagttggtat
     8521 cgcttcagaa gctttcgtat ctttagcaaa actagatcat atagctttta aattaaatgg
     8581 ttataaagaa attttttcca aatcaggaaa gcaattagcc gatcatacat cttgtcgctt
     8641 aggaaaatgg cttgctagca caggaaaaga aagatttggg caaaataaaa gcttcttaaa
     8701 aattaacgag ccacatgaaa aagttcatga aaatatgaat aatgctataa caatagcaaa
     8761 tacagaagat attagcaaag atattactca acacagcata attaataaat gcgaagttgc
     8821 tgaaaatgca tcacttgatc ttttcaatgt atttaaagaa atgcttgatg agtcagatca
     8881 ttaaaatccc aggttgaacc tttttaaggt ttaacctaaa taatctttaa ttttccccac
     8941 ttttccttta aaaaccacat ataagcaaaa tcaagcaaag gcgttcttat catattttta
     9001 catttttttt caaaatcctg caccttaaca taaacagctt caatctcttc atcatcaact
     9061 ccacctccag aagaaatttt atctttttca tcaacttctg cgaaataaaa gctttgcttg
     9121 cttacacctg aaccaaatcc tgtataaaaa tctcctattt tttctaaatt tttaggagca
     9181 tatcctagtt cttctataca ttcttctttt gctatttcct ctaaagataa ttttttatcc
     9241 acaagcccag aacaaagctc tatagtatag cccatatcat catcttttac ataatcttta
     9301 tcatgcattt gatgatacca aagtggtata cgaaattggc gtacaaaaat aaaactttct
     9361 aattctttat gatacaaaag cactgaaaca ctatctttag attctataaa atcccaagtg
     9421 caaagcctac cattactttc ataagcaaat ctcttaggct taatataatt tgatttttca
     9481 aaagaaagtt cttttaaatt tttaaacgcc ataataaaac cttttattta tttttcacat
     9541 tgtactttat ttttgctttt ttgaaaacat aaaggtgatt aaagccttaa aaaattaaaa
     9601 atcatattta taacttaacc aaaaacttct tccttctgta tagtcttgat agcgatttgc
     9661 atatccagca ggattagccc catcccatct tgtaacttgc ggatcaaaga aatttttatc
     9721 aaaaagattt tacactgcaa aacttaagct agattgctta ttgattttat aatttatccc
     9781 taaatctact atataaaaag gcttatattt ttgccatggc agactaccat taccgccacc
     9841 ttttgcttta gctatagtat caagtcttgc tcgtgttttt atataggaac taaatttacc
     9901 tcgctcatag tttaatttta acattgctat atgtcttggt aaattttcta ttctatcacc
     9961 accaaaccaa ttttttgacc atctttgtag cgattatcca taaaagtata acttgaattt
    10021 aggctaaaac cattgtaagt tttggtatta atgcaaattc tataccttta gtctgcgttt
    10081 ttccaagatt aataggacgc ttacaaacaa tgccattgct acaattaata tcattatttt
    10141 gcatacctgt taaatcttca ctactgattt gatttgtaaa atcagtaata aatcctgtag
    10201 tagaataatg cgcaaaatca aataccataa aatcaacacc caattcataa tttatacttt
    10261 cttctggttt taagtcaggg tttccaaaat aagcattatt attggcataa ttataatatc
    10321 catttgtcaa ctgcttggca gcaggagttt tatagccttt tgaaacacct cctttcaagg
    10381 ctatattatc atttaagtga taaaccaaat aaaccctagg cgtaaattta gaatcaaaca
    10441 aatcgctata aatataacgc aaacctgtag taaaaatcaa atcatcggtt ataaaatact
    10501 cattttcccc ataaagcgca accgtggttt gatcaagatt tttacctctt atttgactac
    10561 ctgcgcttgc ttgatcattt tttaatatct cataatcaat ccttgcacca aaggtattta
    10621 ctaaattacc gtattgacct aaattccaag gtaaaacaac cttaccttct cctacccaaa
    10681 tttggctatg cagctcctta tccttagtgc taccatattg taaatatgag ttagttgaac
    10741 caaaatcata gttaccatca tgatttaaaa caatattatc cttaaaaagt tgtctttcac
    10801 ttttaatagc cctactactt gtagaattca ctgaaatttc attaatatat cgttctatat
    10861 caaaatatat attattttta tcatctactg tccaattaag cctagaacca aaacccaagc
    10921 tagtaaaagc acctgggcta tgactagcaa tttgataatt atcaggtctt tgattgttat
    10981 tattccaaac cggtgtaggc cattttaaat cagaagctgc cttatcataa tacttcaacc
    11041 ttgcagaaat tgataatgta tcttcaatca aaggggttgc tacataagca ttaaaaccgc
    11101 ccgcattgcc atagtgatta gagtgctgtt gtaaaagagt attaaattct atatttgctt
    11161 cgattttatc aggatttttc ttagtgataa tatttatcac accgcctaca gcatcactgc
    11221 cataaagtgt agaagttgga ccacgtataa cctcaatacg ctctatcata gacaaaggtg
    11281 gcagatatcc tgactcactg ccactaaaac cattatcata aaacccattt gcaacacttt
    11341 gacgttttcc atcaattaaa actagagtat aagaactacc aaaacctcgt atgctaaaat
    11401 cataagtgcc tgttttattc atagtcacat ctacacctgg aatatctcct atagcctctc
    11461 ctatatcctt aattggcttt tttcaagctc ttcttttgta atgatagaaa tactagcagg
    11521 cgcatcaacc aaatcttgtt caaaaccact agcactaacc acaacatcat taagttgata
    11581 tttttcttct gcttttaaca aagctccaga taaaattaaa aaacacagta aacttttttt
    11641 taaattttat atttttgatt tgagtcaaat taattccttt aaaaataatt attttgatat
    11701 ttaaaatcat ttttgaagta taaaaaaaga atacttttaa ttaacttaat tttgataaca
    11761 attataaata ataaaattat ttaaaaaagc gaagtaaaag cctaagcctc ttgataggct
    11821 ccaagcttta aaattttctg catacgattt gcagaaagtt ctcgtacatc aatattttca
    11881 agttcattta gagatttttt tacataatca gcaatagcta ctgctgcagc ctctttattg
    11941 cgatgtgcac catttgtagg ctcatctata acatcatcaa ttaaaccttg agattttaaa
    12001 tcatcagccg ttaccttcat agccttggtt gcagcttcac tttttgcagg atcattccaa
    12061 agtattgcag cacaaccttc aggagaaatt actgaaaaaa cagaattttt catcattgca
    12121 agtttatctg caacccctat agctaacgcc ccgccactac cgccttctcc gataactata
    12181 gcaatggtcg gtattttcaa atcacttaat tcatataaat ttctagcgat agcttcactt
    12241 tgtcctcttt cttcagcacc tattccagga taagcacctg gagtatctat caaaaataaa
    12301 ataggaattt gaaatttctc tgcaagtctt gctactctta aggctttgcg atatccttca
    12361 ggatgtggca tcccaaaatt tctagcgatt ttatcttttg ttccacgtcc tttttgctca
    12421 ccaattacaa ttattttttt ctctcctaaa taacccataa aacaaacaat agcaggatca
    12481 tctctaaagg cacgatcacc atgtatttcg tgagcgtcat ttaaaataag ttcaatatag
    12541 tcaagagcat aagggcgatc tggatgacgc gctaattgca aacgctgaaa atcacttaaa
    12601 ttcttataag ttttagaaat ttctttttca agatttttct ttaaaatcga tacagcttca
    12661 gtatctcctt taatctgagc attgataatg tcctcgtcaa tttgctgaat atttttttca
    12721 aaatctaaat aagaagccat attaatctac ttttttaaat acaacacagc catttgtgcc
    12781 accaaaacca aaagaattac tcatcaccac ttttaaatct acttttcttg atatatttgg
    12841 aatataatca agatcacatt catcatcttt tacaagctga ttgattgtag gtggaactac
    12901 cccatctctt aaagccataa cactaacaac tgcttcaatt gcacctgcag cacccaagca
    12961 atgacctgtt tgtcctttgg tggaacttat aagcgggata ttattgccaa aaagctcttt
    13021 aattgctgct gtttcatttt tgtcatttac aggggttgaa gttccatgtg cattgatata
    13081 atctaccttt ggattccctg ccatatttaa agcttttttc atagctctta aaggcccatc
    13141 taaagttggt gaagtaatat gatgcgcatc tgcactttct ccaaatccaa ttaattcagc
    13201 ataaatcgta gcaccgcgtt ttttagcctc ttcatattcc tcaaaaacta aagctccagc
    13261 accttctccc atgacaaaac catctctttc tttgtcaaat ggtcttgaag catgctgtgg
    13321 atcttcattt ctagttgata aagctttcat tgaagcaaaa ccacctatac ctacaggaca
    13381 aatcgcagct tctgcaccta tgactaacat ctttttagca tttcccaaag ctatactttt
    13441 ataagcttct cctatagcat gagttcctgc tgcacaagct gtaacacaag aaatatttgg
    13501 ccctttaagt ccatgctcta tagaaatcaa acctcctaac atatttacaa gtgctgaagg
    13561 tatgaaaaaa ggggaaattt tacgcggacc tcgctcggaa caaataatgg aatttttttc
    13621 tatgttaggc aaacctccaa taccagaagc cgaaacaatg ccaaattctt ctttatctaa
    13681 ttcttcacta aatccagcat cctgcattgc ttctcttgct gctttaattc caagttgtat
    13741 gaaacggtca atttttttta cttctttgcc atcaacaacc tctaatggat caaaattttt
    13801 aacttcagct gcaatttgaa caggaaagtc cgtagcatca aaaagagtaa ttttatttac
    13861 tccgctttct ccattgcaaa ttgctttaaa tgaactttct ttatctaaac caagggcatt
    13921 gatcatacca atacctgtaa ctacaactct tttcaagaat aagctccttg caagaaaaaa
    13981 aattattttt ttagattgtc aatataattt acaacatctt caattttaat taatttttca
    14041 gcatcactat ctggaatttc tacttcaaat ttttcttcta aagccataat aagctctaca
    14101 acatctaaag aatcagcacc taaatcttca ataatttttg attccatttt aactgcatct
    14161 gcatcaatac ttaattgctc tactactact gcttttacat catcaaatgt tgccatttgt
    14221 tctccttcaa aaaattaaaa taaagcgtat tttactataa aaagcttaaa atatttatag
    14281 tttttcatta tacttgaaaa taaaatatta aaacataaag gaaaaatgat gcttttctct
    14341 aatttaatca aagaaaatca aaaaatttgg gatgcttatc tacatcatga ttttgttaaa
    14401 aaattagaag ataaaagcct aaagcaagaa aattttcttt tttatctcaa gcaagattat
    14461 atttatttgc ttaattacgc aaaatgctac gcaaggttag cacttaactc aaatactgca
    14521 aaagaacttc gttttgctat gaaatttcaa aattatatag ttgaaggaga aatggagctt
    14581 catcgtgcaa ttttatctct tggcattaat gcagatgaac tcgatataaa agatgaaagt
    14641 ttagtcaata tagcctattc gcgttatatg ttaagcgtag gtgaaaatgg agatttttta
    14701 gatatgttag ttgctcttag tgcttgcgct ataggctatg caaaaatagg tgctgaaatt
    14761 ataaatcgtt taaaaaatga aaatttaaaa gatcatcctt acaaggaatg gattttgacc
    14821 tatggaagtg aaaattttca aaatgaagct aaagaatttg aagattttgt taattcttat
    14881 acttcaagtg ttagtgcaca aaaattccaa aaactcagcg aaatttttca tactgtaaca
    14941 cgcttggaag tggctttttg ggagcattct ttaagaatgg aattaaatct ttaaacatgg
    15001 gctttttgcc catgttttta tgcaatttta cttgcatcaa taatattata atctaaacca
    15061 accgtttctt tagaaagtcc taatgcaagt cctactaatt gtgataaatg aataataggc
    15121 aatcttgctt tagaattagt ataatcttga aatctttctt gatagatatc aagctgcatt
    15181 tgacaaagtg gacaaggtgt tacaacacaa tcagcttgat tttcacttgc attattgaca
    15241 atttgactag acattttttt cacagatttt tctgcaggat aagaagcatg aaaaccacaa
    15301 caatcaaggc gtttttcaaa aggaactatt ttagccccta aaacttctac tacactttca
    15361 aaactttttg gattggttga actttctttt ttaccgaaag tatcttcagg tcttaaacta
    15421 tggcaaccat aaaataaagc tacttttaaa tttgaaagcg gctttttcac cttgcttttt
    15481 aaattatcca aatcctcata aagctcccac aaaagacttg taataggcgt tgaaccttga
    15541 tatttcattc caccttttgc taaaaaagta ttgatgcgtt cttttgcacc cttatcaaga
    15601 gtattttttg ctttagctaa agttagcata caagtactac aagttgtaag cattggcatt
    15661 ttcatctctt ctgctaaagc aatatttctt gcattagcta ccaaagtcgc aataggatca
    15721 acacactgcg cttgagaagc cccacaacaa ctccacccct taatttcatt caacttccaa
    15781 cccaaaatag gtgcaatagc ttcaagtgaa attttagatt cttttgcagc ttgagataaa
    15841 acacaacctg gaaaaaaagc gtattctttt tgcatatttt actccttaac agcagcttct
    15901 tgtgccgcct ttatcatttt aaccaaatct ttatgccatt ctatttcatc ctcgccaaaa
    15961 acatgcatag gattcatttt tcctgcacgc ataagtttaa aagctatatc tgttttaccc
    16021 atagaaccta taacaccctc agaacgcaaa gcaagataaa tttcattcaa gcgtcctgaa
    16081 ccttcaacta aatctttata aaaagcttca gcatgatcag accctaagcc ttcatttaaa
    16141 ccttttttaa tcgccatcac tcttaaattt gctatatcac ttactgaact tatacccttt
    16201 ggacaacgat cagcgcactc ttgacaatga acacaaagcc aaagtccatt cattacgctg
    16261 ggttttacat gcaacatagg atccttacct cgagagtccg ccgctgcacg ccaagcatga
    16321 gtaaaaacaa aaggttgcat ataatcgcta ctatctgctt ctaatttatt acactctgaa
    16381 gcacagctac cacataaaat acaatcccat tgcttgctaa tacgatcaaa ttcttcttga
    16441 ctttgtttac agtccttttc cgctgaaaat tcattttttg ccaccatggc aggacgaatt
    16501 tttcttaaat tttctataga aggctcccaa tccacaatta aatcagaaat tactctaaaa
    16561 tttccaagcg gagaaatgcg tatacttgaa ggattatcat attcttttaa caaatcttgc
    16621 attttagtat cacaagcaag ataagaatgc ccattcacac gaactgcaca agccccacaa
    16681 attgcagatt gacaagaggc ggtaaaattt aaagtaatat cttttgtttt tttgataaaa
    16741 agcaaaagag agagcagagt ttttccttgt atatccttat catcaatatc ataactttgt
    16801 tcatattttt ccttgccatt aaaacaatct atgataattt tcattgtact cttcttccat
    16861 caagtgaaaa ctcagttacc acgatatctt tataactaag ttttaattca tcattttcta
    16921 aatttacaat gctatgtttt aagaaatttt tatcatctcg ctttggataa tcttctctag
    16981 tatgagcccc acggctttca agtctatttc tagctgctaa acaagcacag cgagaaagta
    17041 aaatcaaatt accaagctct acataatctg taaaagcagt attcatcact tcattaggat
    17101 ttggaatacg aattttttca tatcttgctt gtatatcttc taaatttttt gctagaagat
    17161 cgagtttttc ttgagttcta aaaatcccca tattatccca attttgactt cccaactctt
    17221 ctcgcaattc atacatttct tgaccatttc cgccattatt tgtaatttct ttaaatctag
    17281 cctgccattt ttgagcaagt tcatgagttt ttgccccttt ttcaaaactt gcatctttgg
    17341 cataatttgt cgcaccaatg cctgctaaat gccccgttac aactgcatcg gctaaagaat
    17401 ttccccctag tctattagct ccatgtatag aaatacaaga agcttctcca cctacataaa
    17461 ttccagcaat tttagtactc atatcttcaa atttagccac ttcaatttca cccatagaat
    17521 aatgcgccgt tggacggata ggtacaggag tatctactaa atcaatattt tcaaaaagca
    17581 ttgcagtgtg acgaattttt ggtaaatctt ttaaaatttt ttcttttcct aagtggcgta
    17641 catcgcacaa aacataagct ccaagtccct cgccataacc tctaccttca cgaatttctg
    17701 tttctatagc acgcgcaacc acatctcgcg gtgcaagctc cattttttca tggtaatttt
    17761 tcataaaacg ctcaccacga ttatttaaaa gatatccccc ttcaccgcgc gccgcttctg
    17821 taataagagt tccaccattt gcaactcctg ttgggtgaaa ttgtatcatc tcaggatctt
    17881 caaaaccaag tcctgctcta agagcagctg ccacaccatc tcctgtggca ataaaaggag
    17941 ttgaagttct attataaaat atccttgtgt atccccctgt agcaatcacc aaagctttgc
    18001 ataacacagg ataaattcca ccgctttgta tatctcttaa aacgacaccc tcgcattttc
    18061 catccacaac acctatatcc aaaagttcat gatccattaa aaatttcaca ccactactaa
    18121 tagcatcatc caaacaagaa tgcattaaaa tatgacctgt tttatctgca gaatagttac
    18181 agcgtttctt agaagctcct cccattaaac gctgagctac tccaccttgc tcatttcttg
    18241 aaaacaaggt tcctataaaa tccatattaa aaatagcctt tccagctaat tcgcaaaatt
    18301 ttaaagccgc gtcttgatct accaaataag ctccgccttt aatagtatca taagcatgta
    18361 atttatagga atctccatta gaaaaatcag taactccatt aattccaccc tctgccatac
    18421 aagttgcgtt acgcgatggc atcatctttg tagctactac aacgcttaat tttggatttt
    18481 cttttctcac tgcggctgca gcacgcaaac ctgctccacc tgatccaatt accaaaacat
    18541 cgcaagaagg taaatttgca tctttatcca tcttagatga atcatctaaa gcataaactc
    18601 cacttgaact tgcaactaaa gctcctacac taatacaggc tgtttttata aaatctcttc
    18661 tagaaaattc acccatatca ttctccttat ttaaaaaaat taataataat ttttaatgta
    18721 agtcaatctt acataaccgc atgccaaaaa tccaaaaaca aactctcctt tcaatataaa
    18781 atggattaaa aacaaattta taatttagta aatataaaaa agcataagat aaataatcaa
    18841 agaagataga tgaatataat aaaataaata ttaaaaaatg tttgcaatat atcataatct
    18901 attccttgca aattaaacgg aatgattata ccttaaaaaa taacaaaaag ttaatattaa
    18961 ttaagataat atttatctta attaatatat agttaataaa attatcaaat cattaagcct
    19021 taaaaagctt aaattctcca ttcataaatt gcattctagc gcttaaatga tcaagataaa
    19081 aaacttcaaa ttttggattt tgcggagttt cataaagatt tacaagataa ggatattttt
    19141 taaacatcat ttttttaact tctaaatttg gttcaaaaac cgcattagct ctaagtctta
    19201 aaaaagtccc atcttttgca caagaacaaa attcaatacc attataattt tttatatgct
    19261 taaaaagtcc ttttgtattt gctgtgcaaa aataaatttt atctcccaca agcaatggac
    19321 tttgtatagg acgcactcta ggatttccac aagttcctaa agtggctaaa aatgctggtg
    19381 cattatcatc taaaaattgt gctatttctt ttaaatccat catttctcct tacatatata
    19441 aaccaccatt gatcttaagc acatcgcctg tcacataaga ggcataatca ctaagtaaaa
    19501 acgctacaca attagccact tcttcaggtt ctgcaaagcg ttttaaaggg atattgtctt
    19561 gataggtttg tttgatttca tcacttaaaa cttcagtcat atcgcttttt atgaaacctg
    19621 gagtcacaca gttaaagcgt aaatttctac ttgctccttc tttagcaaaa gatttagtca
    19681 tagctatcat tccaccttta ctagcagaat aatttacttg tccagcatta cccatttctc
    19741 cgacaataga agcgatattt acaacagcac caaagcgttt tttactcatg gtttttaaag
    19801 cttctctaca acctaaaaaa gctgagctta aattcgtatc cacaacgcca ctaaagtcct
    19861 ctaatttcat tcttaaagca agtttatcat ttgtaacgcc tgcattattt acaagataac
    19921 ttaattctcc atcactctca actatagttt ttacaccgtt ttcaaactca tcttctttgc
    19981 ttgcatcaaa tttaatcaca gcagcaacgc caccacttgc aataatttca tcttttaaag
    20041 catctgcaag ttcaggtttt gaacgataat tgatccaaac tttaagccca aaacctgcca
    20101 aagtttttgc gatagaagca cctattccct tacttgctcc agtaattaaa acattttttc
    20161 cactaaattt cattatctat ccttaataag tttaatttta aaaattgcaa tcttaacaaa
    20221 tttcttataa aaaaggcaaa caaactaaaa taaagcctca ttcatttctt ttggaatttc
    20281 taagtctaaa attttaagca cgcttgcagc gatattgcta agccccatat tatctttaat
    20341 ctttgaaact ccctttgctt gcacaaaaac aaaaacatca aaagtggtgt gattggtaag
    20401 caaatttcct ttttcatctt gcatagcctc gcaatttcca tgatcacttg taatgataaa
    20461 agcataatca tgcttttttg cacattctat aatctcgccc aaacaagtat ccaccgcttc
    20521 gacagccttt atagcagcat taaaatcacc tgtatgtcca accatatctc catttgcaaa
    20581 atttaccact ataaaatcct cacccttttc tatgcctttt ttcactgcat cacacacttc
    20641 aaaagcactc atttggggtt ttttatcata agtttttacc ttggggcttg ggattaaaac
    20701 ccttgtttca ttttctaaaa gctcttcttt tccgccatta aaaaagaaag ttacatgggc
    20761 gtatttttcg gtttctgcgg tatgaagctg actaagccct gctttagaaa tcacttgcgc
    20821 taaagtattt tcaatttttt ctttttcaaa aagcacaggg agtttaaatt tatcatcata
    20881 aacactcata gtaagtaaat tttcaaagat tttttcgcgt tcaaactctt taaaatcctt
    20941 agaatttaac acttcaataa gttgtttcat tctatcattt ctaaaattga taaagataat
    21001 gccatcttct tctctcatgc ccttgtaatt ctcattttga gctgctttaa taaactcatc
    21061 agtaacattt tcatcgtaag atttttgtag gtattctaat aaatttggca ctttataagc
    21121 cttacctaac aagcactcat aatactcttt taccctatcc caacgcttat ctctatccat
    21181 agcataaaaa cgcccacaaa gcgtagcaaa atgcacgcct aagttttcac aaaattcttt
    21241 taaatctttt atgaaattta agccactttt tggacttgca tcacgcccat cagtgattgc
    21301 gtgagcaaaa acttcattgc catttttcgc acaaatttca agcatggctt taaaatgcgt
    21361 atccatagaa tgcaccccgc catcactata aagccctata atatgcactc ttttacattt
    21421 tgctaaaagt ttttgcaaat tctcattttt ttcaagttct ttgttttcaa tggctttatt
    21481 aatacgcact aaattttgat aaataatacg cccacctcct atacacatat gccctacttc
    21541 actatttccc atctgccctt ctggcaaacc tacagctaaa ccactcgttt ttagtaaaga
    21601 atttgggact tccttaaaaa gcttttcata acttggtttt ttagctgctt caaaagcatt
    21661 aaacttacta ttcttattat accctattcc atctgtaata attaaaacgc atttttgctt
    21721 catttttctc tcttttataa gaattttttt ggttagattt tactaaaatt aaacttttaa
    21781 aaaccaaaaa gaaggctagg ttttgtatta tctttcagat ttaagtcatt atgctttttt
    21841 tacttatatt agtgtgcgtg caggatttgc attttttatc gctttatgtt tgtctttatt
    21901 tttaatgcct aaatttatta cttgggcaaa agctaaaaat gctagtcaac ctatttacga
    21961 atacgcccca gaaactcata aaaccaaatg ccatactcca accatgggtg ggcttatttt
    22021 catcagttct gcagtaatcg caagtttatt ttgtatcaaa tttgataata tttttgctat
    22081 aagtgcttta ctttgtttga tacttttttg tttgatagga ctcatagatg atttaggcaa
    22141 agttctaaaa aaagataatc attcaggact tagtccaaga atgaagcttt tagcacaaat
    22201 catcgctgga cttatctgca tcttaccttt atattttagt tcagagctta gcacggaact
    22261 ttttatacct ttttataaac accctctttt tgatatggaa atttttgcca ttgctttttg
    22321 gattttggtt ttaatttcta gctctaatgc tgtaaattta accgatggac ttgatggctt
    22381 agctacagtt ccaagcattt tttctttatc tactttaggg atattcttat atttgagtgg
    22441 aaatttaaat tatagtgaat atctactttt gccaaaaatt caaggacttg gtgaagtagt
    22501 gattatttgt gcagcgctaa ttggtgcttt aatgggattt ttatggtaca actgttatcc
    22561 tgcacaagtt tttatgggag atagtggaag tttagcttta ggtggcttta taggattttt
    22621 agccgttatt agcaaaaatg aaattttact tttactcata ggttttgttt ttgttcttga
    22681 aactgtttct gtaattttac aagttggaag ttttaaaatt tttaataaaa gagtatttaa
    22741 aatggcgcct attcatcatc attttgaaaa agttggctgg atggaaaata aaattatagt
    22801 gcgtttttgg atgatagcct tactttcaaa tttgcttgca cttgcatcaa taaagctaag
    22861 ataatgaaaa tttcactttt tggatacgga aaaaccacac gtgctattgc tgaaaattta
    22921 gtagataaat ttggaccttt tgatatttat gatgatcatt ttacagaaac aaaaaaagat
    22981 acactaggaa atttactttt aaatcctaat gattttgatg ataatttaag cgacattgaa
    23041 attcctagtc caggttttcc accaaagcac aaactcattc aagaagcaaa aaatttacaa
    23101 agtgaatatg acttttttta cgatgtcatg ccaaaatctg tttggataag tggaactaat
    23161 ggaaaaacaa ccactactca aatggctaca catttattat cacatattgg tgctgttatg
    23221 ggtggaaatg ttggaactcc tttagcagag cttaatcctt atgaaaaact ttggatactt
    23281 gaaacttcat cttttaccct acactacact cataaagcta aacctgaaat ttatgcactt
    23341 ttacccatca gtcctgatca tctttcttgg catggaagtt ttgataatta tgttcaagat
    23401 aagctaagcg ttttaaaaag aatgaatgaa tgtgatgtaa caatactgcc taaaatttat
    23461 gcaaatactc caacaaaagc tcataaaata agctatgaag atgaaaaaga tctagctgtt
    23521 aaatttggca ttgatacgga aaaaatttcc tttaaaagtc cttttttact cgatgctatc
    23581 atggctttag ctatagaaaa aattctactt gatactttaa gctatgagcc tttaaatagc
    23641 tttgtaatgg aaaaaaataa actcgaagag attaaagaca gtcaaaatag gctttgggta
    23701 aatgacacta aagccacaaa tgaaagtgca gtaatggctg cgcttagtcg ctataaagat
    23761 aaaaaaatcc atcttatcat agggggagat gataagggtg tagatcttag caatttattt
    23821 gattttatga aaggatttga tatagaactc tatgctatag gtattagtac cgaaaaaatg
    23881 cttgattatg caaaaaaagc gaatttgaaa gcctataaat gtgaagtttt atctaaagct
    23941 gtaaatgaaa tttcaaatca cttaagagtc aatgaagtag ctcttttaag tcccgcttgt
    24001 gcaagtttag atcagttcaa ctcttacgca gagcgtggaa aagtctttaa agaatgtgtg
    24061 aataaaattt aatttatttt acttttcata gaaaatttta aattttatcc ttctagtatt
    24121 ttcaaacccc taaaaacacc ctattctctc taaaaaccct aaccagcagc aaactctttt
    24181 ttaaacacga ttctaagtat catctaaaac aacaataaaa ataaacatag gatttatata
    24241 taaagtaagt aatgaagaca
//
LOCUS       DAQSLY010000011        23950 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.011, whole genome shotgun sequence.
ACCESSION   DAQSLY010000011 DAQSLY010000000
VERSION     DAQSLY010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.011"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(11..889)
                     /gene="rfbA"
                     /locus_tag="R2H98_000342"
     CDS             complement(11..889)
                     /gene="rfbA"
                     /locus_tag="R2H98_000342"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HEE9023263.1"
                     /translation="MKGIILAGGSGTRLYPSTLTLCKQLLPIYDKPMIYYPMSVLMLA
                     KIKEVLIISTPKDIDRFKELFKDGSFLGMQIQYKIQERPEGLAQGLILAQDFIQNDDI
                     ALILGDNIFYGQGFSDILENAKDDLKKGFASIFSYHVKDPERFGVVEMDQNGNVLSLE
                     EKPKNPKSNYVATGLYFYNNDAIDIAKNIKPSARGELEITDVNIEYLRLNKLKSQHLG
                     RGFAWIDTGTHDSLIEASSFVQTIELRQGYKIACLEEIAYNNNWIDNETLEKRALLLS
                     KSNYGQYLYKILSQGK"
     gene            complement(900..1601)
                     /locus_tag="R2H98_000343"
     CDS             complement(900..1601)
                     /locus_tag="R2H98_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEE9023264.1"
                     /translation="MNISIVILTFNSQKYLQEVLQSVNFANEIILIDSGSTDDSLIIA
                     KTFKNVKIFHQDWLGFGKQKQFGVEKANNDWIFVLDSDEVFTEELKEEVLQIIKNPSF
                     KAYKVARLNFFFGETITKMGLYPDYNIRLFHKKYAKFNEREVHESIICQEKIGKLKHH
                     FLHYAYENIEQFIDKQNKYSSLNPKKNNLLKALINPYWTFFKLYFVKLGFLEGKRGFI
                     IAKLYAQYTFWKYIK"
     gene            complement(1598..2476)
                     /gene="htrB"
                     /locus_tag="R2H98_000344"
     CDS             complement(1598..2476)
                     /gene="htrB"
                     /locus_tag="R2H98_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEE9023265.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPDCILHFLALIVARIAFHLNKK
                     HRKIIDTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEEGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNQGIYS"
     gene            complement(2466..3494)
                     /gene="waaC"
                     /locus_tag="R2H98_000345"
     CDS             complement(2466..3494)
                     /gene="waaC"
                     /locus_tag="R2H98_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEE9023266.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKIMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIINTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3561..4355
                     /locus_tag="R2H98_000346"
     CDS             3561..4355
                     /locus_tag="R2H98_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEE9023267.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENELEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVQS"
     gene            4414..5400
                     /gene="galE"
                     /locus_tag="R2H98_000347"
     CDS             4414..5400
                     /gene="galE"
                     /locus_tag="R2H98_000347"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEE9023268.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLVPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            5394..7088
                     /gene="pglK"
                     /locus_tag="R2H98_000348"
     CDS             5394..7088
                     /gene="pglK"
                     /locus_tag="R2H98_000348"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEE9023269.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQDLRQE
                     EENLGEEKLSFNQELKIYNLGFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            7085..8164
                     /gene="pglH"
                     /locus_tag="R2H98_000349"
     CDS             7085..8164
                     /gene="pglH"
                     /locus_tag="R2H98_000349"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEE9023270.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLVNVLCKEHEVSIIKFHAGESF
                     YKLENKVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEIPFDSSFEKENLVLFIGRLDHNKNPAMFLKAIAHLDKNLQENYKFV
                     IAGDGELRQELEYKVKSLGIKVDFLGRVENVKTLYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLIGCDDEIALAKKLELVLNNENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            8157..9086
                     /gene="pglI"
                     /locus_tag="R2H98_000350"
     CDS             8157..9086
                     /gene="pglI"
                     /locus_tag="R2H98_000350"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEE9023271.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMVKFSGEFFSVF
                     KKSLLENQRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAHR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            9074..10171
                     /gene="pglJ"
                     /locus_tag="R2H98_000351"
     CDS             9074..10171
                     /gene="pglJ"
                     /locus_tag="R2H98_000351"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEE9023272.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALI
                     ARMFGNKTRLVINECTTPSVMYVKNNFNSLANKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSINPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTGLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            10175..12316
                     /gene="pglB"
                     /locus_tag="R2H98_000352"
     CDS             10175..12316
                     /gene="pglB"
                     /locus_tag="R2H98_000352"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEE9023273.1"
                     /translation="MLKKEYLKNPYLVLFAMIILAYVFSVLCRFYWIWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            12326..13456
                     /gene="pglA"
                     /locus_tag="R2H98_000353"
     CDS             12326..13456
                     /gene="pglA"
                     /locus_tag="R2H98_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEE9023274.1"
                     /translation="MRIGFLSHAGASIYHFRTPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYELSRASLNPFVVLKNFFYLAKVLKNLNLDLIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFFINNLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKESKICVIKSVGINLKKFFPIYVESKKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            13449..14051
                     /gene="pglC"
                     /locus_tag="R2H98_000354"
     CDS             13449..14051
                     /gene="pglC"
                     /locus_tag="R2H98_000354"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEE9023275.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            14038..14628
                     /gene="pglD"
                     /locus_tag="R2H98_000355"
     CDS             14038..14628
                     /gene="pglD"
                     /locus_tag="R2H98_000355"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEE9023276.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSASIEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGTNSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            14726..15886
                     /gene="pglE"
                     /locus_tag="R2H98_000356"
     CDS             14726..15886
                     /gene="pglE"
                     /locus_tag="R2H98_000356"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEE9023277.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATVALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            15888..17660
                     /gene="pglF"
                     /locus_tag="R2H98_000357"
     CDS             15888..17660
                     /gene="pglF"
                     /locus_tag="R2H98_000357"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEE9023278.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPFRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            17660..18553
                     /locus_tag="R2H98_000358"
     CDS             17660..18553
                     /locus_tag="R2H98_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEE9023279.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            18666..19058
                     /locus_tag="R2H98_000359"
     CDS             18666..19058
                     /locus_tag="R2H98_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEE9023280.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAD"
     gene            19081..19926
                     /locus_tag="R2H98_000360"
     CDS             19081..19926
                     /locus_tag="R2H98_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEE9023281.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            19930..21867
                     /gene="ftsH"
                     /locus_tag="R2H98_000361"
     CDS             19930..21867
                     /gene="ftsH"
                     /locus_tag="R2H98_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEE9023282.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            21864..22481
                     /locus_tag="R2H98_000362"
     CDS             21864..22481
                     /locus_tag="R2H98_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEE9023283.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            22491..23219
                     /gene="pssA"
                     /locus_tag="R2H98_000363"
     CDS             22491..23219
                     /gene="pssA"
                     /locus_tag="R2H98_000363"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEE9023284.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(23210..23950)
                     /locus_tag="R2H98_000364"
     CDS             complement(23210..23950)
                     /locus_tag="R2H98_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEE9023285.1"
                     /translation="MKFHSFQNFYEDFKSHKLIFNHEHQSIFKKNTSQQITLLHPTRI
                     RRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKH
                     FKLLNSALKELSYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLEAKGLDANPFVV
                     QKLQSSNHSIKNLLIEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTFKQFSL
                     AGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         8062 a         2848 c         4365 g         8675 t
ORIGIN      
        1 aaaatataca ttattttcct tgactaagta ttttatataa atattgacca taattacttt
       61 ttgaaagtaa caatgctctt ttttctaggg tttcattatc tatccagttg ttattgtagg
      121 ctatttcttc taagcaggca atcttataac cctgccttaa ttctatggtt tgcacaaacg
      181 aactagcttc tataagacta tcgtgagttc ctgtgtcaat ccaagcaaaa cctcttccta
      241 aatgttgtga ttttagctta tttaacctta aatattctat atttacatct gttatttcaa
      301 gttctcctct tgcacttggt tttatatttt ttgcaatatc tatagcgtca ttattataaa
      361 aatataaacc agttgccaca tagttgcttt ttggattttt gggtttttct tctaggctta
      421 aaacatttcc attttgatcc atttctacca ctccaaatct ttctggatct tttacatgat
      481 aagaaaaaat actagcaaac ccttttttta agtcatcttt tgcattttcc aaaatatcac
      541 taaagccttg tccgtaaaaa atattatctc ctaaaattaa tgcaatatca tcattttgaa
      601 taaaatcttg cgccaaaata agtccttgcg ctaaaccttc tggacgctct tgaattttat
      661 actgaatttg cattccaaga aaagaaccat ctttgaatag ctctttaaat ctatcaatat
      721 cttttggagt agaaataatc aaaacttctt taatttttgc aagcattaaa acagacatag
      781 gataataaat cattggttta tcgtatatag gtaaaagttg cttgcataaa gttaatgtgc
      841 taggataaag cctagttcca ctacctccag ctaaaataat gcctttcatt gttgcactcc
      901 tatttaatat atttccaaaa agtatattgt gcataaagct ttgctatgat aaaacctctt
      961 ttgccttcta aaaaacctaa ttttacaaaa taaagtttaa aaaaagtcca ataaggattt
     1021 attaaagctt taagaaggtt atttttttta ggatttagac ttgagtattt gttttgttta
     1081 tctataaatt gctcgatatt ttcataagca taatgtaaaa aatgatgttt taatttccct
     1141 attttttctt gacagattat gctttcgtga acttctcttt cattaaattt ggcatatttt
     1201 ttatgaaata gtcttatgtt ataatcagga tatagcccca tttttgttat tgtttctcca
     1261 aagaaaaaat ttaatcttgc tactttgtat gctttaaatg atggattttt aattatttgc
     1321 aatacttcct cttttaattc ttcagtaaaa acttcatcac tatctaaaac aaatatccaa
     1381 tcattatttg ctttttcaac tccaaattgt ttttgctttc caaaaccaag ccaatcttga
     1441 tggaaaattt tcacgttttt aaaagttttt gctattatta aactatcatc tgtgcttccg
     1501 ctatctatta aaataatttc attggcaaaa ttaacacttt gtaatacttc ttgaagatat
     1561 ttttggctat taaaagttag tattactatt gaaatattca tgagtatatt ccttgattat
     1621 aactagcaaa gcgtctatga aaaaaaaagt attcccaagg tcttttttta atcatttctt
     1681 cgcaactttg tgcttgataa agtgtcagtt cttctaaact tgcattttga gaatcttttg
     1741 ctttaaaaaa ctctatgcaa aatttaccct cttctttata ggcataaaca gggatgatca
     1801 aagcattgct tctttgtgcg ataaggcttg ctcccatttg ataattcact tctttgttaa
     1861 aaaattttaa tcttacgctt tcgttttcta cgcagtcttg atcagttaaa attcccaaag
     1921 ttctcccttt ttttagagcg cttagcattt gtcttatgcc gccttttttg tcgataagtt
     1981 ctatgtcaaa ttgggtgcga ctttggctta aaatttcata cataatttca ctttttaact
     2041 ttttccctac tatagaaatt gcaccatatt tagctgcata agcaaggctt aaaatttccc
     2101 agtttccata gtgtgcagtt gtgaagataa taggacgctt taaagctaga gcatctataa
     2161 gaaaattttc attaatgaaa tttactttat tgagaatttt ttctttagtg gtgttttgat
     2221 tttgcaaaca atcaatccca aattgagcaa aattttcata aatttttaaa gacaatttat
     2281 cgcgttcttt ttgagtgtat tgaggaaaac agatttgcaa atttgtatcg atgattttgc
     2341 ggtgtttttt gttaagatga aaagcgattc ttgctacaat caaagctaaa aaatgcaaga
     2401 tacaatcagg cataaaagta acaaaaaatt tcaaaatata ataaagacta agatatattc
     2461 tatcgctatt tttcattaag taagcctttg gcaagtttga agatatcttc ttcttctata
     2521 cgcgtgatac aaaaatcact tttatcgata tgcttggcat tttgaatttt tttacctgta
     2581 ttaatgattt tattgatatg agtttgaaaa gcattgcggt agcttggtgt tgcaccaaaa
     2641 atcgtaatag atgctttatt taaagcaaaa gctaaatgtg ttggaccgct atcatttcct
     2701 atgataagat ccattatttt tgtaaaagcc attagctctt caagattaaa ttttggcgct
     2761 aattctatat gtgtttcatc aataccacta agatttaaaa cctctttagc aaattcgtat
     2821 tcttttacat ttccccaagc gagccaaatt tttgtttgtt gaaattcatt gattaaaagt
     2881 ttgcaaagta tagcaagttt ggttttagga tagattttat tttctacact tgagcccaca
     2941 tgtatgagta tgtttttttc gtttttgtcg agtttgagtt tattatttaa gagttgtttt
     3001 aaattttcat ctacgctaaa aatatcttgt ttaaaggcta aatttttgac attaaaatca
     3061 gtatttaaca taaaggaggt aagacttaag tatcttacaa atacattttc attgtaatct
     3121 aactcaagtt tttggttgta gaaattatga gcaaaacttt ctttaagact atttttatca
     3181 aaaccaaaat tatttctact taaaattcga cttacaatag cagattttat gagcccttgt
     3241 agatctatta ctgcattata gttgtttttt cttgctttaa gaagaatttt taggcttttt
     3301 aaaatttttt tgtcttttaa gggcagggca tagagtttgt ctattaaagg atggttttta
     3361 agtatgcctt caaatttttc atctacaaac caatgaattt ctatatcttt tttaaaattt
     3421 ttgataaatt gcaaaaccac ggcactttgt ataatatcac caagtgctga caaacgaaca
     3481 attgctattt tcattaaaag cctaatattt taaaattttt tgctatgatt ttagcgaaat
     3541 tatttaaaaa aaggttaaaa atggcaaaaa atgaaggtta tatttgtgtt tttgattgtg
     3601 agagtgtgcc agatgttgag cttatccgca aaactttggg ttttgaagga agtgatttag
     3661 aggtaagttt aaaagcactt cagtggcaaa aagaacaaag tgggagtgag tttttgcctt
     3721 tgccttatca taaaattatc agtatttgtg cggttttaag tgataatttt ggaaaattta
     3781 tcaaagtaaa taaaattgat gggcaaaatg aaaaagaaat gattgagaat tttttcaatt
     3841 ttatagaaaa ttatgagcca aaattagtca gctttaatgg taaaaatttc gatatgcctg
     3901 ttcttgtttt aagggcttta aaatacaatt taaaagcagc aacttattta gatactcaaa
     3961 gcgataaatg gaataattat aaaacaagat tttcagaatt aaaacattgt gatttattag
     4021 aatccttagg atctaatggg cgtggaataa agcttgatac actttgctct atggtgggtt
     4081 tgccaggaaa atatgatgtg catggcgatg aggtgatgaa acttttttat gaaaatgaac
     4141 ttgaaaaaat tcacgaatat tgtgaaagtg atgttttaaa cacctatatg ctttttttaa
     4201 aatatgaact tattaaagct aatgttagtg aagaagatta tgttgatttt ctttcttata
     4261 tgagagattt tttgcgtgaa aaaaaatcag atcgttccta tacagaagtt tttgcaaaag
     4321 cttgtgagag tgaaatttca aaagttcaat cttaagtatt taagaaaata tattaaaatt
     4381 tatttttgac attttttaaa aaaaggaatg atgatgaaaa ttcttattag cggtggtgca
     4441 ggttatatag gttctcatac tttaagacaa tttttaaaaa cagatcatga aatttgtgtt
     4501 ttagataatc tttctaaggg ttctaaaatc gcaatagaag atttgcaaaa aataagagct
     4561 tttaaatttt tcgaacaaga tttaagtgat tttcaaggcg taaaagcatt gtttgagaga
     4621 gaaaaatttg acgctattgt gcattttgca gcaagcattg aagtttttga aagtatgcaa
     4681 aatcctttaa aatattatat gaacaacact gttaatacga caaatctcat cgaaacttgt
     4741 ttgcaaactg gagtaaataa atttatattt tcttcaacgg cagccactta tggcgaacca
     4801 caaactcctg ttgtgagcga aacaagccct ttggtaccta ttaatcctta tgggcgtagt
     4861 aagcttatga gtgaagaggt tttgcgtgat gcaagtatgg caaatcctga atttaagcat
     4921 tgtattttaa gatattttaa tgttgcaggt gcttgtatgg attatacttt aggacaacgc
     4981 tatccaaaag caacattact cataaaagtt gcagctgaat gtgccgcagg aaaacgtgat
     5041 aaacttttca tatttggcga tgattatgat acaaaagatg gtacttgcat aagagatttt
     5101 atccatgtag atgatatttc aagtgcgcat ttagcggctt tggattattt acaagagaat
     5161 gaaagtaatg tttttaatgt aggttatggg catggtttta gtgtcaaaga agtgattgaa
     5221 gcgatgaaaa aagttagtgg agtggatttt aaagtagaac ttgccccacg ccgtgcaggt
     5281 gatcctagtg tgttgatttc tgatgcaagt aaaatcagaa atcttacttc ttggcagcct
     5341 aaatatgatg atttagagct tatttgcaaa tctgcttttg attgggaaaa acagtgttaa
     5401 aaaaactttt ttttatttta agtaaggaag ataaaaattt tttatttttt ttgcttgttt
     5461 tttcagtatt tgtttctttt atagaaactt ttgcgatttc tttggtaatg ccttttatca
     5521 ctttggccag tgatttttct tattttgatc gtaataaata tttaatcagc ttaaaagaat
     5581 atcttaatat ccctgttttt gaaatcattg tttattttgg ggtggggctt attgtttttt
     5641 atgtgtttag agctttgtta aatgcgtatt attttcatct tttagcaaga ttttctaaag
     5701 ggcgttatca tgtgatcgct tataaggttt tttctaaatt tttaaatatt aattatgaaa
     5761 aatttactca aaaaaatcaa tctgaaattt taaagtccat tacaggggaa gtttataatc
     5821 taagcactat gatttcatca tttttgcttt tgatgagtga aatttttgta gtgcttttgc
     5881 tttatgcttt aatgcttttg attaattata aaatcacttt atttttaagt atttttatgg
     5941 tgttaaatgc ctttatttta gtgaaaattt taagccctat cattaaaaaa gcaggagtaa
     6001 gacgcgaaga agcgatgaaa aatttctttg aaattttaaa tacaaattta aataatttca
     6061 aatttattaa gcttaaaacc aaagaagatg gagtattaag tctttttaaa gcgcaaagtg
     6121 aagctttttc taaagcaaat attaccaacg aaagtgtagc tgcggtgcct agaatttatc
     6181 ttgaaggaat aggtttttgt gtacttgttt ttatcgtggt atttttggtg ttgaaaaatg
     6241 aaagtgatat ttcaggtatt ttatccacga tttctatttt tgttttagca ctttatcgct
     6301 taatgccaag tgcaaatcgt attattacaa gttatcatga tttgctttat tatcattctt
     6361 ctttggatat tatttatcaa gatttaagac aagaagaaga aaatttgggc gaggaaaaat
     6421 taagctttaa tcaagagctt aaaatttaca accttggctt tggttatgag ggaaaaaaat
     6481 atttatttaa aaatcttaac ttaaacatta aaaaaggcga aaaaatcgct tttatagggg
     6541 agagtggttg cggaaaaagt accttagtag atcttatcat aggactttta aaaccaaaag
     6601 aagggcaaat tttaattgat gagcaagaat taaatgcaaa taatacaaaa aattatcgcc
     6661 aaaaaatagg ctatatcccg caaaatatct atctttttaa tgacagtata gctaaaaata
     6721 tcacttttgg agatgcggtt gatgaagaaa aacttaatag ggttatcaaa caagcaaatt
     6781 tagagcattt tataaaaaat ttatctcaag gagtgcaaac aaaagtgggt gatgggggga
     6841 gtaatttaag cgggggacaa aaacaacgca tagctatagc aagagctttg tatttagagc
     6901 ctgaaatttt agtgcttgat gaagcaactt ctgctcttga tactcaaagt gaagcaaaaa
     6961 tcatggatga aatttataaa atttctaaag ataaaaccat gattattatc gcacatcgcc
     7021 tttctacgat aacgcaatgt gataaggttt atcgtttaga acacggtaag cttaaagagg
     7081 agaaatgatg aaaataagct ttattatcgc aactttaaat tcaggaggcg ctgagcgtgt
     7141 tttagtaacc ttagttaatg tactttgtaa agagcatgaa gtaagtatta ttaaatttca
     7201 tgcaggagaa tctttttata agcttgaaaa taaagttaaa gttacaagtt tagaacaatt
     7261 tagatttgat acgctttatc ataaaatcgc aagtcgtttt aagaaatttt ttgctttaag
     7321 aaaggctttg aaagaaagta aggctgatgt ttttatttct tttttggata cgactaatat
     7381 tgcttgtatt gctgcgaaaa tagggtttaa aactccactc attataagtg agcatagcaa
     7441 tgaagcgtat ttaaaaccta aaatttggcg ttttttaaga agggtaagct atcctttttg
     7501 tgatgcttta agtgtgcttg gaagcagtga taaggtgtat tatgaaagat ttgtaaaaag
     7561 ggttaggctt ttattaaacc cttgtcattt tagcgatgaa attccttttg attctagttt
     7621 tgaaaaggaa aatttggttc tttttatagg gcgtttagat cacaacaaaa accctgcaat
     7681 gtttttaaaa gctatagcgc atttggataa aaatttgcaa gaaaattata aatttgttat
     7741 agcaggagat ggagagttaa ggcaagaact tgaatacaag gtaaaatctt taggaataaa
     7801 agttgatttt ttaggacgag ttgaaaatgt caagactctt tatgaaaaag caaaagtgct
     7861 ttgtctttgt tcttttgtag agggtttgcc aacggtttta attgaaagtt tgtattttga
     7921 ggtttgtaga atttcaagtt cttattataa tggtgctaag gatttaatca aagataatca
     7981 tgatgggctt ttgataggtt gtgatgatga aatagcactt gctaaaaaac ttgaacttgt
     8041 tttaaataat gaaaatttta gaaaagaact tgtaaataat gccaaacaaa ggtgtaaaga
     8101 ctttgaaatt tctcatatca aagaagaatg gcttaagctt atagctgagg ttaaaaatgc
     8161 ctaaactttc tgttatagta ccaactttta atcgtcaagt tttactagaa aaggctatta
     8221 aaagcataca aaatcaagat tttaaagatt tagaaattat tgtaagcgat gataattcta
     8281 gcgatgatac taaaagtgtg gtgcaaaatt tacaaaaaga tgatgatcgc attaagtatt
     8341 ttttaaatca aaattacaaa caaggcccaa atggcaataa aaataatggc ttagatcaag
     8401 caagtggcga gtttgtaact tttttagatg atgatgatga gcttttatct ggggctttaa
     8461 gtaccttgat gcaaaaagca aatgagggtt atgctcatgt ttttggaaat tgtttgatag
     8521 aaaaagaagg aaatttaagc aaggaattta gcggtaaggg cttggaaaaa gatagtgaaa
     8581 tttctaaaaa agatttttta atggttaaat ttagcggaga gtttttttct gtttttaaaa
     8641 aatctctact tgaaaaccag cgttttaatg aagaatttta tggcaatgaa gccacgcttt
     8701 gggtaaattt atacaaggaa aaaagttttt atatccataa ggcttttagg atttatagga
     8761 tttttaggca agatagcgtg actttagggg cgagtaaaaa tgctcatagg gtatatttgg
     8821 gatatttaga gcttgctaaa attttagaaa atgaacttag aatgagtaag gataaagatt
     8881 ataaaaaaac ttgtgcgagt tattataaaa tggcagctta ttatgcaaaa cttgcaaaaa
     8941 attataaagc tctttataag tgtttgttta aaagcttgag tataaaaatc aacgctcctg
     9001 ctttgatatt actcatttta agtataattc caaataatat gattgaaaaa ttatcaaaaa
     9061 ttcgggtggc tttatgcaaa aattaggcat ttttatttat tctttaggaa gtggtggtgc
     9121 tgaaagagtt gtggcgactt tattgcctat tttaagtttg aaatttgaag tgcatttgat
     9181 cttgatgaat gataaaattt cttatgaaat tccagagtgt caaattcatt ttttagaatg
     9241 ttcaaaacct agtgaaaatc ctattttgaa atttttaaaa ctaccttttt tggctttaaa
     9301 atataaaaaa ctttgcagaa atttgggcat tgatacagaa tttgtttttt taaatcgacc
     9361 taattatata gccttaatag caagaatgtt tggaaacaaa actcgccttg tgatcaatga
     9421 atgcactacg ccaagtgtga tgtatgtaaa aaataatttt aattctttgg caaataaatt
     9481 tttaatttct ttgctttacc caaaagctga tttaatcttg cctaattcta aaggaaattt
     9541 agaagattta gtgcaaaatt ttagtataaa tccaaaaaaa tgtgaaattt tatacaatgc
     9601 catcgattta gaaaacatag ggcaaaaagc ccttgaagac atagctttaa aagataaatt
     9661 tattttaagt gtaggcaggc ttgataaagg taaaaatcat gctttattaa ttcgtgctta
     9721 tgcgagattg aaaacaggtt taaagcttgt gattttaggt gaaggtgtgc ttaaagatga
     9781 gcttttagct ttgattaaag aattaaattt ggaagaaaag gttttgcttt taggatttga
     9841 taataatcct tataaataca tggctaaatg cgaatttttt gcttttgctt ctgtgtttga
     9901 aggtttttca aatgttttaa tcgaaagttt ggcttgttct tgtgcggtgg tttgcactga
     9961 tcataaaagt ggtgcaagag agctttttgg cgatgatgaa tttggacttt tagtagaagt
    10021 agataatgaa aactctatgt ttcagggttt aaaaactatg cttgaagacg ataaattaag
    10081 aaaagcgtat aaaaacaaag ctaaaactag ggctaaagcc tttgataaag taaaaattgc
    10141 acgcgatgct ttgaaatatt tattaggata aaagatgttg aaaaaagagt atttaaaaaa
    10201 cccttattta gttttgtttg cgatgattat attagcttat gtttttagtg tattgtgtag
    10261 attttactgg atttggtggg caagtgagtt taatgagtat tttttcaata atcaattaat
    10321 gatcatttca aacgatggct atgcctttgc tgagggcgca agagatatga tagcaggttt
    10381 tcatcagcct aatgatttga gttattatgg atcttcttta tctacgctta cttattggct
    10441 ttataaaatc acaccttttt cttttgaaag tatcatttta tatatgagta cttttttatc
    10501 ttctttggtg gtgattccta ttattttact agctaatgaa tacaaacgtc ctttaatggg
    10561 ctttgtagct gctcttttag caagtgtagc aaacagttat tataatcgca ctatgagtgg
    10621 gtattatgat acggatatgc tggtaattgt tttacctatg tttattttat tttttatggt
    10681 aagaatgatt ttaaaaaaag actttttttc attgattgcc ttgccattat ttatagggat
    10741 ttatctttgg tggtatcctt caagttatac tttaaatgta gctttaattg gacttttttt
    10801 aatttataca cttatttttc atagaaaaga aaagattttt tatatagctg tgattttgtc
    10861 ttctcttact ctttcaaata tagcatggtt ttatcaaagt gccattatag taatactttt
    10921 tgctttattt gctttagagc aaaaacgctt aaattttatg attataggaa ttttaggtag
    10981 tgcaactttg atatttttga ttttaagcgg tggggttgat cccatacttt atcagcttaa
    11041 attttatatt tttagaagtg atgaaagtgc gaatttaaca cagggcttta tgtattttaa
    11101 tgttaatcaa accatacaag aagttgaaaa tgtagatttt agcgaattta tgcgaagaat
    11161 tagtggtagt gaaattgttt tcttgttttc tttgtttggt tttgtatggc ttttgagaaa
    11221 acataaaagt atgattatgg ctttacctat attggtgctt gggtttttag ccttaaaagg
    11281 ggggcttaga tttaccattt attctgtacc tgtaatggct ttaggatttg gttttttgtt
    11341 gagcgagttt aaggctatat tggttaaaaa atatagccaa ttaacttcaa atgtttgtat
    11401 tgtttttgca actattttga ctttagctcc agtatttatc catatttaca actataaagc
    11461 gccaacagtt ttttctcaaa atgaagcatc attattaaat caattaaaaa atatagccaa
    11521 tagagaagat tatgtggtaa cttggtggga ttatggttat cctgtgcgtt attatagcga
    11581 tgtgaaaact ttagtagatg gtggaaagca tttaggtaag gataattttt tcccttcttt
    11641 tgctttaagc aaagatgaac aagctgcggc taatatggca agacttagtg tagaatatac
    11701 agaaaaaagc ttttatgctc cgcaaaatga tattttaaaa tcagacattt tacaagccat
    11761 gatgaaagat tataatcaaa gcaatgtgga tttatttcta gcttcattat caaaacctga
    11821 ttttaaaatc gatacaccaa aaactcgtga tatttatctt tatatgcccg ctagaatgtc
    11881 tttgattttt tctacggtgg ctagtttttc ttttattaat ttagatacag gagttttgga
    11941 taaacctttt acctttagca cagcttatcc acttgatgtt aaaaatggag aaatttatct
    12001 tagcaacgga gtggttttaa gcgatgattt tagaagtttt aaaataggtg ataatgtggt
    12061 ttctgtaaat agtatcgtag agattaattc tattaaacaa ggtgaataca aaatcactcc
    12121 aattgatgat aaggctcagt tttatatttt ttatttaaag gatagtgcta ttccttacgc
    12181 acaatttatt ttaatggata aaaccatgtt taatagtgct tatgtgcaaa tgtttttttt
    12241 aggaaattat gataagaatt tatttgactt ggtgattaat tctagagatg ctaaggtttt
    12301 taaacttaaa atttaagggt tgaaaatgag aataggattt ttatcacatg caggagcaag
    12361 tatttatcat tttagaacgc ctattataaa agcattaaaa gatagaaaag acgaagtttt
    12421 tgttatagtg ccacaagatg aatacacaca aaaacttaga gatcttggct taaaagtaat
    12481 tgtttacgag ctttcaagag ctagtttaaa tccttttgtg gttttaaaga atttttttta
    12541 tcttgctaag gttttgaaaa atttaaatct tgatcttatt caaagtgcgg cacacaaaag
    12601 caataccttt ggaattttag cagcaaaatg ggcaaaaatt ccttatcgtt ttgctttggt
    12661 agaaggcttg ggatcttttt atatagatca aggttttaag gcaaatttag tgcgtttttt
    12721 tattaataat ctttataaat taagttttaa atttgcacac caatttattt ttgtcaatga
    12781 aagtaatgct gagtttatgc ggaatttagg acttaaggaa agtaaaattt gtgtgataaa
    12841 atctgtaggg atcaatttaa aaaaattttt tcctatttat gtagaatcga aaaaaaaaga
    12901 gcttttttgg aaaaatttaa acatagataa aaaacccatt gtacttatga tagcaagagc
    12961 tttatggcat aaaggtgtaa aagaatttta tgaaagtgct actatgctaa aagacaaagc
    13021 aaattttgtt ttagttggtg gaagagatga aaatccttct tgtgcgagtt tggagttttt
    13081 aaactctggc gcagtgcatt atttgggtgc tagaagtgat atcgtagaac ttttgcaaaa
    13141 ttgtgatatt tttgttttgc caagctataa agaaggcttt cctgtaagtg ttttggaggc
    13201 aaaagcttgc ggtaaggcta tagtggtgag tgattgtgaa ggttgtgtgg aggctatttc
    13261 taatgcttat gatggacttt gggcaaaaac aaaaaatgct aaagatttaa gcgaaaaaat
    13321 ttcactttta ttagaagatg aaaaattaag attgaattta gctaaaaatg ccgcccaaga
    13381 tgctttacaa tacgatgaaa atataatcgc acagcgttat ttaaaacttt atgatagggt
    13441 aattaagaat gtatgaaaaa gtttttaaaa gaatttttga ttttatttta gctttagtgc
    13501 ttttggtgct tttttctccg gtgattttaa tcactgcttt acttttaaaa atcactcaag
    13561 gaagtgtgat ttttacccaa aatcgtcccg ggttagatga aaaaattttt aaaatttata
    13621 aatttaaaac catgagcgat gaaagagatg aaaagggtga gttattaagc gatgaattgc
    13681 gtttgaaagc ttttggaaaa atcgttagaa gcttaagttt ggatgagctt ttgcaacttt
    13741 ttaatgtttt aaaaggggat atgagttttg ttggacctag acctcttttg gttgagtatt
    13801 tgcctcttta caataaagag caaaaattgc gtcataaagt gcgtccaggt ataacaggat
    13861 gggcgcaggt aaatggtaga aatgctattt cttggcagaa aaaattcgaa cttgatgtgt
    13921 attatgtgaa aaatatttct tttttgcttg atttaaaaat catgttttta acagccttaa
    13981 aggttttaaa acgaagtggg gtaagcaaag aaggacatgt tacaacggag aaatttaatg
    14041 gcaagaactg aaaaaattta tatttatggt gctagtggtc atgggcttgt ttgtgaagat
    14101 gtggctaaaa atatgggtta taaagaatgt atttttttag atgattttaa aggaatgaaa
    14161 tttgaaagta ccttacctaa atatgatttt tttatagcca taggaaacaa tgaaattcga
    14221 aaaaagattt atcaaaaaat ttcagaaaat ggctttaaaa ttgtcaatct tatccataaa
    14281 agcgcgctta taagtcctag tgcaagtata gaagaaaatg caggaatttt aatcatgcct
    14341 tacgtggtaa ttaatgctaa agccaaaata gaaaaaggcg tgattttgaa tacttcaagt
    14401 gtgattgaac atgaatgtgt gataggggaa ttttctcatg tgagtgtagg ggctaaatgc
    14461 gcaggtaatg taaaaattgg taaaaattgt tttttaggga ctaattcttg tgttttgcct
    14521 aatttaagtt tggcagatga tagtatttta ggtggtggag caactttagt taaaaatcaa
    14581 gatgaaaaag gtgtttttgt gggagtacct gcaaaaagaa aaatatgaaa tgattataaa
    14641 aagatttttg tttgattctt tgtaaatttt tttaggtaaa atagagtcaa tttataaaaa
    14701 ttttgtttta cacaaaggat aaatcatgag attttttctt tctcctccgc atatgggtgg
    14761 taatgaatta aaatatatag aagaagtttt caaaagcaat tatatagcac ctttgggtga
    14821 atttgtaaat cgctttgaac aaagtgtcaa ggcttacagt aaaagtgaaa atgccttagc
    14881 tttaaattca gccacagtgg ctttgcattt agctttaagg gtggcagggg taaaacaaga
    14941 tgatattgtt ttggcttctt cttttacttt tatcgcttca gtagcaccta tttgttatct
    15001 taaagcaaaa cctgtattta tagattgtga tgaaacttat aatatcgatg tagatttatt
    15061 aaagcttgct attaaagaat gtgaaaaaaa accaaaagca ttgattttaa ctcatcttta
    15121 tggcaatgcg gctaaaatgg atgaaattgt tgaaatttgc aaagaaaatg aaattgtttt
    15181 aatcgaagat gctgctgaag ctttaggaag tttttataag aataaagctt taggaacttt
    15241 tggagaattt ggagcttatt cttataatgg caataaaatt atcaccactt caggtggagg
    15301 tatgcttata ggaaaaaata aagaaaagat tgaaaaagca agattttata gcactcaagc
    15361 tagggaaaat tgtttgcatt atgaacattt agattatggt tataattacc gcttaagcaa
    15421 tgttttagga gctattggcg tagcgcaaat ggaggtttta gaacaaagag tgcttaaaaa
    15481 aagagaaatt tatgagtggt ataaagaatt tttaggagag tgttttagct ttttagatga
    15541 attagaaaat tcaagaagca atcgctggtt aagtacagct ttgattgatt ttgataaaaa
    15601 tgaacttaat tcttgtcaaa aagatataaa tatcagtcaa aaaaatatta ctttgcatcc
    15661 aaaaatttca aaactcatag aagatttgaa aaatgaacaa atagaaacaa gaccattatg
    15721 gaaagctatg cacgctcaag aagtatttaa aggagctaag gcttatctta atggcaatag
    15781 tgagttattt ttccaaaaag gaatttgttt gccaagtggc acggcgatga gtaaagatga
    15841 tgtttatgaa atttcaaaac tgatcttaaa gagcataaag gcttaaaatg attttttata
    15901 aaagcaaaag attagcattt tttttaactt cagatattgt tttaatttta cttagcgttt
    15961 atctggcttt ttctttgaga tttagtggag atattccgag tattttttat catggtatga
    16021 tggtttctgc tattattttg cttgttttaa aactttcatt tttgtttgtt tttagaattt
    16081 ataaagtagc ttggagattt ttttctctca atgaagcaag aaagattttt atcgctttgc
    16141 ttttagctga gttttgtttt tttcttattt tttatttttt tagtgatttt tttaatcctt
    16201 ttccaagaag tgctattgtg atagattttg ttctttctta tatgtttata ggtactttaa
    16261 gaattagcaa aagaatgctt gtggatttta aaccttttag aatgaaagaa gaagaaactc
    16321 cttgtattgt agtaggggca acttctaagg ctttgcattt gttaaaaggt gcaaaagaag
    16381 gttctttagg gctttttcct gtaggcgtag ttgatgcgag aaaagagctt atagggactt
    16441 attgtgataa atttattgta gaagaaaaag aaaaaataaa atcttatgta gaacaagggg
    16501 taaaaactgc cattattgct ttaagacttg aacaagaaga gcttaaaaaa ctttttgaag
    16561 aacttgtagc ttatggtatt tgtgatgtaa aaatattttc ttttacaaga aacgaagcaa
    16621 gagatatcag tatagaagac ttgcttgcta gaaaaccaaa agatttagat gatagtgctg
    16681 tggcggcttt tttaaaagac aaggtagttt tggtaagtgg agcaggtgga actataggca
    16741 gtgaactttg taagcaatgt attaaatttg gcgctaagca tcttattatg gttgatcata
    16801 gtgagtataa tctttataag atcaatgatg atttaaattt atataaagaa aaaattactc
    16861 ctattttact gagtatttta gataagcaaa gtttagatga ggtattaaaa acttataaac
    16921 ctgagcttat tttacatgca gccgcttata aacatgtgcc tctttgtgaa caaaatccac
    16981 attcagcagt aatcaataat attttaggaa ctaaaatttt atgcgacagt gctaaagaaa
    17041 ataaagtagc taaatttgtg atgataagta cagataaagc agtgcgacca acaaatatta
    17101 tgggttgcac taaaagagtt tgtgagcttt atactttaag tatgagtgat gaaaattttg
    17161 aagttgcttg tgtgcgtttt ggtaatgttt taggttctag tggtagtgtg ataccgaaat
    17221 ttaaagcaca aattgccaat aatgagcctt taactttaac gcaccctgat atagtgcgtt
    17281 attttatgct tgtggctgag gcagtgcaac ttgttttaca agctggagct atcgcaaaag
    17341 ggggagaact ttttgttttg gatatgggta agcctgtgaa aatcatagat ttagctaaaa
    17401 aaatgctttt actttctaat cgcaatgatt tagaaattaa aatcacaggc ttaagaaaag
    17461 gtgagaagct ttatgaagag cttttgattg atgaaaatga tgctaaaacg caatatgaga
    17521 gtatttttgt agcaaagaat gagaaggttg atcttgattg gcttaataaa gagatagaaa
    17581 atttacaaat atgtgaagat atttcagagg ctttattaaa gattgtacct gaatttaaac
    17641 acaataaaga aggtgtataa tgtatataaa agatatacaa agatttgaag ataatcgcta
    17701 tcgtgctaga gcttatatga gttatatttt aacaagaaat ctgcccaata aacttcctga
    17761 tattcacctt gaaacgatta aaacagcttt ggataaaata gctcatgaag ttgttgtttt
    17821 tgatgctttg tatattttag atatttcagg catgcaaata gaaaatgcga tttccttaaa
    17881 taaagctcat gaaatagggc agggtgagga tagaagtact cgttcttatt tttatagagc
    17941 tgtaaaatta agacgatgtg ttttaagcga tccttatcct tcggttttaa ataatgagct
    18001 ttgcgtgaca gcttctatgc caatttacga tgataaaaat aacttgcttt ttgttgtttg
    18061 tattgatatc aagcttgaag atattttaaa gattattcaa gcaggaaaat ttgagtttgt
    18121 ttttactcaa tttagtcgtt cggtatattt ttgcttcgca ctggttttat ttgtgattac
    18181 ttgtttttta tttcaaaaag gtttttttag tctttttgat aatcaagcta taggtataga
    18241 acatatgttt gaaagtacca tcgctataac tttggcttta gctatttttg atttggcaaa
    18301 aactttgatc gaacaagaag tattaggaag gacaaaaaaa gaagaaggtg gaattcaaaa
    18361 aactatggtg agatttttgg gttctattat cattgcttta gctatagaag ctttgatgtt
    18421 ggtatttaaa cttgctattg gtgatctttc tcagatgatt tatgcgattt atcttatcgg
    18481 tggagtgagc ttgcttcttt taggtttaag tgtatattta tttacggtta agtataaaaa
    18541 taataatatt tgagtaaaaa tttaagtaaa agatgatata atgctgtttt ttaaaatttt
    18601 ttagcttgat taataaggct aaaaagggta aaataaaact ataaaaactt tgaaaggacg
    18661 aaattgtgaa attgttagtt gttgatgaca gttctactat gagaaggatt attaaaaata
    18721 ccctaacaag acttggacac gatgatgttt tagaagctga gcatggcgtt gaagcttggg
    18781 atttattaac taaaaatgaa gatgtaaaag ttttaattac agattggaat atgccagaaa
    18841 tgaatggctt ggagttggta aaaaaagtaa gagcagagaa aaaatatgaa gatatgccta
    18901 tcatcatggt tacaactgag ggcggaaaag ctgaagtgat tactgcttta aaagctggcg
    18961 taaataacta tattgtaaaa ccttttactc cacaagtttt aaaggaaaaa cttgaagatg
    19021 ttttaggaac aggaagtgga gaaggtgcag ctgattaaag gctgattttt aaaattctaa
    19081 atgcaaaaaa aatattatga attgttcttt attgtagaag agcggtataa aaatttattt
    19141 cttgattttg cttttgattt aggtatagaa gccatagaag agaaagataa tggtgtttac
    19201 attagatccc atgagagttt agaagagttt tcatgggcac ttgaaatatt tgctcaaaaa
    19261 cttacaacta ctttcaattt aaaccataaa attatttcta atttaagtct tgtagagaaa
    19321 gaaaacaagg actggataca agaatataaa aaaggcataa aacctatctt agtggataat
    19381 gtttacatcc atacaacttg gcaagaagaa aagaagaatt gtataaatat aaagattaat
    19441 ccagccttag cctttggctc aggacatcac gaaagcacat attcttgtgt aaaattttta
    19501 caaaaatttt ctaaaagtaa attaagagct ttagatcttg gttgtggtag tggaattttg
    19561 ggtattatta tggcaaagtt tggttgtaat gttgaaattt gtgatactga tgagttggct
    19621 attgatagtt ctttagaaaa tgcaagatta aatggtgtcg attttcacaa ggcttggtgt
    19681 ggatctatag ataaagcaaa tggtttatat aatctaattg ttgcaaatat cattgcagat
    19741 gtgattttaa ttttagaaaa agatattaaa aaccatttag aagataatgc tatacttatt
    19801 ttgtcaggaa ttttagataa atattcaaca agaattaaag aaaaatttca agatttggaa
    19861 ctcattgatg aaatgcaaat caatgagtgg tgtagttttg tatataaaaa taataaaaaa
    19921 ggataagcaa tgaataataa tacccaaaat aataagggta atccgcaggg taataatttt
    19981 tttaacaaaa atcccatttt tatttttgcg atttttgcaa ttgtaatgat aattattttt
    20041 aagggatttt ttgatggcaa tggttctttt ggcggggcat tgaatggcaa tgaagtaaat
    20101 aaaaatgtcc cttattctga gttaaaaaag cttattgaaa gtggacaaat caatcaagtt
    20161 agtataggac aaacaacaat caaagcgatt tcaagctctc acaatactgt ttatacagca
    20221 aaaaaagtta atgatcctga gcttgtgagt ttactagata gtaaaaatat cgcttatggt
    20281 gcgtattctg aaacaaattg gtttacggat atactttttt catgggtttt gccagtattt
    20341 attttctttg gtatttggat gtttttggca agtcgtatgc aaaaaaatat gggaagttct
    20401 atattgggta taggaagttc taagaagctt gtaaattcag aaaaacctaa agtaaaattt
    20461 agcgatgtag ctggtgttga agaagctaaa gaagaagtaa aagaaattgt agatttttta
    20521 aagtatcctg aaagatatat taaattggga gctaaaattc caaaagggct tttacttgtt
    20581 gggcctccag gtacaggaaa aactttgctt gcaaaagcag ttgcaggtga agctgatgtg
    20641 ccgtttttta gtgtttcagg ttcgtctttt atagaaatgt ttgtgggtgt aggtgcttct
    20701 cgtgtgagag atttatttga aaatgcaaaa aaagaagctc ctgctattgt ttttatagat
    20761 gaaatagatg ctattggtaa aagtcgtgca gcaagtggca tgatgggtgg aaacgatgaa
    20821 agagagcaaa ctttaaatca gcttttggct gaaatggatg gctttgggac agaaagttcc
    20881 ccagtcattg ttttagcagc aacaaatcgc ccagaagttt tagatgcagc gcttttaaga
    20941 ccaggaaggt ttgatagaca agttttagtt gataaacctg attttaaagg taggtgtgat
    21001 attttaaaag tgcacatgaa agatgtcaaa atctccccaa aagttaaagt agaagatata
    21061 gcacgcttaa ccgcagggct tgcaggagct gatcttgcaa atattattaa tgaagcagcg
    21121 cttttagcgg gtagggattc taaaaaatat gtagaacaaa atgatttagt tgaagctgtt
    21181 gaaagagcta tagcagggct tgagaagaaa tcacgtcgta ttaatgaaaa agaaaagaaa
    21241 attgttactt atcatgaatg cggtcatgct ttgattgctg aaactaccaa aggcgcaaaa
    21301 cgtgtaagta aggtttctgt gattccgcgt ggtcttgcgg ctttaggtta tactttaaat
    21361 actcctgagg aaaataaatt tttaatgcaa aaacatgaac ttatcgctga agtagatgta
    21421 cttttgggtg gtcgtgcagc tgaagaagtg tttataggtg aaatttcaac gggtgcaagt
    21481 aatgatttag aaagagcaac cgatatcata aaagctatga tttctatgta tggtatgagt
    21541 gaaattgcag gacttatggt acttgaaaaa caaagaaata ctttcttaag tggtggacaa
    21601 actatcaaag attattctga aaagatggca gaatctttag atgattatgt aaagaaaacc
    21661 ttggatgaac gctataaaga tgttaaagat actttaaata cttataaggg agcgattgag
    21721 actatggttg cagcccttta tgaagaagaa actattgaag gtaataaagt gcgcgagatt
    21781 attaaagagt ttgaggatca aaatagtcta ccaactcgtt tacaagaact cgaagaagtt
    21841 aaaactgaag ttaaagtaga agaatgaaag attttattgc aaaagatgga tatttaagtc
    21901 ttattatttt aagcttaatt tttatttttg tgtggatttt ttattctttt tccatcttgc
    21961 tattagcatt aattgtaatt tgtatttttc tttttagggc gcccaaaaga gaacttgttt
    22021 gtagtgatga aaaagctatt tttgcaccta tggatggtag ggttactaaa atagaaaata
    22081 ttcatcataa agatttgggt gaatgtgttg aaattactat taaaaatgct ctttatgatg
    22141 ctgggaattt taatacacct tttgcaatgt ctataataga tattcgttta cgacatgggc
    22201 tttttttgtg cagtgaatta aaatctgcaa aaatgatgaa tgaaagagct tttattttgg
    22261 caaaagttaa agagaataaa acgatagcct tgcgaatcta tgcaggttct tttgatagaa
    22321 aattaaagct tgataatatt tctcatgatt taaaagcagg agatagaatg ggttttttaa
    22381 ttaatggctc tataagttta cttttaccaa aagatactag aattcatata ggcttaaatg
    22441 atgaaattaa agcaggttca ttgctaggct attttgcgta aggaaaaata atgaataaca
    22501 gaccgcaact aatttatatt ttacccaatc tttttacagc tgcttcagct tttttagggg
    22561 ttatttctat tatagcttca atacatggaa attattatac agctttgatt tatattattt
    22621 tatctttgat ttgcgatggg cttgatggcc gtgttgcaag acttacaaat tctacttcaa
    22681 aatttggagt agaatttgat tctttggctg atctagtagc ttttggagtt gctccagcgg
    22741 ttctttttta tatggcgata ggttatgatt ttggaaaact tggatctttg attacagctt
    22801 tttttgtggt ttttggagct attcgtttgg cgagatttaa tgttaccaca ggcacttatg
    22861 aaccctccgt ttttataggt cttcctatac ctactgcagc agttgtgagt gctatatgga
    22921 cttatgcgtt tatcagttat gattttttaa agccttatgg cgtagttttt ttggtgcttc
    22981 aagcaatttt agggctttta atggtaagta atatacgtta tcctagtttt aaaaagcttg
    23041 attttaatcg ttctagtgtt ttaaaagttt tgattatttt aattataata ttttcatttt
    23101 tatatcttta ccctcttgaa agtttagtaa ttttagcaag cttgtatgtg ctttatggaa
    23161 ttattcgggt tttatatacc attatcgttt caaaatttaa gataagaaat caagagtaaa
    23221 atttttcaat gacttcgcat tcttcttgag tgaagccagc tttgattctt gcttgaatgt
    23281 taagtttttt tcccgcaaga gagaattgtt taaatgtttt gcaaagctca ataaaatcat
    23341 acctgttttg atttgcaaat ttccaccaag tatctccttt tttaacgtgt tttatttcat
    23401 cattaagtat aatttcaaga tattctatta gaagattttt aatggaatga ttggaacttt
    23461 gaagtttttg aacaacaaag gggttggcat caagcccttt agcttctaaa cctctatgaa
    23521 ctactcccat tctaaagctt aaagagtctt ttgtagcttc tagagcagat tctaaattat
    23581 catgcactgg aaaatttcca tatttgtaac taagttcttt aagtgctgaa tttaaaagtt
    23641 tgaaatgttt aatttcctca tctgctacct ccagccaatc gtaataaaat tgcaaaggta
    23701 gattcttaaa gcgataactc gcatctaaag ccaggttaat tgcattaaat tctatatgag
    23761 cgactgaatg aattatttta gcaagcgcat gagttgaatt gacaaattta ggccttctta
    23821 tacgcgtagg atgaagcaag gtaatttgtt gtgatgtatt ttttttgaaa atgctttgat
    23881 gctcgtgatt aaaaatcaat ttgtggcttt taaagtcttc ataaaaattt tgaaaagagt
    23941 gaaattttat
//
LOCUS       DAQSLY010000012        23899 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.012, whole genome shotgun sequence.
ACCESSION   DAQSLY010000012 DAQSLY010000000
VERSION     DAQSLY010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23899
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.012"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..707)
                     /locus_tag="R2H98_000365"
     CDS             complement(<1..707)
                     /locus_tag="R2H98_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023286.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLRLDWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFITTSKEGVASVNFKIISTSNGKILAAKNAKLNL
                     ILKDQDTKQNYQDIVNQ"
     gene            complement(747..1511)
                     /locus_tag="R2H98_000366"
     CDS             complement(747..1511)
                     /locus_tag="R2H98_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEE9023287.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYNPLSYKSNPFICVSSRNFLQDFL"
     gene            complement(1591..2859)
                     /locus_tag="R2H98_000367"
     CDS             complement(1591..2859)
                     /locus_tag="R2H98_000367"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEE9023288.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2974..4149)
                     /locus_tag="R2H98_000368"
     CDS             complement(2974..4149)
                     /locus_tag="R2H98_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEE9023289.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYALSSLIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(4130..4966)
                     /locus_tag="R2H98_000369"
     CDS             complement(4130..4966)
                     /locus_tag="R2H98_000369"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEE9023290.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4968..7070)
                     /gene="topA"
                     /locus_tag="R2H98_000370"
     CDS             complement(4968..7070)
                     /gene="topA"
                     /locus_tag="R2H98_000370"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEE9023291.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            7265..8536
                     /locus_tag="R2H98_000371"
     CDS             7265..8536
                     /locus_tag="R2H98_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023292.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAIGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLTWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(8564..9829)
                     /gene="secY"
                     /locus_tag="R2H98_000372"
     CDS             complement(8564..9829)
                     /gene="secY"
                     /locus_tag="R2H98_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEE9023293.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNSYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(9829..10221)
                     /locus_tag="R2H98_000373"
     CDS             complement(9829..10221)
                     /locus_tag="R2H98_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEE9023294.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(10226..10669)
                     /gene="rpsE"
                     /locus_tag="R2H98_000374"
     CDS             complement(10226..10669)
                     /gene="rpsE"
                     /locus_tag="R2H98_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEE9023295.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(10681..11037)
                     /locus_tag="R2H98_000375"
     CDS             complement(10681..11037)
                     /locus_tag="R2H98_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEE9023296.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYIYHG
                     VIAALAESLRENGIRL"
     gene            complement(11047..11583)
                     /gene="rplF"
                     /locus_tag="R2H98_000376"
     CDS             complement(11047..11583)
                     /gene="rplF"
                     /locus_tag="R2H98_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEE9023297.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(11662..12057)
                     /gene="rpsH"
                     /locus_tag="R2H98_000377"
     CDS             complement(11662..12057)
                     /gene="rpsH"
                     /locus_tag="R2H98_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEE9023298.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(12067..12252)
                     /locus_tag="R2H98_000378"
     CDS             complement(12067..12252)
                     /locus_tag="R2H98_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEE9023299.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(12254..12799)
                     /gene="rplE"
                     /locus_tag="R2H98_000379"
     CDS             complement(12254..12799)
                     /gene="rplE"
                     /locus_tag="R2H98_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEE9023300.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(12803..13036)
                     /locus_tag="R2H98_000380"
     CDS             complement(12803..13036)
                     /locus_tag="R2H98_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEE9023301.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(13036..13404)
                     /gene="rplN"
                     /locus_tag="R2H98_000381"
     CDS             complement(13036..13404)
                     /gene="rplN"
                     /locus_tag="R2H98_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEE9023302.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(13404..13655)
                     /gene="rpsQ"
                     /locus_tag="R2H98_000382"
     CDS             complement(13404..13655)
                     /gene="rpsQ"
                     /locus_tag="R2H98_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEE9023303.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(13665..13850)
                     /gene="rpmC"
                     /locus_tag="R2H98_000383"
     CDS             complement(13665..13850)
                     /gene="rpmC"
                     /locus_tag="R2H98_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEE9023304.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(13837..14262)
                     /gene="rplP"
                     /locus_tag="R2H98_000384"
     CDS             complement(13837..14262)
                     /gene="rplP"
                     /locus_tag="R2H98_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEE9023305.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(14265..14966)
                     /gene="rpsC"
                     /locus_tag="R2H98_000385"
     CDS             complement(14265..14966)
                     /gene="rpsC"
                     /locus_tag="R2H98_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEE9023306.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(14966..15391)
                     /gene="rplV"
                     /locus_tag="R2H98_000386"
     CDS             complement(14966..15391)
                     /gene="rplV"
                     /locus_tag="R2H98_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEE9023307.1"
                     /translation="MSKALIKFIRLSSTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     VKAEVKAEEKKTVAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            complement(15402..15683)
                     /gene="rpsS"
                     /locus_tag="R2H98_000387"
     CDS             complement(15402..15683)
                     /gene="rpsS"
                     /locus_tag="R2H98_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEE9023308.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(15685..16515)
                     /gene="rplB"
                     /locus_tag="R2H98_000388"
     CDS             complement(15685..16515)
                     /gene="rplB"
                     /locus_tag="R2H98_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEE9023309.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVSAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(16517..16798)
                     /locus_tag="R2H98_000389"
     CDS             complement(16517..16798)
                     /locus_tag="R2H98_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEE9023310.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(16801..17415)
                     /gene="rplD"
                     /locus_tag="R2H98_000390"
     CDS             complement(16801..17415)
                     /gene="rplD"
                     /locus_tag="R2H98_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEE9023311.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            complement(17412..17987)
                     /locus_tag="R2H98_000391"
     CDS             complement(17412..17987)
                     /locus_tag="R2H98_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEE9023312.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(17997..18308)
                     /gene="rpsJ"
                     /locus_tag="R2H98_000392"
     CDS             complement(17997..18308)
                     /gene="rpsJ"
                     /locus_tag="R2H98_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEE9023313.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(18507..19268)
                     /locus_tag="R2H98_000393"
     CDS             complement(18507..19268)
                     /locus_tag="R2H98_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEE9023314.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(19304..21298)
                     /locus_tag="R2H98_000394"
     CDS             complement(19304..21298)
                     /locus_tag="R2H98_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEE9023315.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(21267..22067)
                     /gene="rsmA"
                     /locus_tag="R2H98_000395"
     CDS             complement(21267..22067)
                     /gene="rsmA"
                     /locus_tag="R2H98_000395"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEE9023316.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            22147..22683
                     /locus_tag="R2H98_000396"
     CDS             22147..22683
                     /locus_tag="R2H98_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEE9023317.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLSQLYFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            22707..23777
                     /gene="rlmN"
                     /locus_tag="R2H98_000397"
     CDS             22707..23777
                     /gene="rlmN"
                     /locus_tag="R2H98_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEE9023318.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     NLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELVDGLRIESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            23774..23872
                     /locus_tag="R2H98_000398"
     CDS             23774..23872
                     /locus_tag="R2H98_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023319.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
BASE COUNT         7301 a         4445 c         3415 g         8738 t
ORIGIN      
        1 atttgattta caatatcttg ataattttgt tttgtatctt gatcttttaa tatcaaattt
       61 aattttgcat tttttgctgc aagaattttt ccattgcttg tagaaataat tttaaaatta
      121 acactagcca caccctcttt actagttgtg ataaaataat ttgtaatatt tacataaaaa
      181 tcttgcaaat ttaccaccac aacataatct gtaaatttgg catacatttt agccttatct
      241 ttttcttgtg ttaaaaaagg acttacattt ataagttttg catccttagg gctaaaatat
      301 gacaaagttt taggactttg ataaatacca tttgcagcag aattaaccca atcaagcctt
      361 aaactttgaa tcaaattttt agcaaataat gtagaaaatt ccttatcact caccctaaaa
      421 ccatctaaaa aataaccaaa atttttccta gaagttaata caatagcaaa atcaatatcc
      481 ttatctttgg tgatttgcga ttttttttca attaaagtag aactatcaaa caatgctttt
      541 tgttgattta gatttggatt tgcaacattt tgatttagat ctattacttc aaaactatct
      601 gcgctttttt caattttaat aacttttttc tgagaaaaat tattcgctaa aagattagaa
      661 cttaaaacta aacttaaaaa caaaatgaaa caatacctca tcttcatcct tataaactat
      721 ttaaatataa aattatactc tttattttat aaaaaatctt gtaaaaaatt cctagatgaa
      781 acacaaataa aaggattgga tttataactt aaagggttat ataaaatgta ttttttagaa
      841 aaatcgccca taaatcctcc attttgatta atcaaaaaat ctcctgctac aatatcccaa
      901 atattaagct tttcaaatct tttataaact cctgccctag cctctaaaat agcacaaaat
      961 ttcaatccag agcctatatt aatagcttct aattgatgct cttttgcaaa gtcttcatct
     1021 tctttgctaa gatgattaac actcaataag gctttatatt tatttttctc gtattcttgc
     1081 tggtcaattt gcaaaggttt atcgttttta taaaccttgg tttttgcatg agcatagaat
     1141 atatcacctt ttgatggatt ttgtatgagt gataaaacag ggcgattgtc atgaaccaaa
     1201 cttatcataa cgcaaaattc atcactgcct tttaaaaaac cacttgttcc atcaagagga
     1261 tcgataagcc aaaaagtttt taattcttca cactcttctt tgctgagtaa tttttcttct
     1321 gatagaattt taatatccgt agaacccaaa atatcattta gaattttatt agaagcaaga
     1381 tctgctgatg taagcgggct tttatcttct ttttcccaag ttttgaaatt ttttctctct
     1441 tctaaaatag ctttagaagc ttgattgcta gcatttatag caatttctaa aaatttatca
     1501 agattaagca tgattataaa ctttctataa gattttttaa aattatacaa gaagattttg
     1561 tggaattttt aatttccaca aaaattttaa ttaaatttta ctagtttcac ccaaataaag
     1621 ttgtcttgga cggactattt taagactttc ttgctctttt tgttctatcc actgagctat
     1681 ccatcctggg gtgcgcccta taacaaataa agtagcaaac atttcatttg gaatacctaa
     1741 ggcttttaaa ataagtccac tatgaaaatc aacattcgga tataaccctc tttgaacaaa
     1801 ataatcatcg cttaaagcaa tctcttctat acgcgttgct actttaataa gattggtatc
     1861 aatacccaac tcatcaataa gttgatcacg aagctttttc agtacttttg ctctaggatc
     1921 aaaattttta taaaccctat gcccaaagcc catcaagcgg aaaggatcgt ttttatcctt
     1981 agctcttttg atgaattcat ctaccctatc aacactacct atttgctcaa gcattctaat
     2041 aacaccttca ttagctccac catgtgcatg accccaaagc gcaccaatac ctgctgctat
     2101 acaggcataa ggatgagcat gagttgaacc cacagcacga actgttgaag ttgaagcatt
     2161 ttgctcatga tctgcatgaa gcataaaaac tgtatcaagt gcttttactt ctataggttt
     2221 aagctctaca tgatcgtaag gataggttct taacatatat aagaaatttt ctgtaaaacc
     2281 acgatctaaa tttggataag ccataggaaa gccgtgttta tatctataag cggtggccac
     2341 tatagtaggg attttagcta ctattctagc tgccatttcc atatattctt cttttacatt
     2401 catgtttaaa tgatcaggat aaaaagcact aagcgatgaa acagcacctt gtaaaactgc
     2461 cataggatga gcattatcag ggaaagaatc aaaaagacgg tgcatacctt catggataaa
     2521 agaacgtttt ttcatttcat aacgaaacgc ttcaagacgc gtagcatcag gtagttcttt
     2581 ataaagtaaa agatgaacca catctaaata aagtttgttt tcagcaagcc actctatagg
     2641 atagccacgg tgcattaaaa ttccattttc tccatcaata taagtgattt ttgatttaca
     2701 agtagctgta gaagtcaagc cctcatcata agaaaacatt cctgtttgtt tataaaaact
     2761 tgacatatct acaacgcttg gcccagttgt accgtcatat ataggaaatt catagctttt
     2821 tccatttcta ttatcggtta tagtaacgga atttgacatt ttcgctcctt ttattgttac
     2881 ttttattaat tctaacaaaa aaggacgatt atgagttttt ttattattaa atttttaaga
     2941 ttttgtttgc ttttttgagt aaaaaagtaa ctttcatttt ttagaattag aaagaaattt
     3001 aatcatactc ataacaataa cagcctcaaa taacgctgtt aaaataagcg ctgaataaag
     3061 tttctcatca ataaccttgc ccgaataacc cagagtagct gttgctataa gcaaggttaa
     3121 aggcatagaa tgactaagac caaataaaat catattttta aaaccaattc tttttaaaaa
     3181 aacacttgca cataaaattc ttaaacccac cataacaaac ataagtaaaa atgcttgtaa
     3241 aacgatttta taatctaaaa tcattttaag atcaaaggtt gaacctatat ggataaaaaa
     3301 aatagggatc aaaaacccat gtccaaaagt agaaagctta tgctcaagat cttttttatg
     3361 atcaaaaaaa gtagctataa atgagcctgc tataaaagaa ccaagaacga tttcaagttt
     3421 tgtaataacc atagcaacaa tgatcagtat aaaaatggcc atacaaaatc ttatatcttt
     3481 ttcattttta tcctcccatg gcataagcac aactttaagc tgaggatacc accaaaaaag
     3541 cacaccaagc attttaaatc cgagcaaaca aagtcccaaa aagatattaa gatataaaat
     3601 actttgcgct acatcaataa tacctgttcc ttcgcgcaaa aaagctcccg ctatagtcaa
     3661 aagcacaata gaaatcacct cagctaaagt agccactatc atagcaatat ttagccaata
     3721 acactctttt ccaaaatcct taaaaagcaa agataaaagc cctacactca tcacaggtat
     3781 aatgataaca aatactaaag aaagtccaaa aatccatact ataagagaag ataaagcgta
     3841 aagtaaaaaa atataaaaaa aacttttttt ggcgacttct ttatccatat taaaaaaggc
     3901 tcttaaattt acttccatac ctgctataaa cattagataa taaaaaccta catttgctaa
     3961 aagtgcaaaa ttttcacttt ttcctatgaa accaaaatat gctattattg cccctaaaat
     4021 aatttcagta gctgaaagag gcaagcgtaa aatttttgca atatgcggag aaaaaagtaa
     4081 gcataaagct ataacaataa gaatttttag atcaattaaa ccttgtggat caatgacact
     4141 ctgatgcaaa agtaaatccc atttctttta attttattat atcttgactt ggttcttcac
     4201 ctttagtggt taaataatcc cctataacaa tagccccagc acctgcttga aaaatttcat
     4261 actgcctttc tcgcaacacc acttcacgcc cacctgctac cattaccacg ctttgcggta
     4321 aagcctcttt ggtatcacga acaattttta aggcttcatc agcattaagt cttggaactt
     4381 gtagttttaa attttcattt gctataaaaa aattaatagg cgttgaaaaa ggctgtaatt
     4441 cttgcaaaga ttttctaaaa cttagtctat cttcttcact ctcacccata ccataaattc
     4501 caccacaaca aagcataagt cctgcttctt tagcgtttaa attggtttga aatctacttt
     4561 cccaagtatg agtggtgcaa atttgtggaa aaaattcctt agaactttca agattgtgat
     4621 tataagaaaa aattcctgct tttttaagtt ctttgagttg ttccacgctt gccataccat
     4681 tacaggcaat taaaagcaaa ttaggcactt ctttttgcac agccttagca gcctcacaaa
     4741 catactcaag cttttcatca tcaagcccaa gtcctgctgt aaccaaacaa aaacccaagg
     4801 cttcattttt ctttgccatt ttcgcttcta aaacgatttg tgaaagttct ttacgacgat
     4861 atttttgaat atctgttttt acatgggcac tttgggtgca gtatttacag tcttctgaac
     4921 aatttccact cgctatattt gaaatagcac aaagcatgat ttgcattcta atccttcatt
     4981 tcttttttga ttttgcactt taagcattct aagaatgtac cttttttaag ctcttttatc
     5041 actaaagttt cgccacactc ttcgcatttt tcttcacttg gtttgtattt gcttataaaa
     5101 ttgcattttg gataagcact acaaccataa aatttaccgc gttttgaaaa gcgttctacg
     5161 atttcacctt tttgacaact tggacaagta atgcctgtac cattagcttt agcttttgcg
     5221 gctgtatttt cgctttcgtt tttgctttca ctttttaaat ttcttgaata cttgcatttt
     5281 gggaaattta aacacgctac aaattctcca aaacgccctt ttctaatagc aagctctccg
     5341 ccacaatcag gacaactttc gcctagtttt gtgacagttt tttgactagc tatttttgtt
     5401 tttccttctt cgatttttct cataaaagga tagtaaaatt cttttaaagt ttcttgccaa
     5461 tctgccttat cttctgcgat ttcatctagg gtattttcaa ggtttgaagt aaatttacta
     5521 tctactatat cgctaaaatt tttctcaagc acttcggtta cattaaaagc aacatcgcta
     5581 ggaatgagtt gttttttatc tattgttaca taatcacggc ttgtaagtat agaaatggtt
     5641 ggtgcataag tagaagggcg acctatgcct aaactttcaa gtttttttac aagtcctgct
     5701 tctgaatacc ttgaaggtgg ttcggtaaaa tgtgagttca tttctaaatt ttgcactttt
     5761 aaattttggc ctattttaaa atttggcaaa attttatcct tatccatatc accataaact
     5821 ttataatatc catcaaaaag gatttttcta ccgcttattt taaaaactgc tctatcattt
     5881 tttacaaata cattttgagt ttgagagata gcaggactca tctgacaggc taaaaagcga
     5941 ttgtaaataa gtgtgtaaag ttttaactca tctttgtcta aaaatttagc cgcaatttct
     6001 ggagtaaaac ttaaatttgt agggcgtata gcttcatgag cttcttgagc gcctttagtc
     6061 tttgtagtat atacatttgc tttgcttgga agatagtctt tgccaaaatt tgcttgtatg
     6121 aattttcttg cattttctac tgcttctttg gctaaattta aactatcggt tctcatataa
     6181 gtaataaccc ccatcacgcc ttcatgggta tttactcctt catagagctt ttgagctatc
     6241 atcatggttt ttttagggtt aaaaccaagg cgattgctgg cactttgttg taaagttgaa
     6301 gtcataaaag gaggcggcgg agcgattttt ctttctttgc tttcaatgtc acttatacta
     6361 taaacttcat ttttacaagc ttctagtata agtttagcac gatctttgtt ggtaatggta
     6421 agtttttcta tcttggcttt atcaaactca actagttctg catctaaatc tttttgaaaa
     6481 atcatatcaa tactaaagta ttctaggggt acaaaggcac gaatttcttt ttcacgatcg
     6541 actatgatct ttaaagccgc actttgaaca cgcccagcac taagtcctct ttgaattttt
     6601 tgtcctaata aagggctgag cttataccct acaatgcgat ctaaaagacg tctggtttgc
     6661 tgagcattta cagagtgcat gtttaatttt cttggatttt ttaaagcatt ttctatagcg
     6721 cttttagtga tttcatgaaa aacaatgcgt ggtaaggtgt tttcatcttt tcctatagct
     6781 tttgcaatat gataggctat agcctctcct tccctatctt catccgttgc aagatagact
     6841 tctttggcat ctttggcttt gcttttaagt tctttaacta aggcgctatg atcacttgtg
     6901 attctatact cagggataaa ttcatcatct tctattttaa tcccaaagct tgatttaggc
     6961 aaatctctaa tatgtccttt agaagcgata acttcataat cttttcccaa aaaatttcct
     7021 atggttttag cttttgcagg agattctact atgattaaat ttttcttcat tttgcaccct
     7081 tgttaaataa aaagctgaat ttagctaaaa atatttaaaa ttctacttat aaaatatatt
     7141 ttaatcaagc taaaatattt taaaaacaaa actatcataa caaaataaat aaaatataat
     7201 tttaagtaat tttaaataca aaccataatt tttggagtat aataaaataa aaaaggtaaa
     7261 aattatgaat gacaaaactt ataaatttca tccaaatgac acaaaaatgg ataaaaaaat
     7321 aattcaaatt actgaaaagt ccggatttaa agcagctgtg ttttctatgg ctgctatgac
     7381 tatgctagga agcgtggtca tttcatctgc tctgcctgct atcaacagac attttgaaga
     7441 acttttaacc caaagtggcg ctactcttgc ttcaagtttc acattagctc atcttgatat
     7501 acttgttcgc ttagttttaa ccatccctgc tatttttgtt gtcattttat ctccatttgc
     7561 tggtatttta atggataaat ttggcaaatt aaaattcatt cttccagcta tggtggtttg
     7621 gactatttct gggataagtg gctttttctt aaatgatatt tatgctatac tgacttcaag
     7681 agctattttt ggtatggcaa ctgcttttat aatgacaggc gcttcggctt tgcttgggga
     7741 ttattatagt cgtggtggct ttaatcgcag agaaaatgct ttaagccttc aaggattttt
     7801 ttgtgcgata gggggtgctg tttttatttc tattgcggga tttgtttcaa gttattcttg
     7861 gcgttatcct tttttggtat atggacttgg aattttaatt accttaatgg ctatcattta
     7921 tctttttgaa cctagaaaat ttaaattcta taatcataca aaaatagaaa caaaaacaaa
     7981 ttattggcaa tttttcccta tctattttat aggttttttt atcatggtag tttattatat
     8041 ttcgccaact caacttcctt actatataga agaacatttg ggattggatc ctaaatatat
     8101 aggtatttcg atgtctgtat ctgcactatg ttatggtttt ttctctctaa gctatagata
     8161 tattataaaa ttcttaagta ttaaaactat ctatgtttta actcttttta tcgtatcttg
     8221 ttcttttttg ctgctttttt tagtagatag ctttttcaca gttttaatcg ccttagcttt
     8281 gcttggaatg ggtggaggta ttatgcttgt aaataatacg gcttatcttt tttcaatctg
     8341 tcctgaaaat gctcgctcta gggcttatgg aattttagca agttgtatat ttttaggaca
     8401 atttttaagt cctattatct ctcaacctat cgttagacaa atgggtcttg tagatgcttt
     8461 tttaacatgg tcaatagtaa tttttatagt gtgcattgtg tttttatttt taaagcaaaa
     8521 acctagaata aattagcaag aaaaatcttg ctaattttat ttattacaaa cctaccgcac
     8581 ttaaagtttg gtatttactc atataaattt gagcttcaat ttttctcatc gtatcaagtg
     8641 ctacttgaac tacaataagt acagaagtgc cgccaaaatg aaaaggcaca cccataaatt
     8701 tcaccaaaac ccaaggtaag gttgcaacaa gccctaaata aatagaacct gataaagtta
     8761 aacgagaagc cacttcgtta agataacttg aagttccttc acctggacga attccaggga
     8821 taaaaccgcc ttgttttttc aaattttctg ctatgtcttt agcgttaaat acgatagaag
     8881 cataaaaata agcaaagaaa attacaaaca agaaagttag aacatgaaac aaataactat
     8941 ttggatttaa aaagtcatta atggcttgta gataaggatt tgtactagtt tgtaaaattg
     9001 ttgttggaaa catcaaaatc gcactagcaa aaatcggtgg aataacccca ctaagattga
     9061 gtttaatagg aatataattc ataatgcgtt tgttttgatt ttgcattaca actttacgag
     9121 aataagaaat aggaattctt ctttctccaa gttctatata aataatcacc cctatggtga
     9181 ttaaaatcaa agcaaaaatt gcaaaagcgg ttaagaaatt catctcgcct gaattgattt
     9241 gtcctacagt tcctgaaatc gctcttggaa tacctgaaac aatacctgca aaaatgatta
     9301 aagaaatacc atttcctata cctctttgtg tgatttgttc gccaagccac attaaaagca
     9361 tagttccagc aagcatagaa atagcacaaa gtgcgataaa catatttaaa tcttctacca
     9421 ttatagcccc tgcaccacca cgaccgtgca agctttgcaa acctatagca acgcctatac
     9481 tttgaaccaa agtaatcaca atagtcgcat aacggataat ttgcatatat ttttgcatac
     9541 tatcacgctc ttttttcatc ttaccaatat ttggaaaagt tgctgcaaga agctccataa
     9601 taatagaagc agtaatataa ggcataatac ctaaagaaat gatagaaaag cgttcagctg
     9661 ctccaccact aaaaacatta aataaaccca aagcattgtt ttgattgtta ttaaaaaatt
     9721 ccgcaatcac atcagcattg acgccaggaa ctggcacata agccagaacc ctataagcaa
     9781 ataaaaatgc taaggtgatt aaaatcttat tcgtcaatgc tctattcatt attttgatcc
     9841 ggtgacgcta atattctcgt ctttgatttt tgatactaag tcttttgcac ttgcaccaat
     9901 taatttgatt ttattcacag attttgaaat tttgtgaaca cttttaatgc tctcaaatgt
     9961 aatttcacta agctctttta cagctgtgat tttttcaaca ttgatcacat aaggtttttg
    10021 aattttagaa gtaaaaccta cttttggtag tcttctttga agtggttgtt gacccccttc
    10081 aaaacctctt ttttcattat aaccttttct agcagtttga cctttacccc ctttagtagc
    10141 agtcttaccc atgccagaac cttgaccacg gccaattctt ttagttttat gcgttgaacc
    10201 cgctgctttt gttaaattca tcttcttatc cttttaacat tgttaaagct ttgattgtag
    10261 cacgaaccac attagctgaa ttatttgaac ccaaagactt ggttaagatg tctttaatac
    10321 ctgcaagttc cacgataggg cgtgtagaac cacctgcgat aactcctgta ccttcgctag
    10381 ctggtttaag taaaattcta cttgcgttgt atttcacctc tacatcgtga gcgatagttg
    10441 agcctttagt tttaacttca acgatatttt taaacgcatc gtcaacagct ttacggatgg
    10501 catctggaac ttccttagcc ttaccataac caacacctac caaacctttg cggtttccaa
    10561 caataactaa agcagtaaat ctaaatcttc taccaccttt aacaacctta gtaactctgc
    10621 cgatatcgac gattacttct tcaaattctt ctctattata tttttccatc gatttacccc
    10681 ttatagccta atgccatttt ctcttaaaga ttcagccaat gctgcgataa caccatgata
    10741 tatataacca tttctatcaa aaacagcttg ttctatcttt ttagctttta aagttttagc
    10801 aaattcagca gcgatttttt tagcaccttc tttatttgct ttaacgccaa gtttgcgtcc
    10861 atcaactgct gctaaagtta cagcttttac atcatcaatc gcttggatat atagagttct
    10921 gttcgattta aatacagaaa ttcttggaaa attttcacaa cctgaaattt tcgctctaat
    10981 tctttttttt cttttgattc ttaaagttag ttttcttttt aatacatttg ctctcatatt
    11041 ctacccttac ttcttagatg tcttaccagc tttgcggata atgcgttcat cagaatactt
    11101 aacgcctttt cctttatatg gctctggtgg tctaaattca cgaatttgag cagcaacttg
    11161 acctacaact tgtttatcac ttcctttaac tgcaatagta tttttatcca ctacaatttc
    11221 aattccttct ggaatatcat aattaatagg atgagaaaaa ccaaggctta gttctaaaac
    11281 tttacctttt aaagctgctt tataaccaac tccattgatt tcaagagttt ttgaaaaacc
    11341 ttgagttaaa cctacaacga tattgtaagc taaagctctg taagttcccc aataagctct
    11401 actttgtctg tcttcacctt ttggagaaaa aagaatatta ttatctttaa tctcaacatt
    11461 tacatttgct ttagtatcaa gttcttttgc taaatttcct tttttaaatt taagcaaatt
    11521 tccttctaat tttacttcta ctcctgctgg aatagcaatc ggttgtttac ctatacgaga
    11581 catatttttc ctttttattt gtctaggata tttctacttt tttaaaagaa tggataccca
    11641 atgccataaa aagcagattt tttaccaaat ggtacataaa atttcgccgc caacacctgc
    11701 tttataagct tcatcattag ctaaaacgcc atgacttgtg ctaactacga tagtaccata
    11761 accattttta aaacgcttga tttcatcttt acctttataa acacgacgac caggcttaga
    11821 aattctttta agctcattga taacactctt acctttttca tcgtatttta aaactacatt
    11881 gataaatttc tttttatctt cttcaataac attaaaactc tcaatatagc ccttagcttg
    11941 aaaaattcca actaaagctt ctacaacttt agaatgtaaa agcttggttg tttcaagctt
    12001 tctcattcct gcatttctga tacgagtgag tgaatctgaa ataatatcat ttatcatatt
    12061 ttatccttac caacttgctt tcttaagacc tggaatcaaa ccttcgttgc ccatttttct
    12121 taagcaaact ctgcaaattc caaaatctct ataaaccgaa tgcggacgtc cacaaatttg
    12181 gcatcttgta taagctctaa ctttaaattt aggcttgcgt gccgcttttg caatcattga
    12241 ttttttagcc atcttacttt ccttttgtaa atggcacacc gataagttct aataactttt
    12301 gtgcctgttt gtcattttgt gctgttgtaa ctatagaaat gttcatacca tgagttctta
    12361 aaattttatc atactccact tctgggaaca tcaactgctc atcaagaccg aagttatagt
    12421 ttccgcgtcc atcaaaacca tctctactta aacctctaaa gtctttcacc cttggcaaag
    12481 caatggaaat taatttatca agaaaagcat acatattttc ttttcttaaa gttaccatta
    12541 cacccacagg aaaaccttcg cgaactttaa atcctgcaac tgatttttta gctttagtaa
    12601 tcacagcctt ttgtcctgca attaaagaaa tagtatctgc aacattttgc aatacttttt
    12661 gatctttagc caactcacca gcacctacgc tgataactac tttttcgatc acagggataa
    12721 gcataggatt tttaatatca aattctttaa ccaatgcagg tttaatgctt tgattatatt
    12781 tttcttttaa tctcatcatc gcttactcct gaacttttgc cacattggaa atatccattg
    12841 gcatttcttt attgataaaa ccaccatttg ggtttttctc actcggctta atagcttttt
    12901 tagcgatttt acatccttca actaccactt taagtgtttt tggatatacc gctaaaactt
    12961 tacctgtttt acctttatca tcacctgtga taaccttaac gctatcacct tttttgattt
    13021 ttaatttaac cgccattata atacctccgg tgctagtgaa acgattttca taaagccacc
    13081 atatctaact tctctgccca ctggcccaaa gatacgagtt ccgataggct ctcttttgtt
    13141 gtcaagaata accgcagcat tttcatcaaa acgaatcaaa gaaccattat ctctatgaat
    13201 ttctttttta gttctaacga taaccgcttt taccacttga ccttttttaa cttttccatt
    13261 tggtaaagct tttttaacag atgcaacgat tacatcacct acggtagcgt atcttctttt
    13321 gctaccccct aaaaccttga tacacattaa ttcttttgca ccgctattat cagcaactgc
    13381 aagtcttgta aaactttgaa tcattactca actcctgtag ctaatacaga ttttaagcga
    13441 aatgattttc tttttgaaag tggtctgcat tctactgcaa caacagtatc acccacttta
    13501 acttcatttc tctcatcatg aattagatat tttttaaagc gtttaacaat ttttctatat
    13561 cttggatgaa ccacttttct ttcaaccaaa acacttgcgg ttttttcacc agcgatttta
    13621 acaacaacgc cttgaatttc tcttttaaat gccattttct atccttatct taaagcgtta
    13681 attgctgtat ttattctagc aatgtctttt tttacttggc taatctcttt tggattagta
    13741 agttgcattg tttttagctt ttgttttaaa gtgaataaaa gcaccttttt ttcttttagc
    13801 attgttgcaa gctcagctgc tgttttatct ttaatctcag tatatttcat tttggctctc
    13861 tcttgtaaca aacttagttt taaatggaag tttatgcata gctaaagtca atgcttctct
    13921 tgccatttct tcgcttactc ctgccatttc ataaatgata cgacctggct tgatattcat
    13981 tacccattcc tcaacagcac ctttaccttt acccatacga gtttctaaag gtttttttgt
    14041 caaaggctta tctggaaaaa ctctaatcca agtttttcct tgtcttttaa caaaacgagt
    14101 taaagcgata cgcgctgctt cgatttggcg tgagttaatg cgtcctgctt cagttgcttt
    14161 taatgcaaat tcaccaaaag taaattctgt tccacgatta gcataacctc tgttacgccc
    14221 tttcatcatt ttgcgatatt tagttctttt tggcattaac atgattattt accccttctt
    14281 gtgcgtcttg gctttttagc tggagcactt tcttcagttt tttcaggttg catacctttg
    14341 tgcaatactt cacctttaaa gatccatact ttaactccta tgtttccata agtagttcta
    14401 gcttctgcaa aaccataatc gatttttgct cttaaagtat gaagtggaac gcgtccttca
    14461 agataccatt ctgttcttgc catttcagca ccgcctaaac gaccggaaac tgaaacttta
    14521 attcctttag cacctgcttt ttgcgcacct tggattactt ttttcattgc tcttctaaaa
    14581 gcaattcttt tttcaagttg agttgcaaca ctttcagcag caagttgagc tgaagctcct
    14641 gcttttcttt cttctttgat attgatattt acatctttac cgattaaatc ttgcaattct
    14701 tttcttaaat tatcaacatc actacctttt ttaccgatga tgatacctgg tcttgcagca
    14761 actacagtaa cgcgaagttt tttagcagtt ctttctacta aaatttggct aattcctgcg
    14821 taataaagtt ttctttttaa gaaagctctg attttgtaat cttcaccgat attttctact
    14881 aaatttgctt tagttggaaa ccatcttgat tcccagtttc tattgattcc tagtcttaga
    14941 ccaattggat taactttttg tcccattagc tttccttttt cgctgttgct tttttagtgc
    15001 ttgttgtttt tttagctgga gcttttgttg tagtagtttt tttagctact gtttttttct
    15061 cttcagcttt cacttccgct tttaccactt ctactaaaat atgtgaagtt ggttttctaa
    15121 tacgacttgc acttcctcta gctcttggtc taaatctttt taataccgca gctgcgtcaa
    15181 cacgacaact ttttacaatc acttcgtttg cttcaaagcc accatttgct actgcacttg
    15241 aaattgcatt tgcgatatat tttgcacctt tatttggcat aaattttaaa ctagccatag
    15301 ctaattctgc attcatcccc tgaacttctc tagcaatcaa tcttgcttta gttgaagata
    15361 atcttatgaa tttaattaat gctttactca tatcttatcc cttacttacc aattttcttt
    15421 tgcacagagc ctttatgccc tttaaatgtg cgtgttggag caaattcacc aagcttataa
    15481 ccgatgtgat tttcagtaat ataaactgga ataaagcttt taccattatg aacattaaat
    15541 gtaagtccta tcatatcagg agtaattgtg cttcttcttg accaagtttt aattggttta
    15601 ttatcattag cctttttagc agcgatgact tttttcatta catgatcatc aacaaaagga
    15661 ccttttttta gtgatctagc catcttactt tccttttctt cttgaaatta ttagcttatc
    15721 gctagccttt ttacgacgag ttttcgcacc tttggttggt ttaccccacg gagttactgg
    15781 atgacggcct gaatttttct taccttcacc cccaccgtgc gggtgatcta ctgggttcat
    15841 tgcagaacca cgagtttgcg ggcggatacc tctatggcga tttctacctg ctttaccgat
    15901 agttacatta gcccattctt catttccaac ttcgccgata cttgccatac attcagctaa
    15961 aacttgtctc atttcgccac ttgcaagtct taaaataaca tatttttctt ctttacccat
    16021 aagttgtgca taagcacctg cggaacggat catttgaccg cctttacctg gttttaactc
    16081 aacattatga acaatagtac ccacaggaat gtttttaagt ttcattgcat tgcctggttt
    16141 aatatcaagt ccgctttcag cagctgaaac tatatcacca acgcttaatc cacgtggttg
    16201 aagaatatat cttttttccc catctttata agcaatcaaa gcaattctac aatttctata
    16261 tggatcatac tcgattgctt ctactttgcc ttctataccg aatttacgac gtttaaaatc
    16321 aataattctg taaagttttt tagcacccgc ttctttatga cgacttgtaa ttcttccata
    16381 gctgttacga cccgcgtgtg ctggaagttt aacaagtagt gagcgtacac ttggtttagc
    16441 tgtaatatct tcagaactta aacctgtgat atatcttcta cttggagtat atggtttata
    16501 agttttaatt gccatcttaa gcctccgtat tttctaagct aacaccttca ggtagcttaa
    16561 catagaattt tttgtaattg tttctttgac ctaaacgacc tctaaaacgc ttaatttttc
    16621 catccattct taaggaattg atgctttttg gagttacacc aaaatactct tttaaaaccg
    16681 cttttaagcc tgttttagtc atttttggcg aagtttgaat aactacgaca ccttgctctt
    16741 gcaaattcaa acttttttct gtgtaaagta tagtctttat atcagtaata tctgccataa
    16801 ttatccctct tttgtaatag attctaacgc tgatttttcc ataataacag cattaaatac
    16861 agatactaaa taagcattta cttcagttac atcaactaca tagcaatttg ctaaatttct
    16921 gtaagctaaa agtgtttttt catctagtaa atctttaacg attaaagcat ctttgacgcc
    16981 aagtttttta atcacagcgt ttgcatcttt tgttttacca ctttcaatag ccaaagaatc
    17041 agcagtaaat aacacacctt tagctgcttt atctgctaaa gctctttcaa gcgccaatct
    17101 tttttgtttt ttatttactt tttggaagta gtttctttca tttgttggac caaaagcaac
    17161 cgcaccgcct acccaaacgt tagttcttgt tgaacccgct ctagcaccgc cacgaccttt
    17221 ttgtctccaa ggttttttac caccaccact tacatcactt ctacctttag tatgagctgt
    17281 atttgctctt aaacttgcaa ggtaagattt tacatacaag taaagattgt gtggatttac
    17341 ttccgcatat tttgaaggta aatcaagttc acctgctttt tctaatttat catttaaaac
    17401 aactacttta ctcattttgc aatccttatt ttacccatag caccattata acctggtact
    17461 gcacctttaa ctactaaaat tttattttca gcatcataag atacaacttc gtttttaacg
    17521 gtcactttag tatttccata gtgtcctgcc attttcatac ctggttgaac acgacctggc
    17581 cattctctat taccaataga tccatggcgt ctgtgaaatc tagaaccgtg acttgctgga
    17641 ccccctgcga agttatgtct cttcataaca ccgctataac ctctaccttt agtgttaaag
    17701 cttactttta aaatttttgc ttcatttaat ggagtttcat ctaaatctcc tgcttcagta
    17761 tttgctactt ctaaagtcgc aaatctattg tattctgcag aaagattgta ttttttttgt
    17821 tgtcctgcga cacatttatt acttgcttta ccttttggat atgctactaa agcctttccg
    17881 ccttcaactt cacatacttt tgcatttaca actcttagta aagttacagc gatacttgga
    17941 ttagtaattg ttctgctcat tccaattttt tctacaatat attccatatc ttatccttac
    18001 ttacccatag ctcttacttc aacgcttact tctggcgcta aatcaagctt cgttaaagaa
    18061 tcaactgtat ctggagtcgc tgctactata tctagcatac gcgcgtgaat tcttatttca
    18121 aactgctcac gagaatcttt gttaatgtgt ggagatttta aaactgtata gcgtttgatt
    18181 ttagtaggca ttggtatcgg acctctaata tccgcacctg ttcttttaac agcttctacg
    18241 attgctgcaa ctgttctgtc tagtactcga tggtcataag cttttagctt aagcctaatt
    18301 ctttccataa tatttccttt aaaaagaact cgttagttaa aaactaacca attttataaa
    18361 aattgaaatg agagtatata aaatcttgtt ttcaaagtca aggaatttga tgaaattttt
    18421 ctattatttt ccttttaaaa aggataaaaa tagaattttt agaatttaaa aattatcatt
    18481 attttttaaa tttttgtata taatggtcaa tatcttattt cattaaattt taaaaaatct
    18541 cttaattttt catattcgcc attttctaaa taacgatgtt ttcccgcctt caacatacca
    18601 agatctaaag ccccaaaagc aacacgctta agatccatga cttcaagatc aaaatgtcca
    18661 aaaaagcgtc taagctctct atttttacct tcatttataa ccactctaag cttagtatag
    18721 cctccacttg atccaaaaat ttcaaagtct ataaaaggag caaaactcat agaggtaatt
    18781 ttagtttttg catgtgcgcc ttttttttca tttttaatct caagtccatt ttgcatggct
    18841 tcgatgactt gtttgctcac cgtgccttta actttaaggt agtattctct ttctaaatcg
    18901 ctatgcatta aagcatcggc aatcacagga gaatctgtaa gcaaaagtaa gccttcactt
    18961 gcataatcca gcctacctac gctaagccaa gtactaaatt gtcttggcaa ggtatcatat
    19021 atagtttttc ttccacgatc gtctttttta ctgacaattt cacctttttg tttatggtag
    19081 attatcacgc taaattgcgt tcttttttgt actcttttac ctttaacaaa aactttatca
    19141 tcaaatttaa cttcatcgct taaaagggca attttgttgt ttatttttac taagccttgt
    19201 ttgataagtt catcggcttc acggcgtgaa tagcgggtgt tatgggatat aaatttatta
    19261 attctcattt gatcttcctt aaaaagggcg tttttgccct tttttacatt acaaaaatag
    19321 ttggaactat ggttgggtat tttttaatct ttctaaagat gtgttttctt aaaacttggc
    19381 ggatttgatt ttctaaaaat cttggatcat tgagtacttc atctttaaca ttgatgaaaa
    19441 attgtcctaa aacttcagcc atatctttgc taaaagcatg atcgtgtttg tcagctacta
    19501 gcccatagct aaatactctt ggtttgttga tcagtgtttt tgtagctttg tcaatttgtg
    19561 cgataataac tactatacca ctatctgcaa gtttttgacg atctataact acatcatcgg
    19621 cgatttgttt attgatttga ttatctacaa aaactttacc tgtttttacg gtttttatgc
    19681 gtttgacata tttttggcaa agttctactt gatcgccatc actcataaga taaatatttc
    19741 tttcagggat accgcacttc atcgctgttt ctttgtgttt ggtgatgtga ttgtattctc
    19801 catgaactgg taggaaaaat ttaggcttag taagggttag cataagcttt tgctcttcta
    19861 tactagcgtg tccgcttaca tgaatttcac taaattcttg atacgctact ttagctcctg
    19921 cttttaaaag atagtcaagc accgcagaaa cacttgcttc atttcctggt atggctttag
    19981 ctgaaataat cacttgatct gtaggtttga tttttataaa tttatgctca tcagttgcca
    20041 ttctataaag cgcactcatg gtttcgcctt gacttcctgt agttacgata agcacttcat
    20101 tgtctttata tttgcttact tcatcagcat cgatgaaaat ttttctatca agtttgatgt
    20161 agcctaattc catagtggta taaagatttc tttccataga acgaccgatc acacaaactt
    20221 ttctaccgta ttttaaacca taagtgatag cttgataaac gcggtggata ttagaactaa
    20281 aagtactcat gatcaccctg cctttggtac gtgcaaagat ttgatcaaaa gttggcccta
    20341 cggagctttc actttttgta taaccttctt tgtacgaatt tgtactatcg cttaaaagac
    20401 ataaaacccc ttcttctcca taatgtgcca aacgtcctaa gtctgttgga tagccatcga
    20461 ttggagtttg atcaatttta aaatcacctg tgtggataat cgttcctgct tttgttttga
    20521 tcgcaagtgc tgaagcatca atgatagaat gcgtgatgtg gatccactct atatcaaatt
    20581 cgcctatctc ataaacacgg cgtttttcta cagggcgaaa ccatttgcgt tctgctttta
    20641 agccatgttc ttcaaatttg tttgaaatca ttcctaaagc caaaggtgta gcgtagatag
    20701 gaaattggaa ttctttaaag aaataaggca ctgcaccgat atgatcttcg tgtgcatgag
    20761 tgatcactat accacgaatt ttatctttaa tttttcttac atagtcaaaa tcagggatga
    20821 taatatctac cccatgcata gttccatcag gaaaactcat acctatatct actataattg
    20881 catctttatt ggtttcaaaa acactgatat ttccaccaat ttctcctaaa cctcctaaag
    20941 gagtgatgcg gattttatgc tcgctagaat tattatattt taaagggtgt aagcggtttt
    21001 catgtgaaac acggttagct tctatgcatt ctgcaagagc gatttgccaa tcttcattac
    21061 ctgtgagttt tgaaggaaga ttgcgatttt tcttcttttt tttctcagtt ttattttctg
    21121 agttttcaga attttccttg ttggaatttt gatcaatttt tggagtatca ttttcatttt
    21181 gcaaagaatc agctaatttt tttctacgat ttttatattt atagcgttta ttgttttttg
    21241 aatttgagtt cggattttgt tcgtttttat ttatctcttt gttttcgtcc atattcatcc
    21301 tttaatttgt cataaatttt aaggtataaa tcaacgcaaa tttcatgtgg tctgatgttt
    21361 tcttttaagc caagagtgct taaaacttct aaaacttttg ctttatatgt ttttaaattt
    21421 cctaagagtt gttttctagg agctttaaaa caatctttta gaaaattttt gaaattttct
    21481 atttcgcaaa gttcatcaaa atccttagtt ttaatcaaac tcatcaccgc tgacataact
    21541 tttggtggag gattaaaaca ttgtggatca acatcaaaaa gtatttttct ttcgcaaatc
    21601 attgcactta aaacacctaa ggaagaaaac tcactatttc cttctttagc gcagaatttt
    21661 tcagccattt ccctttgtac cattacaata agccctagac aatttttatc ttctaaagct
    21721 tttaatataa tgtgacttgc aacataataa ggcaaatttg caaccaaaaa atatggtttt
    21781 tcatcaagac taggattaaa agcttcgctt gcgtcttgat ggatcaagtt aaattttcca
    21841 cattcaagtt ctttttgaaa tttctttttt aaaataggta tgagatcatt atcgatttca
    21901 taagctttta cttgagaaat ttttaaaagt tcttgcgtta aatcacctaa gccaggccca
    21961 atctcaatga tattgttcat ctctttgggt atggcttgga tgatttttgc taatacgctt
    22021 ttatcgatta aaaaattttg tccgtattgt ttttttgctt taaccataag aaataatttt
    22081 atctaaaaat tcttaattaa gtctttttag gtagaattat ttttgtaaaa tttcataagg
    22141 atcaaaatga ttgtttgtgc gggtggaaat gaaaattttt cttttgcaaa agccataggc
    22201 ataggtttgg ttgagtcagc ttttcatttg agtcaacttt acttcaaaga aaaaccatca
    22261 aaacttatat ttataggaac ttgtgggctt tatgataagg gagagatttt agaaatttat
    22321 agaagttcgc acgcttttaa tgtagaattt tctaaaattt cacatgcatt ttatactcct
    22381 gcaaaatatg aaatttgctt agaaaaagaa aatgtttctc gtgaaacaat aaaaatcaat
    22441 tcttcaaatt atatttgtca aaattcaaaa gcagcaaaag aattttcaaa attaggtttt
    22501 tttgcagaaa atatggaagc cttttctgtt ttgagcgtag ctaaaaattt aaatattgat
    22561 gcagagtgta ttttgtgtgc aacaaatttt tgcaatgaaa acgctcacga agattttata
    22621 aaaaatcatc aaaaggcaaa agaaaaatta gaagaatact taaaaaaata tcattatatt
    22681 taaaaattca aaaaaggaaa ataattttga aagagcttgt taatatttta gattttttac
    22741 ctgaagaatt aggagaaaaa atcaaaccga tgtttcgcgt gaaacaaatt tatcaatgga
    22801 tttatcaaaa atacgccaat aatttttccg atatgtcaaa tttaccaaaa gatctacgtt
    22861 tagaacttgc gcaaaatttt catttctctc ctgtaaaatg tgttaaaaat gagcaaagta
    22921 aagatggaag tataaaatat ctttttgaac tcgttgatgg tttaaggata gaaagtgtgc
    22981 ttttgcctat gaaagaagaa aaaatagacg cagaaggcaa aagaatttct catgcgagat
    23041 atactatctg tgtttcttct caagtaggtt gtaaaagtgg atgtagtttt tgtcttactg
    23101 ccaagggtgg tttgaaaaga aatttaagtg caggtgagat agtcggacaa attttatgga
    23161 tcaaaaaaca aaacaatatc ccttatgaac gccgtgtaaa tatagtatat atgggtatgg
    23221 gcgagccttt ggataatctt aaaaatgttt ctaaagcggt aaaaatttta gcgcaaaatg
    23281 agggacttgc tataagtcct cgccgtcaaa ccatcagtac tagcggtttg gcaaaacaaa
    23341 tcaaagaatt aggtcaaatg aatttaggtg ttttacttgc tatatcattg catgcggtta
    23401 atgatgagct tcgaaccgaa cttatgccta tcaataaagc ttataatatc gctgcgatta
    23461 tggatgcggt gcgtgaattt cctatagatc aaagaaaaag ggtaatgttt gaatatcttt
    23521 taattgatgg tatcaatgat aagcttgaac acgctaaaga attagtcaag cttttaaatg
    23581 gcattaaagc taaagtgaat ttaatactct ttaatccaca tgaaggaagt ttatataaac
    23641 gccctagttt agaaaatgcg attaaattcc aagatttact aagtaataaa ggtgtaactt
    23701 gtactataag agaaagtaaa ggacttgata tctcagctgc ttgtggacag cttaaagaaa
    23761 gggcaaaaga acaatgacaa tgctagatat tttcgaaatc atttttataa caactgttgt
    23821 aattataggt tttggtggaa ttgtttttgt agtaacaaaa gaaaaaaaat aattattaca
    23881 cttaatggtg tcaaggggg
//
LOCUS       DAQSLY010000013        22897 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.013, whole genome shotgun sequence.
ACCESSION   DAQSLY010000013 DAQSLY010000000
VERSION     DAQSLY010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.013"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            170..1513
                     /locus_tag="R2H98_000399"
     CDS             170..1513
                     /locus_tag="R2H98_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEE9023320.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFTLEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGNLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            1524..2174
                     /locus_tag="R2H98_000400"
     CDS             1524..2174
                     /locus_tag="R2H98_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEE9023321.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(2171..2842)
                     /locus_tag="R2H98_000401"
     CDS             complement(2171..2842)
                     /locus_tag="R2H98_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEE9023322.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(2848..3474)
                     /gene="upp"
                     /locus_tag="R2H98_000402"
     CDS             complement(2848..3474)
                     /gene="upp"
                     /locus_tag="R2H98_000402"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEE9023323.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAVLGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFIFIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(3471..4706)
                     /locus_tag="R2H98_000403"
     CDS             complement(3471..4706)
                     /locus_tag="R2H98_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEE9023324.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPIMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(4708..6099)
                     /locus_tag="R2H98_000404"
     CDS             complement(4708..6099)
                     /locus_tag="R2H98_000404"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEE9023325.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGKYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNVKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            6164..6979
                     /gene="salC"
                     /locus_tag="R2H98_000405"
     CDS             6164..6979
                     /gene="salC"
                     /locus_tag="R2H98_000405"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEE9023326.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(7016..8347)
                     /locus_tag="R2H98_000406"
     CDS             complement(7016..8347)
                     /locus_tag="R2H98_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEE9023327.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIQ
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAVLLDEKTRTRLHETAVKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(8349..8804)
                     /gene="accB"
                     /locus_tag="R2H98_000407"
     CDS             complement(8349..8804)
                     /gene="accB"
                     /locus_tag="R2H98_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEE9023328.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKIGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            8952..9512
                     /locus_tag="R2H98_000408"
     CDS             8952..9512
                     /locus_tag="R2H98_000408"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEE9023329.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            9561..10565
                     /gene="pseB"
                     /locus_tag="R2H98_000409"
     CDS             9561..10565
                     /gene="pseB"
                     /locus_tag="R2H98_000409"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEE9023330.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNASCMRYFIGDVRDKERLSTAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDKDNDFSINALGEKGQKVKDSFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            10567..11697
                     /gene="pseC"
                     /locus_tag="R2H98_000410"
     CDS             10567..11697
                     /gene="pseC"
                     /locus_tag="R2H98_000410"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEE9023331.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELITKIKLLKSHGIIKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKEYCG"
     gene            11690..12996
                     /locus_tag="R2H98_000411"
                     /pseudo
     CDS             11690..12996
                     /locus_tag="R2H98_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            12993..13784
                     /gene="legH"
                     /locus_tag="R2H98_000412"
     CDS             12993..13784
                     /gene="legH"
                     /locus_tag="R2H98_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEE9023332.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTELFKFGIP
                     LLSRNEFLQTILNCFFEVIGQEGTLIMPTFTYSFCKNETYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            13815..14045
                     /locus_tag="R2H98_000413"
     CDS             13815..14045
                     /locus_tag="R2H98_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEE9023333.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
     gene            14042..14935
                     /locus_tag="R2H98_000414"
     CDS             14042..14935
                     /locus_tag="R2H98_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEE9023334.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            14928..15344
                     /locus_tag="R2H98_000415"
     CDS             14928..15344
                     /locus_tag="R2H98_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEE9023335.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            15341..16903
                     /locus_tag="R2H98_000416"
     CDS             15341..16903
                     /locus_tag="R2H98_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEE9023336.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            16893..17954
                     /locus_tag="R2H98_000417"
     CDS             16893..17954
                     /locus_tag="R2H98_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEE9023337.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     AIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            17954..18175
                     /locus_tag="R2H98_000418"
     CDS             17954..18175
                     /locus_tag="R2H98_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEE9023338.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(18189..19421)
                     /locus_tag="R2H98_000419"
     CDS             complement(18189..19421)
                     /locus_tag="R2H98_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEE9023339.1"
                     /translation="MLINQSFEIDSCDDVELNIKRTSKLEYRISYDDEKEIKAIVFII
                     GGYGANANIYFLDSYRNYIAKNFDVVAVHVFYHCFCQRRSDVEKYSTLADFTKDDLKL
                     IEKVLRKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGVMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWTRKENSPYFFNN
                     ENYFIRTLLNKDHLILQSQKNKNIIYVSYHSDKDPLTPANFKQQTMQILKILGYDVSL
                     NLIDENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQGRKSFMQENSISYPCGNK
                     VFIFKDVGDKFELVIKKD"
     gene            19482..20990
                     /locus_tag="R2H98_000420"
     CDS             19482..20990
                     /locus_tag="R2H98_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEE9023340.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNNKPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQISVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHSSIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            21030..21257
                     /locus_tag="R2H98_000421"
     CDS             21030..21257
                     /locus_tag="R2H98_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEE9023341.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(21254..22324)
                     /locus_tag="R2H98_000422"
     CDS             complement(21254..22324)
                     /locus_tag="R2H98_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEE9023342.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(22346..22888)
                     /locus_tag="R2H98_000423"
     CDS             complement(22346..22888)
                     /locus_tag="R2H98_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEE9023343.1"
                     /translation="MPFLACILGREMNQGEFYFEGSGYRLYCFVYKYWNRNMNSSYYF
                     GDENYLIRAVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQNKIELYKCYQELGYDA
                     TLHLIKDENDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKLQGRKSFMQENSISYPC
                     GNKVFVFKDLEDKFELEMIN"
BASE COUNT         8038 a         3726 c         3388 g         7745 t
ORIGIN      
        1 ctgctgctct accgactgag ctatccaacc acaatgtttg ataaagtaaa aatgtaattg
       61 tatctttttt tctttaattt aagtttaaat acaaaaataa aattttattt cccttaaagt
      121 tttaataaga tagaataccc gctttagatc attatcaaat ggaaattttt tgaaacaatt
      181 tggactagat agacgaactt ttaaaatttt actagctggt tatattatta ttgcattgtt
      241 tggggcttta ttgctacatt caagctgggc acatacaact cctattgatt ttttggatgc
      301 cttttttaca agcacatctg ctgttagtat gacaggatta gtagttaaga acactgcggt
      361 tgattttacc ttagcaggac aaattattat cttagctttg gtgcaaattg gaggcttggg
      421 atatatgggt ataggtttat ttgtttatat actcatacgc aaaaaagttg gttttagtgc
      481 aagaaattta ctaaaagagt ctttatttta tccatcaatg gatggtttat ttaaattttt
      541 taaaaaggtt ttgctgttca tttttactat agaattgata ggcgctatac ttctcaccat
      601 gcgttttacc cttgaaatga attttaagaa agctttatgg tttggaattt ttcattctat
      661 tagcgctttt aataattctg gatttactat atttgaacat ggacttatag cttataaaca
      721 tgatatagca attaatctta ttatcacttc tttgattatt attggagggc ttggatattt
      781 tgttttggtt gaattatact tttttcaaag aaaaaaattg caaaatttaa gcctacatac
      841 aaaaatggtt gttgttgcaa gtatttttct tattttctct tcaacgctta ttatttttgc
      901 ttttgaatac tcaaatcctc aaactatagg acatttttca ttttttgata aaattttaag
      961 ctcatatttt atcgctatta attaccgcac agcaggattt aataccttag atatgggaca
     1021 tttgcatgat gcaagcttat tttttggatc attgtttatg gttattggtg gtgcaccagg
     1081 tggaacagct gggggtatga aagtaacaac tgtaatggtt ttattactct atgcttattg
     1141 gagtatccgc gatggaagag ttagaatttt tggacatgaa attccaagag aaactatatc
     1201 taaagctttt attatagctg taggttcagc tgtttatata gtaatagctg ttattttgct
     1261 ttccttgcta gagtcaaaat ttgattttat agccttgctt tttgaaactt cttcggcttt
     1321 tgcaaccgta ggaatttcag taggaaatgg tggaaattta tctttatgcg ctttgtttag
     1381 tgatcctagc aaggtgatta tcatcattat gatgctaagt ggtaggatag gtgtttttgc
     1441 ttttttactc tcggtattca aacaagacaa agctattcat ttaaaattcc ctgaaggaaa
     1501 ggttaattta taaaggtaaa atcgtgaaaa atcttaatta tggaatcata ggacttggaa
     1561 aatttggatc agttgtagca gatgaactca ttgctggagg tcatactgtt atcgttgcgg
     1621 ataaagatga ggaagcttta aaaagtatac aaaatcctcc aagctatgct tatattttag
     1681 attctacaaa tatttcagcc ctaaaagaag caggctttca tgatgttgaa gttgttattg
     1741 ttagcatagg agaaaatgtt gaaaaatcaa tccttactct tatggcgctt aaagatatag
     1801 gtgttaaaaa tatcattgct aaagcaacct ctaatatcca tggtcaaatt ctttctaagt
     1861 taggtgcaac aaaggttatt tatcctgaaa aagaaagtgc taaaagacta gtaaaagaat
     1921 ttttaactaa agatgctgat tatgaagttt ttgatctttc agcaaatact atacgagcta
     1981 ttaagatcaa tatagatgaa aaattagcag gaaattcttt aaaacatgta gcacaaaata
     2041 tgaaagtgat ttcttataaa aaattaaata gcgactggga aatactacct gatttagaaa
     2101 ccacgacagt ttatagtgga gatgttgtaa ttctccttgg aacagttaag gaacttagag
     2161 aatttgaaca ctaagcaaga tttaaagcct tgcaagcctt tacaaaacgc tttaaggctg
     2221 ttttttcttt ggtagaaatt ttatgatata taacttcatc taaataatat ctaacatctt
     2281 ttatatctaa atcccttgtt ttggcatatt tttgaagtat ataataggga attttaatct
     2341 ttgtttttgg aaattttttc aaaatttgtt tatataaagc ttttttttgc acacaagaaa
     2401 atctagcaaa aacaaaaggc aatcctgttt tttcgtgcca ttttgcacat aaatcgatat
     2461 atttagaagg atcttttaga taaagcttta aagccttatc acctataatt acttttccat
     2521 cttgttttaa tactttagcc agagcgtttg aagttgctga acttggatct ttggcatttg
     2581 atgtattttt ttctactaat acacttaaaa ctcttttatt agcacaaata cccaaatcta
     2641 aatttttata tttttttcta gcactttcta tgcttgaaat gatagctgca tcaattcttc
     2701 tataaaataa atctttattt agcttacttg gaactccttt tttatactcc atacttgctt
     2761 tataaccatt aggtagggga tatttcttaa gatatatatg taaaggtaaa agattaatat
     2821 aatcaatttt tccaaaaatc atctctttta aagagtgtta aacactctat ctcctgcatc
     2881 tccaagccct gggataatat aacctttttc atttaaacct tcatcaatac aagccacaaa
     2941 aacttctaca tcatcatgca tttggctaaa ttttttcaaa ccttgtggag cagcaagtat
     3001 gaatataaat tttatttttt taactccttg gctttttaaa aaattacaag cctctatagc
     3061 agtcccacct gtagcaaaca taggatctat aacaatagca gtgcgttttt ttgcatcttt
     3121 gggaagtttt tgaaaataaa aatccgcctt taaagtttct tcatttctca caaaccccaa
     3181 aaacccaaca cttgcatcag gaatcatctt aaaaacactt tcaagcattc ctaatacagc
     3241 tcttaaaata ggacaaatca taatcttttc atcaagtttt tttactgtag ttttttgtat
     3301 aggtgttgaa atttcaattt cttttaaaga aaaatcttta ctcgcttcaa aaagcaaaaa
     3361 agatgaaatt tcatcgatta acatacgaaa ttgaaagggc tttgtctctt tagcccttaa
     3421 aattcctaat ttatgttcga tcaatggatg attgatacaa tgaatatttt tcattttaag
     3481 ctttcaaaat aagctttctc atcaaaattt ttcaccttag ccacaccatc ttttaccgca
     3541 gctgctgcta cagctgtact tactgcagct tttactcttt catcaaaagg ttttggtata
     3601 acataatctc ttccaaattc taaagtgctt aaattataag cttttttaac cgcatcgctt
     3661 acaggaagtt ttgcaagatc tgctaatgct ttagcagccg ctactttcat attttcagtg
     3721 attttacttg cacgcacatc taaagcccca cggaaaataa aaggaaaacc taaaacatta
     3781 ttgatttgat ttggataatc acttcttcct gttcctacaa tcgcatcttt tctaagtcta
     3841 gctacatctt caggcatcac ttcaggaata ggatttgcca aagcaaaaat cacaggatct
     3901 tttgccatgc ttaaaaccat ttcatcatca agaatttttg gtgcactaag tcctaggaaa
     3961 acatcagctc cttttaaaac ttcttttaaa gtcttttcct tagaatcaac agcaaattca
     4021 agcttttgag gagttaaatc atttctatct ttagaaatca ctcctttgct atctactaaa
     4081 ataatatttt cgacccctaa atttctatac attttagcac ttgctatacc tgcagcacct
     4141 gcaccactta caactacttt gatgtcttta aattttttac cacttatttc catagcattc
     4201 ataagtcccg cagttgaaat aatagccgtt ccatgttgat catcatgcat tataggaatt
     4261 cctaaatctt gcaaagccgc ttcaatttca aaacattttg gcgcagcaat atcttctaaa
     4321 ttgatcccgc ccacagttgg agccaaagac ttgcaaaaat ttacaatctc ttctatacta
     4381 tgaacatcaa tttctatatc ataagcattg acatttgcaa attttttaaa caaacaagcc
     4441 ttaccttcca taacaggttt tgaagcctgt gctcctatgt ttccaagtcc taaaacagca
     4501 gaaccatcac taactatagc tactaaatta gccttatttg tataagtata agcaagctca
     4561 ttatctttag cgatttcaag acaaggttct gcaactcctg ggctatacgc caaagataga
     4621 tcatggcttg tagccattgg cttacttggt acaatatcaa ttttcccacc taaatggtat
     4681 tttaaagctt cttcttttaa attcatttta ttttcctcta acttttaaaa aattttctat
     4741 tctttttttg cactcatcaa cctctaaaaa ttctaatact tcaaaaatac taggacttac
     4801 cgcactccct gttaaagcta tgcgtatagg ctgagccaaa tcttttaact ttgcttcttt
     4861 tttttctaaa aaatcatttg taaaatcttc aaaatcttta cctgtttttt gatctttaag
     4921 tgtattagca aatgcttgga gcaattctaa attatttttg ttaataaatt tttgtactgc
     4981 attttcatca taattttgcg gcgcattaac tatacttttt gcaccattga taatatcatg
     5041 caaggttttt gcacgctctc ttaataaatc aagtaaaaat cctgcctttt cataaacaga
     5101 taaatcaaag ccaagatcct taagctgacg gttaatctct tcaaaaggca aagttttaat
     5161 gtaatgagcg ttaagccatt caagcttttt aacattataa caagatgcgc ttttattaat
     5221 atgataaggg tcaaaaagtt ttttcaaatc ttctaatgaa aaaacctcat catcaccatg
     5281 gctccaacct aaacgcacaa gaaaattaag caaagcttga ggtaaaattc ccatttcttt
     5341 gtattccata acatcagttg ccccatgtct ttttgaaagc tttttaccat cttctccatg
     5401 tatcatagcc acatgaaaaa atttaggaat tttaaaaccc aatgcctcat aaagcacaat
     5461 ttgtttagga gtatttgaaa gatgatcatc tccgcgaatc acatcactta cccccattaa
     5521 agcatcatca ataacaacag taaaattata agttggagtt ccatcacttc ttgcaatgat
     5581 aaaatcatcc attatatcct ctgctttaaa tctcacctcg cctttaaccc catcttcaaa
     5641 aacaatctcg ccactttgag gcgctttaat acgcacaaca ggttctatac cctgaggtgg
     5701 cgtgcctgta aattctctat attttccatc atatcttggg cgttctttgg cggcttcttg
     5761 cttggcacgc aattcttcta attcttcttt actcatataa caataatacg ccttgccttc
     5821 atctaaaagc tttttgacat attctttata aagatcaaaa cgctctgatt ggtaagttac
     5881 ttctccatca tgttctaaac cgcaccattt aaaagcttcg ataattgctt tagtagcttc
     5941 tttggaattt ctttttaaat ccgtatcttc aatacgaagt aaaaaatttc caccattttt
     6001 tctagcgtat aaataattat aaagagctgt tctaagtcca cctatgtgca aataccctgt
     6061 tgggcttgga gcaaaacgcg ttgtaagttt ttcgtgcatt ttttgccttt tcttaaattt
     6121 ttattgatat aatgcgatat ttatacttaa ataaaggttt gaaatgaaaa aaattttatt
     6181 aagttttgca ttttttgcaa gtttagctag tgcaaatacc attaatgcta tagctgtagt
     6241 tgtagacaaa gagcctatca caacttatga tatagatcaa actatgaaag cacttaaaat
     6301 tgatagaaat aaagctttag gcgtactcat caatgaaaaa atggaaattt cacaaatgaa
     6361 acaactaggt attgtagtca atgatctaga gcttgatgat gctataaata aaatgcttgc
     6421 tcaaaacaaa acgactttaa atgctttcaa agcaaattta aaatccaaaa atcaaagcta
     6481 tgaacaattt cgtgcaaatt ttaaaaaaga tttagaaaaa agaaagcttt atgaaaaaat
     6541 cgcaagtatg gcaaaaactg attttagtga tgatggagca aaaaaatttt tcgaacaaaa
     6601 taaagataaa ttcacttttt atacacaaat taatgcaaat atttatctat caaacaatcc
     6661 tcaaacttta gaaaatatca aaaatacaaa aaaaacaatc cttaaaccac aaaatgcatc
     6721 tttaaacaca agtaatgccg atccaagact tttagggctt ttatcacaaa ttcctgttgg
     6781 aggcttttcc cctgttttaa atggaaaaaa tggctatgaa ctctatgaag ttaaaagcaa
     6841 agatggggca caaactcctg aatatgaaca agttaaaaat gaagttttaa acgcttatgt
     6901 aagcgaacaa agacaaaatt tcatacagga ttattttgat aaactccgct ctaaaatcaa
     6961 tatagaatat ttaagataaa aattacaatt aaaatttccc tttaataggg aaattttaat
     7021 gtcttgcaag ataatttgta tcgtaattat tattaataaa atcaggattt tccatcatag
     7081 aaagatgaaa atctttggtt gtttttatcc cacttataag caactcatct aaagctactt
     7141 tcatttttgc aatagcttta ttgcgatctt ctgcccaaac tacaagtttg cctatcatag
     7201 aatcataata aggaggcacg ctatagtctt gataacaatg actttccatt ctgacattgc
     7261 gtcctgctgg tggaatgtat ttagtaatct tacctggact tggcaagaaa gttttggaat
     7321 cttcggctgt gattctacat tctatagaat gcccatttaa tttaatactt tcttgagatg
     7381 gtaaagcata accttctgct actttaatca tttgttctat gatatcaatc ccacttacca
     7441 tttcacttac acagtgttca acttgcaaac gcgtattcat ttctataaaa taaaaatcca
     7501 aatttttatc taccaaaaac tcaaaagttc ccgcaccttc atagcctata gctttagccg
     7561 ctttaacagc agtttcatga agcctagtac gtgttttttc atcaagtaaa actgcagggg
     7621 actcttctat aagtttttga tggcgtcttt gcatagaaca atctctttcg cccacatgga
     7681 tcacattacc aaaactatct cctataacct gcacttctat atgacgtgga ttttgtatgt
     7741 atttttccat atacatagtt ccatcaccaa atgctgtcat agcctcactt tcagccgacc
     7801 aatacgcttt ttcaagatct ttttcatttt caaccacacg cataccacga ccaccaccac
     7861 ctgcggctgc ttttaaaatc acaggatagc ctatttcttt ggcaagtttt ttagctgctt
     7921 cagctccggc taaagctcca tcacttcctg ggattacagg tacgcctgct ctttgcatta
     7981 cttgtttagc ttttgattta tcactcatta aattcatagc ttctacagaa ggacctatga
     8041 attgaatgtt atgtttagca caaatttcaa caaaattttg attttcgctt aaaaatccat
     8101 atcctggaaa aatcgcatct gcttcagcaa tttcagctgc tgtaataata gctgggatat
     8161 ttaaatagct ttcagaactt cttgctttgc ctatacaaat gcttgcatca gcgtatttta
     8221 aatacaaagc atctttatct gcttcagagt acacacaaat tgctttttta cccatttctt
     8281 taatcgttct taaagcacgc agtgctattt ctccacgatt agcaattaat atgcttttaa
     8341 tttccatttt ataatttctc caccgcaaat aaaggcattc caaattctac aggctgacca
     8401 tcagcaacta aaatttcagc gatcctacaa tcaaattccg cttcaatttc attcatgatt
     8461 ttcatcgctt cgataatagc tatagtatcg ccttttttaa ccgtactacc tatttttaca
     8521 aaaggtgctg cacctggact tggagcttga tagaaagttc ctaccatagg gctatttata
     8581 cttggtttgt ttgattttac actttgacta ggttgagctt cgtttacaac gcttacattg
     8641 ataggttgtg gagctggaac tggaggacaa acaggagctg gaacatcgca gcacatatct
     8701 ctttcaagtt ctatttcaaa accatcttgt tctttgatct taattttact aatatttgct
     8761 tcagcaaaaa ggtttactaa ctctttaatt tcttcttttg tcataaaatt ctcctacaaa
     8821 atttaagaac ttaaccttgt attatataaa aaaacttgaa atttaacttt aaaaaagaaa
     8881 aaaatcataa aaaatataga ttttttaggt tataatcctt acaaacaatt acaaatatta
     8941 aaaggttaaa aatgggctta aaagcggata attggataag aaaaatggca ttagaacaca
     9001 agatgatcga accattttgc gaagcaaata taggaaaagg tgtggtaagc tatggacttt
     9061 caagctatgg ttatgatata cgcgtaggac gtgagtttaa aatttttacc aatgttaatt
     9121 caactgtagt ggatccaaaa aatttcgtag aagaaaatgt agtagatttt gaaggtgatg
     9181 tatgtatagt tcctgcaaat tcttttgccc tagctagaac tatagagtat tttaaaatgc
     9241 ctgatgatgt cttagctatt tgtcttggca aaagcactta tgcaagatgt ggtatcatcg
     9301 tcaatgttac cccttttgaa ccaggttttg aaggacatat tactatagaa atttcaaata
     9361 ctacgccttt acctgcaaaa atttatgcta atgaaggcat agcacaagtg ttgtttttac
     9421 aaggtgatga aaaatgtgac accacttata aagataaaaa aggcaagtat caagctcaaa
     9481 cgggcataac cttgccaaga attttaaaat aggaacactt gttgctttaa ttttaaaaaa
     9541 cttaagcaaa ggaaggcaaa atgtttaaca aaaaaaatat cttaatcaca ggcggaacag
     9601 gctcttttgg aaaaacctat actaaggttt tgctagaaaa ttataaacct aataaaatca
     9661 tcatttattc tcgtgatgag cttaaacaat ttgaaatggc aagcgttttt aacgcttctt
     9721 gcatgcgtta tttcatagga gatgtaagag acaaagagcg tttaagcact gctatgcgtg
     9781 atgtggattt tgttatacat gctgctgcga tgaagcatgt gcctattgct gaatataacc
     9841 ctatggaatg tataaaaaca aacatccacg gcgcgcaaaa tgtcatagat gcttgttttg
     9901 aaaatggggt taaaaaatgt atcgctctta gtacggataa ggcttgcaat cctgtaaatt
     9961 tatacggtgc aaccaaactt gcaagcgata agctttttgt cgctgcaaac aacatagcag
    10021 gtaacaagca aacacgcttt ggtgttacaa gatatggcaa tgttgtaggt tcaagaggat
    10081 cggtagtacc tttctttaaa aaactcatta gcgaaggagc taaagaactt cctatcaccg
    10141 atacaagaat gactcgtttt tggatcagcc ttgaagatgg agtgaaattt gtactgagca
    10201 attttgaaag aatgcacgga ggagaaattt tcatccctaa aattccttcg atgaaaatca
    10261 ccgatctagc ccatgctcta gctcctaatt taagccataa aatcataggc ataagagcag
    10321 gagaaaaact acatgaaatc atgatttcaa gcgatgatag tcatttaacc tatgaatttg
    10381 aaaactacta tgccataagc cctagcatta aacttgtaga taaagataat gactttagta
    10441 tcaatgccct aggcgaaaaa ggacaaaagg taaaagatag tttttcttat agttcggata
    10501 ataatccttt atgggcaagc gaaaaagaac ttttagaaat catcaatcac accgaaggtt
    10561 tttaaaatgc ttacttattc tcatcaaaac atcgatcaaa gcgatataga tgcgcttaca
    10621 aaagctttaa aagatgaaat tttaacaggg ggtaaaaagg tagatgaatt tgaagaagcc
    10681 ctttgtgaat atgtgggcgt aaaacacgct tgtgtattaa actcagccac ttcagccctt
    10741 catcttgcct atacagcact aggcatcaaa gaaaaaatcg ttttaaccac tcctttaacc
    10801 ttcgctgcta cggctaatgc ggccttaata gctggagcta aggtagagtt tatcgacatt
    10861 aaaaacgatg gcaatattga tgaaaaaaaa ctagaagcaa gacttttaaa agatagtaaa
    10921 aatataggag ctattagcgt ggtggatttt gggggaaata gcgttgaaat agatgaaatt
    10981 tcaagccttg ctaaaaaata caatatccct ttaatcgatg atgcaagcca tgctttaggt
    11041 gccttatata aaagtgaaaa agtaggaaaa aaagccgatc tttctatctt ttcttttcat
    11101 cctgttaaac ccatcactac ttttgaaggc ggggctgtgg tgagtgataa tgaagagctt
    11161 atcaccaaaa tcaagctttt aaaaagccat ggtataatta aaaaaaggct ttgggatagc
    11221 gatatggtag aacttggcta taattaccgc ttaagcgatg ttgcttgtgc tttagggata
    11281 aaccagctta aaaaactcga tcataatctt gaaaaaagag aagaaatcgc aagtttttac
    11341 gataaagaat ttgaaaaaaa tccttatttt tccacgataa aaatcaaaaa ttataaaaaa
    11401 agctcaagac atttataccc tatcttgctt tttcctgaat tttattgtca aaaagaagaa
    11461 ctttttgaaa gcttacttca tgcaggaatt ggcgtacagg tacattataa accaacttat
    11521 gagtttagtt tttataaaaa actcttagga gaaatcagac tccaaaatgc ggataatttt
    11581 tacaaagccg agcttagcat accttgtcat caagaaatga atctaaagga tgcaaaattt
    11641 gtaaaagata ctttatttag cattcttgaa aaagttaaaa aggaatattg tggataagct
    11701 agactttaga agtcaagatt ttagccaaac tggaaaggct atgtatgaac tagcttgtga
    11761 actttttccc atccctcgaa gtatcacagg gcaaggtttt agagctagct tagaaatttt
    11821 aaataaaact ctgggggggg gatactcaaa tttcactcta taaaaagtgg cacaaaggtt
    11881 tttgactgga tagtccctga tgaatggaac gccaaagaag cctatatcat cactccagaa
    11941 ggagaaaaaa tttgtgattt taaaaagcat aatttacatc ttctaaatta tagcgaagct
    12001 atcgataaag aaatcgaact tgaagaactt caaaatcatc tttactccat agaagaaatg
    12061 cccgatgcta ttccttatgt aacgagttat tacaaaagac gttggggatt ttgtctcacg
    12121 cataatgaaa gaaaaaaact caaaaaaggc aaatacaaag tctatatcaa tgcgaaacat
    12181 gatgaaaatg gggttttgaa ttatgctgat tttatcctac ctagtacgca aaattcaaaa
    12241 gatgaaattt taatttcaac ctatctttgt catccttcca tggcaaataa cgagcttagt
    12301 ggccctgtgg tggctatttt cctagcaaaa tggcttttga gtttaaaaga aagaaaatat
    12361 aattaccgct ttgtcatcat ccctgaaacc ataggctcta tagtctatct tagcaaacat
    12421 ttagagcatt taaaaaaaca tgttaaagca ggctttgtgc tttcttgctt aggcgatgat
    12481 catgcttact cactcataca tacacctaaa gaaaacactc taagcgataa agttgccttg
    12541 catacgctta aaaataaaga aaatttcaaa gcttttagtt ttttggatcg tggaagcgat
    12601 gaaagacaat acaatgctcc gcttgtaaat cttggcattg taggagtatg tcgcacaaga
    12661 tacctagaat acgaacaata ccacaccagc aaagatgatc tcaattttat ctctgaaaaa
    12721 ggtttaatgg gtggacttca aagcatgcaa gaaatgattt taaatctaga aatcaacgcc
    12781 gtatataaaa acaccatagt atgcgagccc aatcttggca aaagaggact atatcatacc
    12841 cttagcactg ccaatgacat tcctttagct tgtaattttc tagcttactg tgatggagag
    12901 aatgatatca tcgatatagc caatatctta aatatgcaag cttatgaatt taaagaactt
    12961 ttgaaaaaaa taaaatttta tggactagta aaatgaaata ttttttagaa cacaatgaca
    13021 aaaaatactc cgataaggat ttaatagatg ctttttatca actaggtata aaaagaggcg
    13081 atattttatg tgtacataca gaacttttta aatttggcat acctttgctt tctagaaatg
    13141 aatttttaca gactatactc aattgttttt ttgaagttat aggtcaggaa ggcactttga
    13201 tcatgccaac ctttacgtat agtttttgca aaaatgaaac ttatgacaaa ataaattcca
    13261 aaacaaaaat gggagcatta aatgaatatt ttcgcaaaca aacaggagta aaacgcacaa
    13321 acgatcctat attttctttt gctataaaag gagcaaaaga agaattattt ttaaaagata
    13381 caacaagctg ttttggggaa aattgtgttt atgaggtttt aaccaaagag aatggaaaat
    13441 atatgacatt tggaggccaa ggacacacac taacacatta tgcagaagaa caatttaatg
    13501 tattttacag atatcataaa attttctctg gaattttaat tgatgaaaac aatatatcat
    13561 acaataaaac cattagttat tatgttagaa aacttgacat atcttctgaa cccaatttaa
    13621 ttaacattat caatattgtt aataatacta aaaattttaa aaaaaacaat tttgcaggag
    13681 atcatataaa tatttacaac gctaaagaat atatagaaat tttatggaaa aaattagata
    13741 taaaccaaac aattctaata gaaaattatg atacaatata ttaattttca acattctcaa
    13801 gaaagtggta tacaatggaa aaacaatttt atgaaatttt agaaaatata cttgaaacca
    13861 aagtagatga aaatacaaat ttaagcatgg aaaactgcaa gaactggact tctttagctc
    13921 atattgatat catcatgagt ttagaagaag aatttgaaat caaatttaac aaagaagatt
    13981 taagtctctt aaaatctcaa agcgctttac tagaaaaaat tcaaacccta aaggcagaaa
    14041 aatgaaagaa aatattgaaa aattatttca agccatcgct caaaaaaatc ctatccattc
    14101 taaatatctt aaaaaaattg aattttcaca agaagacgaa gaagaatttg ataaattaat
    14161 ttcttattat attcaagatg gtatcagtat aaaagaacaa tgcgattgtt atttattgat
    14221 ccttaacgat actttagaag aaacaaaatt tttcatagaa aatggggctt atcgttattc
    14281 tagctttgat gaagttaagg ataaagttta ttttaatgaa agctatatga aacaatacat
    14341 gataggccta gctctttctt cttttgtttg gatagctcat attaaagtga gaaagtattt
    14401 ttcacaatat ttgcaaaatt tcactccaaa aacaacttat tttgaaatag gccctggcca
    14461 tggagaatac ttcgcaagag cagttaaaag tggtaaattt tcagcctttt atggacttga
    14521 tatctctcca acgagttgcg aacttactca aaaaatggta aaacaacaag taggaggatt
    14581 gattacaaaa tgcgattttt tatgtcaaga tttttttact tatgattttg ataaaaaagc
    14641 tgatttgata gtaattggag aagtgctaga acacgtagaa aaacctcttg aatttcttaa
    14701 aagatctaaa gaacttctta gcgatggagg agaaattttt gcaactatcc ctatcaatgc
    14761 tcctgctatt gatcatattt atttattttc ccatcctgat gaagttaaag atttgataga
    14821 aaaatcaggc ttaaaattta aagcttatga atgttttatg gcaaatgatt atagtttgga
    14881 aaaagcattg aaatttaaaa atgctatcac tatggcagta gttttaaatg cttaatacaa
    14941 cactcaattt accccttcat catataggcg tggcttgtaa aaatttagaa aaagaaaggg
    15001 aatgtttttt taaactaggt ttttataaag aatcagaatt tatagatgaa aaacaagggg
    15061 taagaggcga atttatcatt ccttgtaatg aagcatttcc acagtataga tttgaacttt
    15121 tgcaaaattt aaacgataaa ggaccactag atagctattt gaaaaataat accaaaatgt
    15181 atcatttagc ctatgaaagt aaaaatatcg cccaagattt aattcttttg gaacaacaag
    15241 gaggcatttg tattgttcct attatgcaag caagctattt tgctaaactt tgttttatca
    15301 tgatgccaaa taggctttta atcgaacttg tggagctaaa atgaatcttt tttcacccca
    15361 tttaaaacgc aatgagctta taaaattcgc caaagaatta gactttagta aaagtcaaga
    15421 tcttcttatt aatgtccata gaaatcatgc ttttgaagga gtgcaaagta tcattgctcc
    15481 ttttttacat tttgctaatt taagagctga gtttaatttc agctcttatg atgatagctt
    15541 gagttttgat aactttaaag aagctagttt agaactttta tggctagatt taacccgcta
    15601 taaaaataat gtgcaaaatt ttatagaaga aagactttta gaactaagaa aaatttcaca
    15661 aaaccctatt ttagttctta gtttaggaga atttaaaaca gataaaaaaa ttttaaattg
    15721 tgaaattttt aacatagaaa aactcataaa agagtatttt gatgaagaag atattttaga
    15781 cttagctaaa gaagaactta caggctctaa gcttaataat aaagccttga tttttttagc
    15841 acaaatttta ggacttagcc tcatccctgc actcgtaaaa cccgctctta aagctcttgt
    15901 acttgatctt gataatacct tgtatcaagg aattttaggt gaagagggta tagataatct
    15961 taatttaagt cctttgcaca aaaccttaca agaaaaaatt aaaactttta aaaaacaagg
    16021 gtttttactt gccctagctt caaaaaatga agaaaaagac gcaaaaaaac tttttgaaat
    16081 aaggaaagat ttcatcttac aatgggatga ttttgatgct agaatgatta attgggagcc
    16141 aaagggtgaa aatatcttaa aaattgctaa aaaatttaat ataaatacta acgctatgct
    16201 ttttatagat gataatatcg ccgagcttga aaataccaaa tttacaggcg ttaaaacact
    16261 tttatgcgat gaaaatatac tttataaaat caaacttttt cctaatcttt taaaactttc
    16321 aaataccaaa gaagatcaaa ttcgtgccaa agatatagca gccaatgctt taagagaaga
    16381 gcttaaaagc ttaagcgatg aagaatattt tcaaaatctt gaaatcagct taaattttag
    16441 caaaaatgat ctacaaaata tccctcgcat tagcgaactt ttaggcaaaa ccaatcaatt
    16501 tatcgctaat tacacacgct taaatcaaga aaaagtcgca caacacatgc aaaaagaact
    16561 cattgtaagt gtgagtatga gtgataaatt aagcgatagt gggattatcg ccatttttgt
    16621 tttttcttgt aaagaaggaa atttatttat cgatgatctt tgcatttctt gtagggcttt
    16681 aggtagaaaa cttgaaacta gaatgttttt taaagccttt gaactagctt tacatttctt
    16741 tgatcttaaa aacaataatg caaggcttta ctatcaaaaa ggcgaaagaa atatgccatt
    16801 tttgagcttt ttagaacaaa tttccaaaga atttgaaaaa aactcagccc ttattccatt
    16861 tcaaaattta aacttcaaag gacttataat ccatgaaaac tagatttgat aaagctaaaa
    16921 tttcaggcat ttgcgtaagc gtacctgaac ataaaatttg cattgatgat gagttagaaa
    16981 gcgttttttc aaacgatatc aaaaccctta aaagaatgaa aaaagccata ggtttaaaca
    17041 cgcgttatat ttgcgatgaa aacacttgcg taagcgatct tggaaaacac gcagccaata
    17101 cacttttaca aggtttaaat atagataaaa atagccttga tgcactcatc gtagtaactc
    17161 aaagtcctga ttttttcatg ccttctacgg cttgttattt acaccaactt ttaaatttaa
    17221 gctccaaaac tgtagctttt gatttagggc aagcttgtgc agggtattta tacggcttat
    17281 ttgtcgctca ttctttaata caaagtggct taggtaaaat tttactcatt tgtggagata
    17341 ctttaagcaa attcatccac cctaaaaata tgaatttagc tcctattttt ggtgatggag
    17401 taagtgcaac tttaattgaa aaaacggatt ttaacgaagc tttttttgag cttggaagcg
    17461 atggaaaata ttttgataaa ctcatcattc caaaaggtgc gatgagaata cctaaagcag
    17521 atattttcaa cgatgattca ctcatgcaaa ctgaggagtt tagacaatta gaaaatcttt
    17581 atatggacgg agcaaatatt tttaatatgg ctttagaatg cgaacctaaa agctttaaag
    17641 aaattttaga attttctaaa gtagatgaaa aagacattgc ttttcatctt tttcatcaat
    17701 ccaatgcgta tttggttgat tgcatcaaag aagaattaaa acttaatgat gataaagttc
    17761 ctaattttat catggaaaaa tacgctaatt taagcgcttg ttcactacct gccctacttt
    17821 gcgaactaga tactccaaaa gaatttaaag cgagtttaag tgcttttggt gcagggctta
    17881 gctggggaag tgcggtgttg aatttcaaag atttatacac aaaagatatt ttaatttaca
    17941 caaaggagaa ataatgacaa aaactgaatt tttagaagag cttaaagaag ctatgcatag
    18001 agatgaagac ttaaatgaag atatgctact tgatgatata gacgagtggg atagtttggc
    18061 ttttgtatct gtgatggtgc tttataaaaa tctttttact ttaaaaatca cagccgagga
    18121 cttgaaaaat tgtcaaaaag taagtgattt aatcaattta gcaaagcttg attaaaacct
    18181 ttaaggtttt aatctttttt tatcactaat tcaaatttgt cacccacatc tttaaatata
    18241 aacactttat ttccacaagg ataagagatg gaattttctt gcatgaaaga ttttcttcct
    18301 tgtagttttt caagcattaa aggaagttct tttctaaata aggctttatc aggtatacca
    18361 caaccatgat ctaaattttt aataaatttt ccatcaattt tattttcatc tatcaaattt
    18421 aagcttacat cgtaacctaa aatttttaat atttgcatgg tttgttgttt aaaattggca
    18481 ggcgttagag gatctttatc gctatgataa ctcacataaa taatattttt atttttttga
    18541 ctttgcaaaa tcaaatgatc cttatttaac aatgttctaa taaaataatt ttcattatta
    18601 aaaaaataag gtgaattttc tttacgcgtc cagtgggttt ttagaaaaca actcacaaaa
    18661 aaatgatcgc cctgcatata catatcccca ttagtatctt tgcttttaaa ttccaactct
    18721 ctaccaataa tataattaag cggtggaaca gccgaacccg aattatcaat cacgccatcc
    18781 acataccaag gagctatttt tgctatgagt aaagataggt atcctccata agaccccccc
    18841 ccataaattt ttggtaaatc tgcaaatttt ggaaagcgtt taactaaatc ttttaaagca
    18901 ttgatatgat caatagctgc cataacgcca aaattttgat attctccacg cgaaggaata
    18961 aaagttgcac ttagtctttc ttcaaaatca taaggcaatc gatttaacat ttttaattct
    19021 gtcataatct cgctcaaata ttcacaatga ctaactacag tattattggc taattgatca
    19081 catggaatat tgtatttacg aagcactttt tctattaatt ttaaatcatc ttttgtaaaa
    19141 tctgctaatg ttgaatactt ttcaacatcc gaacgccttt gacaaaaaca atgataaaaa
    19201 acatgcactg ctacaacatc aaaattttta gcaatataat ttctataaga gtctaaaaaa
    19261 tatatatttg cattggctcc ataacctcct attataaaaa ctatagcttt aatctctttt
    19321 tcatcatcat aacttatacg gtattcaagt ttgctagttc tttttatatt taattctaca
    19381 tcatcacaag aatcgatttc aaagctttgg tttatgagca tataaaggcc ttttttatta
    19441 atttatcgat attatattac aaaaaattaa aaaggtaaat catgacaact catatctatg
    19501 attttttaga aaaaagttta atcaaattta gcgaaaaaac tgcttttgta gaaccctttg
    19561 ccaaagaaag aaaggaaatc acttacaaag actttgatct cttttctaaa aaactagcca
    19621 gtgaaatttt aaaaacttta aaaaataata aacctactca agctcctgtt ttaatcatct
    19681 tgcctaaagg gattgattgt ttgatttcat tttttggagt ggcactcagt ggaaattttt
    19741 atacactttt agatgaaaaa agtcctaaag aaagagtaga aaaagtcata gaagttttaa
    19801 agcctaaact ttttatcact tcaaaggact taaattttaa cttagattta cctacgcttt
    19861 atacacaaga ctttgaaagt tttaatatag atgagagttt gctaaaaaat gctaaagaaa
    19921 aacacataga tactaattta ctctatgttt tctttacaag tgggagcaca ggcattccta
    19981 aaggagtaag catagcacat aagagtgtga ttgattatac tttttgggtg tgtgagactt
    20041 ttaaatttga tgagaatgaa attttagcca atcaagcgcc attttatttt gacaatagca
    20101 ttttagatat tttttcaagt gtaaaatcag gagcgacttt acacctttta cctaatcatc
    20161 tttttgcctt tccaaataaa attttagaat gccttgaaaa agaaaaagta agcactatat
    20221 tttgggtacc ttcggtgctg atttattttg caaatactga agctttgaat aattttagtt
    20281 taaacgcctt aaaaaagata cttttttgtg gtgaaatcat gcccaataaa cagctaaata
    20341 tttggcgtaa acacttaccc aatgctttat ttgccaacct ttatggtcca acagaaatca
    20401 ctgatgtatg ttctttttat atcatcaatc gtacttttaa agatgaagaa cttttaccta
    20461 taggcaaagc atgtaaaaac acagaacttt tagtttttga tgaaaatatg aatttcataa
    20521 gtcctaaaca aataagtgtt aaaggggagc tttttgtgcg tggaacttct ttgtctttag
    20581 ggtattataa tgacaaagaa aaaaccaaac aagcttttat tcaaaatcct ttacatgata
    20641 attatttaga tttactctat aaaacaggag atatcgtttc ttataatgaa tttggagagc
    20701 ttttatgcta cggaagagca gataatcaga taaaatatat gggacataga atagaacttg
    20761 gagaaataga aagcgtgata aattctcatt cgagtataaa aaatagtgct tgtattttta
    20821 aagaagatat tatttgtttt tatgaaagtg aagaagaaat taattttaaa gcttttttga
    20881 aagataaatt accttcttat atgatcccaa aaaattttat taaactcgac aaatttaagc
    20941 ttaatcaaaa tggtaaaatt gatagaaagg ttttaaaaga acttgtttaa ataaatattt
    21001 tataatttca aaaaactaaa ggagaaaaaa tgcaagaaat caaacaattt tttatcaata
    21061 tagaaagaac agatatcaat gagagtatgg aaaatctagt aagtgaagat tttatcgata
    21121 gtatcgatat catggctttg gttgccgaaa tagaaaaatt ttataaaaaa cccttaaaag
    21181 cagaatttat cacacctgaa aattttgaaa gctttgaaaa tatcaaaaaa atgcttgaaa
    21241 ctgcaatgaa agactaatct ttccttgcaa gttcaagctg ttcttttaaa gaactgatga
    21301 tttcattttt agaaacaata atttgtgcta taaaatccgc cacatcatcc caatctttac
    21361 ttagcatatg ggttaaagta taattttgtt catattcttc ccaattcaca ggagtaaaaa
    21421 gagaattttt atgcgggaaa tatttgtttt ttacccattc aagtgaagaa gcaaaataat
    21481 ccacataagc tttagcaata tctttttgca ctgcaaattt taatcttttt tctttgctgc
    21541 cttcaaattt tcttcttgcc ataaaaagca aagaattaag attatcctgc tttaaatctt
    21601 tttgatttaa tcttgacata agctccattc ctaaaagatt aaaactttca tttttggttt
    21661 gttttaaaac aaaactctca tcccattcaa gtcctaaatg ataaacaaaa tccttaagta
    21721 aagtccctcc tacataatcc tcccttagaa gtcttactat caaattttct tctccaaata
    21781 cctcagcatg agttttgcaa atccattcat agtcaaaaat atattttcta ggatgatctt
    21841 gcggagcaaa atcagcagaa taatacccca tattgttttt atgatcttga gaacaatgtg
    21901 agtttaaata acccaaagta tctctaaaat acacaataat ataaatttga gtaaaaccta
    21961 actctctcat aatcttttct aaaatttcta catgtttttt ggtagaaaaa tcccaaacta
    22021 taccctcagc tgaaaaaata aattttttat ctttatgtaa agcactttca cttttaaaat
    22081 tttctatagc tctaagaagt ctttcatttg tgatatgact taaaacactc tcttttttta
    22141 aaatatcttc tttttgaacc aattctaaaa ccatatccac caaagcccaa tgcctatttg
    22201 ccactctaag actttttggg taaatataag ctttttgcaa aagcttttct tcgttttgca
    22261 tcaagaagcc ttgtttttct tgatttcctg tattagtagt tcctatatgt aaatatgctg
    22321 tcattttata tcctttatct ttattttaat ttatcatctc taactcaaat ttatcttcta
    22381 aatccttaaa cacaaatact ttattcccac aaggataaga gatagaattt tcttgcataa
    22441 aagattttct tccttgtagt ttttcaagca ttaaaggaag ttcttttcta aataaagccc
    22501 tatcagtcat tctaagtcca tgctctaaac tttttacaaa tctaccatct atatcatttt
    22561 catcctttat taaatgtaaa gttgcatcat atcctaattc ctgataacac ttataaagtt
    22621 ctattttatt ttgcactggc gcacccatat cttgtatact atgatagctt acaaaaatgg
    22681 tatttttatt taaatttgat tgaatttgaa gatggtttga atttaaaact gctctgatta
    22741 aataattttc atcaccaaaa taataagaag aattcatatt tctattccag tatttatata
    22801 caaaacaata aagtctataa ccacttcctt cgaaataaaa ttccccttga ttcatttctc
    22861 ttcctaaaat gcacgccaaa aatggcaagc aaacacc
//
LOCUS       DAQSLY010000014        22525 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.014, whole genome shotgun sequence.
ACCESSION   DAQSLY010000014 DAQSLY010000000
VERSION     DAQSLY010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22525
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.014"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..604
                     /locus_tag="R2H98_000424"
     CDS             <1..604
                     /locus_tag="R2H98_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEE9023344.1"
                     /translation="LNFENLNKTQVVQNKENNANFNNNTTNKETFTQEQTKTHSENVD
                     KNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNP
                     NNLGEVEVTLIQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQG
                     KREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            658..1542
                     /locus_tag="R2H98_000425"
     CDS             658..1542
                     /locus_tag="R2H98_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEE9023345.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDSKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            1546..3183
                     /locus_tag="R2H98_000426"
     CDS             1546..3183
                     /locus_tag="R2H98_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEE9023346.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(3187..5058)
                     /locus_tag="R2H98_000427"
     CDS             complement(3187..5058)
                     /locus_tag="R2H98_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEE9023347.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(5059..5778)
                     /locus_tag="R2H98_000428"
     CDS             complement(5059..5778)
                     /locus_tag="R2H98_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEE9023348.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGG"
     gene            5962..6059
                     /gene="ffs"
                     /locus_tag="R2H98_000429"
     ncRNA           5962..6059
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="R2H98_000429"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6287..6436
                     /locus_tag="R2H98_000430"
     CDS             6287..6436
                     /locus_tag="R2H98_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
                     /protein_id="HEE9023349.1"
                     /translation="MEDNSWHFLGLFIAVIMAVILQVMPLGPVCMIAIAIVALSGITT
                     TQLKI"
     gene            6659..7003
                     /locus_tag="R2H98_000431"
     CDS             6659..7003
                     /locus_tag="R2H98_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEE9023350.1"
                     /translation="MARGVIKTGLGEHLAYHFISILGKKTLGIAYSIAFCETILAPVT
                     PSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTYLSLVNYQEPILFHQLCLLQLQ
                     LQILWCFIFSLR"
     gene            6946..7161
                     /locus_tag="R2H98_000432"
     CDS             6946..7161
                     /locus_tag="R2H98_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEE9023351.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFTKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            7100..7339
                     /locus_tag="R2H98_000433"
     CDS             7100..7339
                     /locus_tag="R2H98_000433"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEE9023352.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            7461..7682
                     /locus_tag="R2H98_000434"
     CDS             7461..7682
                     /locus_tag="R2H98_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEE9023353.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMLALTHYAIGTAPVIFGT
                     GCVTLKKWWSTGFVISIVDIVVMIAVGLV"
     gene            complement(7734..8750)
                     /gene="mnmA"
                     /locus_tag="R2H98_000435"
     CDS             complement(7734..8750)
                     /gene="mnmA"
                     /locus_tag="R2H98_000435"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEE9023354.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(8750..9355)
                     /locus_tag="R2H98_000436"
     CDS             complement(8750..9355)
                     /locus_tag="R2H98_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEE9023355.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            complement(9455..10603)
                     /locus_tag="R2H98_000437"
     CDS             complement(9455..10603)
                     /locus_tag="R2H98_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023356.1"
                     /translation="MINGINSYSSYNYTNTFSNNTSNIKSSNVANDNSSLVSDKSRAV
                     SKMLGYGVDKDGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSYINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLVKIPQGFEFNQNTLEINKKYNLNDKEYKDFM
                     SNYQNYSPTSHNIKIMTFFSLDDKSDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGF
                     QAKNYFIEGQTSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDM
                     SIDDFKQKILEQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQSSSETYKDDNKMNEL
                     LKKLLENKFSTSDELELLFGMKFSDDNTGEFNKIISQNTAQKSIDIKA"
     gene            complement(10673..11188)
                     /locus_tag="R2H98_000438"
     CDS             complement(10673..11188)
                     /locus_tag="R2H98_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023357.1"
                     /translation="MLKKLVNCLILGSLFTSSAFAGDFLAKVSNGALSDNSQGVKALN
                     LDEMKQVKGGYQVLTSKLGNSEYIALAIPDNTTTYKQLVAIYTVTGDNTFSNTFLGYT
                     VKRNIAISSSGKPYVLFNYGVALLDRQTGLHRVNSSEILNNNQVIKELTMKYKTQFES
                     NLGGWTARARR"
     gene            11321..12174
                     /locus_tag="R2H98_000439"
                     /pseudo
     CDS             11321..12174
                     /locus_tag="R2H98_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            12159..12755
                     /locus_tag="R2H98_000440"
     CDS             12159..12755
                     /locus_tag="R2H98_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEE9023358.1"
                     /translation="MEKILKILLFLPILTLSAKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGYESNSYQIN
                     RENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIWD
                     RYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(12804..13646)
                     /gene="fliY"
                     /locus_tag="R2H98_000441"
     CDS             complement(12804..13646)
                     /gene="fliY"
                     /locus_tag="R2H98_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEE9023359.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(13643..14722)
                     /gene="fliM"
                     /locus_tag="R2H98_000442"
     CDS             complement(13643..14722)
                     /gene="fliM"
                     /locus_tag="R2H98_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEE9023360.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(14722..15414)
                     /locus_tag="R2H98_000443"
     CDS             complement(14722..15414)
                     /locus_tag="R2H98_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEE9023361.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(15395..15751)
                     /locus_tag="R2H98_000444"
     CDS             complement(15395..15751)
                     /locus_tag="R2H98_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023362.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(15770..16636)
                     /gene="flhG"
                     /locus_tag="R2H98_000445"
     CDS             complement(15770..16636)
                     /gene="flhG"
                     /locus_tag="R2H98_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEE9023363.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(16629..18083)
                     /gene="flhF"
                     /locus_tag="R2H98_000446"
     CDS             complement(16629..18083)
                     /gene="flhF"
                     /locus_tag="R2H98_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEE9023364.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(18093..18566)
                     /gene="folK"
                     /locus_tag="R2H98_000447"
     CDS             complement(18093..18566)
                     /gene="folK"
                     /locus_tag="R2H98_000447"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEE9023365.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(18569..19048)
                     /gene="aroQ"
                     /locus_tag="R2H98_000448"
     CDS             complement(18569..19048)
                     /gene="aroQ"
                     /locus_tag="R2H98_000448"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEE9023366.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            19139..20368
                     /locus_tag="R2H98_000449"
     CDS             19139..20368
                     /locus_tag="R2H98_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEE9023367.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            20356..21252
                     /gene="sppA"
                     /locus_tag="R2H98_000450"
     CDS             20356..21252
                     /gene="sppA"
                     /locus_tag="R2H98_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEE9023368.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELGNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            21331..22362
                     /locus_tag="R2H98_000451"
     CDS             21331..22362
                     /locus_tag="R2H98_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEE9023369.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLYADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
BASE COUNT         7284 a         3372 c         3501 g         8368 t
ORIGIN      
        1 attaaatttt gaaaatttaa ataaaactca agtagttcaa aacaaagaga ataatgcaaa
       61 ttttaataat aatactacta ataaagaaac ttttactcaa gagcaaacaa aaacgcacag
      121 tgaaaatgta gataaaaata gcttagatga gttaaattct ttagtcaaag atttaaataa
      181 agtaacacaa aacaatgctc gcaatatcac tcctaaagaa actttgcagt atttttcaca
      241 agatttaaaa gaggctgtgg atcaatacaa agcgcctatt actaaactta gtatcactct
      301 aaatcctaat aatcttggag aagtggaggt aactttgata caaagaggta ataaccttca
      361 tatcaatttc aactccaata ccaatgcaat gaatttgttt atccaaaatc aagccgagtt
      421 taaaaattct cttgtaaata tgggatttac tggacttgaa atgaatttta gtgatcaagg
      481 taaaagagag caaaatcaaa atcaaggaaa aaatcgtagt ggatatggtt ttaaagatgc
      541 tttagatgga aaaaatgaaa gtgaaaaagt caatctagag cttgttttag cgaagtattt
      601 ttaaattgga acacttattg cttaaataat aaaaaactaa ataaaaagga gtttataatg
      661 atatcatcat cggattggaa tttaaatacc actgctacaa cttcaggtac tacttcttca
      721 ggaagtacta gtggaacaac tagaacagat tcaagcagta gctcaggaat agtgagcaat
      781 ccaaatgcta ccttagataa ggatgcgttt ttaaaacttc ttttgataga gcttcaacat
      841 caagatccaa cagatcctat ggatagcgat aaaatgctta ctcaaacttc acagcttagt
      901 gcacttgaaa tgcagcaaaa taccaataca actatgcaaa aaatggttga aactatgcaa
      961 aagctttctg attcttttag tacaagtatg agtacttcag ctttaggggc tattggtaaa
     1021 atggcaactg tttcagataa taaaatcaaa cttacaggtg cagatgagct tatcgctctt
     1081 aaaatgtatt tgcctgaaga ttctgatgaa aacggtgtta cgctagaaat ttatgatagc
     1141 aataataaac ttgttttcag tgaaaaaagc gattctaaat ctatttctca aggtttattt
     1201 actatggagt ggccaggaag aaataacgat ggggtttatg caggtgatgg tgagtacact
     1261 gttaaaatgg tttataataa taaaaatggt gaaaaaatca ctgcaaatta cggaacttat
     1321 cctatcgaag gtgttgtttt taaagatggt gttgcctatg caaaaatggc tggacaagaa
     1381 gttccttttg atgcaataca agaaataaca gattataagc ttggttcatc ttcatctact
     1441 ggaggaagcg gttcaagtgg agactcaagt ggtggttcaa gcgatggaga ttcttctggg
     1501 tctggatcta cagaagatgg cgacaaagag gaaaaggcat aagccatgat gaattcattt
     1561 tataatggga tttctggagt aaaaagcaat agctttggta ttgatatcac tgctaataac
     1621 atagcaaatg tcaataccac gggctttaaa tactctgatg ctcaatttaa agatattttt
     1681 tatactacca taacaaccca atcaaccaac cctgctcaag gtggttatgg tagcggtgca
     1741 gcatcttctc aagttgtttt cgaacagggt tctcctgttg caagtgatgg cgaatttgat
     1801 gtggctttgc aaggaaaagg attttttggg gttttagggg ctgatggtaa tgcttactat
     1861 actagaaatg gatcatttag aagagatgcc aatggatatt tggtggattc ttatggaaat
     1921 tttgttttag gaacaatgaa tcctgctttt actggtatta actatagcga tagagttgct
     1981 gggcttatgg gggattatct taacacagga actccggtaa ataatggttt tactgtaaat
     2041 tcaaataatt ctttcagtat aggcacaaca gcttctcaag gggctattaa agtacctgtg
     2101 aatatgtatt tacctcctca agtaactcaa aatgtaaaat ggagtggaag tttaaatact
     2161 aacacaacaa cagaagtagt taaagtagat cttgatccta gtaaatttaa cattacaaaa
     2221 actgaagatg gaaaatatgt agttagtggt agtgttagca aagaagatgt gtttagtgct
     2281 aaagcgggtg ataggattat tttaaatttc actgatgata atggcgtaaa aacaagcttt
     2341 gaagcgactt tagatgaaaa tctaaatttt aaaagtaacg agcttgattt aaaaggattg
     2401 gatgaaaata gcatcaagct tgatacagct caaatttcaa cagagcaaca aaaagccaat
     2461 aaagatattt tagaatcccc tatttataat gcagatggaa gtaaaagcac tttaagggtt
     2521 acacttgaaa gagttttacc gcaagaaggc gataatatac aatataaagc tattgcacaa
     2581 atttatgatt ctaatggcaa tgccgtaggc aatccgactg aaggaaatat ggtttttgat
     2641 aaaaatggtg ctttgcttca aaacaatatt acaagcattg caaatccaaa tggtggaaca
     2701 attaatattg atttaggttc tccttatgat gctaacaagc ctggttcggg ctatagtggg
     2761 atttatatta aacaaggcgt cgaaaaaaat gtagttacac aacaagatgg tgtagctgaa
     2821 gggttttttg aacaatataa tatatccgat gatggaagta ttgttgcgca atttagcaat
     2881 ggtaaaaatg ccatagttgg aaagcttgct ttatataatt ttatcaatga gcaaggatta
     2941 gttgctatgg gagataatat ttttgcagca acggcaaata gcggtgatgc aagttttatt
     3001 atgaaagatg gtcaagttgt taatacagct aaatttaaag gcggattctt agaacaatca
     3061 aatgttgatt taagcgcaga gctttcaaac cttatcgtaa ctcaaaaagc ctttgatgca
     3121 agctcaaaaa gtatcactac aagtgatcag atgatacaaa aagccattaa tatgaaaaga
     3181 taattcttag gaattatctt tttctaattt ttcaaaaata attttaattt cttctatgtc
     3241 gctttcgcta taattatggc ttgatttaat ataacttact tgctgtcctt tttcaagata
     3301 taaaaccttt tcatagtctt ttaaatttat atgatgtttt agttcaaggt tggtgtttgt
     3361 gttaggataa aattttaaaa aattatcctc tccgatattt tcggctttta tgtatatttt
     3421 tacattgtaa accatttcat ttaagaaatt taatttcgca tcaatttgat attttaattt
     3481 tataaatttt ttatacgaaa tgctaagatg attgtatttt tttatgatat cgtgataaag
     3541 atttgaaaat ttcatttcta tggcgctagg atttttagtc ttttgaagtt tgatgatttt
     3601 gatttgattt ttgattagat aatcatagta attttgcatt ttgcttatgg tgtcatcaag
     3661 cttacttttt attttaaggc ttagattttt aagattttcg cattctgtat ctgagttgtt
     3721 ttcaatagaa actagtggtg aaactacgat attgttttta aattttatat tgtttgttat
     3781 gattagattt tttcttggat ataaagtatt atccgttagt aaattgcaaa tataaatatt
     3841 ttctgcttct atttttccac ccatgcagtt ttcaacaaat acatttttag ctataattgt
     3901 cccattttct aaatttttta tatatacagt gtcagcttgc aaagttcctt tgtgtgttgt
     3961 aataaaaata tcttgtgcaa aaatttcgct ttttgcatga gttaagcctt tgatactgat
     4021 attttttcca taaagttttg ttgctccaac attcccattt acttttatat ttgaagcttg
     4081 aacatttaca atacctgatt taatagcatc atcacttata tcaaaattag tgatttctaa
     4141 gtttatattt tcatcggtat ttgttttgat tgaaccggtt gttttaagcc ctatttgtga
     4201 taattttaaa ttatttgcga tacaatatcc tgtatgatct ttgtttaaaa atccataatt
     4261 ggcgctaaaa tatttaattc tatcttctaa ttcttctgtg taaatgcttt catcttttat
     4321 gataaaagga ttatcaagaa aggctattgg atttaaatga agtatctctc ctcttaaatt
     4381 tcgtccttct tttccaagaa ttctataaat gtattcaaaa agtagctcat ttttttcaat
     4441 aggtttacag tagtttcctt catcatagtt aatattttcg tcaaaacatt cttcgttaac
     4501 atctctatga taaataattt catcactttt atgttcaatc ttatctacac ctttggcaat
     4561 ttcaagctct atttctttaa tagatggact tttttgtatt gataagataa aatcatcaat
     4621 cttgtcaaat aaatttttat caagtcttaa gattaaaaat ttttgtttga tcattatttt
     4681 gtagatattt tgtaaaatat caaattttaa attaggataa tatttaaaat tttctgtaag
     4741 gttgatactg gcttttagat gggttaggtt ggagttggat ctaagtttga ctgtaaaagg
     4801 aaaactttgg gtttttgggt aaatttctat aagaaatttt tgtactatgg tattgtagtt
     4861 ttttacaaaa aaatcatctg cataaaataa gtcaaaatcc tttctttcat aagtttttgt
     4921 ttttgctggt tttacactag aacacagaag tttaaaatct ataactctaa aatcaagaat
     4981 ttgttctgtg tttgcttgtt catgatttaa actttcaaaa ggattgaaag tttctaaggt
     5041 ttttacttga aaattcatct atcccccccc catatcattt ttttgagtcg tgaaatggtg
     5101 attttgtagt gcatcttcaa aaatagcatt gaatttttcg aaattttgat tcaaatcaaa
     5161 ataatccaaa tgaactaaaa tttgcccaca tttttcgcac tttaaggtat tttctttgct
     5221 aacaagctct tgatgtatag tttgtggaac tgcatggata cgcaaagaac aattgcaaat
     5281 ataatcatga gttttttcag ctcttaggtc ttgtttgatt gattttagtt ttatgtattg
     5341 ttctaaggta taatggattt cttgaaggtg tagggttttt tttgtaaaat tagctatcca
     5401 taaatcttca ttagcaaaat gatctaaaat ccaatctttg gttaatatgg aaagttcttg
     5461 agacattttt acaatattat ctgaatgctc taaaagctct ttagtttttt ctactaatat
     5521 ttgatgagat tttttatgtt cttcaatcaa aggaaaatca atgctttcca taaatttttc
     5581 ttcatcttta aaatgaattt tgatgtattg aaatagcttt acaagaattt gttttaaatc
     5641 atttttgtgt tgtgtattat tatcttgaat gtttagagct aaatcatttg caagattggt
     5701 aatttcaaaa attagttcat gttgtttgtc caattgcata tttttaatgc taaaatctct
     5761 actccattta actttcatat tttttccttg cgatataaat tatttttata tcgtattttt
     5821 agagaataaa ataatagttt ttataaataa attttaaaaa atgtataaaa ttttaaccaa
     5881 tttattattt atatattatt ttttttagtt ttataattct caaggctttt taagtatatt
     5941 gtgatataat tttagagcct tttcttagac ctgtgcaatg ctatttttaa gcaccgcttc
     6001 agggtgggaa cacagcagag cacttgattt tagtgtgtgc cgcagttatc tggggaaggg
     6061 ttttattcat tttaaaattc cctatttatt tttcaatcag gctagctttt ttataaatta
     6121 aaaatttatt taaaaattat aattttaaga tttattaaaa tattagttaa ctagaatttc
     6181 attaccaata tcaaaagata aacaatggat agaaagaaaa ttcccttgtt ggtgctgtgt
     6241 attttaattg caactgtgtt ttggcctata cctactcctt gtaggtttgg aagataattc
     6301 ttggcatttt cttgggcttt ttattgctgt gattatggca gtgattttac aagtaatgcc
     6361 tttggggcct gtttgtatga tagctattgc catagtagct cttagtggca ttaccactac
     6421 ccaattgaaa atctaagtaa aatttacacc aaagctactt cgaaaacttc tacgcaacaa
     6481 cttattgatg agactaaaat ttcctttaaa tacttcagta cttgattttt tatatcaaaa
     6541 gagtataaga tgaaaaggta aatactgcta tatcaaattt aaaatctaaa acgggtataa
     6601 aagacgcttt aagtggtttt tcaaattctc ttatttagct tatagttatt ctattattgt
     6661 ggctcgtgga gttattaaaa caggacttgg agagcatttg gcttatcatt ttatcagtat
     6721 tcttggtaaa aaaaccttag gtattgctta ttctatagct ttttgtgaaa ctattttagc
     6781 tccagttact ccttcaaata ctgcaagagc aggggctatc ataaatccta tagttcaagt
     6841 tattgcaaga agttttaaat ccactcctga agatggaaca caaaataaaa taggcactta
     6901 tctttctttg gtaaattatc aagagccaat cctatttcat cagctatgtt tattacagct
     6961 acagctccaa atcctttggt gctttatttt ctctctccgc tagaaattaa atccacgcct
     7021 aatgcttcta cttttactaa agataaatta aaagaacttg taaaaatgaa aaatagtgaa
     7081 aaaatcatgc tcagtgtttt tgtctcgctt ttacttttat gggctggagc tttgggcttg
     7141 tttttttgga atttctcttg atgcgactag tgtggctttg cttgggttgt ctttggtgtt
     7201 gattagtgga gttttaactt ttggggaagt tttggccgaa aaagctgctt ggaatacttt
     7261 agtatggttt tcagctcttg taatgatggc aactttactt ggcaaacttg gcgttacaca
     7321 gtttttagct gaagcttaag gtgaatttgc ttctgctatg ggacttgggg aaatttctat
     7381 tatgatattt ttaagccttg cttttttata tacacactat ttctttgctt ccattacagc
     7441 tcatatatca gcaatgtttt ttgtttttta tagtgcagct tgccttagga gcaccaccac
     7501 ttttttatgc ttttattatg atagcttcag gtaatgttat gttggcatta actcactatg
     7561 caataggaac agctcctgtt atttttggaa caggctgtgt aactcttaaa aaatggtgga
     7621 gtacaggttt tgtgatttcc atagttgata tagtagtgat gatagctgtt gggcttgttt
     7681 agtggaaaat tttaggattt tattaataat ttctaggaat taattcctag aaattattct
     7741 ataaaaccac ttgctatgac tttatcatga tcataaaaga ctgccatttg tccgctagca
     7801 agtccataaa caggatcttt tagagtgatt tttgcgcttt tatcttcata aatttctacc
     7861 ttacaaggtg tagattttga acgatagcgg atttttactt cgcaaacaag ctctttagcg
     7921 tctataaaaa gattgatatt ttttaggtta aattcactga ttttaagttc ttctttggtt
     7981 cctacgatga tttggttttg cttaggattg atttttaaaa caaaatgtgg ttcatgtgcc
     8041 ccacgcactt caaagcccct tcttttgcct atggtatagt gcatatagcc ctcatgtttg
     8101 cctaccactt ttccgctact atctaatact tctccaggaa tttttgtatc cataaactga
     8161 tctaaaactt gcacataagt atcttcaaca aagcaaattt cagaactttc cttttgggtg
     8221 gcaaaagatt ttaaaacctc tatagtggaa gcaaattttt tcacatcttc ttttttcatt
     8281 tcgcctagcg gaaaaataag atattttaaa gcttctttat ctgcgctagc taaaaaatag
     8341 ctttgatcct tgctttcatc tactgcggtt tttattaagt tgttttcaag tcttgcataa
     8401 tgccctgtgg caagtttttc acaacctaaa cttttagcaa attctaaaag ttttccaagt
     8461 ttgataaaac ggttacataa agcgcaagga tttggtgttt taccctcttt ataagtatcc
     8521 acaaaaggca tgtaaacttt gtttttaaaa tcttcttgta agtctaaaat atgataagga
     8581 atttgcaaaa agtttgcaac tttttctact tttttgatat tttcttcgtg ataatttggt
     8641 ttgccatgaa gtttcatata acaacctata acttcatgac ctaaattttt aagtttgtaa
     8701 gcagtgactg tactatcaac tccaccgctc atagcgacta gaattttcat taaatttcct
     8761 ttaaagtatt aattataaaa tccaagtcgt cagtgatttt atactttaac tcatctcctt
     8821 tagaaatcac ttcaagtttg agtaaagaat ttctgacgaa ctcatcaaaa cctcgccaaa
     8881 attcactccc aaacaaaata ataggaacat cttttttaaa ttctaattgt tttaatgtaa
     8941 gaatttcaca caattcatca agtgttccaa agccgcctgg gaagatcaca aaagctagac
     9001 tcttttcaat aagagccatt ttgcgtatgg ctaagctctc aaaagtaata ttatattcta
     9061 caaaatcatt aagtttttgc tcgtgaggta aaaatatatt aaaccctaca gaactcattg
     9121 aatttgtatt atttttttgt gaaaaagcac cttcgttggc tgcacgcata ataccaccac
     9181 ctccaccact tatcacacaa aaaccatttt gaacacattt ttgtgccaaa attttagcct
     9241 gctgataata aaaattatct tctttaagcc ttgctgaacc aaaaaaagtt acggcatttt
     9301 ttaggtttgg tatgttagca aatttttcta aatcttggct tattttttca ttcatttttc
     9361 aacctttagt taaaataaat tccattctag ctaaaaattt ataataagtt ctttattata
     9421 taagttttaa tagaatttaa agacttttaa atccttaagc tttaatatct atactttttt
     9481 gtgcagtatt ttgagaaata attttgttaa attctcctgt gttatcatca ctaaatttca
     9541 taccaaaaag aagttctaac tcatcgcttg tgctaaattt attttccagt agctttttta
     9601 aaagctcatt cattttatta tcatctttat aggtttcgct tgaactttgc gcttgtatag
     9661 gtttaaatgg cttttttttg tcttcttctg aagtttcttt gttatttgta ttttttgtag
     9721 gattgtttaa attttctttt tgttctagta ttttttgttt aaaatcatca atgctcatat
     9781 ctgaatttaa taaatcaaaa agcttaaaaa tatctccttt aaaattcata ctattttcac
     9841 ttatgaattt gtttaaatta tcaatttcac tttgactcat agttttatca aatccttgca
     9901 ttttgcctaa aatacttgtt tgtccttcga taaaatagtt ttttgcttga aatccagtaa
     9961 agaaagtcat aaaaatacca ctttttgtta tagttttatc attattacta taaggagtag
    10021 gatctattaa agaatattta aaaatatcac ttttatcatc aagtgagaaa aaagtcatta
    10081 tttttatatt atgggaagtc ggagagtaat tttgataatt agacataaaa tctttatact
    10141 ctttatcatt taaattatat tttttattta tctccaaagt attttgatta aattcgaaac
    10201 cttgtggtat ttttactaag tcttcttttg taaaattgat tttattgttt aactcatcat
    10261 ttaaaagttg tgaaaatact ttataagcat ttcctatact ttttgctata tcaatattaa
    10321 tataacttga taatagactt tttgtttgaa tattaacaaa attttctata tctttagcat
    10381 aaatcttata atcttttggt aagcctgcag cttcgttaaa atcgcttgta aaaaagccat
    10441 ctttatctac gccatatcct agcattttac ttactgccct agatttatcg cttacaaggc
    10501 ttgagttatc atttgcaaca ttagatgatt ttatatttga agtattatta ctaaaagtat
    10561 ttgtgtaatt gtagcttgaa taagaattta taccattaat catttttacc ttcctgtaag
    10621 taaagtttta tttataagat aaatcggcaa aaatgatttt ttcataagtt ttttatcttc
    10681 tagctctagc agtccagcca ccaagattac tttcaaattg agttttatat ttcatagtta
    10741 attctttaat aacctgatta ttatttaaaa tctcactcga attaactcta tgcaaccccg
    10801 tttgtctatc aagtagtgca acaccatagt taaaaagaac ataaggtttt cccgagcttg
    10861 atattgcgat atttcttttt actgtataac ctaaaaatgt atttgaaaaa gtgttatcgc
    10921 cagttacggt ataaatggct accaactgtt tatatgttgt tgtattatct ggaatagcta
    10981 atgctatata ttcagaattt ccaagtttgc ttgtaagaac ttgatatcca cccttaactt
    11041 gtttcatctc atctaaatta agagccttaa ctccttgaga attatcactt aaagcaccat
    11101 tactaacctt agctaaaaaa tccccagcaa aagcagaact tgtaaataaa gaacccaaaa
    11161 ttaaacaatt tactaatttt tttaacatat aattctcctt ttcttaacta ttttactctt
    11221 tatttgaata atatcataaa ttatatatta aaatcaaatt tttttatttg gaacattcat
    11281 tgctttaaaa aaatttttta aaatatttag aaaggtaaca atgaaaaaga tttatttaac
    11341 atttatggtt ttagtcagtt gtgtttttgc tagtgatgaa ctaaatatag acagtttgtt
    11401 taaaaagcaa ataggtttaa gaagtattac aagcttttct ttacttagca caggaaatgc
    11461 aaactcgtat tctctttatc ctaatataac aataggcgga gatcctacaa tttggaatga
    11521 tacaaagcaa gtgtttttaa ctcaaacttt catttatacc ataacaccta agtttgacat
    11581 acttatttca gggggcggaa gttatgcaag acaagaatat acaaactttt ttacaaatga
    11641 gtattctagt aaaaacagaa taggttttga tagtttatga ctaggtttta tttatacagg
    11701 cgatagcatt gcagatttaa ttccacaaat tacctttcaa gctgcagtcg ttcaaagaga
    11761 aaaagcagtc aatcaaacca aaacttttac ctaaaatcac aaagcttaca agctagtcta
    11821 aggggatata gcgatcctgt tgtatatagc atttataccg gctttggtta taaccaatca
    11881 agaaaattta aaacccttaa aatagagtat ggaaatagta tttatgtggg tggggattta
    11941 tctattattc taagtcctaa aattacttta gatttaggag cagagcaaag atttcaaacc
    12001 gagcaaaaaa ttaatggtta tcaaaattct gaagtgcgtt ctattccaac tttaagttta
    12061 ggttctactt atagcattaa ttcagatacc gcagtttctg ttaatgctag ttttggagga
    12121 agctctgctt ctcctgatag catatttggg ataagcttat ggaaaaaatt ctaaaaattt
    12181 tattattttt acccattctt actttgagtg caaaagcgga atgggtagtt aaatcctatc
    12241 aagaaattaa aaacgaaaga gtaataaggc aaacttacga gcaatcttgt ggggcttcat
    12301 ctttggcaac tttactcaat atacttgatg ataaaaagtt tgatgaactt gaacttttaa
    12361 agattatgag tggacaggaa ctttatacgg atatggtaag ctttgcagat ttaagcgatg
    12421 cagttaaaaa actaggctat gaaagcaatt catatcaaat caatagagaa aacttggata
    12481 aacttgtaaa tattccaatg cttgtaaaaa ttgaagatga tccacgcttt ccacattttg
    12541 ttataattat caatcataaa ggtaattatt tacaagtgct tgatccaagt catggagaat
    12601 atataagttc taaaagtcaa ttttttagta tttgggatag atataataaa ggtggttatg
    12661 ctttaattgt tgctcctaaa aaagagctaa aaccttttaa gttaaatact ccaaaatctt
    12721 tacattttga tttcagccct tttagtttgt tttagtttta attcgtttat atttattatt
    12781 cttaatttgt aggctaaaac tttttatctt agttgttcta atctttcttt tttagaacca
    12841 atttctgtaa tttgaacgcc gaagttacca tcgacaatta ctacctcgcc ataagcaatt
    12901 cttttatccc caattaaaat ttcaagcgga tcgtttgcaa gttgattaag ctccacaact
    12961 gaacctatat ccatagttaa aacatctttt aaaagcattt ttttattgcc tatacgcaca
    13021 cgaacaggca aacgcacatc catgataaga ttgatatttt taagctcttc gctaagcatt
    13081 attgcttttt cttcagtatt gtgattagaa tcagtgcttg tatttcctgt ttcagcaggt
    13141 ttcccgctta ggatgttatg gagtgtttga tccatggcta aagaaacttg ttcttctaaa
    13201 tcgcctattt ttacatcata taaaaataat tttttaaaat ctttaaaatc tacgctttca
    13261 ggcacaaatt cacaagattc tatgctaaaa tccatttttg gaatgtcttt ttgggctcct
    13321 aaggttgtag aaaatgctga aatgatattt tggatggctt ctttagctgc atccatttca
    13381 tcaggaccta gtttatcgtt tttggtgatc tcttcttcac ccatcatcca ttcaccaata
    13441 gcactcatta aaacagcacc agctaaaatt cctatttttc caccatttgc tatattaaat
    13501 atagcataca ctaaaggtgc ttttaaagta tcgcttgtat tgacatcaaa ttctttatat
    13561 tcgctaaatt cagcactttt tcctgttaaa ccttcaatgg tgctgatgca ttcatttgta
    13621 aacattttta aaaaatcatt gatcatattt cttcatcctc ctcttcaggc tcatcataaa
    13681 cactggcttt agctttacgc tcttcttcgt atttttccaa aatttctttg atttcatctt
    13741 tatctgtgcg tataagttct aaaattttaa tagattttct aaaacgatgc aatccaattt
    13801 gtgctaagaa aacatctttt ttatcgatac ttactatagc tttatcgtct gcttctctat
    13861 caagccttaa aatatcgcct tgtttaagtt ctaaaaattc atgaacatta attaaggttt
    13921 ttcctaaaat tgcctcatat accacttcag cacgaccgat taaagtttta agctctttgt
    13981 tacgtgattt tttggctgag gtttcaccca tcataatatc acggtttgct aaacggctta
    14041 atatactttc taaatgtact acaggatagc agatatttac cattccgctt gaatttccta
    14101 tgatgatttc cattactacc atgataacaa tctcattttg agatacgatt tgcacaacat
    14161 ttggacttga ttctttagct tctatactag gataaatttc agttacggta gcccagcttt
    14221 ctttaagtct ttgcataatg atacgcaaaa tagaatcaag taaattaagc tcaatatccg
    14281 taagctcacg cgaagcttca tagctatcgc cttgaccacc taaaagcctg tctatcatag
    14341 gaaaagctat gcttggattg atttctaaaa cacagtttcc atctaaaggt ttgatagaaa
    14401 aaacattaaa acttgttggg cttggcaaag acattaaaaa ctctccataa gtcatctgat
    14461 cgactgaatg aagtttagtt tcaacaatac ttctcatcat cgatgaaatt tgagaggcta
    14521 aatttcttgc taatttatca tgtatgcctt taatcgtcct aagttgttct tttgaaactc
    14581 tgttgggacg cttaaaatca tatacaacga tatttctttc atctttttca tcttttgaat
    14641 ttgaggctat gggtgtgtcg gtgttatcat cgacaacttc aagtagagca tcaatttctt
    14701 cttgggagag tatctcagcc attacactag cctttctcta agttttttaa gaagtttttt
    14761 gtgaatttgt gaaattctgc tttcactgat ttgtaaaatt tcactgattt cttttaggct
    14821 taattcttca taataataaa gctgaataat taactgatcg cgctctttaa gatcatctag
    14881 cacttcgtga attttttcta aaagttcttc tttttcaatt ttttctaaag tattgtcttc
    14941 attataaagt tcgatttgct catcaatggg cagggtatag ctaatagcat gagctgttct
    15001 tacttctttg attttttcta catctaaatc aagttttttg gctagatact catcatcagg
    15061 ttcgcattca tgttctaaaa aatattcatc catgattgca tcaatatctt taataatttt
    15121 acgattattt cgactcatta catcaagact tctaagataa tcaagcatag agccattaac
    15181 tctttttctt gcaaaacccc agaagttatc attttgttct ttatcgtaac ggcgtgaaag
    15241 ctttatcatt tcttcaacgc ctatgctaat aagatcatta acatctatac ttgaaggcaa
    15301 gcgttctttt agtctaaaag ccatagcacg cagagctggc atgtaagaaa gcacaagctc
    15361 atcttgctct ttctttagca tttgtgcata agctttaggc ggctctttta gcatttcttc
    15421 gtctttcttt gaattcattt ttctttagct cttctctttc ttcattgagc ttttctaaaa
    15481 ttatatccat tttcttttca cgaataacta aatcgttgat aatattattg ctagtttttt
    15541 cataatcgtg tttattaaag attctgccac taattttctt tacatctata aaattcataa
    15601 tagcaatatg aacaaaaaca taaaacataa aagtaataaa acaagtaaaa atcagtatat
    15661 caaaggcttc atctatacta ataatgctaa atgcaagtcc tataaaaaat ccacaaacag
    15721 tgaaaaatgc tacgtaattt tctggcctca taatctcttc tctttattgc taaaatcttt
    15781 caataatttt tctaaaaaaa cttgaaaaac tacgatttga aacattatca agcactttcc
    15841 gttccaatct atataaaagc ttggaagcta gggctttaat ctcatcactt gaggctgtgt
    15901 tttcatcgct aaataaagtt ctttttttaa tactaccact tacatcttta gaagcgctta
    15961 aatgacctaa gaattctaaa tttaaaggat ttttaatgtt tgcatctgca acttttttaa
    16021 tattttcaaa aacttttaaa gcttcatttt cattttttac aacattaaag agcattagta
    16081 aattttcttt tgtcttagaa gttgttttta tggttgcata cgcatcagtg attgctgcag
    16141 gatcaggaac agttactact ataacttcat cagccatttc taaaaaattt aaaatatttc
    16201 caccaatacc cgcgcctgtg tcgataataa gaaaatcaag ttcatctaaa atacttgctt
    16261 gatttaaaaa tctctcgtaa atatttttat cattatattt taaaatctca tctccacttt
    16321 cgcctgggat gagccataaa tttggcttaa cttctattaa aatgtcttcc aaggagcatt
    16381 ctccgcgtaa aacatgcaag agattttttt gtatgcgtac atttaaaatg acatccaaat
    16441 ttgccaagcc aatatcagca tcaaaaagcc caactttata gccattattt gctaaaacat
    16501 tggctagatt cgcgctaatc gtactttttc caacgccacc ttttccactt gtaatagcta
    16561 taaaatgagt gttttgggat tttttggttc cattttgact catgagattg cgaagtttat
    16621 ttgcttggtt attcattatt ttttcctttg ttaaaccctt ctaaaataca atgaactaga
    16681 aaatcactat tggctacttc taaatcatct ggcacttctt gtcctataga gaaaaagctt
    16741 agaggaatat ttgtttcata aacaagagag aagatatttc caaaaacctt tgtttcatca
    16801 aatttagtaa taatcaaagt atcaatattt aagaatgaaa aatttttata aatttccatt
    16861 aaatcttcat gtttggtgtt tgcagaaacc actaaattta catcaatttc tgcatttgag
    16921 tgcattaaaa attctttagt tttagcaagt ttgctttgat cgtattgtga atttcctata
    16981 gtatcaacta aaattacttc gcaattattt aagcttttta tcgcttcatc taaatccttt
    17041 ggttctatgc tatcaataat aggaagtttc atcatttttg catactgaaa aagttgctca
    17101 actgcaccga ttctataagt atcaagcgta ataatacctg ttttataacg cttatctcca
    17161 taagcatagc gaaaagctaa cttagctaag gttgttgttt ttccgactcc tgttgggcct
    17221 actagcatca tgattttttg tttttttata tcgctttcaa cacgacaagg caagatattt
    17281 cttaaaagtg agtgaaaata tctttgaacc gcatctttgt tggttttcat agcagctggc
    17341 atattttcta tagttgcttt cataatcgct tctagatgat tttcaagcat tccactttct
    17401 ttggcttgtt tataaatact tgcaaattca ggaggtatca taagattttt tctagcttca
    17461 gctttatcgt cccacatcat atctgcaaga agatctattt tatcattaag cttgttgatt
    17521 tgtttttcaa attgcttttc aaaattttct atttttttat tataatttgg attaggggtg
    17581 taattttcta aaggtgtgtt tgtgacttta gaaatttcat tgctaacttc acttagtttt
    17641 tctttgaaat catcaaagcc tagagtctta ttttgatgag ggttgatttt gttttgtgga
    17701 aaatcttgat aggttttttt agctaagtca ttgtttttta cagtgtttaa atttgtattt
    17761 aagcgagtgt ttgagaaatc caagactaca tcttcatctt cttgagggat ttgagatcta
    17821 attttttctt ctgcaagaga ggtagaggat ggttttggcg agcttttttt tgcaggtaaa
    17881 gattttcctt gtttttttaa gtgttcttca tagtcgcttt cttctatggc taccataacc
    17941 tcataaagcg cactgcgatt taaggtttta ggacgaattt gtttatttgt tataattaaa
    18001 gctttatctc cgtaatcttc ttttactttg ggtataattt gttctgtatc ttcaacggta
    18061 aaagtatgta taagttgtcc catttatatt ccttatatca tgcctaaagg caaaattaca
    18121 ctcactcttt ctttagcccc tttatgaggc acctcacacc acttatcacg cttgactttt
    18181 tgtgaaaagt ataaaagatc taaatcaagc gttctaggag cgtttttgaa agttctcttg
    18241 cgtttaaatt ttacttcata gtaaagtaaa actttcaaaa gtgctcgtgc atgcaaatta
    18301 gtttgtatca acataacagc attggtaaaa tctttttgct ctttaaaacc aaaggcttca
    18361 tttatcaaca taggagatgt ggataaaatt ttaaatcttt tatcatccat cattactcga
    18421 aaaagcatat caaatctttt tttttcgggc tctatattgc ttcctaagcc tataagagct
    18481 aaatatttaa aagatcgtat attttgacta aaaaaaggaa aaaaacgact tttttcaaag
    18541 tgttttactc cttgaatttt tagcattatt atttattcgt ttgttgtgct tgttgcattg
    18601 cgcgcaaatt ttttatttgt tcgcaaattt gaattatacc cattaaagcc aagtgatagc
    18661 caaaaggacc aaaaccaaca atagttccag aacatacagg cgctataaga cttttttgac
    18721 gaaattcttc tctgcgataa acattgctaa tatgtacttc aattgtaggc aaagctactg
    18781 ctgcaatagc atcgcgaata gctactgaag tatgagtata gcctgctgca ttgataataa
    18841 ttccatcaac tgttccaagg cattcttgaa ttttatctac gatttcacct tcaaaattac
    18901 tttggaaaaa gtcaagttct acattatttt gcgatgctgc aagtttcatt tgctcgtgaa
    18961 tttcttccat tttcatagca ccataaattc ccacttctct tacgccaagc atattaacat
    19021 ttgggccttg gataatcatt attttcatgg atttaacctt aaaaatttat ttttaacctt
    19081 ttattataac attttaaaaa taaatttttg ctacaatgta atttttgaaa ggaaaatcgt
    19141 gtttatagtt gctgcaagat atcttttttt atgcgatgaa gattttacaa tactagaaaa
    19201 tcaagccttt gtttttgaag ataaaatttt agaattgggt gaattggata atttaaaaaa
    19261 aaaatatcct aaggctaaaa tcatcaaaac acctaaaaat tcggttattt tacctgcttt
    19321 tataaatcct cacacacact tagaatttag tgcaaattca acaactttac attttggaga
    19381 atttttaatt tggcttaaaa gtgttataaa ttctcgttcc atattaaatg cacaggccaa
    19441 agaagaatta atacttcaaa gcattaaaaa aatgcaaaaa agtggtatag gcactatagg
    19501 tgaaatttca agttttggga gtgatttaga tccttgctta aaggctagtc acaagggtat
    19561 gcgtatagta ttttttaatg aaattttggg tacaaatgaa aatcaagttg aagataaaaa
    19621 acaagaattt ttaaaaagat ttgaaaattc tttgaaattt aaaaatgatt tttttatccc
    19681 ggcaatttcg attcattctc cttattcaac tcatcctagt ttggctcatt ttgctcttga
    19741 tttagctaaa aagcaaaatt tactagctag tacgcatttt ttagaaagta aggctgaaaa
    19801 tatctggctt agagagtcta aagggggttt taaaaaatgg cttgaaaatt tcacacttca
    19861 tcctaagcct ctttatacac caaaggattt tgttaaactt tttaaaggag taaggactct
    19921 ttttacgcat tgtgtttatc taaaagaata tgaatggtta gataaaaatt tacattctat
    19981 tacacattgt gcattttcaa atcgcctttt aagtcaaaaa agcttagatt taaaaacggc
    20041 tttaaaaagt ggattaaata tccatttagg aaccgatgga cttagctcaa atatttcatt
    20101 gtctttactt gatgaaatgc gcgcgaattt gcttatacat aagaattttg atttattaga
    20161 gttagcctct aagcttttgc aaatggtaac actttatcct gcaagggctt taaatttaaa
    20221 tttaggagag cttaaaaaag gtaaaattgc tgattttaac gtatttgagc taggagaatg
    20281 tgataaaaag caagctcctt tgcagtttat tttaaatgct aaggaagtgg ataaattatt
    20341 tataaaagga aaagaatgca aattttaaaa tcatttttta aggctttagg atgcggtata
    20401 aaatttatca atacttattt taaaaccttt gttttattgt tgattgttat atggatttta
    20461 atacctagtg caaattcaag ctctaatctt gcaaatttag aacgcattga tttaaagggt
    20521 gaaatttttg acagctctgc ggttttggaa aaaattatca atgctaaaaa tgatagcaat
    20581 atcaaaggag tgctttttgt tatagactct cctggtggag cttttgctcc tagcatggaa
    20641 ctagctctag ctataaagga tttaaaaatt aaaaagcctg tgcttgttta tgcaagcgga
    20701 actatggcaa gtggaagtta tttagcagga gttggagcaa ataaaatttt agccaatccg
    20761 gcaagtttta taggctctat cggtgtgatt atgcaaggag ctgatttaag cggattggct
    20821 aataaactcg gtattaaaga acaaactatt caagcgggtg aatttaaaag tgctggaact
    20881 tttgcaagag cttggaatga gaatgaaaga aattttttac agggtttaat tgatcaaagt
    20941 tatgatcttt ttacaggttt tgttgccaag gaaagagcat tagatcttaa taaaaaagat
    21001 caatgggcaa atgcaagagt gtttttagct gccaaggcta aggagcttgg tcttatagat
    21061 gagcttggta attatgaaaa tgctaaaaag gagcttgaaa aacttgctaa tgtttcaaat
    21121 cctgtttgga aagaagaaga taagattgat aaatttctta accgcctaga aggacaaaca
    21181 tcaagcttga taagtaaaag cttaatcgaa atcgcttata aaactaatag cagttttata
    21241 aacgctagat aaaatatata aatattttta tttaattttt gtaatatttt tatgcaataa
    21301 ttatttatat cttagataag gagtaaaata atgaaaaaaa atattgtttt tttcgaagtt
    21361 aaaggtggga gtgataaagg tgaagatggc tatagaaaag ataccatgcc tatggtaaat
    21421 gccttaaaag ctaagggttg gaatgctgag gtgatttttt ttgaagtggg taaaaaagat
    21481 gaaatttaca aatatgtgaa agaaaatttt gatggttatg tttctcgcat caatcctggc
    21541 aatcttaaag aagaaaatga gtattttgat atgttaagaa aactttatgc cgataagctt
    21601 gtaggcatgc ctcatcctga tgctatgata ggttatggcg ctaaagatgc acttacaaaa
    21661 ttagcagata ctgatcttgt tccaagcgat acttatgctt actatgatat taagactttt
    21721 aaagaaaatt ttccaaaaag tttggctaaa ggtgaaaggg ttttaaaaca aaatcgtggc
    21781 tctacaggag agggaatttg gcgtgtgagt gtagagggta atgttagtgg agatagtttg
    21841 cctttaaaca caaaaatcaa atgtacagaa gctaaggata atcatgtaga acatagagag
    21901 cttggggaat ttatggattt ttgcgagcaa tatatcatag gtgataatgg tatgcttgtg
    21961 gatatgactt ttttaccgcg cattaaagaa ggtgaaatca gacttttaat gctttataac
    22021 acccctgtaa atgtagtgca taaaaaacca gccgaagatg ctgatgcttt ttctgctacg
    22081 ctttttagtg gggcaaaata tcgctatgat aagccagaag attggaaaac tttggtggat
    22141 atgtttttag gcgagcttcc taaggtaagg gaaaaattag gcaattacga cttaccattg
    22201 atttggacgg ctgattttat tttagatact gatgaaaagg gcaatgataa atatgtttta
    22261 ggcgagatta attgttcttg tgtaggtttt acttctcatt tagaacttgc tgatgaagta
    22321 gcttcaaata ttattaatat tgtaagtaaa actaaggctt agtctttaag cttaatgtcc
    22381 attttattat tgcaaaatgg acattctttt tctattgttt ttaagtttga gctatattct
    22441 atcgagaaaa aattttcaca aaatgagcat tttgtatctt tggttagcat aggataggaa
    22501 tagtcaaatt tatccaaaat aaaat
//
LOCUS       DAQSLY010000015        22274 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.015, whole genome shotgun sequence.
ACCESSION   DAQSLY010000015 DAQSLY010000000
VERSION     DAQSLY010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.015"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..700)
                     /locus_tag="R2H98_000452"
     CDS             complement(<1..700)
                     /locus_tag="R2H98_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEE9023370.1"
                     /translation="MIKNNTFSIIEHQVFSKEDLEEIFKEKVEGFYKELEDFAKNNEN
                     LLGFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYEL
                     DNISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKQNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKT"
     gene            complement(687..2111)
                     /locus_tag="R2H98_000453"
                     /pseudo
     CDS             complement(687..2111)
                     /locus_tag="R2H98_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894998.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            2329..2928
                     /locus_tag="R2H98_000454"
     CDS             2329..2928
                     /locus_tag="R2H98_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEE9023371.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            2939..3187
                     /locus_tag="R2H98_000455"
     CDS             2939..3187
                     /locus_tag="R2H98_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEE9023372.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(3279..3353)
                     /locus_tag="R2H98_000456"
     tRNA            complement(3279..3353)
                     /locus_tag="R2H98_000456"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3319..3321),aa:Asn,seq:gtt)
     gene            complement(3446..4693)
                     /locus_tag="R2H98_000457"
     CDS             complement(3446..4693)
                     /locus_tag="R2H98_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEE9023373.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(4690..5364)
                     /locus_tag="R2H98_000458"
     CDS             complement(4690..5364)
                     /locus_tag="R2H98_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEE9023374.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(5440..6858)
                     /gene="htrA"
                     /locus_tag="R2H98_000459"
     CDS             complement(5440..6858)
                     /gene="htrA"
                     /locus_tag="R2H98_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEE9023375.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKNGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            7059..7952
                     /locus_tag="R2H98_000460"
     CDS             7059..7952
                     /locus_tag="R2H98_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HEE9023376.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLNTLDEKFIELLKEKLP"
     gene            7968..8342
                     /gene="hspR"
                     /locus_tag="R2H98_000461"
     CDS             7968..8342
                     /gene="hspR"
                     /locus_tag="R2H98_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEE9023377.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQNK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            8349..9974
                     /locus_tag="R2H98_000462"
     CDS             8349..9974
                     /locus_tag="R2H98_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEE9023378.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            9984..10316
                     /locus_tag="R2H98_000463"
     CDS             9984..10316
                     /locus_tag="R2H98_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023379.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            10313..10933
                     /locus_tag="R2H98_000464"
     CDS             10313..10933
                     /locus_tag="R2H98_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEE9023380.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVNLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            10989..12983
                     /locus_tag="R2H98_000465"
     CDS             10989..12983
                     /locus_tag="R2H98_000465"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEE9023381.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKKFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            12980..13801
                     /locus_tag="R2H98_000466"
     CDS             12980..13801
                     /locus_tag="R2H98_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEE9023382.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAAIGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            13798..14748
                     /locus_tag="R2H98_000467"
     CDS             13798..14748
                     /locus_tag="R2H98_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEE9023383.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(14745..15719)
                     /locus_tag="R2H98_000468"
     CDS             complement(14745..15719)
                     /locus_tag="R2H98_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEE9023384.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPHLKHLAFRAFDEVAMIKKELRSL
                     GVKTVVLNSGVPTTLSALKQNISYEKYEASRVNGKKLYHKDFLNYAIKLFHMEEKKAI
                     KEVGAMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            15775..16548
                     /locus_tag="R2H98_000469"
     CDS             15775..16548
                     /locus_tag="R2H98_000469"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEE9023385.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLHNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            16545..17639
                     /gene="pdxA"
                     /locus_tag="R2H98_000470"
     CDS             16545..17639
                     /gene="pdxA"
                     /locus_tag="R2H98_000470"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEE9023386.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEKLSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFIKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(17629..18231)
                     /locus_tag="R2H98_000471"
     CDS             complement(17629..18231)
                     /locus_tag="R2H98_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023387.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPILSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            18350..19549
                     /locus_tag="R2H98_000472"
     CDS             18350..19549
                     /locus_tag="R2H98_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023388.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            19605..19925
                     /gene="ciaC"
                     /locus_tag="R2H98_000473"
     CDS             19605..19925
                     /gene="ciaC"
                     /locus_tag="R2H98_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEE9023389.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            20109..21131
                     /locus_tag="R2H98_000474"
     CDS             20109..21131
                     /locus_tag="R2H98_000474"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEE9023390.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            21128..22030
                     /locus_tag="R2H98_000475"
     CDS             21128..22030
                     /locus_tag="R2H98_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEE9023391.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(22027..>22274)
                     /locus_tag="R2H98_000476"
     CDS             complement(22027..>22274)
                     /locus_tag="R2H98_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023392.1"
                     /translation="QLKQELSKETYRLILLDYELIKFDLEQMRNLLSAYKKQHPQSHI
                     IFFSKEKVRDFDCVSEVLSDVSRNDLITLLRKYLPKA"
BASE COUNT         8006 a         3392 c         3135 g         7741 t
ORIGIN      
        1 ttgtttttga ttttaaaaaa tttagcgttg attttatcaa acgattgggt gctatatcta
       61 aaacaaactc atcgttgctt gtaaaaaatc tttctttgtg tatcaaattt tgcttgatat
      121 gctcgttaaa tagtaatttt ccctttaaaa aagccctatt ttcttcgcaa cttagataag
      181 atctcatcaa gcctttttta tacacgctat caaattcatc taaaaacata gtgataaaca
      241 cttcaaataa aggaatttta gaactttgca aagatgaaat ttgtgatttt ttaaaggggg
      301 agttttttaa ggtttttagc atatttatca aaagattttt aggattaaat ttaaaatctt
      361 tttcataaaa atcattattt ttagaaatat tgtctaattc ataacatctt cttagttttt
      421 ctttgtcatg atttgaagaa ctatcttctt ttttataact atctaaattc gtgcattttg
      481 gcaaaatctc caaaaccccg cttttagtct gtataatgcc gacataattt ttagctttta
      541 aggaattttt gtttttaaag cctagaagat tttcattatt ttttgcaaag tcttctagct
      601 ctttataaaa cccttcgacc ttttctttga aaatttcttc taaatcttct ttagaaaaaa
      661 cttgatgctc aatgatagaa aaggtgttat tctttatcat tgtttatttt atttctatca
      721 tcataaattg cttgatatat ttttatatta ttccaaatgt catcatcaaa tgaagcaata
      781 ttataaatac ttctctcgct attaacacta tctagatttt ttattttttg aagatattta
      841 tcatcttttt tatcttcaaa aatcatacca ttatcattta aaaccgcatt aatcaaagca
      901 taatcattat aaaaatactc ttgcaaaagc ggaataattt tattttgaaa aacttttttt
      961 aactttgaga tacttaaaac ataccaatct tcttcatatt catctggctt aatccaatta
     1021 tttttattaa atttaacagc ttcactcata aaaaatgcat gccctatagt tttttctcta
     1081 tctaataaaa attcaattct tttatttata cttattaaaa tattttgaag tatctctgca
     1141 taaccctctg ttttagcatc atctcctaaa taatcttcgt cttcatttgg attttctaca
     1201 tctttacaaa taaaaacatt attaagtaaa tcagaattag gcatcatctc aacaaattca
     1261 aatcttcttc ttaaagctgt atcaagagaa gttatgcttc tatcggctgt attcatagtg
     1321 cctatgatat aaacattttt aggcactccg aatttttcac cactataagg caaagttaat
     1381 tctaatgctt cttcatttcc taatctctta ctaggctcta tcaaggttat aagctcacca
     1441 aaaatcttac ttacattacc acgattgatt tcatctataa tgattatata aggtaaattt
     1501 attttttcat ctttttcttt ataatctttt aaaccttgtg atttcaaata gtttaagata
     1561 gctttaacat atgctgaatt atatatttca tctatattag aagttttata taatttttct
     1621 atattatcta tacttactgg atagtcttta tgatttttgc tcatatcatc aaatttaatt
     1681 ctaaatgttt ttccacctct atattgaata gaatattttg tatttggcaa ttgaaaatat
     1741 ttttcaggat tattggcatc ttcttttgtt ttttctttca agtcatttat ataaaaatta
     1801 aaactttcta tgtcatctct attctccaaa gctttcttgc aaagctcttt aaaaattcca
     1861 tctttaacct tataattaat ttgcgaattt tcatcactat ttaaactagg ctttatacct
     1921 tctacaaatt cttcatatcc gtagctttga tgaaaagtgg taaaaactat ttgtccattt
     1981 tttacatact catcaaattt tgctttttta tcatctctgt tttctaaatt ttcacctaaa
     2041 atttctaaag ctttatctat agtatgataa gtttttcctg tccctggaga cccataaaga
     2101 atttgattta atggtataat tttcatattt gattcctcag attgcactct ttcagttata
     2161 aaaatatctt gttcataata atcaatcaaa aaagctctat aataattcaa tgcactagaa
     2221 tacatattgt gtccattgct attttttaac ttaaattctt catttttatt taatttattt
     2281 ttatctataa tcctttcata caaataaatt tttccttaag gagttaaaat gcttccaaaa
     2341 tgggataaca gctatagtgt gcacaatgct aaaattgatg agcagcataa aaagcttttt
     2401 aaacttgctg caaaagttga agttgtatca gatagatctg taagtaaaaa tgaagtcaaa
     2461 gaacttttgg ctgaattttt taattatatg aaagatcact ttaatgatga agaaaaatac
     2521 atgcagctaa taggctatcc aaatttagaa gaacatcgaa aaatacataa agaaatcatc
     2581 caaaccatga ttaatttaat caaagatatc aaatcaacca atgatcttaa agaaaaactt
     2641 tatatagtgg ctaaaaagtg gcttttagaa cacatactat atgaagacat gaaagttgaa
     2701 aaatggagaa gttcttcttt gtctacagat gatggtggcg atgttagctt tgaagcagca
     2761 gaagatgaag ataatgagca tccacaattt tatctttata cctgtaattg tcctggtaaa
     2821 attcacgatg ttccttatag cattcatcaa aaaatagaat tacaaggtca taaatttact
     2881 tgtaaaactt gtaaacaagc tataaaattt tacaaaaaat attcttaagg aggataaaat
     2941 gaaacgcaat gtaaaaactt attcttttag aatgccttta gagcttaagg agcgtttgga
     3001 taatttaagt aaaaatcttt ctaaaccaaa atcaaccata gtaaaagaag ccatagaggc
     3061 ttatcttaat gaagttgaag atttttcttt tgctgttaat gccctagaag aacttaaaga
     3121 tggggattat caaaaggcaa gtaaaaaaat agataaaatt gtcaaaaatc ttaaacaaac
     3181 aaaataaaaa actttatcac aatttttttt gtgataaaga cttattaatt ttttatatta
     3241 aaatacattt atgaatatta aaaatggagt taaaaaagtg gctccggatg taggattcga
     3301 acctacgacc aatcggttaa cagccgacta ctctaccgct gagctaatcc ggaatattta
     3361 aaagtaaaat gtgattatag tgaaattaaa aaactttgtc aagggttttt tcacaaaaat
     3421 gcatttttta tgtaaaaaaa ttaatttact ccttaacaat aacacttttt aaatttctaa
     3481 aataaaacaa atttacccca tcttcatata aataatcaag cttcattcca tgtgtttcta
     3541 aaatagtatt tacaatataa agccctaatc caaaacttga tttttgtttt gatccttgag
     3601 taaaagcttg agtatagtat tctaaagtat tgttaagctc aggaccacga tttttaaaac
     3661 aaatataatc atctataata tcaatttgca caaacccatc ttcagaatgt ttaataccat
     3721 tatctatcat atttttaatc gccgtagtaa aaagtttaaa atccacattt acaaaaaaac
     3781 tttcttccat aaaaatacgt atattgctat catctcgcat tgcaatttct ttggcttcat
     3841 ctaaaacatc taaaatattg tatttttttc tatttataaa agcagcccct gaagtaattt
     3901 gctcaatagc agcaaattca ttaattaaaa tttcaagtct agtaaaaacc ccatttaagc
     3961 gctctttata tttattatct tctatcattt ctaaagttaa gagcccttta gtaataggag
     4021 ttttgagttc atgcataata tttcttaaaa aaaactgacg agattggttt aactttcgaa
     4081 tttgaacaat agcttgataa aaagcttcac ttacttgtga aatttcatcc accccagtgc
     4141 ttacatcttc tatatcacca agctttcctt gggcaaattt atcaatttgt tttttaagtc
     4201 ttttaagtgg ttttaatttt ttaaatatat aaatataaag caatacaaga atacaaatca
     4261 cagctacagc tatagctttg ataataaaat acctataggt ttgataatct tgatccttat
     4321 aaagataaac ctttccatca taaataatat ttaaatacac ctgtctatta taagaaataa
     4381 tctcgattaa gccattgtta acctcaaccc tagctaaaac atcacctcta aaaagaattt
     4441 tacggatctg ctttgcttct gttatctcat ccattttatt ataatttttt gtctgctctt
     4501 caaattcttt ttcactgata actcctgcaa aatttaagag ccttgcatta gctatcaaag
     4561 aatattttgt gtttaattct ctagtataat tttgctgatc gtattctata agccacaaaa
     4621 agccaagtat aacactaacc ccagcaaaaa taaaaataaa agttatagta taaaaaatcg
     4681 aagatttatt cattgagtaa gcttataacc tattccacgt atagagtgaa tatattttgg
     4741 agtttttgga tcatctccca tcttttgacg aattctactg ataataacat ctatactttt
     4801 attactagaa tcctcactaa tagaagaaca attataaaca agctcttcac gacttaccac
     4861 tccaccctct tttttaatca aatagcttaa aatatcaaat tcagcattag ttaaagtaag
     4921 ctcttgtcct ttcatggtaa taatatgctt atattgatca taaacaagat cttttacgct
     4981 ttttgctatg gcgctttttg tatttgaaat acgtcttaaa tgacttttaa tacgtgcttg
     5041 taattctttt ggattataag gttttggtag gtaatcatct gctccaagct ctaaagcatt
     5101 aaccttatct gtaatatcat gtcttgcgct tgaaacaata ataggcgtat catacttttt
     5161 acgaatctct tcacacactt caagcccatc aagccctggc aaagaaaggt ctaaaatgat
     5221 aagctgatat tcttttaatg caagcttaga aagacctata taaggttcat gagctatatc
     5281 aactttcata tcaaattttt ccaaatattc agctgtaatt tctgctaatt ctaaatcatc
     5341 ttctatcata agaatatttg tcatagtttt cctttatttt aaacttaatt ttaattttaa
     5401 actaaaattt ataacgaaag gaaaatcctt ccgttatttt tatttaagca caagcaaagt
     5461 cgcaaaacca ttgcgatata cccaaacttt ggtaaattct tttttattaa cttgttttaa
     5521 agcttgttct aaatctttta aatttttaat ttcactttgt ccaacaccta tgataatatc
     5581 accctcttgg aaaccagaat tttttccttt gctcttttct ttaacactat caaccaaaac
     5641 accattaaca tcttttggaa tttgcaaacg atccttaagt cttggatcta aatttctcaa
     5701 actcaaacca tcaatcaaat cgctttgtac gcctttagga ttttcttttt cacctttaag
     5761 aataaaactt gcttgcttat tttctccatc tctttcgtaa cttaatgaaa ttttttgacc
     5821 aatctctaaa gttcctatat aatttttaag atcaatagga ctttttataa ccttatcatt
     5881 aactttagta actaaatctc cacgcttaag ccctgcttca tcagcacttg aacctttttg
     5941 aacatcagtg attaaagctc cttcttgatt tttgtaagct tttttagtat caccttgcaa
     6001 agctaaaata gtcacaccta aaaatcctct atcaatcttg cctttttcaa taagtttttt
     6061 agctatatct ttaaccatat ttgaaggtat ggcaaaacct atgccgttat ttccaccacc
     6121 acgagaaaga atagctgaat taatacctac taaatatccg cgactatcca ccaaagctcc
     6181 acctgaattt cctggattga tagaagcatc tgtttgtata aaattttcat attgatttaa
     6241 acctatattg tctttattta aagcagatat tatcccactt gtaacactaa aaccaactcc
     6301 aaaaggattt ccaagtgcaa aaacaacatc tccttccatt aaatcatcag aatttgtaaa
     6361 agtaatagct gaaagattat tagcctctat ttttataaca gccaaatctg tttttggatc
     6421 tttacctata agttttgctt tatattctat gtcgcttcct ggtaaattca ctgtaatcgt
     6481 atcagcatca tctacaacgt gattatttgt tactatataa ccattttttg aaataatcac
     6541 ccctgatccc aaagaactca ccacttcttt atcatttttt ccttttcttt gaggaaaatc
     6601 aaaatcaaaa aattgtttaa aataaggatc attaaaaaaa tcatccaaag ggcttggacg
     6661 atttgctctt gtaatagttt ttgaggtgga aatattaacc actgattttt ttgcatcttt
     6721 aatagaatca tgataagaaa gcactgcatt tccagcagca ggattcacac gattagccgt
     6781 tgcagtcgat tcgttaaaat taatacttgc agcaaataaa gcacttgcta aacttaatga
     6841 taaaaaaatc tttttcattt tatttccttt tgttcttaaa gataaattat ctcgtaaaat
     6901 attttactgt cttcatagta taaaaccgaa aatttacaaa attgtaaata aaaccttgag
     6961 tgataaaaat ttataaaact tgattgactt aggctaaagt ttatgttata atttaatcct
     7021 ctataataat caagtaaaaa tttttaagga aatataacat gaatagttta tacgaaactc
     7081 ttggagttag caaaaacgct agtgcagatg aaataaaaaa agcttaccgt cgcctagcta
     7141 gaaaatatca tcctgatatc aacaaagaaa aaggtgctga agaaaaattt aaagaaatta
     7201 atgctgctta tgaaatttta agtgacgaaa aaaaacgagc tcagtatgac caatacggcg
     7261 attctatgtt tggtggacaa agttttcatg atttttcaag aaatactggt ggggtaaatt
     7321 tggacgatat tttaaaagat ctctttggag gaggctttgg tggacgctca agagggggtt
     7381 ttaacggctt ttcttcaaaa ggctttagca gtggttttgg aggatttgga ggttttgaag
     7441 aagaaatttt agacagcaat ctagagcttc acattccttt cgaaaaagct gttaaaggcg
     7501 gggaacatag ttttaatttt caaggcgaaa ccattaaatt taaaattcca cacggtataa
     7561 aagaaggtga gaaactaaga attcgctcta aaggaaaaca aagcagaaat ggagctagag
     7621 gtgatttaat cattattgta aaaatagaag aaagtcctat ttacacaaga gaagatgatg
     7681 atttatatca aaaagttgat atttctttaa aaactgcact ttttggtgga aaaataaata
     7741 taaaaacact caaagaaggc aaggaagaag cgacaattaa cataacgcct aattcaaaaa
     7801 ataaccaaaa aattcgttta aaaggttatg gtgtgcaaaa tagaaaaagt gatatttatg
     7861 gggatatgta tttgatttta aatgttgttt tgccaaattt aaataccctt gatgaaaaat
     7921 ttatagaact cttaaaagaa aaattacctt aaagaaagga ataaaatatg gaacagcatt
     7981 atgatgaacc tgtatattta atcagtgttg tggctaaagt tttaagcata catccacaaa
     8041 ccttaaggca atacgaaaga gaaggattga tagagccaag tagaaccgat ggcaaaataa
     8101 gactttattc tcaaagagat attgaccgta ttaaacttat attgcgttta acaagagaca
     8161 tgggaatcaa tcttgctgga gtagatgtta tcttaaaatt gaaaaaccaa cttcacgaat
     8221 ttgaaaattt aattgatgaa ctacgcttag aattaagcaa acaacaaaat aaagaagcgg
     8281 ctagtaaagc cgttgttaag cataaaaata gctttgattt gattttttat gagaaaaaat
     8341 aaaaaataat ggataatttt ttagaaattt ttttaatcac cgttgctata gctatagttt
     8401 taaatgtcat atttaaaaaa tttgaaattc caactatcat tggatatata gctgctggag
     8461 aaatcatttc tgaaatttat catttaagtg gcaaaggcga aatcactcat atagccgaat
     8521 ttggtatagt gtttttaatg tttaccatag ggcttgaatt ttcttttaag catttaatgg
     8581 caatgaaaca agaagttttt ttaaacggct ctttgcagat gcttacttgt ggctttgttt
     8641 ttatgttact tgctatagga attttaggac ttggagataa aagcgctact atagtaggct
     8701 ttgcactagc gctttcttca accgcagtgg tgcttaaaat tttaaatgat aatggcgata
     8761 tcaatgagca atatggtaga aaagcattgg gaattttgct ttttcaagat atagccgtta
     8821 ttcctttgct tttgcttgta gatatttttt catccaacaa tcaaaacata gaaaaactcc
     8881 tttttaccac tttaatttca gcacttattt taatcacttt attatttttc ataggtaaat
     8941 atctagtgga tagaattttt agactcatta tccacacttc ttctcaggaa atttttatta
     9001 gtactgtttt atttatggtt attggagcaa gttttttagc aaattatttt ggattttctt
     9061 attctttggg tgcttttata gcaggtgctt tgatagcaga aacaaaatat aaacacaaaa
     9121 tagaagcgga cttgatccca tttagagatt tgcttttagg gctttttttc ataactgtag
     9181 gcatgcaaat tcaacttgat gtagtggcac aaaattggtt tttaatcata gttttaaccc
     9241 ttcttgtaat ggctttaaaa tttggcatag tttttggctt tttatttctt tacaccaaaa
     9301 aaagagtagc gcttaaaaca gcttttgcca tagctcaaat tggcgaattc gccctagcaa
     9361 ttttttctct tttacaagca aaaaatatgc ttgatatcaa aacttcacaa attttaattg
     9421 ttgtttctat tttaaccatg attatcacgc cttttatttt aaacaatata agaaaaatta
     9481 ccaatgttgt agaagatata gcacttaata ccaacgctgt gcaaaatatt gacagcaata
     9541 tcaagcttaa aaatcatctt gttgtttttg gctacggacg cttaggacaa gaagtcgtac
     9601 aaaaaatcaa aaacacaggc gtaccttatc ttgttttaga aagtgattta aatttagtag
     9661 aacttggagt tagtcgaggt gaaaatgtcg tttttgccaa tgctgctcaa gaagaaacct
     9721 taaaaattgc caatatagaa gaatgtgccg tagctattat cacagttaca aatgaagcca
     9781 aacttgaaat tttatgtcaa gtgctagcta attatccaaa acctatagac accatcattc
     9841 atgtaaatgg aactttaaaa aagatgcttt tttctagcat agatgaaaat atacgcatca
     9901 ttcgctctga aaaagtaatc gctagaaatt tagttcaaga agcgctagaa tgccgcattc
     9961 acaaaaatac ctaaggaaga attttgacaa aaaatgaaga aaaagcctta cgcgtaaaat
    10021 acctaagaaa tcttgaaaaa tttttcaatg gcgctatatc tgcacttaaa aaagaagatt
    10081 ttgataaaac taaatttgaa gaaagaatgt taaaaaatgc taaatttttt gaaaaaaatc
    10141 ccgcggtaaa tcttaactca acctatgcaa aaaatcttga attttttgtc aatgcttgtt
    10201 tagatttttc caaagaaaaa aacgagcttt taaatcttgc caatgcttta gataagcaaa
    10261 aaaaacaagg tgggaaaaaa gaaaaacata aaaattattt aaaggattat gaatgattaa
    10321 tgtatttttt gatatggatg gaactttaat cgatagtgca aatgccattt cttgtgcagt
    10381 caatgaaata agacaggatt taaatctagc cccactttca agagaaatca ttatgcaaac
    10441 catcaatact cccaatattg actgggcaaa agaactttat aatatagaaa atttccatca
    10501 ttctaatttt aaagaaggct atgaaaaata ttttgtcaag cactatgaac aaagcgtggt
    10561 gctttttgaa ggagtaaaag aacttttaga atttttaaaa agcaaaaatt gttttttagc
    10621 tattgctact aacgccccac aaagctcact ttcaaacata cttaaaaaac acgatatcat
    10681 tccttatttt gataaaattt taggcgtaaa cttgggcata gaacccaaac ctcatcctat
    10741 gatgctagag cttttaaaaa gcgaggctcc atataaaaca agcgttttta taggagatag
    10801 tcaaaaagat aaagaatgtg ctaaaaatgc taatttgcct tattttcatg ccaaatggta
    10861 tcaaaaaaat ttaaaagaaa atgaatttag caacgctagt gaacttaaag gctttttgca
    10921 aaagtattta taagtttttt aatgaaattt tagttaaaat tagaaataaa ttttaaaaag
    10981 agtaaattat gagtgaatta ttaatagaaa ttggtacaga agaattacct gctattcctt
    11041 tgctaaaaga attagctaat atagaaaaaa aatggaacaa tgttttagaa gaataccgct
    11101 tggtaagtga ttttaaattt tattatactc cgcgtcgttt agtttttttt catgaaaatt
    11161 ttgcagacaa acaagaagat agctttgctg aatttatagg agcacctaaa aatgttgctt
    11221 ataaagatgg agttttaact cctgcgggac aaagcttcct gcaaaaagca aggatcagtg
    11281 aaaatgaact ctcttttaaa gaaatcaaag gcaaggaagt tttgtaccat caaaaagcta
    11341 ttaaaggttt gcaaagtcaa gaaattttag gagaaatggt agaaaaattt ctaaaaagtc
    11401 ttagttttgg caaaagtatg cgctggggtg caaattcttt tgaattcatc cgtgcgatcc
    11461 gttctatagc ttgcatttta aatgatgaac ttgttaattt tcaaagctat ggagtaaaaa
    11521 gtactaaaaa aactttcatt cacagaagcg taagttatga tttgcaagat tttaacaatg
    11581 caaaagaata ttttgaacta ctagaaaaaa actatatcat ccttgatcca atcaaaagaa
    11641 aggaaaaaat acttgagcaa tttaaactca tagaaagtca aaaaaatata caaattggag
    11701 aagatgaaga gcttttagct gaagtagttg ctatcacaga atatcctaat gcacttttag
    11761 gaagttttga agaagaattt ttagaaattc ctagcgaagt aatcatcact tcaatgagag
    11821 aaaatcaacg ttattttgca gtttttaacg acaaaggctt aagtaatcat tttatagtag
    11881 taagtaatgc agtatgtaag gattattcaa aaatcataca tggaaatgaa agagttttgc
    11941 gtgcaagact tagcgatgca atgttttttt atcaaaatga tttacaaaat ggcttaaaac
    12001 ccgaaaaact tgccaaaatg acctatcttg aaggtttagg cacaatgcaa gataaaagtt
    12061 taagagagat taaaattgct gaaattttat gtcaaatgct ccataatgat aaaatcgaaa
    12121 atatcagcac agcactaaaa tacgccaaag cagacttagc cacacaaatg gtttatgaat
    12181 ttactgattt gcaaggcatt atgggaagtt attatgcgca aaaaatgggc ttagattatc
    12241 aaatttgctt agccatcaaa gaacaatatc ttcctaattc cgaacaagct ccacttccaa
    12301 gtacagaatt ttcaagcata gtagcccttg caaacaagct tgataccctt ataggacttt
    12361 ttagcatagg aaaaattcca agcggaacaa aggatcctta tgccttaaga agagctgcca
    12421 atgggatcat taaaattgct ttaaatttaa ataaaaaatt tgatatccaa attttattag
    12481 aaaaactttc aaatcattat aaaagctttg atatgcaaat tttaaaagat tttatttttg
    12541 aaagacttta tactttttat acagtcaatg cttcttttgt aaaagcggtt ttaagctcac
    12601 aaaatacaga tcttatccat atcaatcaaa gcgtaaatgc tcttataaaa cttagcaaaa
    12661 aagataattt taatgaaaat tttgcaacct ttaaaagact agccaatatc gccactaaaa
    12721 atcctcataa agttgatgaa agtctttttg ttcaagaagc agaaagtaaa ctttacaaag
    12781 cttttcaaga aaaaactaaa gccaactctt tacaagaaaa acttgaaaat ctttttgcac
    12841 ttaagccttt tattgatgag ttttttaatc aagtgatgat taatgctgaa gatgaaaaac
    12901 ttaaaaataa tcgccaagct ttggtttatg aaatttatgc ggagttttta aaaatcgccg
    12961 atcttaaaga gttaagctta tgaaagcctt atggcttttt ttaagcctta ctctttggct
    13021 ttttggagct caaaatttag aactcatcaa aggtcaagct ttatttttgg agctagataa
    13081 gaaagatttt ttatctttaa aaaataatgg taaaaatatt cccactttta cacatcctaa
    13141 aaatcaagaa aaagttctag ctattttttc cttaccttac aaaaatcccc cgcaaaatac
    13201 aaaacttatc gcattttata aagataaaaa agaagaaatt ttcataaaaa ctttagaagg
    13261 taattataaa agtgaaaaat tgcaagttga aaacaaaaag atttttccac caaaaaccat
    13321 acaagaacgc atcactaaag aattaaaaga agccaatgcg atttatagtt cttatactcc
    13381 aaaagcttta tttaacggtg cttttaatat acctttaaat tcttttatca caagtgattt
    13441 tggcaaagca agaactttta atgaaaaagt agcaagttat catagcggaa cggactttag
    13501 agctgccata ggaacaccta tttatgcagc caattcaggt gtagtaaaaa ttgcaaaaga
    13561 tcgttatttc gcaggaaatt cagtagtcat tgatcatggt tttggaattt attcacaata
    13621 ttatcatctt tctaaaatcg atgttaaaat aggacaaaag ataaaaaaag gtgaacttat
    13681 aggacttagt ggggctacag gtagggtaag tgggccgcat ttgcattttg gaattttagc
    13741 tggaggcaaa caagttgatc ctttggattt tgtatccaaa tttaatgcta tttttcaatg
    13801 aaatttagtg actttttcca tgcttggctc catgaaagct attataaaaa tgctgtaagt
    13861 ataggaaaaa acggagattt ttttactgct gtaagcgtag gaaatctttt tggcacactt
    13921 ttagccaagc attttttaaa tttaatagat aaaaaaattt tacaactccc tttagaactt
    13981 gtagaaatag gcgctaatga aggatattta agtcgtgatt ttttagccgc tttgcttgaa
    14041 ttaagacctg aaattttttc tcaaatttct tttttcgtca tagaaccgca tgaaaaatta
    14101 agaactttac aaaaaaagac tttagaagga gtggaattta ctcacaaaaa tagtcttaaa
    14161 gaatgccatt ttaagaacgc ttttttcttt tgcaatgaac tttttgatag ttttgcttgc
    14221 gaacttatag atcatgataa aatggcattt gtagaaaatt ttaaacttat ttttaaaaat
    14281 atggatgaaa atttaatcac aaaatgcaaa gctttaaatc ttaaaaaagg tgaactcagt
    14341 ttagagcttg aaaatttttt taaagattta aaccaaactt gtgagagatt tatatttgcg
    14401 ggatttgact atggaacttt aaatccacaa agttttagct taagaatcta tcaaaagcac
    14461 gaagttttta gcccttttga agtatcttta aaagattttt tcggcaaaag cgatctaact
    14521 tataatgtca attttactca tcttcaaaaa ctcatcaaag aatatgattt taaaccttta
    14581 gcttttaaaa aacaaagtct tgctttcatg gattttggtt ttgaagattt attagaatac
    14641 acaaaaaata aaaacattaa aacttacgaa agttttttat ctcaagctaa aattttattt
    14701 tttaattttg atgaaaaatt tcattttttc gaatttcaaa aaaactaaaa ttttatattt
    14761 ttcatactcg ctaaacaaac cccctccctt aaaccctcat caatgactag aagtttatgt
    14821 ttatcaaaca aagcataaaa cagcaaacaa cctgcactca aataattttt tctcatcgca
    14881 cctacttctt ttatagcctt tttttcttcc atatgaaaaa gtttaatagc ataatttaaa
    14941 aaatccttat ggtaaagttt tttgccattt actctacttg cttcatactt ttcatagctt
    15001 atattttgtt ttaatgcgct aagtgtagta ggaactccgg aatttaaaac caccgtttta
    15061 actcctaaag aacgaagctc ctttttaatc atagccacct catcaaaagc cctaaaagct
    15121 aaatgcttta aatggggatt tgcaattaaa aaatgaattt taagtttttt atctttaata
    15181 tttatgataa atttaggata tttttttatt aattttttat aagaaataca agatttataa
    15241 taagaatggt aatttttttc ataaaaacta ataataccaa aatcaaaact tttaaaactt
    15301 tttccaaaag aaagctcaca agaagcccct cctaaatcac aatatgcaaa ctctccccaa
    15361 attttaagcc ttcttaaacc tgattgcata cctaaaacac tgatcttagc ttcacttttg
    15421 gcatctataa gcttaaaatc aatcccaaat tcttttttta aatgggcaaa aatttcattt
    15481 gtattgcttg cctttctaaa agctgcagtc gctacagctc tcgctttgct taaatcttgc
    15541 tctttagcta aaatactcaa agtatttttt aatctttgta tggcttcttt agaaatttct
    15601 ccactttgat ttagattttt cgctgcccca ataacaaatt catattcttt taatttattt
    15661 aatttttcgt ccatttgtac tgctcttaaa gtatttgaac caagatctat acctaacatg
    15721 actttcctta tttgatttta tagtataata gcaaaaaagt tctaaaggaa aaatatgctt
    15781 ttaggtgtaa atatcgatca tattgcagtg ttaagacaag ctagaatggt aaatgatcct
    15841 gatcttttag aagctgcttt tatagtagct agacacggag atcaaatcac tttgcatgta
    15901 agagaagatc gccgtcatgc tcaggatttt gacttggaaa atattataaa attttgcaaa
    15961 agccctgtca atttagaatg tgctttaaat gatgaaattt taaatttagc tcttaaactc
    16021 aaaccccacc gcgttacttt agtgcctgaa aaaagagaag agcttactac agaagggggg
    16081 ctttgtttaa atcatgctaa attaaaacaa agcatagaaa aacttcacaa tgcaaacatt
    16141 gaagtttcac tttttattaa tcctagttta gaagatatag aaaaatcaaa aattttaaaa
    16201 gcccaattca tagagcttca tacaggacat tatgcgaatt tgcacaacgc actttttagt
    16261 aatatctctc atactgcttt tgccttaaaa gaacttgatc aagataaaaa aaccttgcaa
    16321 gctcaatttg aaaaagaatt acaaaattta gagctctgtg ccaaaaaagg cctagaactt
    16381 ggcttaaaag tagccgcggg acatggttta aattacaaaa atgtaaaacc cgtagtaaaa
    16441 attaaagaaa tttgcgagct aaatatagga caaagcattg tagcaagatc tgtatttaca
    16501 ggacttcaaa acgctatttt ggaaatgaaa gaacttatta aaagatgaaa aaactagcca
    16561 ttagtatagg cgatataaac ggcataggac ttgaaatttt agtgcgttct catgaaaaac
    16621 taagcaaaat ctgcacacct ttttatttta tccacgaaag cttgcttgat aaagcttcaa
    16681 aacttttaaa tttaaaactt tttaatgcaa aaatcgtagc ttttaaagat ggaaaagact
    16741 atgagtttaa ttttataaaa aaagaaaatt ctcttgaaat ttactctttc taccttcctt
    16801 taggctttaa agtggatgaa aattttgaaa tcaaagccgg agaaatagat acaaaaagtg
    16861 gactttatgg ttttttaagt tttaaggcgg caagttattt tgtctatgaa aaacacgccc
    16921 atgccttgct tactctacct atacacaaaa aagcttggga agatgcagga cttaaataca
    16981 aaggacacac cgatgcttta agggattttt ttaaaaaaaa tgccattatg atgttaggtt
    17041 gcaaagaact ttttgtaggg ctttttagcg aacatatacc tttagctaag gtgagtaaaa
    17101 aaatcacttt taaaaattta agtatctttt taaaagattt ttacaaagaa acgcatttta
    17161 aaaaaatggg gcttttaggt tttaatcctc acgctggaga ttatggagtt ataggcggag
    17221 aagaagaaaa gatcatggaa aaagctatag cctttgttaa tgccttttta cactctaaaa
    17281 aagatgaaaa atttttcaaa aaagccttaa aagatgaaaa tttacaaaaa gaattgcttt
    17341 taaattttaa aggcaagggc gtttatctac cctatccttt agtagctgat acagctttta
    17401 ctaaggctgg tttaaaaaac tgcaatcgct tagtggctat gtatcacgat cttgcccttg
    17461 ctcctttaaa ggccttgtat tttgataaaa gcatcaatgt aagtttaaat ttacctatca
    17521 tacgcgttag tgttgatcat ggcacagcct ttgataaggc ctataaaaat gctaaaatca
    17581 acactaaaag ttattttgaa gcggctaaat ttgcaatcaa tttacattct aaagcttaaa
    17641 tttagcccta gaatcaatca aatcttcttt agctaagctg tctataaaat cttgcaaatc
    17701 tttattggta tttaaacttt gagtgagtaa attttcatat ttatcaactt tatttttaaa
    17761 aatttgctct aaaacttctt tagtctttgt atcttttttt gctctttgca taagttctaa
    17821 taaaacctta atataagctt cttgcatgca atcacttgca ttgagtaaag ataaaatagg
    17881 attttcccct gcttttgtat tttgcatatt ttttatacaa atttttcttt ctttaagcat
    17941 cttttttgaa atggctttaa aatctttttt catcttttta tctgcttttt ttgaaatatt
    18001 ttgatataaa ctactataga tgttatctac taaagcaagt tttttattat caaattcatt
    18061 acgcacacca attttattgc atatcataag ttcatcatca cttttgccat catatttgat
    18121 tttagagcaa tcaaaactag gttttacttc atctttataa ataagctcat caaaactcaa
    18181 agcccctaaa ctcgccaaac ttaaaccaag caataaaata atttttttca ttatttacct
    18241 ttaaaatttt tattttattt tattttaaca aaaaatattt tgaatttttt aaggaaatta
    18301 agcctttatt ttattataat gcgtttttat tttttataag gaacttaaaa tgcaaaatta
    18361 caaaaaagct ctttttgcac tagctcttag tgctttttgt atgggcgtaa ctgaatttgt
    18421 tatggcagga gttttggttg atgttgaagc gtattttagc gtagatgcaa aaaccgcggg
    18481 ctatcttaca accttatatg ctataggtgt tgttataggt gctcctctta tcaccatacc
    18541 tttaagtcgt tttcatagac atacacaact tttaatcaat cttggaattt ttgctttagc
    18601 aaatttcatc atctttttta gccaaaattt ctatcttact gcttttgcac gctttatagc
    18661 aggaacacaa catggggtat tttttgtcat tgccacctta gctgtaagtg ctataactcc
    18721 agatgataaa aaatcaagtg ctctagctat aatggtcaca gggcttactg tagccttagt
    18781 tactggagtg ccgcttggaa cttttatagg gcattatttt ggctttaaat ttatcttttt
    18841 actcattttt atcattacaa gcctagcatt ttttggagta tggcatatga tgcccaaaaa
    18901 tttacatcct agcccaacca gtcttaaaaa tctaatccct gctttttctc atcaaaattt
    18961 gttaaaaact tatactataa ccatttgtag ttgtggggct caatttgttc tttatactta
    19021 tttgcaaaaa atacttgtag aaataagcgg ttttaaagtc caagatacag cttatatctt
    19081 gcttttatat ggaatttgtg caatttgtgg gaatttatgg ggcggaaaaa tagtagataa
    19141 aaaaggtgct attttttctt tgcgtcttat tttaagcata caagttctag tatttttaag
    19201 tgtatttctc accatgcatt ctaaaatttt aatcattttt agcgtagctt tgataggatt
    19261 ttttgccttt tcaaccatac ctgcactaaa aatgcttagc attactaaag ctaaacgcca
    19321 tacttataaa gtcatagaca gtacagtaag tgtgaatgaa gcagctttta atgtaggcat
    19381 agctttagca agttttttag gtgggattgt tttagcaaga ttgggtatag aatttaatgc
    19441 tttattttca gcactttttg taagccctgc tttgattttt gccttgcttt ttgccaaaga
    19501 taaattaaat tataaaaaat ttcaaagaaa aagttttaca aaggtataaa ttggaataga
    19561 aattgcttgc ttatttaatg taaagttaaa taaaggagga gaaaatggta gtagataata
    19621 ctcaaaaaac atcaaatgct atctttagca ccacaactaa agttaaagaa aaaaatactt
    19681 cggcagatga atttcaagcc acattaaatg aagtaaaaaa caaagaagaa aaggaagata
    19741 aaaaaacaaa ctcaagcaaa tttactaacg aagacattga tcttggtgct gttagagaag
    19801 attttagatc ttatgcttgg caaaaaatga gagaagatca atacaaaaaa aatgaggaaa
    19861 ctttgctaaa taagcttttt actacaattg acgcaggaaa tgccacaaac aatacaaagg
    19921 cttaatatac aaatcaatca aaactcaaac tacataaacg agaattccaa taattctcgt
    19981 aaaatttcta ataactctgg ataaaatgaa aaaatttatt atttcctcta tatgaagaaa
    20041 atatagaaaa attgaccaat ttaatttatc aaattctgtt ataattttgc taaaaacaaa
    20101 ggaaaataat gatttttatc gatgcttgct ttaaaaaacc tacaccctac acccctattt
    20161 ggatgatgcg tcaagcagga aggtatttgc cagaatatat ggaagtaaga aaacaagcgg
    20221 gtgattttct ctctttatgc aaagactata aaaaagcttc tgaagtttct ttacagccta
    20281 ttgatatttt agatgtagat gcagcaatca ttttttcaga tatcttagtt gttcctcttg
    20341 aaatgggtat gaatttacgt tttgaaaaag gagaagggcc tgtttttgat aatcctattt
    20401 caaccctaga agatttagaa aaacttgacg atcaaaatgc acataaaaaa ttaaattatg
    20461 tctatgatgc cttaaagctt acaagagaaa aattatctca aaacaaggct ttaataggat
    20521 tttgcggaag cccttggact atagctacct atatgataga aggaagtgga agtaaaaatt
    20581 atgcaaagtg taaaaaaatg ctttatcaaa acccagaact tttacataaa attctaaaca
    20641 aactaactca agttttaaaa ctttatttag aagagcaaat taaagcaggt gctaatgcta
    20701 tacaaatttt tgatagctgg gcaagtgctt tagaatatga taagtttttt gaattctctt
    20761 ttaattatat gcttgaaatt tcaaatttta ttaaaagcaa atacccaaat atacctgtaa
    20821 ttttattccc taaaggcatt agcggttatt tggatagaat cgatggtaat tttgatgttt
    20881 ttggagttga ttggagcact ccgcttgatt tagcacgtga taaactatcg cacaaataca
    20941 ctcttcaagg caacatggaa ccttgtagac tttatgataa aaatgccatc aaagaaggag
    21001 tcggaaaaat actaaaaacc atgcaaaata aagctcatat tttcaactta ggacatggga
    21061 tcttgcctga tattcctgtt gaaaatgcaa aatattttat caagcttgta caagaaagtt
    21121 cagctaaatg aaaatactct ttggtcctgt tagctcaagg cgttttggaa gatctttggg
    21181 tatagattta agccctagta aaaaacaatg caattttgat tgtgtttatt gcgagcttga
    21241 tccaaaaaaa gcccaagaaa aacaggatga aattatcagc atagataaaa ttatctccga
    21301 agttaaagtt atgcttgaaa aaaatgttga atttgatttt cttaccctta ctgccaacgg
    21361 agagcctagt ctttatcctt atttaaatga gcttatttta tctttacgca gcattgctaa
    21421 agataaaaaa ttgcttattt taagcaatgg tacagctgta ttagatgaag acaaatttaa
    21481 tgctttgcta aaactagatg tggtcaaatt tagcctggat agtgcagttg ctaaaacttt
    21541 ttatcgtatt gatagagctt taaaaaacat tgacttagaa aaaatgatag aaaaaatggc
    21601 agattttaga gctaggttta atggagattt gattatggaa attctagttg ttaaagatct
    21661 taatgacaac gaagaagaat ttgaagcact taatcaagct ttaaaaaaaa tcatgccttt
    21721 aagagttgat ctaagcacca tagatagacc tcctgcttat gctgttaaaa aagtaagcga
    21781 agaaaaactt ttagaacttt ctaaacttat agattctact cccgtactct tagccaaaag
    21841 acattatgaa ggtgaaaaac taagcttcaa tgaagaagaa ttattaaaaa tgcttcattt
    21901 gcgctcacaa agcgaaatag acattgaagt gaaatttgat gaacaatcca aaactctctt
    21961 aaatcaactt atcaaagaaa aaaaggtaaa aattctcgat ttagctggag ttaaatttta
    22021 taaagtttag gcctttggca aatactttct aagtaaagtt ataagatcat ttctacttac
    22081 atcacttaaa acttcgctca cacaatcaaa atccctaact ttttcctttg aaaaaaagat
    22141 gatatggctt tgtggatgct gttttttata agcacttagc aaatttctca tttgctcaag
    22201 atcaaattta attaattcat aatcaagtaa aatcaaacga taagtctcct tgcttaattc
    22261 ttgttttaat tgac
//
LOCUS       DAQSLY010000016        20977 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.016, whole genome shotgun sequence.
ACCESSION   DAQSLY010000016 DAQSLY010000000
VERSION     DAQSLY010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.016"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            19..579
                     /locus_tag="R2H98_000477"
     CDS             19..579
                     /locus_tag="R2H98_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023393.1"
                     /translation="MLKQIAFGSIALTATGYGIKKLYEKLSKPERKFDTHAIVPSCKD
                     MINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKEFLEFEQNFTSKNNH
                     KTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKMISESMERKTQRFYL
                     QTKFQTFPQYIFPSVWSSRMWNKQWE"
     gene            570..776
                     /locus_tag="R2H98_000478"
     CDS             570..776
                     /locus_tag="R2H98_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023394.1"
                     /translation="MGIILGILSLIAGFVAIVLMCSLYFIVFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILVLVLWRKT"
     gene            852..1595
                     /locus_tag="R2H98_000479"
     CDS             852..1595
                     /locus_tag="R2H98_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023395.1"
                     /translation="MNNYIHLEELDLKANYADLEKELENLSKKECLRIEIDKGLENSL
                     KELEDLMEKLPEQQTQTLFEQCTKNAMDAVTGHFGLASTILNAKDGGNVTTLHNFEKG
                     IVATEEDLQKLTKYQQGYKRDSNYDKIKDNIRDNSPKIVRSEYTGEEMKKGAGKNKAQ
                     LDHVISLKEIDRDPNMHLFLDDAIRAEIANHPDNLKWLDASANASKGDRDLMEWGKEI
                     DPKTGKTNFEKYGIDEKKLKKFTIQPNQT"
     gene            1667..2533
                     /locus_tag="R2H98_000480"
     CDS             1667..2533
                     /locus_tag="R2H98_000480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023396.1"
                     /translation="MKIFVYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFA
                     RRMEKVWEKIKAKWKDIFKGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTS
                     LYQAVKIIINPPKNIPKDEIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFL
                     SLPIPFTDETIGDALSLCISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLI
                     VQYKIAKTWFALNDAYHIVKNETLATIQQIKKDNQMREQSSQEVETAIEEFENCNITK
                     KLYKKLNQTKEN"
     gene            2533..2802
                     /locus_tag="R2H98_000481"
     CDS             2533..2802
                     /locus_tag="R2H98_000481"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023397.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRTQKAKNLNTDSDWQTYIPIFGRWLGETSEEKKKLNPI"
     gene            2844..3314
                     /locus_tag="R2H98_000482"
     CDS             2844..3314
                     /locus_tag="R2H98_000482"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023398.1"
                     /translation="MTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRL
                     SKAAKEQFQQIQKFTLSFIEDHEKHKDTINNIQVELDKKNQIDDEQYKLIEKHYQEFI
                     QYKNYNDKIVQEQECKINELKDILNKRKNVFTSSISILALIVSVASIVLYFIGR"
     gene            3318..3781
                     /locus_tag="R2H98_000483"
                     /pseudo
     CDS             3318..3781
                     /locus_tag="R2H98_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3788..4093
                     /locus_tag="R2H98_000484"
     CDS             3788..4093
                     /locus_tag="R2H98_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023399.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DSKDQASSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            4102..5169
                     /locus_tag="R2H98_000485"
     CDS             4102..5169
                     /locus_tag="R2H98_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9023400.1"
                     /translation="MNHLLILYNPYCQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSLLRDKFLANFITPNDHTYAIYGNNYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHPDSISNIIHAELELLQSENDLLND
                     FTSIVVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQYHLGKSLTQFINYPFSKSLTLIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
     gene            5166..6037
                     /locus_tag="R2H98_000486"
                     /pseudo
     CDS             5166..6037
                     /locus_tag="R2H98_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
     gene            complement(6059..6134)
                     /locus_tag="R2H98_000487"
     tRNA            complement(6059..6134)
                     /locus_tag="R2H98_000487"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6099..6101),aa:Met,seq:cat)
     gene            complement(6168..6242)
                     /locus_tag="R2H98_000488"
     tRNA            complement(6168..6242)
                     /locus_tag="R2H98_000488"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6208..6210),aa:Gln,seq:ttg)
     gene            6335..7354
                     /locus_tag="R2H98_000489"
     CDS             6335..7354
                     /locus_tag="R2H98_000489"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEE9023401.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7366..7809
                     /locus_tag="R2H98_000490"
     CDS             7366..7809
                     /locus_tag="R2H98_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEE9023402.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            7827..9527
                     /locus_tag="R2H98_000491"
     CDS             7827..9527
                     /locus_tag="R2H98_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEE9023403.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            9524..9988
                     /gene="ilvN"
                     /locus_tag="R2H98_000492"
     CDS             9524..9988
                     /gene="ilvN"
                     /locus_tag="R2H98_000492"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEE9023404.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            9985..10950
                     /gene="lpxD"
                     /locus_tag="R2H98_000493"
     CDS             9985..10950
                     /gene="lpxD"
                     /locus_tag="R2H98_000493"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEE9023405.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(10939..11967)
                     /gene="queA"
                     /locus_tag="R2H98_000494"
     CDS             complement(10939..11967)
                     /gene="queA"
                     /locus_tag="R2H98_000494"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEE9023406.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHDPLFLAQIK
                     GRVKKDEILYFKDDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(11960..12697)
                     /gene="tatC"
                     /locus_tag="R2H98_000495"
     CDS             complement(11960..12697)
                     /gene="tatC"
                     /locus_tag="R2H98_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEE9023407.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            complement(12698..13105)
                     /gene="tatB"
                     /locus_tag="R2H98_000496"
     CDS             complement(12698..13105)
                     /gene="tatB"
                     /locus_tag="R2H98_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEE9023408.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            complement(13164..14231)
                     /locus_tag="R2H98_000497"
     CDS             complement(13164..14231)
                     /locus_tag="R2H98_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEE9023409.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFQALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKALITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            14332..14802
                     /locus_tag="R2H98_000498"
     CDS             14332..14802
                     /locus_tag="R2H98_000498"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEE9023410.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
     gene            14804..16006
                     /locus_tag="R2H98_000499"
     CDS             14804..16006
                     /locus_tag="R2H98_000499"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEE9023411.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSVQQGDQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVSCALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            16007..16543
                     /locus_tag="R2H98_000500"
     CDS             16007..16543
                     /locus_tag="R2H98_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEE9023412.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            16549..17148
                     /locus_tag="R2H98_000501"
     CDS             16549..17148
                     /locus_tag="R2H98_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEE9023413.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYEGYELAKLNSKSGVLLATLLLNYYTKK"
     gene            17150..18292
                     /gene="folP"
                     /locus_tag="R2H98_000502"
     CDS             17150..18292
                     /gene="folP"
                     /locus_tag="R2H98_000502"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEE9023414.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRIGAELITHKEVITAKITHSNALLMASKEQIQKLIAKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPAYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYEAKYCLMHMQNNPNNMQDNPSYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            18293..20236
                     /gene="ligA"
                     /locus_tag="R2H98_000503"
     CDS             18293..20236
                     /gene="ligA"
                     /locus_tag="R2H98_000503"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEE9023415.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELSVFE
                     EQNKDEISKDSPTQKIAPIIQSEFKKIAHLRRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNHTRIDEFYKLLNLKIEK
                     LEIKSDSMIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCINESAFNELVKE"
     gene            20217..>20977
                     /locus_tag="R2H98_000504"
     CDS             20217..>20977
                     /locus_tag="R2H98_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023416.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRISMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFIDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLELFSRKIIAYKSASFVYFDFLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNF
                     FMFCSLLAFVFNFVLKIKIKIIVLFLCFIMVLGNY"
BASE COUNT         7615 a         2675 c         3778 g         6909 t
ORIGIN      
        1 ttaaaacaag gagagaaaat gttaaaacaa atcgcatttg gtagtatagc tcttacagct
       61 acaggatatg gcataaaaaa attatacgaa aaattatcca agccagaaag aaaatttgat
      121 acacatgcta ttgttccaag ctgtaaagat atgatcaata ccgaagaata caaactcaaa
      181 agagagcttg aaatcgaaca aaagaaaaat caaattcaag aatttctttg cgaatgtatg
      241 gagtgttata gcggcttttc aaaatatttt aattctaagg aatttttaga atttgagcaa
      301 aattttacct ctaaaaataa tcataaaaca gaatttcttt tgtcgtctta taaagatcaa
      361 atgataaaag tgatcgacta tgctaaaaaa tttgaatgct tgagtgcttt tttggaaaca
      421 caaagcgaaa aaaatgactt agcggttgta aaaatgataa gcgaaagtat ggagagaaaa
      481 acacagagat tttatctgca aacaaaattt caaacttttc ctcagtatat ttttccttct
      541 gtgtggagtt ctcgtatgtg gaataaacaa tgggaataat acttggaatt ttaagtctta
      601 tagccggctt tgttgctata gtgttgatgt gtagtttgta ttttatagtg tttatggttt
      661 ttgttggcat agcgatactt atttttcttt ctatgcaacc ttatccttat aatataatat
      721 tttgtgctat atatttaatc acaattttag tgctagtgct atggcgtaaa acttaaaaac
      781 ttcacttccc ccttgactgg ggggggggat ttgataaaat acaaaaatta aaaacaagga
      841 attattaaaa tatgaataat tatatacatt tagaagaatt ggatttaaaa gccaattatg
      901 cggatttaga aaaagagttg gaaaatttat ctaaaaaaga atgtctaaga atagaaattg
      961 ataaaggttt ggaaaattca cttaaagaac ttgaagattt aatggaaaaa ttacccgaac
     1021 agcaaaccca aacacttttt gaacaatgca ctaaaaatgc tatggatgct gtgacagggc
     1081 attttggact cgcttcaacg atcttaaatg caaaagatgg tgggaatgta acaacactac
     1141 ataactttga aaaaggtatt gtagcaacag aagaagattt acaaaagctt acaaagtatc
     1201 aacaaggcta taaacgagat tcaaactatg ataaaataaa agataatata agagataatt
     1261 ctccaaaaat tgtacgtagt gaatacacag gtgaagaaat gaaaaagggt gctggaaaga
     1321 ataaagcgca actagatcat gttatttctt taaaggaaat tgatagagat cctaatatgc
     1381 atttattttt ggatgatgca attagggcag aaatagcaaa tcaccctgac aatcttaagt
     1441 ggcttgatgc aagtgctaat gcttctaaag gtgatagaga tcttatggag tggggtaaag
     1501 aaattgatcc aaaaacagga aaaaccaatt ttgaaaaata tggaatcgat gaaaaaaagc
     1561 tgaaaaaatt tacaatacag ccaaatcaaa cctaaaaaag aaagttataa aagaaaaaat
     1621 tgtcaaatat tctaatgaag ttttaagtac aggtgctaaa gattcaatga aaatctttgt
     1681 ttattctgcc tttggagttg tcttaaaaga ttttattgaa gctgttgtta ttgaattaaa
     1741 aaccaccttt agagagtttg gaaaagaaaa tattaaagaa atttttaaac gatttgcacg
     1801 cagaatggaa aaagtttggg aaaagataaa ggcaaaatgg aaggatatat tcaaaggttc
     1861 tttagaagca ggaattcaag catttttttc taatttgttg gtttttatta ttaacactat
     1921 ttttacaact ttaaaaaaaa tagtgcaaat catacgtgca ggctttactt ctctatatca
     1981 agctgtaaaa atcattatta atccacctaa aaatatacca aaagatgaaa tttactttga
     2041 agcatcgaaa atttttgtta gcgggatgat ttctgcaatt tcaatgttag gaagtgaaat
     2101 gatccacaag tttctgctgt caatacctgg atttaatgta tttttgtcac tacctatccc
     2161 ttttaccgat gaaacaatag gggatgccct ttctttatgt atttcagcgg ctggtggtgc
     2221 tgtattgagc actatagcta ttttttatat ggataagtgg agaagcaatt ccaaaattgg
     2281 caatttacaa atacaaattg taactcaaaa aaatttgata gtacaataca aaattgccaa
     2341 aacttggttt gcattgaatg atgcttatca tattgtaaaa aacgaaactt tagcaactat
     2401 acaacaaatc aaaaaagata accaaatgag agagcaaagt tctcaagaag tagaaacagc
     2461 aattgaagaa tttgaaaatt gtaatatcac taaaaaatta tacaaaaaac ttaatcaaac
     2521 taaggagaac tgatgctaga acttatcaca caaaaagatc aagatttttt gcaaaatatt
     2581 gaaaaccttg atgaagaata tattcaaaaa tttattaata aaaaaatcag tgaaatagct
     2641 atagctattg aaacagcagc agagaatgct gataaagcaa aagatagaac acaaaaagcc
     2701 aaaaatctta atacagatag tgattggcaa acttatatac caatttttgg acgttggctt
     2761 ggagaaacat cagaagaaaa aaagaaatta aatccaatat gatccttgaa gtagcagagt
     2821 tacagaatga atcaatgaat caaatgacaa caattctaaa agaagttgta atatttttta
     2881 cttccagttt ttgtattgct acgcgtatga atcaagcttt atctcttatt attgcgcaag
     2941 gttttgtaaa gagcgatggc aaggtaattc gtttatctaa agccgctaaa gaacaatttc
     3001 aacaaataca aaagttcaca ctgagtttta tagaagatca tgaaaaacac aaagatacga
     3061 taaataatat ccaagtagaa ttagataaaa aaaatcaaat tgatgatgag caatataaac
     3121 tcatagaaaa acattatcaa gaatttatac aatataaaaa ttataatgac aaaattgttc
     3181 aagagcaaga atgtaaaatc aatgaactga aagatatttt aaataaaaga aaaaatgttt
     3241 ttacaagtag catttcaatt ttagctttga tagtttctgt tgcgtcgatt gtattatatt
     3301 ttatagggcg ttaatttatg aattttttaa gttctttaaa agataaggcg gtaaatgctt
     3361 cagaagcaat taaagacaaa actattaaga ctgctgaagt tgttaaagat attggaatgg
     3421 aagtaaaatg tgggattggt tggcacgcgg gtgaatatca aaatgaaaaa gataaaccaa
     3481 aatgtttttt tccaaaattt gccctgattg cggaaaatat cttacaaaaa atcaacatga
     3541 ttttgaagct cctgaaatat taaatcctga taattgttat ggatatagac gatgtactct
     3601 ttgttctatt caagtgtttg ataattttca taattattat gaaatcaaaa aagatgcaaa
     3661 atgcagaatg cacgaaaaat gtaatttatg cggacatgaa agattgggac aaacaagaca
     3721 caattggaaa tatgacgaaa acgggcaaaa aatttgtcta gattgcaaag aaacagtata
     3781 aagacagatg ttttctaaga ttttctcatc tcttagcctt gcaaatgcgt ttaaaggatt
     3841 tttatttaaa cgcatttcaa gccctatgca aagtgctcgt attattagta tggttttgga
     3901 tataaaaaat gcttttaatg acagcaaaga tcaagcaagt agtatttgca aaactttgga
     3961 tttgatagta aattttaaaa aagaacatcc gcaggatttt aacgagttgt ttgaaatttt
     4021 aaaagatctc atacaagaat acgagcaaaa tcctaatgaa atcaagcaaa atctcaaaga
     4081 aatcctaaaa taaggcaaaa catgaaccac cttttaatcc tttataatcc ctattgtcaa
     4141 gaagatgtca tcaagcaaca tttaagcatt ttacaagaaa aatcccaagt tgcctttggc
     4201 aaaatcaaat caaaactcaa cgatcaagaa aagcaaaatt ccttagaaga aatttaccaa
     4261 agtacaaatg aagaaaattt cttgcaactt tttttaagcg attatgctaa tttatttgtc
     4321 gctaaagtgg taaaaatttc taaaaatgtc gatgaaagtt tgattcctag ttattataaa
     4381 gaaaaaaatt tagaagtgga agactttttt atcatcagtg atttaagaga attagtcagg
     4441 gaagatttta gtcttttaag agataaattt ttagccaatt tcatcacccc aaacgatcac
     4501 acctatgcca tttatggcaa taattacacc tatcctttgc ctgtgagatt aaaagaagag
     4561 tgttcttatt ttttaggaga tgaaaagcat tatctaagcg tgtataaaag caaagaatac
     4621 ctagccatgc aagaaaattt catacgcttt gtttttggca aaaggatttt ttatctcttg
     4681 caccctgata gcataagcaa tatcattcat gcagaattgg agcttttaca aagcgaaaac
     4741 gatcttttaa atgattttac aagcattgta gtcaaatact ccaaaacctt agaatatgaa
     4801 atttacgctt ttgccaaaaa agttctttta aaagcttgta tgaaagatcc tagcctttat
     4861 gatttagctt ataatgtcca aggcaaatct tttatactta aagatttttt tacccaaaag
     4921 cctaatcttg gaagtattaa atttctactc agacatgaaa atatccaata tcatttagga
     4981 aaaagtttaa ctcaatttat caattatcct ttttcaaaaa gtcttactct cattcaagaa
     5041 atccgtaatg aagccgttca tgcaaaagcc ccaagtttaa atgaagtcaa aaaacttaga
     5101 aatgaaattt taggcataga aggtgtaagc ttgttaaaaa gaattttaac ccacaaggaa
     5161 atttcatgaa agaatacgac aaattaagca tacgcttggt gcagatttta tcaaaattta
     5221 acaatgggga aagtctaagc gcccaagagc ttgcacaaga gtttaatgtc gatacaagaa
     5281 ccatacaaag ggatcttaac gaaagactta cttttatgcc tattaaaaaa gaaaatggaa
     5341 gatatgtttt agaaagcttt gctttgggaa aattaagctt taaagatata caaaatttcg
     5401 ccaccttaag tggcattgct gagctttatc caaaactcga tcaaggcttt atagttgatc
     5461 ttttaagcca tagggtaaat aaagttttga tggtaaaaaa tgaaggtttt caaaaggtgg
     5521 attatgagct ttttaaagat cttggtgtgg ctatactcaa acacaatgtg ttaaattttt
     5581 tctataagga aaaagaacgc caaatcaaac cttacaaact cgtaaattac aagggaattt
     5641 ggtatctttt ggggatgaaa acgataaatt aaaacatttt aatttagata aaatttcaaa
     5701 acttcgcact aaaaatgaaa attttattcc caatgaaaaa cttgaggaac aaatccaaaa
     5761 tgatcctaat atctggcttg gagaaagcaa agaagtgatt ttaaaacttg ataaaaatgc
     5821 taaggaatat ttttttagaa aagaaatact aagcaattgt caaatcattg atgaagatga
     5881 aacaaactat actttaagca ctcaagtttc ctatgaagat gaaattttac atttggttaa
     5941 acagtggatc ccctatataa aaattctagc tcctatagaa ctgaaaacac ggctggagaa
     6001 tattttaaaa agttatttaa acaatctatc taaataaaat ttattttaaa tccataactg
     6061 gttgcgaagg ggagatttga actcccgacc ttcgggttat gagcccgacg agctaaccac
     6121 tgctctactt cgcggcatat aagatctttg aaatataaaa taagaagtgg atggggtaaa
     6181 gggattcgaa cccctgaatg acaggaccaa aacctgttgc cttaccgctt ggcgataccc
     6241 caataaatat tttttaaaag tgtgattata atgaatttta atttatttgt caagcaattt
     6301 aagttataat tttaaaaatt ttgaggaaat aaaaatgaaa tttgttagcg tagaacaagc
     6361 gattaaggat ttacaagcag gaaaaatgct tgttatggta gatgcagaag atagagaaaa
     6421 tgaaggcgat ttaatctttc ctgcgcaatt tagtactcaa gaaaaagtaa atttcatgat
     6481 aaaagaagct cgtggtgtgg tttgtgtagc cttagatgaa actttggcaa aaaaatttga
     6541 acttccttta atggtgccta aaaatacttc aaaccacgaa actgctttta ctataaccgt
     6601 agatgcaaaa gatgctacaa cgggagttag cgcctatgaa agaaatatga ctatacaaat
     6661 ttttgccgat gataatgcta aggcgagtga ttttgtaaga ccagggcata tcaatccttt
     6721 aatcgcaaaa aaaggtgggg ttttagaacg cacaggtcat acagaaggca cggttgatct
     6781 ttgtaaatta gcaggattaa aaggtgcttg tgtgatttgt gaaattgtaa aagataatgg
     6841 agatatggca agaagagaag atctagaaat tttttgccaa aaacatgatt taaatatgat
     6901 agccgtaagc gatcttatag aatatcgcct aaaacatgaa agtcttatta agcttgaaga
     6961 aaaaagtcaa agtgttttag caggctttaa agcagaaaaa tttatcttta gtgatcataa
     7021 tcaaacccaa cacatagctt tttgctttaa agatatcaaa aaatgtgaaa atgttaaatt
     7081 tcatatcagt ggtagtgatt ttgagctttt aacttcagat aaattttcaa aacttttaga
     7141 gcaaatcaaa tttcttagtg aaaatggtgg cgttatagtt ttcatgcaag gagaaaaatc
     7201 cagcaccact caatacaaaa actatggtat aggagcacag attttaagat attttggtat
     7261 agaagaaatt aaacttttat ctcaaagttg tgataaagac tatataggct tagaaggttt
     7321 tggtttaaac cttaaagctt gtaattttaa ctaaaaagga aaaaaatgac tttaaaagaa
     7381 caaattttaa acgatatcaa agaggcaatg aaacaaaaag atgattttaa aagagatagt
     7441 ttaagaactc taaatgcagc ttttaagcaa atagaagtgg atgaaagaat agagttggat
     7501 aatgaaagaa tttataaaat cattgcaagt gaaatcaaaa aacgcaaaga cgcaatcgaa
     7561 ctttatctta aggcaaatcg tgaagattta gcacaaaaag aacaaaatga aataagtctt
     7621 tttgaaattt atctgcctaa acaactaagt gatgaggagt taactttagc cttaaaacaa
     7681 cttatagaag aattgggcgt aagttcacta aaagaacaag gtttggtaat gaaagaagct
     7741 aaaataaaat taggtgcgag tgttgatggc aaaagactta atttagcact taaagagctt
     7801 ttacaataat tttttggagt gttattatga aagagttaag cggttcggca atgatttgcg
     7861 aggctttaaa agaagaaaat gttaaaattg tttttggtta tcctggaggc gctgcgctta
     7921 atatttatga tgaaatttac aatcaaaagt attttaaaca tattttagtg cgtcatgaac
     7981 aagcggcttt gcatgctgct gatgcttacg caagaatgag cggagaagtg ggcgtagcta
     8041 tagttacaag cggaccaggt tttacaaata ctattacagg tctagctacg gcttatagcg
     8101 attctatccc tttggtgttg atttcagggc aggtggcaaa ttctcttatt ggtacagatg
     8161 cttttcaaga aattgatgca gtaggcattt caagaccttg tgtaaagcat aattatttag
     8221 ttacttgtat agaagagttt ccacgcattt taaaagaggc tttttatata gcaagaagtg
     8281 gtagacctgg gcctgtgcat atagatgtgc caaaagacgt aagtgcaact ttgggacttt
     8341 gggaatactc taaagaaatt tccatgaaga cttataagcc cgtttataag ggtaactcaa
     8401 agcaaattaa aaaatttgca gagcttttaa aagaagcaaa aagacctttg ttttacttag
     8461 gtggaggttg catcagttct aatgcaagcg agcaaatcag agagcttata aaatttacaa
     8521 aaattccagc agttgaaact ttgatggcgc ttggaacttt aagaagtgat gatgttttta
     8581 atcttaaaat ggcaggtatg catggaagct atgctgctaa tatggcttta agtgagtgtg
     8641 atttgcttgt gagtgtagga gcgagatttg atgataggat tacaggaaaa acaagtgaat
     8701 ttgctaaaca tgcgactata gttcatgttg atattgatcc tagttctatt tcaaagatta
     8761 tcaatgcgca ttatcctata gtaggagata ttaaagaagt tcttaaagag cttttagaag
     8821 agcttaaaaa ggaaaatttc aacacaactt ttaaagaatg gcacgaaact ttaaagcgtt
     8881 ataatgaact ttatccgctt tcttatgaag atagcaatga gattttaaaa ccgcaatggg
     8941 tgattgaaga atgtgcgaaa atggctccag atgcaaggat tattaccgat gtgggtcagc
     9001 atcaaatgtg ggtggcacag ttttatcctt ttaattatcc aagacaactt gcaacaagtg
     9061 gagggcaagg aactatggga tattctttac ctgctgcttt gggtgcaaag cttgccgtgg
     9121 gtgaagaagt ggtgattaat ttcgtaggtg atggatcggt tttaatgaat atccaagagc
     9181 ttatgactgc ttatgagtat ggtataaaaa ctataaatat tattttaaat aatgcctttt
     9241 taggtatggt aagacaatgg caaagtatgt tttataaaga gcatttttca caaactgatt
     9301 taagcactca gcctgatttt atcaaaattg ctcaaggttt tggttgtgaa ggttatgaaa
     9361 tttcaagcaa agaagaattc attcaagctt ttagccaagc tttaaaaagt gataaaacct
     9421 ctcttttaaa tgtaaaaatt gatcgctttg aagatgtttt acctatggtg cctgcaggag
     9481 gtgcgattta taatatgatt ttaccaaagg caaaggatag acaatgagaa gggttttatc
     9541 ggtaattgtt ttaaatgagc atggggtttt atctcgtata gtaggacttt tttcaggaag
     9601 aggttataat attgactcgc ttacagtagc acctttggaa aataaagaat tttctcgtat
     9661 taatatagtc acctcaggaa atgaaagaac ttttgagcag atagtcaaac aacttcataa
     9721 gctcattcct acttataaag tgatagaaag tgaagaattt attgacaaag aaatggcttt
     9781 agtgaaaatt cctttaaatg aaaatttagg tggacttgat gccgttttga aagcttataa
     9841 tggtactatt gcaaatagca atgagaattt tttgttttta atggttgctg atgatgcaaa
     9901 tcgcattgat aattttttaa aaacaattaa aaaatacaat cctagtgata tagttcgcag
     9961 tggatctgtt ttgatggaga ttaaatgaaa ttaagtgaaa tagcagaatt tttaagcttg
    10021 gaatataaag gcgaggatat agaaatcagt gctttaaatt ctttattgaa agcaaatttt
    10081 acagagctta cttattgtga tggtgagaaa aataccaaag atatacctca cacaggagct
    10141 gctgctattt tagtatctaa agaatatgaa aatttagtac ctaaagatac taaagctttg
    10201 attactcaaa gtccacattt gagttttgct tttttaagca agctttttgc taaacctttg
    10261 ataagcacag ctaaagaaaa agtacaaaat atcgcaaaaa gcgcaagaat catgcctaat
    10321 gtttatatag gtgataatgt aaatatcggt gaaaatgtaa tcattatggc gggagcttat
    10381 ataggcgata atgtcagcat tggtgatgag agtattatcc atcctaatgt agtgatttat
    10441 aatgatacta aaatcggtaa aaaatgtcat ttgcttgcca attgtgtaat aggaagcgat
    10501 ggctttggtt atgcgcacaa taaaaacggc gaacattata aaatttatca taatggcaat
    10561 gtggttttag aagattttgt agaagtgggg gcttgtacaa ctatagatag agcagttttt
    10621 gatagtacta ttatcaaagc aggtactaag gtagacaatc tagttcaaat cggacataat
    10681 tgcaatatag gtcaaaattg tatcattgtg gcacaaactg gaatttcagg ttcaagtgag
    10741 ttaggacgca atgttattat gggtggtcaa agtgcaacga gtggacattt aaaaataggc
    10801 gattttagta ctatagctgc aagaggcggt gtgagtaaaa atttagaagg cgggcgtgtt
    10861 tatggaggtt ttcctatcat gcttcaaaaa gattggctaa aacttcaagc taaaatagca
    10921 ataaatttta aagaaaaatc acaagattaa catcgcatcg ccataagagt aaaagcgata
    10981 tttttctttt atggcgagtt cataaagttt taaacactgt tctctaccga taaaagctga
    11041 aactagcatg ataagagtag attttggtaa atgaaaattg gttaaaagat gattttgtct
    11101 tataggtgga ttttgcgggt gtaaaaaaag atcacaaaaa ccattttttg ttttagttct
    11161 tgcataatat tctatggttc ttgttaccgt tgttcctacg cctaaaatag cttgtttaga
    11221 atctataatt tcacatgctt gctgcggaat attaaaaaat tcgctatgca ttttatgctc
    11281 ttgtatattt tcgcattcca cgcttttaaa ggttccagct cctacatgta aggttaaatg
    11341 ataaatttcg tgtttttttc ttaaattttc aagcatagtc tcactaaaat gtaaacttgc
    11401 agtcggagca gccactgcac ctaaattttt tgcaaagata ctttgataat ctttcaaatc
    11461 acttttttca tcctcccttt taatataagg aggcaagggt atatgtccta tcttgtcaag
    11521 caggttgtaa agatttgagg tgtctaaggt tttatcattt tgaaaaaatt gaacttttcg
    11581 aagaccatca tttaaaagtt ctacaacgcg tacttttaaa tcatctttaa aatataagat
    11641 ttcatctttt ttaacacgcc ctttaatttg agctagaaaa agcggatcgt gagaatttaa
    11701 aaaaggttga tgcaagaaaa gctctatttt tcctccgctt gctttattgc cataaattct
    11761 tgctttaata actttggtat cattgaaaaa aatcgcgcag ttgggtaaaa agtcttgtaa
    11821 atttttaaaa gtagtatgaa aaatttcttt gtttttgcga tcaaaaacca aaagcctagc
    11881 atcttctttt ggatttgtag gatagttggc tatgagttca ttagctagag tgtaatcata
    11941 gcttgaaaga agtaagtctt tattcatcac tttctttatc ttttggagca ggatttacct
    12001 tttgaacaat taaaatagaa agtccataaa gtccgcaaag tggtcctgcc attaaaaatt
    12061 gagataaaac atcaggtgga gtcataaagg ctgaaaaaac aaaaataact aaaacagcta
    12121 tgcgaaaatg gcgttttaaa aaactatcat ctataagtcc gattttagca aagaaaaagg
    12181 caattacagg catttcaaaa gctaagccaa aagccacaac aactttcgta aaaaaatcta
    12241 cataagttcc tatggtaatc acaggattaa aatcttcatt taaaccaaaa ttaattaaaa
    12301 atttaaaagc caaaggcact acaacaaaat agcaaaaaca agcccccaag gcaaacataa
    12361 tgcttgcaaa gctaacaaaa ggcaccacaa ggcgtttttc attatcataa agtcctggag
    12421 ctacaaattt ccaaaattgc caaaaaatta caggtagaga aaagataaag gctgcaaaaa
    12481 aactaacctt cattgcggta aataaggctt cttgtacttc aattacattc acatgtttgg
    12541 ctacttcggg taaaacagct ataagtggag cttttaaaat atctaagata tagcttcgta
    12601 gagcaaaaca tacaataaac ataactacaa tgcaagcaac gcttataaaa aggcgttttc
    12661 taagttctat taaatgaggt cttaattctt caaacattta tttttccgtt ttatcttgtg
    12721 tttctaattt gctaagattt ggtttttcct ctgtatttaa attttgtccg ctaaggttat
    12781 tttttacttt atcatctctg ctatcaaagg ttaaatctac ctttgtttta tctaaaatat
    12841 ctcttttaag gtcatcaaat tcttcaaaac tgagtttttt gcgtatattt tcattagtgc
    12901 ttgaaaattc atctttgtat ttcttagctt cttcttttaa gtcattgatg cgtatttctt
    12961 tttctatgct tgattttgca tcatctatgt tgcgttttac agcctttaga atttttgcta
    13021 tttgcactat agcttctgga agtttatcag gccctaagac taaaatcgct acaactaaaa
    13081 taactataat ttcaccaaaa ctcattaatc gttactcttt gatttgatat tttaaataaa
    13141 tattttactt aaaaaactta aatttaagat gagagatata aagcaagttc gtcgctaatg
    13201 agaaaattag gattaaaata tcttttattt ttgtaaaaga gttttttttc ttttaataat
    13261 atatttattt tgtctttttg ccattgattg agttttgttt catcaatccc tactatactt
    13321 ctaagtccta aaaataggtg ttctaaattc aagtctttag agcttagttg ctctatagat
    13381 ctaaaagtgg gattttctat gtaatttttt aaattttttg ctgtataaaa acgcttattt
    13441 tcataaaatc ctaccgcact taatccacaa gctaggtagt tttttccttg ccaataagca
    13501 agattatgtt tgcaaatttg ggctttggtt tttgaaaaat tgctgatttc atattgaaaa
    13561 aagtcaagct ctagaagttg tttgataaaa aatttcatta aattaggagc attttttttg
    13621 aaatgttctt ttttggcaaa ggctgtgttt gattctatgg ttaaattata agcactaagg
    13681 tgtgtgatta aagccttgat ttgttttaag tgtaagagtt caaattcaag cattttttta
    13741 ttgtctaatt ttgtatcata aataagatct aaattgatat ttttaaaacc tactttattt
    13801 gcattttcta atgctttgat aatcatttct tgattgtgaa ttcttccaag aaagtgaagt
    13861 tttttaggat gaaaactttg agctccaaaa gaaatgcgat taactcctag atttttcata
    13921 tttttaagcc aatttaatgt tgctgagttg ggattagctt cgcatgaaat ttctacattt
    13981 ttatctagta agggatataa aattttaaaa atatcttcat aattatacgc atcgacacaa
    14041 cttggtgttc ctccgcctat gaataaggtt ttaatttgat ttgattgaat gttaaattgt
    14101 tttaattgaa aaacaatatc ttcttttaaa gcctgaaaat aggctttttc ataatcattt
    14161 tttttcaaac ttgtaaaagc gcaataatta catttgcttt cacaaaatgg aatatggata
    14221 taaaaatgca taaaaaccct aaaatatttt attaaatttt taatgtattt taataaaaat
    14281 ttgatttgat ttaggttaaa attatatcct tgagatttaa ggaaaaatat tgtggaaaac
    14341 gagaaaaatt atagaccaaa tgttgcagct attgttttat caagttctta tcctttcgag
    14401 tgtaagattt ttatagctaa aagaagtgat atggataata tttggcaatt tccacaagga
    14461 ggcattgata aaggtgaaag tgtcaaaaac gctttattta gagaattaaa agaagaaata
    14521 ggcactgatg aggttgaaat cattgctgag tatccagaat ggttgagtta tgattttccg
    14581 agtaaaattg ttaaaaaaat gtatccttat gatgggcaga ttcaaaaata ttttttagtg
    14641 cgtttaaagc acggtgctac aatcaatatc aataccaagc atcctgaatt tgatgattat
    14701 caatttgtga gtgttaaaca aatttttgaa atgattaatc atttcaaaaa aaatatttat
    14761 gttaaagtga tcaaatattt tgaagagaaa ggttatatct aaaatgctta tagttcaaaa
    14821 atatggtgga acaagcgttg gaacacttga gcgtatcgaa gcagtagcca atagggttat
    14881 ccaaagtgtg caacagggtg atcaacttgt tgttgtagta tctgcaatga gtggggtgac
    14941 aaatactctt atcgagcaag ctgaatattt tagtaaaact cctaatggta aagatatgga
    15001 tatgctttta agcagtggag agcgtgtaag ctgtgcttta ctttctattg ctttaaatga
    15061 aaagggttat cctgctatat cattttctgg gagaaaagcg ggaattatta cagatagtgt
    15121 ttttacaaag gcaagaattc atcatattga tacaaaagcg ataaaatcag aacttcaaaa
    15181 tggtaaaata gtcgttatag caggttttca aggtgtagat gaggaaggta atgtaactac
    15241 cttagggcgt ggtggaagcg acttaagtgc tgtggcggta gcaggtgcct taaatgcgga
    15301 tttgtgtgaa atttataccg atgttgatgg ggtttataca acagatccaa gaattgaacc
    15361 aaaggcaaag aaattggata aaatttctta tgaagaaatg cttgaacttg caagtttggg
    15421 tgcaaaagtt ttgcaaaatc gctctgtaga gcttgcaaaa aaattaaatg ttaacttagt
    15481 aactagaagt agttttaaca ataacgaagg aacaatgata acaaaggaag atggaatgga
    15541 acaagcttta gtaagtggta ttgctttgga taaaaatcaa gcaagagtga ctttaagaaa
    15601 tgtagaagat aagcctggaa tcgcagctga aattttttct gttttggcaa atgaaaatat
    15661 taatgtagat atgattatac aaaatgttgg agttgatggc gctacaaatt tgggttttac
    15721 agttcctcaa aatgaacttg aattagccaa aaatgctatg caaaaaattt taagctcaaa
    15781 aacaactata gaaagtgata gtgctgtagt aaaagtttct atagtcggcg taggcatgaa
    15841 atcacattca ggagtggcaa gtaaagcttt taaagcttta gctgatgagg ggattaatat
    15901 cggtatgatt tctactagtg aaattaaaat ttcaatgata gttcatgaaa aatacggaga
    15961 acttgcagtt agagcactac atgagtgcta cggacttgat aaataaatga gtgatttttt
    16021 aagttttact cttgaaaata ttcgcaatgg cggagctttt atggcatggt tggagtcgcg
    16081 tcgtttagaa tgggctcctt tgatggctgc aagacttaaa tatcttttag agggacgcac
    16141 ttttgtctta atgtgcgatg aacaaagatc ttggtatgaa gagtattttt taaaaaatat
    16201 aaattcaaaa gccgctcgtc ctatgcttcc ttttgtgtcg ttaaattctt tatgcaagaa
    16261 gaaagtacaa agttcagaag atatagcttt acttaatgac ttgcttgaca tttcttttcc
    16321 taatggttat gtgtattttt atataggaag tgcttctgat aataaatctt taatcgctaa
    16381 atcaagagat gatagtttat tgtggctttt tgatgagcag ttacaagata gtttttattt
    16441 aaattctaaa gataaagact tggatatcaa gcttattagt ttatatcaac tttttgatgt
    16501 aagtttggat gcaatattat tttccaaggt gcaattagga taaatatttt gtttattagt
    16561 aagattatta tcagcgaaga ttttttaggt attaaagaag aaatgattaa taattttggt
    16621 attaaaaaat taagattttt tatgccacaa aatgaatttt tacttgatga tgcaagagcg
    16681 gttgaaaaag aaagctatat tgcagaaact gaagaaaaaa ttattgtttt aatggcggat
    16741 tcttatagga tagaagcaca aaatttttta cttaaacttc ttgaagagcc tccaaaaaat
    16801 attaaatttc ttattgtggt accttctaaa aatttacttt tacctaccat aaaatcgcgt
    16861 cttatttgcg aaaaaagaaa agttgaaaag gaagttaaaa aacttgattt agatcttaaa
    16921 agaatggatt taagaatgct ttttgatttt ttgcaaaaaa atgaaaattt ggataaaaat
    16981 gaacttatgg atcaaatcgc attacttgct aaagaatgtg tgaaatataa agattttaat
    17041 gctgaagaat tagagttttt ttatgaaggc tatgagcttg caaaattaaa ttctaaaagc
    17101 ggggtgcttt tagctactct tttgttaaat tactatacaa agaaataaaa tgaaattttt
    17161 taaaatcaat ccaaataccg attttaattt gctttgttct ttcataaatc cccataaaat
    17221 gggacaaaag attatgagtg aaaaaacaaa aattcatttt atttttatca aagatatttc
    17281 cactcctgca gcaaatattt taaaacaaga tgctttaaga ataggagctg aacttattac
    17341 tcataaagaa gtaattactg caaaaatcac tcattcaaat gcacttttaa tggcaagtaa
    17401 agagcaaatt caaaagctta ttgctaaaga aaaacttcaa gattttggac ttaaaaattt
    17461 ggctcttttt ttacaaaaag attttttaaa accaaaaaaa gctgagctta tggcagtgat
    17521 taatgtcaat gaagacagtt ttaatgcaaa aagtcgtgtg agtgaagaag actttgaaaa
    17581 aaggcttaat gactttcttg ctttaaagcc tgcgtatatc gatataggtg cggttagttc
    17641 aagacctggg agtgagtatt gtggcaagga agaggaattt aaaagactga aaaaagtact
    17701 tgacttaatt tatgagaaaa attattacga acaagcaatt tttagtttag atagttttga
    17761 tgaatattgt ctagaatatg ctttaaataa gggttttaaa ctcattaatg atattacaag
    17821 tttaagaaat cttaatctag ctaaacttgc aagtaaatat gaggcaaaat attgcttaat
    17881 gcacatgcaa aacaatccaa ataacatgca agataatcct tcttatgaag atttgcttga
    17941 tgagatgact ttgtttttta aagaaaaact tgaactttta gaaagttttg gagtaaaaga
    18001 aagtatttta gatgtaggta ttggttttgg aaagagtgcg gggcataata tgattttaat
    18061 caaacactta gagcattttt tgcaatttaa taagccttta cttataggtg cgagtcgcaa
    18121 aagtgtgatt aatgcgtatt ttcaaagcga gattaaagat cgtttagcag gaactttgta
    18181 tttgcattta aaagcttttg aaaatggtgc tagtattata agagtgcatg atttatatga
    18241 acataaacaa ctttttgctt tagcgcaggc aatggataat ataggagttt agatgaaaaa
    18301 agaagagtat ttagaaaaag ttgctttagc aaatttgtgg atgagggcat attatgaaaa
    18361 agatgaaccc ttggctagcg atgaagaata cgatgcttta atcagagaat taagtgtttt
    18421 tgaagaacaa aacaaagatg aaatttcaaa agactctcca acgcaaaaaa tagctcctat
    18481 catacaaagc gagtttaaaa aaatagctca tttaaggcgt atgtggtcga tggaagatgt
    18541 gtttgatgag agtgagctta gggcttgggc aaaacgcgca aaatgtgaaa aaaacttttt
    18601 tatagagcct aaatttgatg gagcgagttt aaatttactt tatgaaaatg gtaaattagt
    18661 aagcggtgcc actaggggcg atggcgaagt gggtgaggat ataacgctta atgtttttga
    18721 gatagaaaat atacctaaaa atatagccta taaagaaagg atagaaattc gtggagaagt
    18781 ggtgatttta aaagatgatt ttgagaaaat caacgaaaaa agagcccttt taaatcaaag
    18841 tttatttgct aatccacgca atgctgcaag cgggagttta aggcagcttg atacaagcat
    18901 cactaaagaa agaaatttga aattttatcc ttggggagta ggggaaaata ccttaaattt
    18961 caccaaacac agcgaggtga tgcaatttat cagagagctt ggttttttaa aagatgattt
    19021 tgtaagactt tgcgctaatt tagacgaagt tttaaaagct tatgatgagc ttttagctct
    19081 aagagaaaaa aaacctatga tgatggatgg aatggtggta agagttgatg atcttgcact
    19141 ttgtgaagaa ttaggctata cggtaaaatt tccaaaattt atggcagctt ttaaatttcc
    19201 tgcacttgaa aaaaccacgc gtttaatagg ggtaaattta caagtaggaa gaagtggagt
    19261 gatcactcct gtggcggttt tagaacctgt aaatttagat ggggttgtag taaaatcagc
    19321 cacccttcat aattttgatg aaattgcaag acttgatgtt aaaatcaatg attttgtaag
    19381 cgtgataaga agtggtgatg ttattcctaa gatcactaag gtttttaaag agcgtagaga
    19441 aggtttagag atggaaattt cacgccctaa actttgtcct acttgccaaa gtgagctttt
    19501 ggatgaagga actttaataa aatgtcaaaa tatagattgt gaagatagac ttgtaaattc
    19561 tatcattcat tttgtttcta aaaaatgtct taatatcgac ggacttggag aaaatatagt
    19621 agaactttta tacaagcaca aaaaaatcac tacgcttgag agcatttttc atttaaaatt
    19681 tagtgatttt gaaggtttgg aaggctttaa agaaaagaaa atcaacaatc ttttaaatgc
    19741 catagagcaa gccagagaat gtgagctttt tcgttttatc acggctttag ggatagagca
    19801 tattggcgag gttgcggcta aaaaattaag tttaagtttt ggtaaagagt ggcacaagca
    19861 aagctttgaa gcttatgcca atttagaagg ttttggagag caaatggctt taagtctttg
    19921 cgaatttacg cgtgttaatc atacaagaat tgatgaattt tacaagcttt taaatttgaa
    19981 aatagaaaaa cttgaaatca aaagtgatag tatgattttt ggtaaaactt ttgtgattac
    20041 aggtactctt tcacgtccaa gagatgagtt taaggctttg atagaaaagc ttgggggtaa
    20101 ggtaagcggc tctgtttcta aaaagactga ctatgtgctt tttggagaag aggcaggttc
    20161 taaacttagc aaggctaaag agcttgaagt aaaatgtata aatgaaagtg cttttaatga
    20221 gcttgttaaa gaatagttct tatattttaa cgcttttaag cctttttggc tttttgctaa
    20281 cttggcaaag gagtgctttt tctttatttt ttttaattcc tattttttta acactttttt
    20341 gggaattctt tttattttta aagcttagaa aaaatattat aaaagaagct actttgatta
    20401 agggaagttt gttttatcgt attagtatgg gggattttta tctttatatt tttagctttt
    20461 ttttggcgat ttttggactt gtttctttat ttttaaattt tttaaatctt gaaaaaattg
    20521 attttgtttt tatatttata attttacctt tattgatgat atttttaaaa aaagaattgc
    20581 atttgcaatt tatagataat gcttataatg attttagaat agttgttatc gctagttttt
    20641 ttactgcttt attttatgca ttttatgggc ttttttttac ttacaatgaa cttttaaatt
    20701 tagaactttt ttctaggaaa atcattgcct ataagagtgc ttcttttgtt tattttgatt
    20761 ttttatctga atttttacat tttgtttcaa atttaaaatt ttttattttt tcttattttg
    20821 gatatttggg gtttagggct ttaaatttta tttttgattt ttttaatttt tttatgtttt
    20881 gttctctttt ggcttttgtt tttaattttg ttttgaaaat aaagataaaa ataattgttt
    20941 tatttttatg ttttatcatg gttttaggaa attattt
//
LOCUS       DAQSLY010000017        20882 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.017, whole genome shotgun sequence.
ACCESSION   DAQSLY010000017 DAQSLY010000000
VERSION     DAQSLY010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20882
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.017"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..325)
                     /locus_tag="R2H98_000505"
     CDS             complement(<1..325)
                     /locus_tag="R2H98_000505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023417.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKIDLKFNNYFLLNKIIKGNFTNPFDFLDKVLK
                     NNKLGT"
     gene            complement(460..807)
                     /locus_tag="R2H98_000506"
     CDS             complement(460..807)
                     /locus_tag="R2H98_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023418.1"
                     /translation="MKKSILFTSALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(906..1479)
                     /locus_tag="R2H98_000507"
                     /pseudo
     CDS             complement(906..1479)
                     /locus_tag="R2H98_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1481..1804)
                     /locus_tag="R2H98_000508"
     CDS             complement(1481..1804)
                     /locus_tag="R2H98_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEE9023419.1"
                     /translation="MACGSSNPEDLAKNFTKDLYSGNTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKNIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRK"
     gene            2048..3394
                     /locus_tag="R2H98_000509"
     CDS             2048..3394
                     /locus_tag="R2H98_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEE9023420.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANIYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLSIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGIKLNIEKSEHHNEKWFWLNLLVTIGVIGLLISGIIPSYICFM
                     IGLVIILPLNYPNLKIAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGTYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIRDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            3578..5575
                     /locus_tag="R2H98_000510"
     CDS             3578..5575
                     /locus_tag="R2H98_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEE9023421.1"
                     /translation="MMYKKQNLPELTLRGLVLGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLMGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            5649..6452
                     /locus_tag="R2H98_000511"
     CDS             5649..6452
                     /locus_tag="R2H98_000511"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEE9023422.1"
                     /translation="MESLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            6583..8391
                     /locus_tag="R2H98_000512"
     CDS             6583..8391
                     /locus_tag="R2H98_000512"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEE9023423.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ILKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            8388..8906
                     /locus_tag="R2H98_000513"
     CDS             8388..8906
                     /locus_tag="R2H98_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEE9023424.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            8945..10036
                     /locus_tag="R2H98_000514"
     CDS             8945..10036
                     /locus_tag="R2H98_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEE9023425.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            10078..13528
                     /locus_tag="R2H98_000515"
                     /pseudo
     CDS             10078..13528
                     /locus_tag="R2H98_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            13609..14637
                     /locus_tag="R2H98_000516"
     CDS             13609..14637
                     /locus_tag="R2H98_000516"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEE9023426.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQDLLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSIDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            14647..15093
                     /locus_tag="R2H98_000517"
     CDS             14647..15093
                     /locus_tag="R2H98_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEE9023427.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRIGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            15097..15942
                     /gene="argB"
                     /locus_tag="R2H98_000518"
     CDS             15097..15942
                     /gene="argB"
                     /locus_tag="R2H98_000518"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEE9023428.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCERLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDEDFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFSDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            15946..17133
                     /locus_tag="R2H98_000519"
     CDS             15946..17133
                     /locus_tag="R2H98_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEE9023429.1"
                     /translation="MKMDYKEQSHIVPAYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(17153..17782)
                     /locus_tag="R2H98_000520"
     CDS             complement(17153..17782)
                     /locus_tag="R2H98_000520"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEE9023430.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TMERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            17871..18419
                     /locus_tag="R2H98_000521"
     CDS             17871..18419
                     /locus_tag="R2H98_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEE9023431.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDKKGKLKDTGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDSALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNNEEI
                     NFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(18388..19761)
                     /locus_tag="R2H98_000522"
     CDS             complement(18388..19761)
                     /locus_tag="R2H98_000522"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEE9023432.1"
                     /translation="MMTSKTSLTLLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFDIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTIQDYTKEQISKLDENFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(19748..20770)
                     /locus_tag="R2H98_000523"
     CDS             complement(19748..20770)
                     /locus_tag="R2H98_000523"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEE9023433.1"
                     /translation="MQRKRIYNPSSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(20773..>20882)
                     /locus_tag="R2H98_000524"
     CDS             complement(20773..>20882)
                     /locus_tag="R2H98_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEE9023434.1"
                     /translation="GLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
BASE COUNT         7137 a         2608 c         3793 g         7344 t
ORIGIN      
        1 aagttcctaa tttattgttt tttaacactt tatctaaaaa atcaaaagga tttgtaaaat
       61 ttccttttat aattttattt aacaaaaaat aattattaaa tttaaggtcg attttggttg
      121 aaagctgtgt atgagagtga tttaaagtaa aacttccctt agaagttaaa aaaccttttt
      181 tgaagtaaat atctgtaatt gtataatcag gattgctgtt tttaataaat ttattaaata
      241 aaagttcgtt agtgtatcct atataaaata tatgaataat aaaacctaat ataaaacaaa
      301 aaacaataaa aatccatttt ttcattattt gccttagatg aaaatataag tgttatttta
      361 taaattgctt gttaaaaaag agtttaaatt tttatttaag agtaatgaag tagtttgccg
      421 aagaatgatt tttataaatc ccttgttaag ggatttatat taataagctt ttttataaca
      481 ttgaatttca atttttctag ctactggaat agcctgagta tttggtgtag caggtattcc
      541 ataagaaatt ttactttcta aaaaatttcc aacctgtaaa tctttaaaag ttccatcttt
      601 atctgttcca aaaataccac aatcatccat ttctatttcg gtatttggta gaacttttat
      661 agccatttgt ccgccataaa tagagtcaat aagcaaggtt ttattgttat cataaatttg
      721 cgcaatagta ccttcaagtt ttagactatc tgcaaaaagc attgagctag ctaaaagtgc
      781 tgatgtgaat aaaatacttt ttttcataat tatttctcct taatgtaaag tgatgacatt
      841 ataaaatttt taagtgaagt gaatgtgaaa ttaaaaattt ttgactttca taaaattaat
      901 acgctttaat tattttcaaa aaaagcttgt ggaaaaagat ataaaccttc attaaaagga
      961 gctttgatta gagtatattg aagatgaaat ggggtaatgg agttaataga ttgttctaaa
     1021 aaaagtagtg cagtaaaaag catctttatc tgtacttatg ataaattttc tgcctaaatg
     1081 ttccaaagct ttagcaacta ttttttgttt ggttttttca tcaaatttta atcttttaat
     1141 agcaatttta tgactcagtt ttaaaaaatc atccatagag cttaagataa cttggtcttt
     1201 agcatttttg tcatcatctg ttgtagcatg tatgagtata gttggagaag ttttaactac
     1261 catagcgata tgagaataag ggctttgact taaattttct attaaaaaac tttcacttcc
     1321 tattcctgca cgaaagacaa gatcacctat ttcaagaaaa ggtagatagg gttttttgat
     1381 gatttgattt gaaggattgg aatttataaa gaaacccaaa attccaatca ataaaaataa
     1441 aattaagaaa aaatataaaa ttttatttaa gtaaaacaag ctattttcta tcttttttag
     1501 caagaaaaac attgctgctt tgattattat cattgttaaa taacactaaa actctgattt
     1561 tagcagaatc tttattgatt gttttttctt caatttgaat atttttaaca ccacccattc
     1621 tttttgcttt ggctgcattt tcagcaacaa cttgagtgat tttatcacta acaaatgttt
     1681 tttcttcatc gcttttagct tcgctaagat caatgtaact cataacagat ttagtattac
     1741 cactgtaaag atcttttgta aaatttttag ctaaatcttc aggatttgaa gaaccgcaag
     1801 ccactaaaaa aaggcaacta aagccaagaa agaaagttta aaaaatttca tttttttctt
     1861 ttgatagtat aaattaaaat attcataatt atagcaaaat aattcaaaat tattttttta
     1921 ttcttgttta taatggttac attagaaaat atattttttt taaaaagcta taaatttaaa
     1981 cacatataag ttggagttaa aatatcctat tttattatcg aataaaaatg atacaaaagg
     2041 ataggatatg gaaatttttt tagctttatt gggttttttc tcgttaggat tgatagtttg
     2101 gcttttgcta aaagattata ctactccagc actagctttt ataagtgtaa gtattagtgt
     2161 agcttgtatt ttacttattc ttgaacggct tggttttggc gtgggtgtag ctttaggggt
     2221 taaaggaggt gtttttgata ttaaaacatt ggttgttttt attaaagatg gagtcaaaag
     2281 cgtaacggat acggcagctt tgtttgtttt ttctatactc ttttttagtg ttttaaatgc
     2341 aagtggtttt tttactaaaa ttttaaatgc atttttatca aaaatgaaag ctaatatata
     2401 tcaagtttgc attcttactg tttttattgc tgctgctgta catttagatg gttcgggtgc
     2461 ttctactttt cttattgtaa tacctgcatt attacctatt tatgagcgtt taagtataag
     2521 aaagacttca atgttattga ttattacttc agctatgggg gttatgaatg ttattccttg
     2581 gggtggtcct actttaagag cggctactaa tataggaatg gatgcaaatt tgctttggca
     2641 ccatattata cctattcaga ttgtaggttt agtattatcc cttcttttgg caatttggat
     2701 tgctaagata gaaataaaaa gaggcgcagg cgcaggtaac ttgtcgggaa taaaattaaa
     2761 tatagaaaaa agcgagcacc ataatgaaaa atggttttgg ttaaatttac ttgtaactat
     2821 tggggttatt gggcttttaa ttagtggtat tattcctagt tatatttgct ttatgatagg
     2881 gcttgtaata attttaccgc ttaattatcc taatttaaaa atagctaaaa aagttttaga
     2941 tcgtgcaagt gctggtgcaa tgcttatgta tattacttta attggtgctg ggatattaat
     3001 aggcgtattt gataaaagtg gtattatgga gaaaatgggt gttttgattt taaatttcgt
     3061 tccagattat ttaggtactt atattccttt aatggtaggg atattggctg ttccaatggc
     3121 aattattttt tgtacggatt cttattttta tggagtgatg cctatagttt tgagtgtaac
     3181 taaggctttt ggtgctgaac ctttgactat agctattatc atggtgatag caagaaattg
     3241 tgcgacattt atttctcctg ttgtgcctgc aactttgcta ggttgtggtt tagcagaggt
     3301 taatattaga gatcatatca aaagaagctt tttttatata tggggtataa gtattatttg
     3361 cttgattttt gctgaggtag ctgggataat ataattaaaa taaaagaact tttgattttt
     3421 caatgattag ctcattgttt tatgatattt ttgagtcaaa aatttataaa aatataagcg
     3481 tttttttgta ttattttatt ttgctttaga gaaaaattat aaatttaaac ttataagaat
     3541 attttttaag ttgaaagtaa aattttaaaa cggagaaatg atgtacaaaa aacaaaattt
     3601 accagaactt accttaaggg gtttggtttt gggaagtatt ttaactatta tttttacagc
     3661 ttcaaatgta tatttagggt taaaagtggg acttactttt tcatcatcaa ttccagctgt
     3721 ggtcatctcc atggcggttt tgagtctttt taagacttca aatattttag aaaataatat
     3781 ggttcaaact caagcttcag cagcaggaac tttatcatca gttatttttg ttatcccagg
     3841 gctttttatg tgtgggtatt ggagtgaatt tccactttgg caaactttta tgatatgtct
     3901 ttgtggtggc ggacttggag tgctttttac tataccatta agaaggacta tggtggttga
     3961 aagcaagctt gcttatcctg aaggtagagc tgcagctgaa attttaaaag tagccaataa
     4021 agatcagagt agtaaaaaag gaaaacaagg cattaaagaa atagcattag gctcttttat
     4081 agctgctatt tttagtttgt taagcaatgg ttttaaactc gctgcaagtg agagtaattt
     4141 tgcttttatt tggaataaaa tggcttttgg tttttctatg ggatattctt tggcactttt
     4201 aggggcaggt tatttagttg gtttagcagg tgctatagct ctttttgtag gtatgttttt
     4261 agcttggggt atttttactc cctatctttc aaattttgaa ttcgatagtg caaaaaatgc
     4321 cgtagattta gcttctagtg tatggagttc taaagtaagg cttatgggaa caggagctat
     4381 tgctatagca gcgctttgga ctttaataga acttttaaaa cccgttattg aaggtattaa
     4441 agaaattgtt aaaaatgtta aaattactaa tcaagaaaaa aatgaaagaa caaatataga
     4501 cctttcttta aaaagtattt ttatactttt tgttttaatg gttgtgggtt tatttattac
     4561 tttttatagt tttgttgaag atgctaactt aagtatttat tatcaaatgc tattttcatt
     4621 tgttggaact ttagtttctg ttttaatagg tttttttgtt gcagcagctt gcggatatat
     4681 ggcaggactt gtaggatctt cttctagtcc tatttctgga atcggactta ttggtgttat
     4741 tatttcttct attgtttttt tggttttagg tgtggaactt tttcaagatc ctatgctttc
     4801 taaatttgca gtagcattag ctatttttac tactagtgtt attttagcta cagctgctat
     4861 ttcgaatgat aatttacaag atttaaagac aggacattta gtcggagcta ctccttggaa
     4921 acaacaagtt gctttacttg taggctgtgt ttttggtgct ttggctatag ttcctgtttt
     4981 aaatttgctt tatcaagcct atggttttgt cggagcaatg ccaagagaag gtatggatgc
     5041 ttcatcagct ttagcagcac cgcaagcaaa tttaatgagc actatcgccc aaggaatttt
     5101 tcatcacaat atagagtggg gttatatggc ttttggtgta tttgtaggaa ttttaatgat
     5161 tattatagat aaaattttaa aaggaacaca gaaaatgtct ttgccgcctt tagccgttgg
     5221 aataggtatt taccttcccc ctgctgtaaa tataccttta gttataggtg gaattttaaa
     5281 atatattgta atgcaacact tgactaaaaa atatgcaaaa aattctcata aagaagaaaa
     5341 acttgcaagt tgtgagcaaa gaggcacgct ttttgcttca ggacttatag tgggtgaaag
     5401 tatttttggg gtaattatcg caggaattac tgtattttca gtaagtatgg gtggtagtga
     5461 aaatccttta gctttaaatt tagcaaattt tcatgatagc gagcttttcg cacttatctt
     5521 ttttgtggga gttgtattat atttcattaa gcgtattgtt aaaaaagatg cttaattttt
     5581 ggggttaaaa ccccatttaa tccattctga tataattttt cttttgcaat tatcattcaa
     5641 ggattaaaat ggaaagttta tatgctttaa tacttggaat tatagaaggt ctgactgagt
     5701 ttttacctat ttcttcaaca ggacatatga ttttaggtac gactatttta ggtatcgata
     5761 tagatgagtt ttggaaaagc tttttgatta tcatccagct tggttctatt ttggcggtca
     5821 tttttgtatt ttggcgtaaa ttgtttcaag ggcttgatat ttggttaaaa cttgcagttg
     5881 gattttttcc taccggagtt atagggcttt ttgtggcaaa atacttaaat gctttattta
     5941 atggttgggt tgtggttgga atgctcattt ttggcggtgt tgtgtttatt cttatagaac
     6001 ttgcacataa aaataaacaa tatcgtatca attctttaga agaaataagt tttaaacaag
     6061 ctttttgcat aggtattttt caatctttag ccatgattcc tggtacttca agaagtggag
     6121 caagtattat tggtggactt ttgctaggat ttaatagaaa agttgcggct gagtttagtt
     6181 ttttgcttgc cattccaacg atgattatcg ctacagctta tagcatttat aaagagcctg
     6241 agcttcttag caatgcaaat tctttaattc ctttaggcat aggttttatc actgctttta
     6301 ttgttgcagt tttagttata aaatttttct taaaatttat ttctaaattc gactttatcc
     6361 cttttggaat ttatcgtatt attttaggat ttgttttctt ttatttgtat tatagtggga
     6421 ttttaaatgc tggaagtgaa tttaagctat aaataaatat taaatttatt ctaagatttt
     6481 tttaaaaata agctgaattt caaaaataat taagtcttag aaagttaaaa ttagaacttt
     6541 ataaacactc acagggtaag tgagcgacaa agggttaaaa atatggaaaa agaagttatt
     6601 gcgtatttgg acaatgagac aataattgac tctcaaagtg tgaaaaatac aaatttaaaa
     6661 gaaatttatt ttgataattc taaagaaagt ttagaagtaa tccgtcattc ttgtgcgcat
     6721 ttaatggcac aggcgattaa gagtttgtat cctgaggcta aatttttcgt tggtcctgtt
     6781 atagaagatg gattttatta tgattttcgt gtggaaagta agattggcga agaagattta
     6841 gtaaaaattg aaaaaaagat gaaagaactt gctgaagcaa agattgaaat tttaaaatat
     6901 gaaatcacaa aaagcgaagc tttggctaaa tttcaaaatg atgatttaaa acaagaagtt
     6961 ttattgcgta ttcctgatgg agctgtaagt atttataaac aaggtgaatt tgaagatttg
     7021 tgtcgtggtc ctcatgtgcc aaatacgaaa tttttacgct tttttaaact cactcgtgtt
     7081 gcaggagcgt atttgggtgg cgatgaaaaa agagaaatgc ttactcgaat ttatggtacc
     7141 gcttttgcag ataaggaaag tttaaaagag tatttaacca ttattgaaga agctaaaaaa
     7201 cgcgatcata gaaagcttgg aacagagctt aagcttttta cttttgatga tgagatcgga
     7261 ggaggtcttc ctatttggtt gagtaacggt gcaagactta gatctaaact tgaacatatg
     7321 ctttataaga tccatcgttt acgtggttat gagcctgtgc gtgggcctga acttttaaaa
     7381 gcagatgcat ggaaaatcag tgggcattat gcaaactata aagaaaatat gtattttaca
     7441 caaattgatg aacaagaata tggcattaag cctatgaact gtgtgggaca tattaaaatt
     7501 tatcaaagtg atgtaagaag ttatcgtgat ttgcctttga aattttttga atacggcgtg
     7561 gtacatcgtc atgaaaaaag tggcgttttg catggacttt ttagagtgag agaattcact
     7621 caagatgatg cacatatttt ttgtatgcca agtcagatta aagagcaggt tttagaaatt
     7681 ttagcttttg tggataattt gatgaaatta tttgatttta gctatgaaat ggaaatttca
     7741 actaaacctg aaaaagccat aggtgatgat gaaatttggg aaatagcgac taaggcttta
     7801 aaagaagctt tagatgaaca aggtttaaaa tacggcatcg atgaaggtgg cggggctttt
     7861 tatgggccaa agattgatat taaaatcacc gatgctttaa aaagaaagtg gcaatgtgga
     7921 accatacaag tagattttaa cctgccaagt cgttttaaac ttgaatacac tgatagtgat
     7981 aatgaaaaaa aacaacctgt aatgttgcat cgtgcgattt taggttcttt tgaaagattt
     8041 ataggaattt taaccgagca ttgtgcgggt gagtttccgt tttttatcgc accaactgcg
     8101 gtgggtatag tgccaatagg cgaagcacat attgcttacg caaaagaaat tcaaaaagaa
     8161 ttattagagc ttaatatcga tagcgaggtg tatgaaaaaa atgagagctt aagtaaaaaa
     8221 attcgtatcg ctgaaaagca aaaattacct atgattttag ttttaggcga tgatgaggtg
     8281 gcaaagcgta gcgttgcttt aagagataga agagctaaag aacaaaaaaa tcttagcttg
     8341 gacgaattta ttaaattagt taaggagaaa atgagtgagg tacacttttg agtaaagaaa
     8401 aagaagtatt gctcaatgaa gaaataagag cggatgaaat cagatgtgtt ggcgatgatg
     8461 gcaaagttta tggtattatc agtagtgatg aagctttaga aattgcaaat cgtttaggac
     8521 ttgatcttgt aatgatagct gcagatgcta agccacctgt ttgcaagatc atggactatg
     8581 gtaaattccg ttatcaacaa gagaaaaaac aaaaagaagc aaagaaaaaa caaaaagtga
     8641 ttgatataaa agaaatcaaa ctttctgtaa aaattgctca aaatgatatt aattacaagg
     8701 taaaacatgc tttagaattt ttagaacaag gtaagcatgt gagatttcgt gtgttcttaa
     8761 aaggacgtga aatggcaact cctgaagcag gtgtagcttt gcttgaaaaa atttggacta
     8821 tgatagaaaa tgaagctaat cgtgacaaag agccaaattt tgaaggtcgt tatgtaaata
     8881 tgcttgtaac tccaaaaaaa gcttaatcca cttttgtgga taaggctttt aaaggtttta
     8941 aattttgaaa gaaaatcctt cttttttaaa agagcaaatt ataacttatc ttggaaataa
     9001 aagagcactt ttaagttttt taaataaggg ctttaaggta gctaaaaaag aacttggtaa
     9061 agataaattt agtttttgtg atatatttag tggctcaggt gttgtaagtc gttttgcaaa
     9121 agcacactca aattatattt tagccaatga tttagaagat tattcaaaac tcatcaatga
     9181 gtgttatctt gctaataaag acaaagattt acttcaaaat ataaaaaagt attataaaaa
     9241 tttaatccaa aatttagatt ttcaaaaagg ttttatcagt gagctttatg ctccaaaaga
     9301 tgatgatgat attaaaaaaa atgaaagggt tttttatact tttaaaaatg ctttatatct
     9361 tgatactata aggcaaaaaa tcgaaaatga aattccaaaa gaattgaggc atttctttat
     9421 agctcctttg atttatgaag ccagtgttca ttcaaatact agcggagttt ttaaaggttt
     9481 ttataagggt aaggatggca tcggaaaatt tggtggcgaa ggacaaaatg cacttaaacg
     9541 cattaaagga gaaatagagc ttaaaatgcc tattttttca aatttttctt gtgaatttga
     9601 agtgatgcaa aaggatgcaa acatgcttgc aaaagaactt gatttttttg atgtagtgta
     9661 tcttgacccc ccttataatc agcaccctta tagttctaat tattttatgc taaatttaat
     9721 tgcaaattat aaaaaacctg aagaaatttc taaaatcagt ggcattccaa aggattggaa
     9781 ccgcagtact tttaataagt caaaatttgc ccaagatgct ttatttgaac ttattaatga
     9841 tttaaaagca agagtgattt tactttctta taattgtgaa ggttttgtaa aaaaagaaat
     9901 ttttttaaag cgcttaagca ctcttggaaa atgccggatt ttagagcaaa aatataatac
     9961 ttttagagct tctcgcaatc ttaaaaatcg caacatccat cttcatgagc aactttatat
    10021 tttagttaaa aattagtttt tcgtgctaaa attgcactta aaaatgagga gggatttatg
    10081 aaactaaaat tatctttttg tacattaatg gcatttggtt tttctaacta tctttttgct
    10141 tcagctattg atccaaagtt attttcaaga atatcttgat tttgccagta ataaaggcaa
    10201 atttcaagta ggtcaaattg gcttttaaat tttagcaaaa atcctagtca aaatatctct
    10261 tttaatgtgt ctatgattga tttttctact tcaaatcgtg gagaaaattc caaggagaat
    10321 ttaccaatat aggacaatct tatatagtca gcgcttctca tatgagtaca agtttaaata
    10381 ctgggaagta aataaaggct atgtgaaaca aggtagtgtt ttacactttg gaggggtagc
    10441 aaatagaatc gtaagctcaa gtgataattt tacttacaaa aaagaaaatg tggattttgc
    10501 tgttttaaaa atgagtaaga ttagtctcaa taaaagtgca aatttgagta aagatttaaa
    10561 tcttattgaa aaaaattctg gcgatggtgg agattttatg aatacaagga tccattttgg
    10621 gatagttgtc aaagtggaaa atgtgattat tcaaaaggta aaggcaagct ttttgatagt
    10681 tcgcgttatg agtactttgc aagagaggga agtggtattg tagctttagg ttttgaagat
    10741 acaaataaag tacccattaa gatttttgat tctaatgaaa tcaatttagg aggttttgtc
    10801 agtttaactc ctaaaaatac tgaagataag cgttttaagt tgcaatttct taattatacc
    10861 aatgataaaa gaaattcttt tacaagttct tcaatatcct gggattctgg aagtggagtt
    10921 tatgtttatg ataagatgga taaaaatggt atttagtggg tgtggtaagt acgagtaatt
    10981 gtaatgtcca ttttactatg gatatacttg tttacaggtt gattatgctt tgatcaatca
    11041 agtaaagatc aatgaatttt aaaatgctca taaagtagcc ataggatctg gaacttatac
    11101 acttagtagc gatggtttgg tgaaagatgg taaaaaaata gaaaatgtaa gtttgatttc
    11161 taagactaat gtgggttatg taagctataa aaattctttt gatgataaaa ataattgtga
    11221 taagagaatt gaagaaatgc aaaatagcaa ggatttgtat ttttctcaaa atggaagtat
    11281 aaatttaaat agcgatgtgg atttaggcgc tagtgtttta aatttgataa aaatttaaat
    11341 tggcaaataa caggcgataa atggcttata catggcggaa tttatgctga taaggttcaa
    11401 ggtagaatat aatgttaaaa ccaaaaaaga tgattttctt tataaaatgg gtgaaggaga
    11461 gcttgttgtc aaaagtcaaa gtgtggatac aggacttaga atgggtgagg accaaggtaa
    11521 gtcttgaggg tgaaggttta agttttggcg aaatttatat gaatggcaga actttggatt
    11581 tatcaggctt aacattaaat tttgatcaaa ttaaaactga ctctaataat gtttttatca
    11641 caagttctta atcaggaata catttaaatt tagaaaacaa gcaagattat ctttatcatg
    11701 gcaatatctt ttcagatgaa gctgtaacaa tgagtgccaa tacagacaaa gctttgattt
    11761 ttgatggtaa tatttacaat aaagaaggtg tttttaggac agaaaatgcc aagttaaatt
    11821 ttcaaggaca tgctagaata cacgcttatg taagcaaaga acaagctaaa aaacttcaag
    11881 aacatggttt aagtgcttta actaagcctg taagttttac acaagaagat tgggtttttg
    11941 ttttaaaaga gcttaattta gaaaaaaagc gagttttatt tagggcgtta atgtaagctt
    12001 aaaagtagaa aaccttaatg ctaaaaattc caaaatagag cttggaagta aaaatttgcg
    12061 gatcgatgaa aaagatgggg aaaatattat taataagact gatgattatt cttatggaga
    12121 tgttgtataa acaggagttg gcaaagaaat ggcttttgag caaaagcttt aaaataccca
    12181 aaatgctaag atagaaaagg tttattttag tgtaaattta aatcttgatc attctgatgt
    12241 tactttgcaa aacacatttt ttagtggtaa tatcaaaggt atcaatgata cgcaaaaaaa
    12301 tcttgcgatt aaagattctt tgtttgagtc tcatatacaa atgagcaatc ttcaagtaga
    12361 aaaaagtgct atttatagga aagttgatgc aaaaaaaatt aagtgcaaat aatacaatat
    12421 ttaaaatcaa tgtggatttt gaaaattcta aagcagatta tattaattct aaggaaagca
    12481 cacaaggagt aaataatact ttagtattaa ttttttctta ataatcctag taaaaagcgg
    12541 gttaaatatc ttgctagctc atttaaaaga tgaaaataaa catttaacaa aggaattttt
    12601 tactatacca aatgtgagca aggttttagt acgtataccc caaatgttgt tttttctcat
    12661 aatgaggaaa attttgccca gagtggaatt tagaaaaaat tgattctaag attaaagatg
    12721 aatatttttt tactaatgat aatactcaag ctattgtaaa aactaaatct atacttgctc
    12781 aagctatttt aggctccatg ataggagtgg aataatatgc ataaaagaat gggggaatta
    12841 cgcaataatc cttatgaaag tggtgtatgg ttaagaactt ttggatgggg tacgagtgat
    12901 gagtataata gtggaaaata ctttgaaatt caaagcggac atgataaatt aaacgagtat
    12961 tcgaatttcg agctttacag tggagtaggg tttttatagt gattttgttt tagatatatt
    13021 tattatcaaa atgaaataaa tgcaaatttt attccaggaa atcaaggtag attagatgat
    13081 aatgatggtt cgcataatat tatcttaagt gctgagttag gttatagaaa agcttatgat
    13141 aaattttatc ttgagccgat ttggaattta tcagtggtta tgtaggagct atggatctaa
    13201 aaggagatat tgctagttta aaacgatttt cttatattcc tttagtcgta aaaacagcat
    13261 tttttatagg aagtcaaaat taaaatttaa attttagaac aggacttggt ttgtatgtgg
    13321 atccgattaa agcaggagat caaatcttgg aggatcaagc aagtcagaga agatatgaag
    13381 gaaaaaagat caaagaatgt ttataaattt aggaaatgat tataagctta acgataaaac
    13441 acgctttagt tttgaatttg aaaagacatt ttttggcgat ttaaatgtag attggagtgc
    13501 aaatgctaat ttaagatata gtttttaaat aaaaaataat ttaaaaattg tatttttatt
    13561 ttaagctttt ttgtttataa tacttgcttt tacatttaaa ggataaagat gaaaataaaa
    13621 gttgggattt taggagcgag tggttatgca ggcaatgagc ttgtacgcat tttgcttaat
    13681 catcccaaag ttgaaatttc ttatttaggt tcgagttcta gcgtggggca aaattatcaa
    13741 gatctttatc ctaatacccc tttaaattta tgttttgaaa acaaaaattt agatgaactt
    13801 gagcttgatc ttttgttttt ggctactccg catgaattta gtgctaagct tttaaatgag
    13861 aatttattaa aaaagatgaa aatcattgat ttaagtgcgg attttcgtct taaaaatcct
    13921 aaagattacg agctttggta taaattcact catcctaatc aagatctttt gcaaaatgca
    13981 gtttatggac tttgcgagct ttataaagaa gagataaaaa aagcaagttt ggtggcaaat
    14041 ccaggttgct ataccacctg ttctatctta agtctttatc cgctttttaa agaaaagatc
    14101 attgatttta actcagttat cattgatgca aaaagtggag taagtggagc aggaagaagt
    14161 gctaaggtgg aaaatctttt ttgtgaagtt aatgaaaata tcaaagctta tggtttagct
    14221 tcgcaccgcc atactcctga aattgaagag catttaagct atgcggccaa agagaaaatc
    14281 actctacaat ttacccctca tcttgtgcct atgcaaagag gaattttaat cagtgcttat
    14341 gcaaatttaa aagaggactt gcaagaacaa gatatacgcg atatttatac aaaatactat
    14401 caaaacaata aattcataag gcttttaccg ccgcagtcgc ttccgcagac tcggtgggtt
    14461 aaatcaagca attttgcgga tataaatttt agtatagatc aacgcacaaa gcgtgttatt
    14521 gtgcttggtg ctattgataa tttaatcaaa ggtgcagcag gacaagctgt tcaaaatatg
    14581 aatttaatgt ttgattttga tgaagatgaa ggacttaaat tctttgcaaa tttgtaaagg
    14641 ataaaaatgt taatacgagc tatgcaaaaa agcgattatg aagccgttta taagctttgg
    14701 tgtgagataa aaggctttgg gataagaagc attgatgata gcaaagaaaa tatagaaaat
    14761 tttttagata gaaacccaaa tcttagcgtt gtagcagtga ttgatgaaga aattgtagga
    14821 agcatacttt gcgggcatga tggacgcata ggaggatttt atcatgtatg tgtacataaa
    14881 gatcatagaa aaaagggtat agcacacgag atgactaaat tttgtcttga ggctttaaaa
    14941 gctcaaaaga ttaataaaat cgccttaatc gcttttaaaa acaatgattt aggcaatgag
    15001 ttttggaaac attatggttt tactttaaga gaggatgcga attattacga tctttcttta
    15061 aatgagtata atcaaaccag ctttaatgct taaggaatga tcatgcaaaa atatttagaa
    15121 aaagccaatg tcttaatcga agctttgcct tatatacgca aatttaattc caagattata
    15181 cttataaaat acggcggatc agctatggaa aatgaagagc taaagcattg tgtgatgcaa
    15241 gatatagctc ttttaaaact tgtgggttta aagcctatca ttgtacatgg tggaggaaaa
    15301 gatatttctg ctatgtgtga aagattgggc gtaaagagtg agtttaaaaa cggccttagg
    15361 gttagtgata aagccactac tgaagtagcc agtatggttt taaatcatat caataaaaat
    15421 ttagtccata gtttgcaaaa tttaggagtt aaagccatag ggctttgtgg taaagatggc
    15481 gcgcttttag aatgtgtgaa aaaagatgaa aatttagctt ttgttggcac gatacaaaag
    15541 gtaaattcga aaattttaga agagctttta gaaaaggatt ttttacctat cattgctcct
    15601 attggcatgg atgaggattt taatacttat aatatcaacg ctgatgacgc agcttgtgcg
    15661 atcgccaagg ctttaagggc tgaaaaactt gcttttttaa ccgatactgc aggactttat
    15721 gaggatttta gtgataaaaa ttctttgatt tctaaaatta gccttgaaca agctaaaatt
    15781 ttagctccta aaatagaagg tggtatgcat gtaaaattaa aatcctgtat tgatgcttgt
    15841 gaaaatggag tcaaaaaggt gcatatttta gatggacgcg tgaagcattc tttattgctt
    15901 gagtttttta ctgatgaagg tataggcact ttggtgggtt aaaggatgaa aatggattat
    15961 aaagaacaaa gtcatattgt ccctgcttat aagcgttttg atatagtttt agaaaaaggg
    16021 cagggggttt atctttttga tgataaggct aaaaaatatc ttgatttttc aagtggtata
    16081 ggtgtttgtg ctttaggata taatcatgct aaatttaatg ctaaaatcaa agctcaagtg
    16141 gataaacttt tacatactag caatttatat tataatgaaa acatagccgc tgcagctaaa
    16201 aatttagcca aagctagtgc tttagagcgt gtttttttta caaattctgg tacagaaagt
    16261 atagaaggag cgatgaaaac agctagaaaa tacgccttta acaaaggtat taagggtgga
    16321 caatttatcg cttttaagca ttcttttcat gggcgtactt taggggcttt atcgcttact
    16381 gctaatgaaa aatatcaaaa gccttttaaa cctttaattt caggggttaa atttgcaaaa
    16441 tataatgata tttcaagcgt tgaaaaactg gtgaatgaaa aaacttgtgc cattatctta
    16501 gaaagcgtgc aaggagaagg tgggataaat cctgcaaata aagattttta caaagcctta
    16561 agaaagcttt gcgatgaaaa agatatatta ttaatcgctg atgaaattca atgtggcatg
    16621 ggtagaagtg gaaaattttt tgcctatgag cacgcacaaa ttttgcctga tatcatgact
    16681 tcagctaagg ccttaggttg tgggcttagt gtgggtgctt ttgtaataaa tcaaaaggta
    16741 gcaagcaatt ctttagaagc aggcgatcat ggtagtactt atggtggaaa tcctttagtt
    16801 tgtgcaggag tgaatgcagt ttttgaaatt tttaaagaag aaaaaatttt agaaaatgtc
    16861 aataaactca cgccttattt agagcaaagt ttagatgagt tgataaatga atttgatttt
    16921 tgtaaaaaac gcaaaggctt agggtttatg caagggctga gtcttgataa aaatgtaaaa
    16981 gtagctaagg tcattcaaaa atgccaagaa aatgcacttt tactgataag ttgcggggag
    17041 aatgatttga gatttttacc tcctttgatt ttgcaaaaag aacatattga tgaaatgagt
    17101 gaaaagttaa gaaaggctct aaagagtttt tgataaattt tgtaaaaaaa gtttattctt
    17161 tcccatctac tataggcaca aataaacatt cttctaaaat ttctttttgt aaatttgtgc
    17221 cattttttct aaggcgtgtg atgaattgtt tgccattgtg taaaatagga gcaactaaaa
    17281 taccatcatc gcttaattga tcgagtaaaa tttcaggaat ttgtgtcgca taagcagaaa
    17341 ataaaatcct atcataagga gcataatttt tccagccatt ttgtccatca tcaaatttta
    17401 cattgatatt aaaaagttct aattctctga aagtttgagc ggcttttttg gctaaatttt
    17461 ctatgcgttc catggtaaaa acacgcctta tgactttgct taaaatcgca gcttgatagc
    17521 cacttccaca acctatctct aaaatactat cagcattttt aaaatctaaa gccatagtca
    17581 ttttagctac agttaaaggt gaactaatcc attgagaatt tgctaaaggc aaagcatcaa
    17641 ggcgataagc atgggctttt aaaggagaaa aaatttcacg cggaatttga caaaaagcat
    17701 taaaaagctc ttcattgata aaaacttttt gtgcaatttc ttcagccata ttttgacatc
    17761 ttttttgttc aaatgcgttc attacttctc ctataaattt aaataaaaat tgtaactaaa
    17821 aaagttgaaa tagagttaaa cttagctata cttaaataaa aaggaaaaaa atgcttataa
    17881 aatttaaaaa tcatagtccc aaactaggtc aaaatgtttt tgttgcagag ggcgctaaaa
    17941 tcataggaga aatagaaata ggagatgaaa gtagtatttg gtttaattgt gttttaagag
    18001 ccgatgttaa ttttataaaa attggcaaaa gaaccaatat tcaagatctt agcacagttc
    18061 atgtttggca tagggaattt gataaaaaag gaaagttaaa agatactggt tttcctacga
    18121 taataggaga tgatgtaact ataggacata attgcgttat ccatgcttgt gtgataaaaa
    18181 atcgtgtttt aatcggaatg aatgctgtta tcatggatag tgctttgata gaagaagata
    18241 gcatagtggg tgctggaagc gttgtaacaa agggtaaaaa atttccgcca cgctctttga
    18301 tacttggaaa tcctgcaaaa tttgtgcgtg aattaaataa tgaagaaata aactttctaa
    18361 aacaatccgc tttaaattat gtggatttta aaaacgagtt tttaaaagat cttcagtgat
    18421 attttgaagt ttaggcgaga gttttacttc aaatttcaca aaacgatcaa gatctaaaaa
    18481 attctcatcg agttttgaaa tttgctcttt tgtataatct tgaatagtat ttaaagatga
    18541 ctttttaaga agtctttttt ctttgtagac taattttaaa agttctttgc gttctaaatt
    18601 ttcatcttga tttgggtttt cgtcaaaaac ataaagctca tcaaaaagga ttttttgcgt
    18661 gtttttatca taaaccctaa aaagcttttt aaaatgaggt agggttgatt tttcgttatt
    18721 ttcgctaatt ttgattttag gttttatgcc ttgatcttct aaggctgcga gtttataaac
    18781 gcaactaaaa atagggtcac ttgaagcagt gatcaatctt tcgcctacac caaagatatc
    18841 aataggtgca ttttgttctt taagtttttt aatgctccat tcatcaaggg cgttagaaac
    18901 tatgatttta catttttgaa gtcctgcttg atcaagttct tgtctgattt tcaaactcaa
    18961 ctcaagtaaa tttccagaat ctattctcac gccgccttct tgaatatcaa attctttaaa
    19021 aactttaatc gcatttttaa gtccgctatt tagacaatca taagtatcga tcaaaaaaac
    19081 aggatttttt ggataaattt tcacataagc tttaaaagct tcaagttcat tttcaaacat
    19141 ttgcacccaa gaatgtgcca tagttccatt gatagggata ttataaattt ttcctgctaa
    19201 agtacaagca cttcctatgc aacctcctat aaaagctgct cttgctcctt ttaaggctgc
    19261 ttcacttcct tgtgctctgc gtgaaccaaa ttctaaaatt ttactgtctt tagctgcacg
    19321 cacgatacga ttggttttgg tagcaataag gctttggtgg tttaaactta aaagtaaaaa
    19381 agtttctaaa agctgtgctt ctatggttgt agctttaata catagcaaag gttcgtttgg
    19441 aaaaatcact tctccttcac gcatagcata aatttcaccc ttaaatttaa agttagctaa
    19501 aaaatctaaa aattctgtat caaaaatacc ttgttttctt aaaaattcta tatcttctgc
    19561 atcaaaactc aaattttcaa caaagtctaa aatatcttca agacctgcaa aaatagcaaa
    19621 agatcctgaa tctggaattt ttctaaaaaa tatatcaaaa taacaaattt gatctttttt
    19681 attgtttttg aaatagcctt gagacattgt aaattcataa aaatcacaaa gcaaggttaa
    19741 agaagtttta gaagtcatca aagcttatac tacccttaga ataattcgtt actttacttt
    19801 caaagaaatt gctcttttga tcgttaaatt ttgaaaaatc atctacccat ttaataggat
    19861 gttttgcatt gtataactta tctaaattga tcgcgcttaa tctttgatct acaagataat
    19921 ggatatattc ttctatgata tcatcagtaa agcccatgat ttgattttga gtgatgtatt
    19981 taccccattt gatctcaaga tctccagctt ttttaaacat atcataaatt ttattgatat
    20041 tttcatcatg gaataaatca ggtctttctt tgcgtactga attgatcata ttttgaaata
    20101 ataaaagatg tgtgatttca tctctttgga taaagcggat catttgtgct gaacctagca
    20161 tttttcctgc acgtgcaagt gcgtaaatgg cagtaaaacc actataaaaa tatactcctt
    20221 ctaaaatttg atttgccacc atagccaaaa gaagtttatt atcatctaca tcgcctgcta
    20281 attcttcata aatgcttgaa ataaagtcat ttttttcacg caaagtttca tcatgctttt
    20341 ccatttcata aatcaaatct gtattatcgc aaatcgcttc taccataaca gcgtaagatt
    20401 ttgaatggtt tgcctcttca taagcttggc gtgccaaaac cgcattgatt tcaggagctg
    20461 tgatgtaagg gttgatatta tctgctaaat tattggtttg aaaactatcc atagaaataa
    20521 gctgactcca aaccaaatca tacattcttt tttcacctac agttaaatta cagcgataat
    20581 caagtgcatc tttagttgta tccacttctt ttggaaacca agtatttgcc tccattaaat
    20641 cccaaagttt taaagcccag gtatattttg ccttagtgaa atttaaaatt ccatgtgggt
    20701 taccatcaaa aattttacga tctcctaggg tttcgtttga acttggattg taaattcttt
    20761 ttctttgcat ttttaacctt tctttatgct tttagtagct atacaacttt gagttaaaat
    20821 atcgtgtaaa tttaaacgat cttttcttac aaaactgaca aataaaccaa agagtaagcc
    20881 aa
//
LOCUS       DAQSLY010000018        19754 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.018, whole genome shotgun sequence.
ACCESSION   DAQSLY010000018 DAQSLY010000000
VERSION     DAQSLY010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19754
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.018"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            109..984
                     /locus_tag="R2H98_000525"
     CDS             109..984
                     /locus_tag="R2H98_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEE9023435.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYTLALE
                     NGVDFVENIHSLSLKQFALSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(976..2319)
                     /locus_tag="R2H98_000526"
     CDS             complement(976..2319)
                     /locus_tag="R2H98_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEE9023436.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(2370..3038)
                     /locus_tag="R2H98_000527"
     CDS             complement(2370..3038)
                     /locus_tag="R2H98_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEE9023437.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(3035..4738)
                     /locus_tag="R2H98_000528"
     CDS             complement(3035..4738)
                     /locus_tag="R2H98_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEE9023438.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            4833..5714
                     /gene="ppk2"
                     /locus_tag="R2H98_000529"
     CDS             4833..5714
                     /gene="ppk2"
                     /locus_tag="R2H98_000529"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEE9023439.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            5723..6913
                     /locus_tag="R2H98_000530"
     CDS             5723..6913
                     /locus_tag="R2H98_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEE9023440.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            6992..8164
                     /locus_tag="R2H98_000531"
     CDS             6992..8164
                     /locus_tag="R2H98_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEE9023441.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYALKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            8164..10089
                     /locus_tag="R2H98_000532"
     CDS             8164..10089
                     /locus_tag="R2H98_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023442.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDFKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTIFTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            10091..11461
                     /locus_tag="R2H98_000533"
     CDS             10091..11461
                     /locus_tag="R2H98_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEE9023443.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMEELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFPKY"
     gene            complement(11464..12642)
                     /locus_tag="R2H98_000534"
     CDS             complement(11464..12642)
                     /locus_tag="R2H98_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEE9023444.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKIHLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDIHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(12629..13639)
                     /locus_tag="R2H98_000535"
     CDS             complement(12629..13639)
                     /locus_tag="R2H98_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEE9023445.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            complement(13640..15016)
                     /locus_tag="R2H98_000536"
     CDS             complement(13640..15016)
                     /locus_tag="R2H98_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEE9023446.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNSFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            complement(15059..15562)
                     /gene="ctf"
                     /locus_tag="R2H98_000537"
     CDS             complement(15059..15562)
                     /gene="ctf"
                     /locus_tag="R2H98_000537"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEE9023447.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            15742..16737
                     /locus_tag="R2H98_000538"
     CDS             15742..16737
                     /locus_tag="R2H98_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEE9023448.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGITDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            16747..17661
                     /gene="pstC"
                     /locus_tag="R2H98_000539"
     CDS             16747..17661
                     /gene="pstC"
                     /locus_tag="R2H98_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEE9023449.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVIT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            17658..18746
                     /gene="pstA"
                     /locus_tag="R2H98_000540"
     CDS             17658..18746
                     /gene="pstA"
                     /locus_tag="R2H98_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEE9023450.1"
                     /translation="MKKLFKKRQKASKSLKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDSTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            18743..19483
                     /locus_tag="R2H98_000541"
     CDS             18743..19483
                     /locus_tag="R2H98_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEE9023451.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITTLIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            19545..>19754
                     /locus_tag="R2H98_000542"
     CDS             19545..>19754
                     /locus_tag="R2H98_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEE9023452.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVI"
BASE COUNT         7068 a         2654 c         3332 g         6700 t
ORIGIN      
        1 cagatcctgt gtttgtcaac ggagttgaag ataaggataa gagtcgtcgc atagaaataa
       61 aatttagcat taaaaatgat aatgctttaa aggatgtaga aaaattcttt gaatttcatt
      121 aaaacaatta gtcctataca aaaaatcaat tttaacggat ttgaatttta tattaaaaga
      181 gatgatttat taggggaaat taatggaaat aaagctagga aacttgcttt ttatatccat
      241 caaagatatc ctaaaaatca atcttttgta agttatggag gaagccaaag taatgctttg
      301 gcggcattaa gtatttttgc taaacaaaga tcatataagc ttgtttttgc ttgtgaaaaa
      361 atttctactt ttcttaagaa taatccttgt ggaaactata ctttagcttt agaaaatggt
      421 gttgattttg tagaaaatat ccattcttta tccttaaagc aatttgcttt gtctttgtgt
      481 aaaaaagatg atatttttat agaacaaggc atagctaatt tagaagctca atatggctat
      541 atggaacttg ctcaagaaat tcaaatgcaa agtcaaagtt taaagcttga ttttgatatt
      601 tttttacctt cgggtacagg cacttcggca gcttttttgg caaagtattc taaatttaaa
      661 gtatttactt gcgcttgtgt aggtgatatt aaatatctta aaaaacaaat tttaacatta
      721 gatccaagct atgatttttc aaatttagaa tttttaacaa gtgataaaaa atatcacttt
      781 gctaagccgt ataaagaatt ttatgagctt tatatggatt taaagttaaa gtgcaatata
      841 gaatttgact tgttgtatga tattttagga ttaagtatag cattaaaaca agagtggaaa
      901 aaaccattgc tttatataca tcaaggtgga attttaggaa attccactat gttagagaga
      961 tataaattta aaaaattagt ttaaaattcc atagataaaa atgattaaaa taatcaaagg
     1021 tactatatat tttacataat aaaaccaaat tccaaaccat gaacttttaa gcgtattatt
     1081 attgctaagt tcttttagac tttcttgttt gcctaaaatc caacctacat aaatgcagca
     1141 aaaaaatgca gttaaaacaa acaaaatatt tccactaatg aaatcaaaac tatcaaaaat
     1201 gttttttcct ttgatgataa caatatcacg ccaaggccca taagttagaa tacaaggaag
     1261 attgccaagt atgaagataa accctagagt taggttaata gaaagatttt tagaatattt
     1321 aaatttttct tctaatacgc taataataac ttgataaatt ggcaagcttg tggttaaagc
     1381 tgcaatcaag agtaagacaa aaaataaaat acacacaatg gtgccaaaat ggatatgaga
     1441 aaatgctata ggtaaagttt caaaaaccaa agaaggcccg ctatctggag caagtcccgc
     1501 tgagaaaagt gctggaaaaa tcataaaacc agccaaaaca gctatgatag tatttaaaac
     1561 ccctgtataa atagcggttt ttgccatatt ttcattttta ttaagatgag atgaaagtgt
     1621 tatcattacc ccaaaaccta gggataaagc aaaaaagact tgtcctaaaa catcgattaa
     1681 aagttttggt gataaaattt tactaaaatc aggttcaaga taaaatttaa ctccagccat
     1741 agctccatca agggttaaat tgcgtcctac aacaataata agacagataa ataacaaagg
     1801 cattaaaaat tttacggatt tttctatacc atctataatg cctcttttta aaataatata
     1861 attaataatt acaaaaacag tggtaaaaat accaactcct aaaggattga aggctatttt
     1921 gtcgttaaaa aactgatgag taaattcttt gcttactaca ttggcaagac taaaattccc
     1981 tagggttaat tcccaaatat aaactaaaac ccatcctcca agtaccatgt agtaagccat
     2041 tatgccaaag cttcctaaaa gtcccatata tccaatactt tgccattttt gtttgaaagc
     2101 atctacgcta tttgtcatcg cttttctgcc tatgacattt tcaactaaaa taacaggaat
     2161 gcctatgata atcatggcta tacaaaaaac taatacataa gcaccgccac cattttctcc
     2221 tacaagatag ggaaaacgcc aagttgctcc aaatcctatg gttgctccag caactgttag
     2281 aatataagtt agtgtgctac tccatgtttg tctttgcatg attatccttt cgaaaaagaa
     2341 ttattttacc taaaaataac tttaaaaact tataagctat ccatatagct tatatcgtaa
     2401 gtatttttta agcgtttgtg tatcgtttcg tgccaatttt gagatatgag agagtttaat
     2461 ttttctaatt tatctaataa attcggattt tgcttaagaa tttgatgagg ggagtaaaaa
     2521 agttgattga gttcaaatac actaagtgaa gtagaatttt tttctaaaat tttaatgttt
     2581 tcatgctttc gtatttgtcc aacttgtaaa actttataat accatccact caagcccgtt
     2641 ttaaaaattt catgtgtaaa atttggatta ttgtgaattt tagaaatttt tacacaaggt
     2701 tttctaggtt cgcttacttg cagtattgca tttgaaaatt gatgtatatc acctatgcaa
     2761 acattttgtt cacaaagccc atcgatgctc aaattttcac ccattgagcc aaaatttagc
     2821 tttttattaa gaaatctttc ccatatagga tagttttgac aagagttggc aaaaatagcc
     2881 ttatggtagc ctccatgatg aattttatca gctatttgat catctaaaac acctagaaaa
     2941 tcaatttgtg tttcttctag gtaagtatct ttaataaatg cgctttggaa atttttatag
     3001 tttttaattt tccctatttg caaactttga attttcatgg ttctattttt tttaataaat
     3061 catcagcact gataaaaccc gtgattttta atttttcttt tccattttca aagaaaatta
     3121 aaacaggtgg gccaaaaaca ttaaattctt tcatggtttt aatttgttca ttattatttt
     3181 cgcttacatc aactttgata agtttgtaat tttgcatttt ttgtatgatt ctttcatcgc
     3241 taaaggttaa ttcatctaaa agtttgcaat tttcacacca agatgcagta aaatcaagca
     3301 ttataggctt tgtatttgtt tgtatttctt gctttaattg ttcaaaattg ttgatataat
     3361 catagcttaa agcatgtttt gaggcagata tagtattgaa atttaaagga tttaagaaat
     3421 ttttagcccc aaaaagtcct cctaggaaaa tacttagaga ataagctaaa ataagaatta
     3481 aaatactttt tttaatttta gaaattattg taaaactttt ttcaaaaatt cccataaaaa
     3541 cactaaaaaa tacacctaaa attccatagg caattaaaat gtaattttct tcaataattc
     3601 tagaaagtat ccaaatagcc atagccaaca taacaaaacc aaagaaaatt tttacttttt
     3661 ccatccaaaa accaggttta ataaaaccta atcctaagcc tatgaaaagc aaaggtatac
     3721 ccatgccaaa actcatgata aaaagtgcac taccacctaa tagagcattg cctgtattgg
     3781 ctatataaat taaagcacct gctaaaggag ctgctacgca aggacctact attaaagcag
     3841 ataaaaatcc catgatggct atacctacaa ctcccttccc tttttcgctt tttttatgta
     3901 taaaggtttg aaatcttaat ggcaattcaa aacgaaaagc tccaaacata gcaaaagcaa
     3961 aagctatgaa aattagagca aaaagaatta aaataatagg tttttgtaaa attccttgaa
     4021 tacttgctcc tagaaaactt gctataactc cagcaatagc ataggctaaa gacatgaaaa
     4081 aaacatagat aaaagagaga aaaaaactat atttttttga aaatttagca ttactttttg
     4141 ctacgataag agaagataaa atcggaatca taggtaaaat acaaggtgtt aaggagagta
     4201 aaagtccata gccaaaaaaa cttagcaaaa tccaaaaaaa gttatctgtt gctaaaaaat
     4261 ttgctataga gctttcttca gattcaattt tagttttttt atctgttttt tgagctttgt
     4321 aaggttttga aatttcaaaa gcatcttttt tagaaatgag atcaaagtac caagtttgag
     4381 gattataaca caagccttgt tcagaacagc cttgaaattc gagtttgatt aaatttgtgg
     4441 tattttttgc aaagcgctct agtaataaat ttggcaaagc taaatttaat ttttgataat
     4501 aaacattttc attacctctt gtagaacttt gaggtagatt aatcaaagaa cttatatctt
     4561 tttcgtttat atataattta agtttattag aataaagata aatatctttt ccaagttcaa
     4621 tatcaattga gatagagtta ttataagagt ttgattttac attaaaagct tcatttaaag
     4681 ataatataga agcaaaacat aaacaaaaac ttaataaaat aataccaaaa atacgcataa
     4741 atttcctaaa aacttatttt ttcctttatt tttaacttca attataattt attatggtaa
     4801 atttacttta aatactttat aaaggtttga aaatgcaaga aaataattct ccaaaagcgc
     4861 aagcggttgt taaaaagaat gaaatttatg tttctgttaa aagaaagaaa agtacaatag
     4921 aatatgaaaa agatttaaag aatttgcaaa ttgagctttt gaaatttcaa aatcatgtta
     4981 aagccaaggg tttaaaggtt cttatactta tagaagggcg tgatgcagct ggaaaaggtg
     5041 gggcgattaa acgtttgatt gagcatttaa atccgcgtgg ttgccgcgtt gtggctcttg
     5101 aaaaacctag tgatgtggaa aaaacacagt ggtattttca gcgttatata gcacatttgc
     5161 cctcagccgg tgagattgtg atttttgaca gatcttggta taatcgtgca ggagtagaac
     5221 cggttatggg tttttgtaca ccgcaacaac ataaagattt tttaagagaa gtgcctttgt
     5281 ttgaaaatat gatttcaaat agtgatatta ttttttttaa attttatttt tcagtatcaa
     5341 aagacgagca aaaaaaacgt tttgaaaaac gccgaagcga tccacttaaa caatataaat
     5401 tatctcctgt ggatcaaaaa tcgcaagaat tatgggataa atatacttta gctaaatact
     5461 ctatgctttt agcatctaat actccaactt gtccttggac tattatttct tctgatgata
     5521 agaaaaaagc aagattaaat ttattgcgtt ttatactttc taaggtagaa tatccaaata
     5581 aaaaaactgg agatttttcc aaaattgatg caaaattagt gcgtagtgga gaagaagaaa
     5641 tacgaaaaat ggaggcgaat ttggaaaaac ttgacagtaa aaaagcagat gagaaaataa
     5701 aagatttaga ttaaggaaaa gaatgcaaaa gctggttgaa aatttagcac taaagtacta
     5761 tgataaagta gttgatttaa gacatcaaat tcatatgcat cctgagcttg aatttgaaga
     5821 agaaaataca gcccatttag tgtgtaaaat tttagatgag tttggcatta aatatcaaaa
     5881 aaatattgca aaaacaggaa ttttagctat tatagaagga aaaaagaaga gtcagaaaaa
     5941 accaaaatgt gttcttttaa gagcggatat ggatgctttg cctgtgcaag aaaaaactaa
     6001 tctaagctat gcttcaaaaa ttgatggtaa gatgcatgca tgtggacatg atggacatac
     6061 agcagggctt ttgggagctg ctttgatatt aaatgagctt aaagatgaat tttgtggcac
     6121 gattaaattt atgtttcagc ccgcagaaga gggaagcggt ggagctaaac ctatgataga
     6181 atcaggtgta ttggaaaatc cttatgttga tgcagttttt ggttgtcatt tatgggggcc
     6241 tttgcttgaa aatactgctc aaattgtaag tggtgaaatg atggctggaa cggatatttt
     6301 tgatttggaa tttattggca gaggagggca tggagctcat ccgcacactt gtatagatcc
     6361 tataattatg acaacgcaat ttgtaaataa tatacaaagt gttatttcta gacgtttagc
     6421 cccttatgaa gcaggggtga ttaccgtagg tcaaatttgt gcaggaacta cttataatgt
     6481 tattcctaca aatgcttatt taaaaggaac tgtgcgcttt ttaaatgata aaacgcaaga
     6541 tattttaaaa agttctttag aagaagtggc tgctgctaca gcaaaatcca atggtggaga
     6601 ttataagctt aaatatacta aagaatttcc tccattgatt aatgatgaaa aagctgtttt
     6661 aatagcaaga aaagcttttg caaaggtctt aggagaagaa aatatcattg tttcttctaa
     6721 acctgacatg ggggctgaag attttgcttt tttaacacga gaaagaatgg gggcttatgt
     6781 atttgttgga atttcaaagg atttaaatca tccagctttg catcatagtt ctactttttg
     6841 ttgggatgat gaaaatttaa aagttttaat gcagggtgat gtgatgatgg ctttagaatt
     6901 tttaaattta taaaatagaa ttaaaaattc acaaaaaatt cacaaaaaat gagtaaaatt
     6961 taatcttgat ttttctttag gatttgttat tatgaaaaag aagattgttt taatcatttt
     7021 aattgcaata cttggaagtg ttggggctta ttttattttt tttaataatg atgaaaaaat
     7081 cagctattta actcaaaaaa tacaaaaaaa agatatatct caaaccatag aggcagtagg
     7141 aaaggtatat gccaaagatc aagtcgatgt gggtgctcaa gttagtggac aaattataaa
     7201 actttatgtt gatgtgggaa ctcatgtaaa gcaaggtgat ttgatcgctc aaattgataa
     7261 agataaacaa caaaacgatt tagatattac aaaagctcag cttgaaagtg ctaaggctaa
     7321 tttagagagt aaaaaagttg cccttgagat tgcgaataag caatatcaaa gagagcaaaa
     7381 actttatgca gctaaagcaa gttctcttga aaatttagaa actcaaaaaa ataattatta
     7441 tgctttaaaa gccaatgttg cagagcttaa tgctcaagta gttcagcttg aaatcactct
     7501 taaaaatgca caaaaagatt taggttatac aaccattact gctcctatgg atggtgttgt
     7561 gattaatgta gctgtagatg aaggacaaac agttaatgct aatcaaaaca ctcctactat
     7621 agtccgtata gctaatttag acgaaatgga agtaagaatg gaaatagcag aggctgatgt
     7681 gagtaagata aaagtaggaa cagagcttga tttttctttg cttaatgatc ctcaaaaaac
     7741 ttatcatgct aagattgcaa gtatagatcc agctgatact gaagtgagtg attctagtac
     7801 aagctcaagc tcatcaagtt cgagttcttc aagctcaagc tcatcaaatg ctatttatta
     7861 ttacgcaaaa ttttatgtag ccaataaaga tgattttttg cgtattggta tgagtataca
     7921 aaatgaaatt gtcgtagcaa gtgcaaaggc tgttttagca gtgccaactt atgcaattaa
     7981 aagcgatcca aaaggctatt atgttgaaat tttggaaaat caaaaagctg ttaaaaaata
     8041 tgtcaaactt ggcattaaag attctatcaa tactcaaatt ttagaaggtg taaatgaaga
     8101 tgaagaattg atagtaagct caagtgctga tggtttagct cctaaaatga agttgagatt
     8161 ttaatgattt ttcttaaaaa tatttgcaaa aatataggcg aaaatgccat tttaaaaaat
     8221 gtaagtttaa gtatagaaaa aggtgaattt gttgctatta taggacaaag tggaagtggt
     8281 aaaacttcac ttttgaatat cataggaaca ttagatacac caagtagtgg aacttatgtt
     8341 tttgatgagt atgaagtcac taaacttaat aatgatgaaa aagcaagatt aaggcgtgaa
     8401 aaaataggct ttatatttca aagatacaat cttttaagct tgctgagtgc taaagaaaat
     8461 gtttctttac ctgcagttta tgcgggaaaa aatttacaag aaagaagtca aaatgctaaa
     8521 aaactcttaa atgatttaga attagctcac aagttagatt ttaagccaaa cgaattaagc
     8581 ggagggcagc aacaacgcgt ttctatagca agagctttaa tcaatggcgg agagcttatt
     8641 ttggctgatg agccaacggg agctttggat agtaaaagcg gtattatggt gcttgaaatt
     8701 ttacaaaaac ttaacgagca aggtcatact atagtcttag taactcacga tccaaaaatt
     8761 gcagcacaag ctaaaagggt tatagagatt aaagatggag aaattttaag cgatactaaa
     8821 aaggaaaaag ctcaagaaaa acttatttta aaaacaatgc ccaaagagaa aaaaacactt
     8881 actttgctta aaaatcaagc ctttgaatgt tttaagatag cttattcttc catacttgca
     8941 cacaaacttc gttctatttt aactatgctt ggaatcatca taggtattgc ttctgtagtt
     9001 tgtgttgtag ctttaggatt aggctctcaa gctaaagtgc ttgagtctat tgcaagactt
     9061 gggacaaata ctattgaaat tcgccctgga aaaggatttg gggatttgcg ttcgggtaaa
     9121 acaaggctta attttagtga tttagaaaca ttaagatctt tagaatattt agaagcagtt
     9181 gatgctcatt caaatacttc aggagtggca acttatacca atatttcttt aagcgcaaga
     9241 gctgaaggag taggggtaaa taattttgct atagaaggtt taaggataga tgcgggaaga
     9301 attttaaata atgatgatgt aaaaaatagt accaatgttg ctgtattgga ttttaatgct
     9361 aaaaaaaatc tttttcctga tgaaaaaagt gaaaatattt taggtcgtgt ggtgcttttt
     9421 aattctcaac cttttaagat tataggagtt ttgcaaaaag atacagacaa gcctatagaa
     9481 gataatgtag tacgtcttta tataccctat acaacactga tgaataagct tacaggagat
     9541 agaaatttgc gtgaaatcat agttaaggtt aaagatgatg tgagttcaac tttggctgaa
     9601 aatgctatta taagaatttt agaaattaaa cgcggacaaa aggatttttt tacttttaat
     9661 tctgacactt ttaagcaagc tattacagca aataaacgca ctacaaccat atttaccgct
     9721 tgtgtggctg tgattgcttt gattgttggg ggtataggag tgatgaatat catgcttgtt
     9781 tctgtaagtg aaagaacaag agaaataggc atacgcatgg ctataggggc tagaagagaa
     9841 gatattatga tgcagttttt aatcgaagcg gttatgattt gtactatagg ggcgatttta
     9901 ggtgtgattt tatcgatttt tgttattttt gcttttaata ctttaagtac ggattttcct
     9961 atgattttaa atgcctattc tgtgcttttg ggacttttaa gttctatgtt tatcggtgtg
    10021 gtttttggtt ttttccctgc aagaaatgca gcaaatttaa atcctattag tgcattatca
    10081 aaggaataaa atgaaaataa tacttagcat ttttttagca tttttcttga gcgcttgtgg
    10141 tgtaaaactt agcttgccta aagaagttga tttaactcaa gaacaaatga aagatttaaa
    10201 tcttacttat gattggtata gatcttatga taatgcaaaa ttaaatgaat ttctaaattt
    10261 tgttttattg aataatagtg atattaatat tgctagaaaa actttgcttt cggctttggc
    10321 tagagctgat ttgattgatt atgatttata tccgacttta agtggaaatt tgggttttgg
    10381 tgcggataaa gatttaaatt caggcaaaca aagtaaaaat ttcaataatt ctttaaattt
    10441 aagctatgag cttgatattt atggcaaatt aagagatagt gcaagtgcga gtgaatttag
    10501 tgcaaaagca agtgcttatg atcttgaaaa tttaaaaata agtatgatca atacagcttt
    10561 aaatgatgtg tttgagctgg cttattttaa cgatgtagat aaattgcttc gagcttatct
    10621 ttcaaattta gaacaaatgg aagagcttta taattataaa tacaagcttg gaaaaataga
    10681 agaattagat cttttaaaca tagaacaaag cttattaaga gctaaacaaa atttattaag
    10741 caatgatcaa aatcgtaatt tactcataaa aaatttacaa gatttattgg caaggcaaga
    10801 aggttttgct tatatagagt attttaaaac tttatcttta aatgatttta aaaccttaag
    10861 tcctgatttt aatatacctt taaaagcttt agcgtaccgt gcagatgtga gatctaaact
    10921 caatagctta aaatcagcct ttaaggatta ttcttccatg caaaaatcta ttttgcctag
    10981 tatttcttta ggtggagcat taagcggaag tgataaaaaa atcgatgata gttttaaatt
    11041 tgaaatttta agtggcaatg ttaagatttc tttacctttc ttagattatg gtagagtaaa
    11101 gcaaaatatc aaaatttcac aatttactta tgagcaactt ttaatttctt atgagcaagc
    11161 cttgcaaagt gcgatgaatg aatttgcatt gaattataaa gattatcaaa gcgacacctt
    11221 gcttttgcaa aatttgcaaa atattaacat taaacaagag cttatcacta aggcgtatta
    11281 tgaaaaatat attttaggaa aaagtgaatt aaaagattat ttggatgcaa acaatacttt
    11341 aaattctacc cagcaagaat ttttaagagc tagatttaat cttttaaaaa ccattaattc
    11401 ttactatcaa atcacagctt taagttttaa tgatgaaaac ttagaatttc ctaagtatta
    11461 aatttaataa tcaatgatat tttttaaatc ctcgagtaac tttttagcca tcagctcata
    11521 gccttttata gtaagatgta catcattgag cgaaagcttt tgttctatcc atttgttttt
    11581 tcccccacta tcttgcataa actgatgtat atcaaaaata agagtttttt cttctttagc
    11641 aacttcatat aatgctttgc gtatggtaaa aaaatcagga gcaagcttgt agtttttacc
    11701 ttgtttttga actacagttg gtggagagat tagcatgata acagcgtttt tattgtaagt
    11761 ttttaaaata ctaatccatt tttttaaatt atttttgaat ttttgttttt caaacccttt
    11821 aaagagtgca tcattagaac cataggcaag aataattaaa tcattgtgta aaagtcctag
    11881 ttcttttttt acaactgttt gattccaaga gagccataaa tcacttttgg caccattgat
    11941 tgcaatggta tctaagaaaa cattattatc tttatttgtg atgaaatatc ctcctagttc
    12001 agcatccttt tgtaaggctg aaatttgcaa aggaagatca agttctagtt ctttataaga
    12061 ccatttgtta atttgtgtag ttcttaactc atagctttga ttttttgcat ctttgatgct
    12121 aaaagcattg gtattttgct tggctttaaa taaaaatcct attttgaaat tttttttatc
    12181 tagggttgta tcaaggtgga tttttgcgcc tttagttttt gctttggcta ttatcccacc
    12241 tagtggaaaa ttatgtccag cattagcagg atttcttgag tttaaaattt caaagttttt
    12301 ataagaataa acaagattaa gattttgttg atatttaggc tgtaaaggat aggcaaaacc
    12361 tatagagtta gaacggatta aatatcctct tatgacacgc ggaaagaaat cagccgccat
    12421 atgagaatcc ccataaattc taattcctat gttttgattt ttttctaatt ttttttctag
    12481 atttttaaga tcttttttta atacataact tgttaaagca gagtgatttt tgttttgatt
    12541 gagtatggaa tctattgtgt catttgtatt taaattttgt gcataagagc tagtaaaaat
    12601 aataaaaaac aataagataa ttttaaattt atttactagc attttcttcc ttaagtttta
    12661 tgtgttctaa taaaagttta gacatttctc ttgcgccact tggagtaaaa tgaaccccat
    12721 catctgttct tacttttata cttctattgt tttcatcttt tatataagct gagtattcat
    12781 cattgacact aaaaaatagc ttagtgttga taaaaatttc tttattttta agaatttcat
    12841 cgctgtaaat tttattgagc acttgtattt ttttgttcaa atcttctttt tttacaggag
    12901 ggatttcaaa ccaaaaaact ttggctttat gttttttagc gattttaatg atttcatcta
    12961 cacgacttgt gtaaatatct atccaagaag gggagccaaa acgatggtaa tttcctcctt
    13021 ttttaatatc ccaaggatca ttagcgccaa gaagaacaac aagatattta atatttgagt
    13081 ttttaataaa agcttcattg gtggcttttg accagtcaaa ataggattta taagaaaggc
    13141 ctgtattttg tttgctaaga tcggttacct taagatttaa atttcttaaa tctctattta
    13201 aggctattgc aacaccttgc attaaagaat ctccgataaa taaaaactca tctccatttt
    13261 gtagttctaa tttggtattg tcgataaaac taatatttgc atctcggatt aaggttggat
    13321 ttgtttcttt atgagaagtg ttttcatcat tttctaaagt gtttagaact ttatctattt
    13381 tacttaagtt ttcatctatt gatttatttt cttgatttgt agtttcttca ttagtttgag
    13441 gcaagggttc gttgcttaaa attgcacgaa tttgttctaa tttaattttg aagccattgg
    13501 cttcttttaa aagatcatta tgaggataga atgcaaagtg atatttttgt tctatataag
    13561 agctaatgct ctgattcata actacaacaa ccaagccaag cactataatc aaaataaaga
    13621 aaaatctaac cacactcatc taaaaactcg aataaataaa atcaggaatt ccatctggca
    13681 taaaagcaaa aaccaaaagt aaaataaaag ctatgataaa aggttttagt aaaaatggag
    13741 taagatttaa aatcttaatg caatattctt taaaattaat aaataaagga tagatcataa
    13801 aaagaacccc aaaagcaacc aacatataga tatcgttata agatggaatt tggaaggaat
    13861 tataataaca agctttaaaa tattctattg catcttctag atttttgcta tagtaaaaga
    13921 aaatccaagt aaaacataca aattgaaagg ttaaaaatct tcctaaagct ggaatttttt
    13981 gtaaactaaa tttgcttaaa gctagcaaat gtataaaaac tatgccaata ccatgcaata
    14041 aaccccaaac aataaaagca agtgtattgc catgccacat acctgaaagt ataaaagcga
    14101 tgagtatgtt aactatagtg cgtggcattc cttttctatt gccccctaaa ggtatataga
    14161 tataatctct tataaaggtt gaaagactga tatgccatct agcccaaaaa tcttttaggt
    14221 tttttgcaag ataaggcatg ttaaagttag atggaagggt aaaacctaac attaaagcaa
    14281 aagcacaaac taaatcaaca tatccgctaa aatcgcagta tatttgaatc gcataggcgt
    14341 aaattgcgct taaaagttgt atgaaattat aagattgtgg aaagtctaaa atacttttag
    14401 cataaattcc aaggtaattg gctattaaaa cttttttaac tataccaaaa acaagcaaga
    14461 tgatgattaa atttgcatgt ttaaattcgc gtttttgata ggcctgctca aagaaaaaag
    14521 aacttcgcat aataggccct gaaagtagtg ttggaaaaaa tgataagaag gttgctaaat
    14581 ttaaaaaact ttctaaacgg cgtttttgat aaacttctac aagataggtg atagaagtaa
    14641 aggtataaaa actaattcct attggtaata ctaaatcaat atttaaaaat tctaaaccga
    14701 aaaaatttaa tatctcatca acacttcctt tgatgctagg aaagtattta aaaaaacata
    14761 aatttaaaat aataaaagcc atgcaagtag caaaaatata acgcttgcga cgcacaaaaa
    14821 ttagcaaggc aaaatagtgt ataaaaaagg tatatataaa taaaactaag gcgaaataag
    14881 gattgattaa aatataaata atataagaga aaattaaaat taaaatattt tgtattttgt
    14941 aatcattttt aaaagtccaa taaatagcaa aaaaagctat cattaaaata ctaaattcta
    15001 gagaaaaata agtcatacct tcaatccaaa gcgagatttg cccatagtag ggcaaagatt
    15061 atttttttct gcttaatgca atatttttga tgtattgatc agctaaataa agtccatttc
    15121 cgtgttctcc gattaactta atcttgtcaa ctataccgcg gaaaagtgct tcttcttcgt
    15181 gttgttcgct tacataccac tgtaagaaat taaaagtaga atagtcttta tgtgttagca
    15241 tgtgttcaac taaagtattg attgattttg tgataaattg ctcatgttca taggtttttt
    15301 caaaaacatc aagtaaagat ttgaaatttt gttcaggctg ttttacttct tgaagctcta
    15361 catgagaatc tgtttcatta agataagtga taagcttttt agcatgatcg ctttcttcgc
    15421 ttgcatgtgc aaacaagaag gctccagctc catcaagact gttttcatag caccaagaac
    15481 tcatactaag atataagttt gccgcataca tttctttgtt tatttgttca ttgagtaatt
    15541 ttacaacttc tttagaaagc attcttatct ccttattaaa atttaaaatg ttttataatg
    15601 atatattatt tttttaaaaa caagctaaat tttttgatag ttaaaaatta tatttaagaa
    15661 aaatacaaaa taaaaaatgt ttccaaaatg tttccaagtt tttttaaact tccattactt
    15721 ttttaaagtt aaggagaaaa aatgaaaaaa attctatctt taagtgtggc aagtcttgca
    15781 ctttgtggtg ctttaaatgc agcagattta aaaatcgcag gttcatcgac tgtgtatcct
    15841 tttacttctt ttgtagctga agaatatgct tcgattaaaa atacaaaaac ccctatagta
    15901 gagagcttgg gaacaggggg tggatttaag gtattttgtg aaggaactac tgatatttct
    15961 aatgcttcaa gacctatgaa attaagcgaa tttgaaactt gcaaaaaagc agggataact
    16021 gatatagtag ggatgatgat aggttatgat ggtatagttt tagctcaaaa taaaaccaat
    16081 gctccattaa atatcacaaa aaaagaactt ttcttagcat tagcaaaaga aattccacaa
    16141 aatggaaaac ttataccaaa tccttataca aactggaatc aaatcaataa aaatttacca
    16201 aatcgtaaaa ttagtgttta tggtccacca tcaagttcag gaacaagaga tactatagaa
    16261 gagcttgtaa tgagtgatgt gtctaaaaaa attcctgagt ataaaggcga gtataaaacc
    16321 atacgccaag atggtgctta tatcccaagt ggtgaaaatg ataatctaat cgtttccaaa
    16381 cttactattg ataaggatgc ttttggaatt tttggttata gctttttagt gagcaattca
    16441 gacaaaatca atgctgctaa tatcgatggt gttacgccaa gcgaagaaag tatcgcagat
    16501 gaaaaatacg aacttgcaag aagtttgttt atttatatca atgctaagaa aaatccaaaa
    16561 gaagcctttg attttgcaaa aatttatatg agtgatgatt tggcaaaaag tggtggagag
    16621 cttgaaaaaa taggacttgt tcctttaagt gatgataaat taaaagcttc tcaaaaacat
    16681 gtagaagata gaaaaatttt aaatgatgag cttgtaaaag ctggaaaagt tttttaagga
    16741 aaaactttgt taaaagaaaa aataatcaaa tttgcacttt ttttatgtgc ttttgtaagc
    16801 gtgatagtaa gttttgctat catgcttaca attttaattg aagctttaaa attctttcaa
    16861 aaagaaagcg ttattacctt tttattctca agtcagtggg cagctgatgc agcttttatg
    16921 aatgcagatg gcacgagcaa acaaggtgtt tttggagcgc tatcgctttt ttggggaact
    16981 ttttatattt cattgattgc tatgctaacg gctttacctt taggggttat gtgtgctata
    17041 tatttaggtg tttttgctgg caaaaaatct aaaaattact taaaacctat tttagaaatc
    17101 attgcaggga ttcctactgt tgtttttgga ttttttgcgg ctatagttgt agcgcctttt
    17161 atagtgtggt ttttttcttt atttggcata caagcaagct ttcaaagtgc tttaggcgca
    17221 ggttttatca tggggatcat gatagtacct atagtggctt cgttatctca agattgcatt
    17281 gaagcagtaa gcgagaaaag gattaatggc gcttatgctt taggtatgac aaaaaaagaa
    17341 gtggtttttg ccgtgatttt acctgaggct attcctggta tagttgcagc ttgtctttta
    17401 ggactttcaa gagccttagg cgaaactatg atagtggtga tggcagcttc tttgcgtcca
    17461 aatttaactt taaatttttt agaagatatg acaacggtaa cggtaaaaat cgtagaagct
    17521 ttaagtggag atcaagcttt tgatagttct ttggctttaa gtgctttttc tttaggtttg
    17581 gtgctttttg tcatcacttt aatcatcaat atgtttagcg tttatcttat caatcgcttt
    17641 cacaaaagga aaaatttatg aaaaaacttt ttaaaaaaag acaaaaagct tcaaagtctc
    17701 ttaaaagact ttgtaaaatg ggactttata ttaatttaat ttttctttgt atctttttag
    17761 gaagtgtggc ttatcttgga tttcctgctt ttaagcaaac ctatattttt gtagaggcta
    17821 atagaaattc tcctgcttat gatcttttat ctcgtgctga gcaaagaaag ataagaacag
    17881 ggcaaatcac tgaaaaatct tggcttttgg caaattcaga agtagatcaa tatatgaagc
    17941 aaaaatataa tcgccttagt gaaaaacaaa gaactttagt cgatgatctt atgcaaaaag
    18001 gcgagataga gcttaaattt aatagcaatt tctttttaaa tggggactca aaatctcctg
    18061 aaaattcagg aattttatct tcagttgtag ggactttgct tgttatgctt gtttgtatgg
    18121 ttgtgagtgt tcctataggc gttgcagcgg caatttactt agaagaattt gcgccacaaa
    18181 atatccttac acattttata gaagtgtgta ttaacaacct tgcaagtatt ccaagtatct
    18241 tgtttggact tttaggactt ggagtgttta tcaatctttt tggaatgcct cgctcaagtg
    18301 ctttagtggg tgggcttact ttggcgatca tgagtttacc tattatcatt gtttcaacta
    18361 aggcagcttt aaaaagtgtg gacattaaca tgaaaaatgc cgcttatgcc ttaggtatga
    18421 ctaaggttca aatggtaaaa ggcattatgc tacctttagc tatgcctatg attttaacag
    18481 gttctatttt gactttagca ggggctatag gcgagacagc acctttgatg attatcggta
    18541 tgatagcatt tatccctgat gtagctagtt cgatttttga ttcaactagc gttttgcctg
    18601 ctcaaattta ctcatggtcg gctatgccag agcgtgcatt tttagaaaga accgcagcgg
    18661 gtattattgt gcttttagga cttttagtcg tattaaatct tagtgcaata ttattaagaa
    18721 aatattttca aggaaaatta aagtgatagc aaaaacaaca aatttaaatt tattttatgg
    18781 aaaaaaacaa gctttatttg atatcaatat gcaaatagaa caaaacaaaa ttactacact
    18841 catcggtgct tcaggatgtg gtaaatccac ttttttgcgc tgttttaata gaatgaatga
    18901 taaaattgca aaaatcgatg gtttagtgga aattgaagga aaagatgtta aaaatcaaga
    18961 tgtagtagcc ttgcgtaaaa atgtaggcat ggtttttcaa caacctaatg tttttgtaaa
    19021 aagcatttat gaaaacatct cttatgcacc aaaacttcat ggtatgatta aaaacaaaga
    19081 tgaagaagaa gctttggtgg tggattgctt gcaaaaagtg gggctttttg aagaggttaa
    19141 agataaatta aagcaaaatg ccctagctct ttcaggcgga caacaacaac gcctttgtat
    19201 cgcaagagct ttagcgatca aacctaaact tttgctttta gatgagccaa cttctgcact
    19261 tgatcctata agttcaggcg tgattgaaga gcttttgaaa gaattaagcc ataatctttc
    19321 tatgatcatg gttacgcata atatgcaaca aggcaaacgc gtagctgatt atacagcatt
    19381 ttttcaccta ggtgagctta tagaatttgg agaaagcaag gaattttttg aaaatccaaa
    19441 acaagaaaaa accaaggctt acttaagcgg tgcttttggg tgagatttat tttttggaaa
    19501 tttgatgata taattaatta aaaatttcca aaaaaaggtt taatatgatt ataaaccaaa
    19561 tttattctat agattcttgt gatgatgtag aattaaatat caaaagggga agtaaattag
    19621 aatttagatt gacttatgat gatagtaaag aaatagaagc tattgtttgt attattccag
    19681 gtggtgctga agatatgaat agttatattt atattgatga ttatttgact agaaattata
    19741 aagttgctgt tatt
//
LOCUS       DAQSLY010000019        19527 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.019, whole genome shotgun sequence.
ACCESSION   DAQSLY010000019 DAQSLY010000000
VERSION     DAQSLY010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19527
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.019"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..330)
                     /locus_tag="R2H98_000543"
     CDS             complement(<1..330)
                     /locus_tag="R2H98_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023453.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYF"
     gene            complement(317..1192)
                     /gene="era"
                     /locus_tag="R2H98_000544"
     CDS             complement(317..1192)
                     /gene="era"
                     /locus_tag="R2H98_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEE9023454.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQASHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINHTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            complement(1189..2508)
                     /gene="hslU"
                     /locus_tag="R2H98_000545"
     CDS             complement(1189..2508)
                     /gene="hslU"
                     /locus_tag="R2H98_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEE9023455.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFNDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            complement(2505..3047)
                     /gene="hslV"
                     /locus_tag="R2H98_000546"
     CDS             complement(2505..3047)
                     /gene="hslV"
                     /locus_tag="R2H98_000546"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEE9023456.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            complement(3047..3490)
                     /locus_tag="R2H98_000547"
     CDS             complement(3047..3490)
                     /locus_tag="R2H98_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEE9023457.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            complement(3503..4723)
                     /locus_tag="R2H98_000548"
     CDS             complement(3503..4723)
                     /locus_tag="R2H98_000548"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEE9023458.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVIVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            4879..5124
                     /locus_tag="R2H98_000549"
     CDS             4879..5124
                     /locus_tag="R2H98_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEE9023459.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            5121..5528
                     /gene="tsaE"
                     /locus_tag="R2H98_000550"
     CDS             5121..5528
                     /gene="tsaE"
                     /locus_tag="R2H98_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEE9023460.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSIMQRYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            5521..6249
                     /gene="lptB"
                     /locus_tag="R2H98_000551"
     CDS             5521..6249
                     /gene="lptB"
                     /locus_tag="R2H98_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEE9023461.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            6249..7499
                     /locus_tag="R2H98_000552"
     CDS             6249..7499
                     /locus_tag="R2H98_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEE9023462.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTSK
                     SQELAKKIIECLNEEGYFEHDEEFLKEYSLEEIERVRARFKFLDPTGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            7663..9087
                     /locus_tag="R2H98_000553"
     CDS             7663..9087
                     /locus_tag="R2H98_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEE9023463.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFATCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FAPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            9229..9416
                     /gene="kdpF"
                     /locus_tag="R2H98_000554"
                     /pseudo
     CDS             9229..9416
                     /gene="kdpF"
                     /locus_tag="R2H98_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            9426..11122
                     /gene="kdpA"
                     /locus_tag="R2H98_000555"
                     /pseudo
     CDS             9426..11122
                     /gene="kdpA"
                     /locus_tag="R2H98_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            11132..12160
                     /locus_tag="R2H98_000556"
                     /pseudo
     CDS             11132..12160
                     /locus_tag="R2H98_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IC family P-type ATPase"
     gene            12149..12454
                     /locus_tag="R2H98_000557"
                     /pseudo
     CDS             12149..12454
                     /locus_tag="R2H98_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
     gene            12457..14381
                     /locus_tag="R2H98_000558"
                     /pseudo
     CDS             12457..14381
                     /locus_tag="R2H98_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(14376..16349)
                     /gene="uvrB"
                     /locus_tag="R2H98_000559"
     CDS             complement(14376..16349)
                     /gene="uvrB"
                     /locus_tag="R2H98_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEE9023464.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            16503..16733
                     /locus_tag="R2H98_000560"
     CDS             16503..16733
                     /locus_tag="R2H98_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023465.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            16723..16965
                     /locus_tag="R2H98_000561"
     CDS             16723..16965
                     /locus_tag="R2H98_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023466.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            16962..17399
                     /locus_tag="R2H98_000562"
     CDS             16962..17399
                     /locus_tag="R2H98_000562"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEE9023467.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            17381..19234
                     /locus_tag="R2H98_000563"
     CDS             17381..19234
                     /locus_tag="R2H98_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEE9023468.1"
                     /translation="MQRSNIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITKYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMKKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELGITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLVKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKSAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(19244..>19527)
                     /locus_tag="R2H98_000564"
     CDS             complement(19244..>19527)
                     /locus_tag="R2H98_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEE9023469.1"
                     /translation="NDFKQLEQNNLLFSTIKHYLYDFLYQIKITIDETESKMMKEKDV
                     IDYFIKNKSLIYTFFNIFENELNHLKQTHPHIIDSWKYYKEFEKIYKDK"
BASE COUNT         6284 a         2769 c         3340 g         7134 t
ORIGIN      
        1 aaaatataaa tataaagttt gatcatataa atttaaaaca caataatcac tttcctcaat
       61 aaatctttca tcaaacaaag cttgaaaaat taaaggctca ggaaagcaaa aacgactttt
      121 tttcaatttg taaacaggcg ctaaaaaaca atgataaatt tcattatgtt taaaaaaagc
      181 tatttgatag tcaaagggtt tgcttagctt aaaatctgcg gttaaattgt taaaaagttc
      241 gtcttctttg gatattcctg ttctttgagc ataaagcaaa tctgtagatt ttataaaatt
      301 tattttattt aatgaattaa ttttcatcat ttaaaagttt ttttaaaaat tcttcatctt
      361 tttgccagtt ttttttcact gttacgaaaa gctttaaaag tacttttttt tgtgcaagtt
      421 ttgaaatttt aaagcgtgca tctttgccta ttctttttaa agttgcccct tcttttccta
      481 taagcatacc cttgtgagag tttgtatctg tgatgatatt ggcttctagg attaaaagat
      541 taggtgtgtc tttggtgtga ttgataagca cttcactact ataaggaagc tcatcgctta
      601 aattttcata aatactttca agtatgaaat ctctataaag ttctttttcg ctactcgcac
      661 ttaaaaattc aggatcataa aaatactcat gttcatcaag gtattttact atctcatcta
      721 acaagccttt tttatagctt tttttcttag aagaataagg aatgatagcc ttaaaatgtt
      781 ggctaaattt tgcatattcg ctaagttttt ttaaaagcgt agcattgtcg gttaaatcta
      841 ctttatttaa agcgatgata tgtgatgctt gtgggtttag actaaggaaa ttttcatagt
      901 cttttgtact atcaaaaaca cttgccacaa ataaaatcac atcacaatct cccatggatt
      961 taatagcact ttggacaagc agttgattaa gcgtagcacc gctttcgtga agtcctgggg
     1021 tatcgatgaa aatgatttga tttttttcat gcatcactat ggctttgatt ttacgccttg
     1081 tggcgttttg tttgtgagaa actagggcga ttttttcttc taataaggaa ttgattaaag
     1141 tactttttcc tgcattagta cgccctatga tactaacaaa gccacttttc acaaaatata
     1201 ccttgcaaga tctttatttt ctatgatatc tccgagtttt tcttctacca tttttttatc
     1261 cactacgaat tttttacccg catactcatc agcttcaaag cttagatctt caagtaattt
     1321 ttctattaca gtatgtaagc gtctagcacc tatatcttgc atttcttcat tggctcttga
     1381 agctattttt gctatttctt taatagcttc atcattaaat tcaagttcta aattttcagt
     1441 ttttaaaagc tgagagtatt gttttaaaag tgaattttta gggcgtgtta aaatttcata
     1501 aagagcttta tcatcaagac tatctaattc cactcttaaa ggaaagcgtc cctgaagttc
     1561 agggataaga tcacttggtt tgctaagatg aaaagcccct gcagcgataa aaagaatatg
     1621 atcggttttt aaagtaccta tttttgtttg tacatttgat ccctcgacta taggaagtaa
     1681 gtctctttgc accccttctt tacttggatc ttggcggttt gaatttccgc ttgaaacagc
     1741 gattttatcg atttcatcaa taaaaataat accttcattt tccgctcttt ttaaggcttc
     1801 gcttttgatg ctttcttggt ctaggatttt ttctcctgct tcatttttta aagcattttt
     1861 agcgtctttg attttcattt cttttttgac ttttttactg ccaacgccta taaccttaac
     1921 tatatcttgc attgcaccca tttcaggagg taggttagga ttggtatcga acatattttg
     1981 tgaaatttct atctctatgg tgctttcatc aagatcgcca tttcttagtt tagttctcat
     2041 tttttcaaga ctgtttttat attcttcttg tttttcatcg ctgataccct ttggtaaagg
     2101 tggcaaaagt ttttctaaaa ttttattttc tataaattca tcgattttat ctttgttttt
     2161 ttctctttgc tcatttttta ccaaatttaa agctgcattg gcaagatctc ttaccatgct
     2221 ttctacatca cgacctacaa aacctacttc agtatattta ctcgcctcga ttttgatgaa
     2281 aggaaagccc atcattttag ctaaacgcct agcgatttct gtttttccta cacctgtaga
     2341 acctatcatc aagatatttt ttggcactat atcatcttgc aactcagggc taagttgcat
     2401 tctgcggtag cgatttctta aagctatagc tatgattttt ttagcttttt tttgtcctat
     2461 aacataatca tctaaaaatt taacgatttc ttttggagtt agattcattt ctcatcctcg
     2521 attacataag ttttgatatt ggtattggta taaatgcaaa tttcacctgc gatttgaagg
     2581 cttgatttta caagttcttc ttcatctaaa tcggtatgtt ttgctaaggc tctagcagct
     2641 gaaagtgcat agtttccacc acttcctata gctgcgattt gcccatcttc aggttcgacc
     2701 acatcgcctg taccagaaag tagaaaaatg tgatttctat caagtacgag catcatggct
     2761 tcaagttttc ttaggtattt gtcttttctc cattctttag aaaagtcaat cgctgctttt
     2821 aaaagatcgc ctttagaact ttgaaggaga ttttcaaaca tatcaaaaag attaaaagca
     2881 tcagctgttg atcctgcaaa acctgctaaa actttgccat tgttgagttt tctaatcttt
     2941 acagcattgc cttttagcac cgtatttcca aagcttactt gtccatctcc gccaattacg
     3001 gatttatttt tacctttgta agctaaaatc gttgttgcgt gaaacattat tctgccttta
     3061 tatttatgtt aaatttagca tggattgcgt gtccaagttt tacgcttact tcgtggattc
     3121 ctaagctttt taaggtatca cattctaaac tttttttatc gatttctata tggctttgtt
     3181 cttttagggc gtgagcgatt tcatctttgg ttacgccacc aaacaaactt ccatttgcac
     3241 ctacgggttt tgaaatttca agagtgattt tgctaagttc ttctttgagt ttttctaaat
     3301 ttgcgatttc aaagcgtaaa ttttcagcct cttttttctt gtcgctttca tattttctta
     3361 aaacttcatt agtagctgct ttagcaaagc ctttagcgat taagaaattt tgtccgtagc
     3421 cgtcttttac ttcttttatt tctcctgctt ttccaagtgc ttttacatct ttgattaata
     3481 atactttcat tttattcctt tattaaaatt ttcttccatt ttttcctgcg atgataaaac
     3541 gcaaagcatt aagcttgata aagcctgctg cgtctttttg attatacact tcatcttctt
     3601 caaaagtaca ataagctgcg ttaaacaagc tatcgttcga actttcgcgt cctataacta
     3661 tcacattgcc tttataaagc tcgagtttta ctctgccatt ggcgtgaatt tgagactcat
     3721 cgattaaggc ttgaagcatc attctttcag gcgagaacca atagccatta taaattaaac
     3781 tcgcgtattt tggcatgagt tcatctttta agtgtgctgc ttctctatca agcgtgatgc
     3841 tttcaagcgc tctgtgtgct tttaaaagta tggtaccacc tggtgtttcg taacaaccac
     3901 ggcttttcat acctacatag cgattttcta ctatatcaag gcgtcctata ccgtgtttgc
     3961 agcctagttc gttaagtttg gttaaaagtc ctgcaggact tagtttttct ccatttatcg
     4021 ctactaaatc tcctttttgg aaatcaagtt ctataatttc actttcattt ggagcatctt
     4081 ttgggctttt actccatctc cacatatctt cttcaggtgc gtgtgcagga tcttctaaga
     4141 caagtccttc gtaagaaata tgaagtaaat ttgcgtccat agaataagga gattttcctt
     4201 ttttcttaga aatatcaata ccgtgttttt gtgcataagc aaggagtttt tcacgactgt
     4261 ttaaatccca ctcacgccat ggagcgatga tttttaaatc gggattaaaa gcaagataac
     4321 caagttcaaa acgcacttga tcatttcctt tacctgtggc accatgactt actgcatcag
     4381 cacctgtttg cagggcgatt tgtgcttgag tttttgctat aagtggtctt gctatacttg
     4441 ttcctaaaag atattctcct tcataaatcg cattggctct aaacatagga aatacataat
     4501 ctttaacaaa ttcatctctt aaatctttaa tgaaaatatt ttcttctttt atgcctaaag
     4561 aaagggcttt ttttcttgca ggttcgagtt cttcaccttg accaatatct gctgtaaaag
     4621 ttacaacttc acaattatac tcatcttgaa gccattttaa aataatgctc gtatcaagcc
     4681 ccccagaata cgctaaaact acttttttta cttcattttt cataagatat cctttgttaa
     4741 aatagatttg aaaattgtaa aattgtatcc aaatttcatt aaagaaaagt ttttacttgc
     4801 tattttctta aaaaaataaa gcaaaggcgt aagcaaattt tgttccaaaa attgattttt
     4861 tttgctaaaa ttgcttttat gagagtagat aaatttttaa atgtagttaa tatcacgaaa
     4921 agaagagcta tttctgaaga tatgtgtaaa agtggtgtag tggggattaa tggcgttatt
     4981 gttaaggcga gtaaagaggt taaggtaggt gatattatca ctttacattt tactgaatac
     5041 actcaaaaat ataaagtgct agctctacct agtacgaaaa gcattcctaa aaacgcacaa
     5101 aatgaatatg tggtaaaatt atgaaagaat ttattttagc aaaaaatgag atcaaaacga
     5161 tgcttcaaat aatgcctaaa gaaggtgttg ttttgcttca aggagatttg gctagcggaa
     5221 aaacaagctt agtgcaagct tgggttaaat ttcttggtct tgatgcaagg gtggattctc
     5281 caactttttc cattatgcaa agatatgaaa atcatgatat ttgcatttat cattatgata
     5341 tttatcaaga aggtttagaa ggacttttag cgaatggttt atttgaaaat ttttttgaaa
     5401 aaggtttgca tttggttgaa tggggcggtg aaaatttgaa aaaaacttta atgaaatttg
     5461 gaatttctac tatccagatt aaaattagca ttaaagatga caaaagaaag tatgaaattt
     5521 atgagtaaat tagaaattgt aaatttggaa aaaattatta aaaaaactaa gattatacat
     5581 ggaatttctt tggaggttaa tagcggagaa gttgtaggac ttttagggcc aaatggtgca
     5641 ggaaaaacaa caacttttta tatgatatgt ggacttattt ctccaagtag tggaaaagtt
     5701 cttttagatg gtttagatgt gacaaaagat cctttaaata aaagagctcg atcagggata
     5761 ggttatttac ctcaagaaag tagtattttt aaggatttaa gtgtagaaga taacctgctt
     5821 ttagcggctc agatttttta taaagataaa aaaattttac atgataaagt tgagcaaatg
     5881 cttgaacttt taagtataga acctattcgt ttaaggaaag gtttaagttt aagtggaggc
     5941 gaaagaaggc gttgtgagat cgctcgaagt ttgatgtgtg aacctaagtt tttgcttctt
     6001 gatgagcctt ttgcaggtgt tgatcctata gcagtagctg aaattcaaac tttaattaaa
     6061 gagcttaaaa gattaggaat tggggtttta attaccgatc ataatgtgcg tgagactttg
     6121 gctatttgtg atagagctta tgttataaga tcaggttctt tacttgctag tgggaatgct
     6181 gatgaaattg caaccaataa agacgtgaaa aagtattatt taggagcgga gtttaaactc
     6241 cttgattgat gttaaagcaa aaaatcaccc aagcgcccaa gactaaaatt tctcaaactt
     6301 tacgctcttg gttgcctatt ttacaagcaa atatagagga tttaaaagaa aatttagata
     6361 aatttgctga ggataatcct ttcttaaatg ttcaagattc gatacaaact catgataagg
     6421 gtaagaatta ttttgattca ttttataaac ataatgtaaa ttcggctttt gtggatagta
     6481 aaggacttgc caaaaaaagt gtttatgagc ttttaaatga acagattctt cctcctttgt
     6541 ttcctacaag caaatctcaa gaacttgcaa aaaaaattat agaatgctta aatgaggaag
     6601 gatattttga acacgatgaa gaatttttaa aagagtattc tttggaagaa attgagcgag
     6661 taagagcaag atttaaattt ttagatccta caggagtggg agctaaagat tataaagaag
     6721 catttttatt tgctcttgaa aatatggagt tagatgaaga tattgatgag ttttgtagaa
     6781 tgttgattat ggattttgaa aatatacaaa actataccaa agagccttta tataaagaag
     6841 cattagctgt acttaagcgc tttagcactc cccctttttt ggaatatttt gaagattctc
     6901 gtataattgt tcctgatatt tttgtttata aagaaaatgg tgaaattaaa gtaaaaatca
     6961 atgatgatta ttatcctgaa atttcaatcc aaactgatgg tttagagcat gattttttaa
     7021 gtcattacat caaagaagca aaaaatttag ttgatgcttt agcgatgaga aaagctactc
     7081 tttataaaat agggcttatg atagtagaat atcaatatga ttttttcatg ggaaaagaga
     7141 taaaacctat gacttttaag gatttagcac ttgatttaga acgcaatgct tcgactatat
     7201 caagagctgt ggcaaataaa tatttaagtt gtgaaagagg acttattccc ttgcgtgatt
     7261 tttttgcttt tgctcttgat gaagagggag agacttcaaa tgtaggtgtt aaagaatttg
     7321 tggcaaattt agtaaagaat gaagatcgaa ataaaccttt aagcgatagt aaaattttag
     7381 aattaatcaa agaagaattt aaagtcgata tagggcgaag aactattaca aaatatcgca
     7441 aacatcttaa tatagcaagc tctacagata gaaaaaaatt atatgaactt gaaggataaa
     7501 attctatcaa tctatcaaac ccattacact tttgttttat atttaaattt aatttaaata
     7561 atataaaaaa ttattgtttt atttttagaa atattattct ttaatttaaa aatgtgatac
     7621 aataataact gtttttaaat attaattttc aaaggagtta aaatggactt tttaacaagc
     7681 cttagtgagg gagggcaatt tgcaatccaa atcattatcg ttttaatttg tcttttttac
     7741 ggtgcaaaaa aaggcggcat agcgcttggt ttacttggtg gtataggtat tttaatgctt
     7801 gtatttgctt ttcatataaa gcctggaaaa ccagccatag atgttatgct tacgatttta
     7861 gcggtagtgg ttgcgagtgc aactttgcaa gcaagtggtg gtttggatgt tatgcttcaa
     7921 atagcagaaa gaattttaag acgcaatcct aagtttttga caatattagc accttttgca
     7981 acctgctttt tgactatact ttgtggaaca ggacatgtgg tttatactat tatgcctatt
     8041 atttatgata tagcgattaa aaacggtatt cgtcctgagc gtccaatggc ggcagcttct
     8101 atatcatcac aaatgggtat tattgcatct cctgtatctg tggctgttgt gagtttgact
     8161 gctttgcttt taaatgctaa tcataaatta gcaggttttg atggctatat caatcttctt
     8221 caaattacta tacctagtac gctttttggt gttttatgtg tgggaatttt ttcttggttt
     8281 agaggaaaag atttggataa agatgaagta tttcaagaaa aacttaaaga tcctgaattt
     8341 aaaaaatatg tttatgggga ttctaaaaca cttttaggtg ttaaacttcc aaaaagcaat
     8401 tgggttgcaa tgtggatttt cttaggagct attgctttag tggctttatt aggtgtattt
     8461 gatttcttgc gtccaaactg gggacaagtt gtaaaaaatg gcattcctca agtagacgct
     8521 ttaggcaatc ctaaaatgga tgttttatcc atggtttcag ttattcagat gtttatgctt
     8581 ttagcaggtt ctttgattat catctttact aaaacagatg caaagaaaat cggctctaat
     8641 gaaattttta aatcaggtat gatagctctt gttgcagttt ttggaatttc ttggatggct
     8701 gatactatgt ttgcagttca cactcctatg atgaaagcag cgcttggaga tatagtaaaa
     8761 gagcatcctt ggacttatgc tgtaatgctt cttttaattt caaaatttgt aaactctcaa
     8821 gcagcggcta tttcggcttt tgctcctttg gctttaggaa ttggtgttga acctggtgta
     8881 attgttgcct ttgcggctgc ttgttatgga tattatattt taccaactta tccaagcgat
     8941 ttggctacta tacaatttga tagatcaggt actactcaca ttggtaaatt tgttatcaat
     9001 catagtttta ttttaccagg tcttataggt gtaatcactt cttgtatagc aggatatttt
     9061 atcgctatgg cagcgggtta tctttaaaaa tttttagtag gatttttcct gctaaattct
     9121 tcatttgtct ttttatttaa tatagataaa aattataaat aaatcataaa attagtatta
     9181 atcaaaatat aagcttaaca aggataggat aaatcctatt ttgaatcaat gagaaagggc
     9241 tatcctatgg atgttatctt tgctttgctt ctgcttttag cttttggtag tttatggttg
     9301 tttatccgtt tttgtgaaat tcaaactagg acaagcggat gatattttta ctagttttaa
     9361 gcttaatact tgctctttat ttattttatg ctctattata tcctgaaaaa ttttaaagga
     9421 aaaatattct agaaatttta ataacactga ttatagcttt tatattggct ttaatttttg
     9481 gaaattatct ttataaaatt gcaagctgta aaaaaaacta tttttgattt tatttttaat
     9541 ccaattgata acttaattta taaaatttgt gcaattgata gaaaaaatat gacttggcaa
     9601 aaattattct ttgcatttaa ttgcttttaa tgccttagtg gctatttttt ctttcgtgat
     9661 tttttattta caagataaac ttttttaaat cctaattcga taaattctat gaaaggggat
     9721 ttgaatttaa atactgtaat tagttttatt acaaatacaa accttcagca ttgtagtgga
     9781 gagagtgctt taagtttgct ttcgcaaaat acaggcattt tacttgctat gtttgtttca
     9841 agtgcgagtg gatattctgc ttgtatggct ttttgtcgtg ctttatgtag tatgcaaatg
     9901 ggaaattttt atgaagattt tacgcgtatt attacgcgtt tgatgttgcc tttaagtttt
     9961 attttggctg taatttttat ctctgaaggc gtggtgtaaa attatcacgc aaattttagc
    10021 gtgcttactt tagaaaataa atttcaaagc attgccacag gtcctgttgc agctcttgag
    10081 tctataaaac atttagggac aaatgggggg ggggtggttt ttttggtgct aattcaagca
    10141 tgccttttga aaatcctgct ttacttacaa attttttgca aattttattc atgatgctta
    10201 ttcctagtgc ctgtgttgta gcttttggat tgatggttta tcatagaaaa gaaagacaag
    10261 gttttgctct tatgggaaaa gaaggggagt tatttttggt gcaatgggga ttatttttat
    10321 catttctttg cttttaattt attttagcga aaaaatgtca aatccaaatt tggattcttt
    10381 gggtttaaat gcaaatttgg gaaatttgga aggtaaagaa ataagatttg gcacagatgg
    10441 ttcgagttta tttagtgctg taactactgc ttttactaca ggaagcgtca ataatatgca
    10501 cgatagttta aatccattaa gtatcagtgc tactttgcta aatatgatgc taaatgtagc
    10561 tttcggtggc gaaggagtag ggcttatgaa tatgattatt tatgtgcttt taaccgtgtt
    10621 tatttgtgca ttaatgatag gtagaactcc agaattcttg ggtaaaaaaa tagaaagcgc
    10681 acaaatgaag cttatagctt tggtaattct tatccatcct ttattaatcc ttgttttaag
    10741 tgcattagct cttgtttttg caaaagatag tataagcaat cctagctttc atggcttggc
    10801 tcaaattttg tatgaattta gttcttcggc agcaaataat ggttcaggac ttgaaggttt
    10861 aaaagatgat aatttatttt ggaatttaag cacagctttt gctatgtttt gtgggcgtta
    10921 tttggtttta atagctcagc ttgctatagc tggatcgctt ttggctaaaa atacacaaga
    10981 aaatactgca aattctttaa aaacggataa tttaactttt atgtttgtgc ttgtttgtat
    11041 tatatatatt tttgctgcac ttactttttt tccagtgctt actttatcaa gcgttgcaga
    11101 atatttatct ttatggcatt aaggagagtc aatgtctaaa aaacaaaata aactcattat
    11161 aaaaaaaatt ttaaataatg ccataaaagg agcattttta aaatttgatc cacgctttat
    11221 ggtaaaaaat cctgttatgt ttatggtgga agttggattg attcttactt tgattttaag
    11281 tatttttcct actttgttta atggaaattc tgatgaaaga atttataaca tcttaatcac
    11341 ttttatttta tttgtaacct tgctttttgc aagttttgca gaaagtattg cagaaggaag
    11401 gggtaaagcc caagcagcta ccttaagaca aagcaaaaag gattctaaag ctagacgcat
    11461 aaaaagtgat ggcagtgaag aaatgcttaa ttctagcgag ttaaaaatag gtgatatagt
    11521 tttagttaaa gcaggtgaac ttatacctaa tgatggagaa attatagaag gtgctgcaag
    11581 tgttgatgaa tcagctatta caggtgaaag tgcacctgtt atgcgtgaag cgggcggtga
    11641 tttttcttct gttacaggtg ggactacggt tttaactgat tttttaaaga ttaaaatttt
    11701 agttggagct ggggaaagtt tttagataaa atgatcaatc ttgtagaagg tgctgcgcgt
    11761 caaaaaactc caaatgaaat tgctcttaat actcttttaa ttgtacttag tttgagtttt
    11821 ttggtggtgg ttgtaagttt atatcctttt atgcaatttt taggcgtgag tttgcctatt
    11881 tcatggttag tagcattgct tgtatgtctt attcctacaa ctataggggg gggggctttt
    11941 atcagctata ggaatagcag gtatggacag ggtaacgcgt tttaatgtga tcgcactttc
    12001 aggcaaggct gttgaaagtt gtggtgatgt tgatactatg attttagata aaacaggaac
    12061 gattactttt ggaaaccgtt tggcaaatga attttatgaa gttcaaggta taagtaaaga
    12121 agaaatgatt aaagcttgtg ttttatcctc tttaaaagag cgtgtgcaaa aagatttgca
    12181 aaaattttta gatgaaaatc cgcaaattac aaaagaacaa attcctttgg atttattaag
    12241 tgcttcagga tcaggtcttg atcctcatat cagtcttcaa gcagccctag tacaaattcc
    12301 taggataagt caatcttcaa aaatcaccaa agaagaacta gaaaaaatca ttcaagaaaa
    12361 taccgagtct aaatttttag ggatttttgg ggaagaaaag gttaatgttt tagctgttaa
    12421 tatagctatt gctaaagcca tgaaaaaaga ataaacatgc aaagacaaag tcctgaacaa
    12481 attcttaaaa aacttgaggt taaagctaag gaagaagaaa aaaacaaact tgcaaaatta
    12541 aaaattttct taggttatgc tgcaggttct ggaaaaactt atgctatgtt aagtgaagcc
    12601 agaactttaa gggataatgg agttgatgtt gttttaggct atatagagcc tcacgataga
    12661 cctgaaacaa tggctttaac acaaggtttt gaaagtatag ctaatcttga aattccttat
    12721 aaaaatatag tattaaaaga atttgattta gacgctaccc ttaagagaaa gcctgctttg
    12781 gttttagtag atgagcttgc acactaatgc taaaggcttg cgtaatgaaa agcgttttca
    12841 agatatagaa gaacttctaa aagcagggat tgatgtttat actactttaa atatacaaca
    12901 tttagaaagc ttaaatgatt tagtcgctaa tatcagtaag atagaagtta aagagcgtat
    12961 tcctgatcgt atttttgatg aggctgatca ggttgaactt gttgatattg aacctaataa
    13021 gcttttaaaa agaatgcaag atggtaaaat ttataaggaa aaacaagcta aactagcact
    13081 tgaaaatttc tttcgccaag aaagacttat agctttgcgt gagattgcct taagaagact
    13141 tgcttcaaga gtgaatttaa gagcaagtga acaaaggctt attaatgatg atttagctta
    13201 tcatactgga gagcatattt tagtttgtat taatgcttca aatgcaaagg ttattcgtgc
    13261 agctgcaaga cttgctttag cttttcatgc taaattgagt gcgctttata taaaaaatcc
    13321 caatattaaa gaagaaaaag ccttagaaga aaatatagaa ctagctaaaa gttttgatgc
    13381 tgaaatcatt agcgtatatg atgatatagc aagacaaatt gcagagtatt caagtcttag
    13441 caatgtttct aaaattattt taggtaaaaa taaaaataaa aaaaagttta aagaagagat
    13501 ttttgaagct gttgctaaaa aagcacccaa tattgattta tatattgtta atgaaaatca
    13561 aatttctact cctaaaatac gaagtaaaaa aagttttgat tttttaggtt ttttaaaaat
    13621 cacaggagtt ttgcttttag caacttttat agcttttgta tttcataaat ttaatactca
    13681 gccaagtaat atggttatga tttttatttt agcagttttt gcttcttctt ttatttctga
    13741 taataaaatt ttcgcctttt attcttcttt ggtaagtgtt ttgatttata attttttctt
    13801 tttagaacct atttttagtc ttaaagttca tgatagtgga aatattatta cttttacaac
    13861 catgtttata gttggatttt taacagctgt ttttactaga agattaaaat tgcaatctaa
    13921 agaactcact aaaagagctt atagaacagc tattttgctt gaaaatagtg aaaagttagc
    13981 aagagtgaaa agcaaacaag agctttggga acaacttgga aatcaagctt taaaattatt
    14041 aaatttacct attattattt atcctataaa taaaaacaat attttatcaa aacctttgtt
    14101 gttttttaac gatgataagc aaatgttaaa aaattgtttt agtgctgatg agattgctat
    14161 tgctcaatgg gttgcaacaa ataaagaaag agcaggtgtt tgtacaaata ccctgcctaa
    14221 tgctaatgct atgtatttac ctatagaaga tgggaaaaac taaaggggtc ataggtatag
    14281 ttttaaaaga aaaacgtccc ttacaagact ttcagtatga aattttaagt gctttactta
    14341 atgaggcagg agttagaaca agggatatat ttttattata aatcccttaa tttattaatc
    14401 tcatctctaa tagcagcagc tttttcaaac tcaagtgctt tagctgcttc aagcatttgt
    14461 tttcttaact ctttgacaag tttagctctt tcgctagcag gcattttttc tagtttttta
    14521 cctttgcgat aaatttcgcc taaatcctct tcatttttca aactctcttc aatatggcgt
    14581 ttgactgaag ttggcgtgat attgtatttt ttattataag ccatttgaag tttgcggcgt
    14641 tcattggtgg tatccatagc ttcttgcatg gattttgtga tttttttgca aaaaagcaaa
    14701 accttaccat tgacatttct agctgctctt cccatggttt ggattaaact tgtagtgctt
    14761 cttaaaaatc cttccttatc tgcatccata atggcaatga gtgaaacttc aggcaaatca
    14821 agtccttctc taagtaagtt aatgccaatt agcatatcaa aagcaccgct tcttaaacct
    14881 cttatgattt cattgcgttc tatagcatcg atgtctgagt gcatgtattt gacttttatg
    14941 ccaagctcta aataatacct tgtaagttct tcagcgagtt ttttagttag cacagtcact
    15001 aaaacccgtt cattcctttg tatgactttt ttagcctcat caaataaaat ttcaacctga
    15061 ttatcactat cttttaattc tattaaagga tcaagcagtc ctgtaggacg catgatttga
    15121 tgaaagatgt tttctttact cagttcaagt tctaaaggtg caggtgtggc tgaaacaaaa
    15181 agaaattgac aatttttatg gataaattca tcaaacatta aaggacggtt atccaaggct
    15241 gaaggcaaac gaaaaccata gtccaccaag gtttgttttc tgcttctatc tcctgcaaac
    15301 atacctctaa attgtggtaa agatacatgg ctttcatcga ctataacaag aaattttcta
    15361 tctttaatcg caaaataatc aaaaagcgta taaggagtat caccttcttt aagtcctgtt
    15421 aaatgccttg catagttttc aactccttta cacattcctg tgcttgtaag catttcaaga
    15481 tcaaattcaa ccctttgttt aaggcgttga tattctacga gtttattttc atgttcaaaa
    15541 taagcaaggc gttcgttaag ttctgctttt atgtctttta tcgcttgttt tagtcttgtt
    15601 tcacctacac taaactggct tgtaggatag agtatgaagc gttttaaatc tttgcctttt
    15661 ttattttcta aaacattgta atgatacata gcatcaagct catcgccaaa aaattcaagt
    15721 cttactactt catcttcata ataagctgga taaatatcta taatatctcc ttgaactcta
    15781 aaatctgcac gatcaaaaaa attatcattt cttttataac ccatatctac aagttttttt
    15841 aaaagttctt tttgtgaaat ttgcatacct agttcaaaga ttaaaaccat gcctatgtat
    15901 tcatttggat taccaagtcc ataatttgcc gaaacactag ctatgcaaac tacatcttca
    15961 taacttaaaa gagaagcagt agcactcagt cttaaacgct ctaagtcttc attagtagag
    16021 ctatcttttt ctatgaaaac atcagtgcgt gggatatagg cttcaggttg ataataatca
    16081 taataagata taaaatattc cacatgattt ttagaaaaaa agcctttaaa ttcgctataa
    16141 agttgtgcac aaaggctttt gttgtgactc atgataagag tgggtatatt aagttcttta
    16201 atgacatttg ccatggtaaa ggtttttcca cttcctgtaa cgcctagtaa ggtttgatat
    16261 ttgttgcctt tttttatgct ttttactatg ccttttatgg cttcttgttg atcaggacta
    16321 ggtttaaatt cgctggtaag ttctaacatt tttctacttt atttttattt ttgaaaaaat
    16381 tttaaaagaa aatgctttaa ttaaaaatta attgacaata aaaacctaaa tttaaatttt
    16441 tttctgctac aatatcaaat aatattttcc ataaattaca aattttttaa gaaggcaaaa
    16501 atatgtttga tgaaaaaata atcaatacta tgacagataa agtaaatgaa ttaattgaaa
    16561 agtataacga agtttgcgaa gccaatgagg ctttaagaaa tgagcttgta agcgttaaag
    16621 cacaaaatga agcaaaaagt aatcaaatca tgcgtttaga agaagaactt aaatctcgca
    16681 atatagaaag cgaagatatt tataagaaaa tagaggctgt tcttggcaga taatctaaaa
    16741 caagtcattg ttaatgttaa tgcaaaagat ttcattgtta agtgcagtga agaatttgca
    16801 aattttttag aagatgatat cgctttgatt tcaggcggta ctaaaaaaat agaacttaaa
    16861 cgctttgtag atgcgtttgt taaaaaaagt tatgaaaatt atattctaga aagagaactt
    16921 aagaaactaa taaaagcaat caatgaagaa ctcccgacaa aatgaacaaa gcttttactc
    16981 tgcttgagct tgtttttgtg attttgattt tgggaatttt gtcaagctta tctttatctt
    17041 ttatcaatac tacaaaagat gaggttaaaa ttttaaaatt aaaaatggac tatgaaatgc
    17101 taagctcagc tcttgcttta atgcgtagtc aaatgagact taaaaattta aattttccag
    17161 aaattttaga taatgcgcaa aacaatcaag ccaaagaaaa actcttttat tgtttaaatg
    17221 attgtgatta ttctttgctt gatacaccta tttattctga ttttaaatct tggataaaaa
    17281 taggtaaaaa tcactataga tttgcattaa acgccaaaga gatggttgaa tttatttatg
    17341 attctaaaga aggtttgtta aagtgtatag gaagttctag atgcaaagat ctaatataag
    17401 atattatgaa cttgcaattt gtggtttgta tttggataat ttaacttttc atagttttga
    17461 tgaaatcaaa cctttaacac aagtattagt ggatttaaaa actaaaaaaa accttaaagc
    17521 catcgtgctt aaagaatgtc aaaaacctga ttttaaaacc gtagaaatta aagaaattac
    17581 aaagtatttt ctaactcctt tgcagtttga attggcaaat tttattgttt attattatgc
    17641 ttcaaaactt ggttttgttt tgggattttt tgaaactagt cctaagtatg aatgtcaaaa
    17701 aatgtttttt aaagataccc ctaagctaag caatcaacaa caaaatgcct taagttttct
    17761 tcaaaaagaa aacaattcct tgctttttgc tgatacgggt agtggcaaga ctgaaattta
    17821 tatttctttg ataaaagagt gtttagaaca gggtaagcaa gctttgcttt tgatgccaga
    17881 aatcgcactt actccacaaa tgaaaaagcg tttggaagtg tattttaagg ataatttttt
    17941 cctgtggcat tctaaaattt caaagaaaaa aaagcaagaa tatttagagc gtttttgcaa
    18001 gggagaagtg cttttagtag cgggtgcaag atcggctttg tttttgcctt ttagaaattt
    18061 aggacttatt gtagtagatg aagaacatga taattcttac aaggcttcta atcagccttt
    18121 tatcaatgca agagatttag cacttttttt gggtcaaaaa aataatatta aagtggtttt
    18181 aggttctgca accccatctt taacgagttt ttacaaacaa aaaagtttta gactaaaagg
    18241 aacttttttt gagagtaaaa agcatttttt atatgatgaa aatgagcttg gtataacgcc
    18301 tatgctttta agtgaattag aaaaaagttt aaaacatcaa aaacaagcta tagtgttttt
    18361 acctacaagg gctaatttta ggcaaatcat ttgcaaggat tgtggggaaa cgataaaatg
    18421 tcctttttgt tctattgcta tgagtatgca taaaaagaaa aatgttttaa aatgtcatta
    18481 ttgtaattat acttctttaa tagagcaaaa ttgtccaagt tgcaaaggag aaatgttaga
    18541 agctagaaaa atggggactg ctgaactttt agagcttttg caaaatgctt tgcctttagt
    18601 aaaaatagca aaatttgata gcgatgaaat cacaagcgtt aaaaagctta atactatttt
    18661 aaaagacttt aatgaaaata agatcgatat acttattggc acctctatgc ttgctaaagg
    18721 gcatgattat catagtgtgg atttgagtgt gattttaggg cttgatgaat atttgttgcg
    18781 tcctagtttt agagcgagtg aagaaacttt agctttagct atgcaagttg caggcagggc
    18841 agggcgtaaa ggcgaagcaa gagtactttt gcaaacaaaa aatagagctt tttttgaaag
    18901 gtatatagag aattatgatg cttttttaaa agatgagtta gaaaatagaa aagatcttta
    18961 ccccccattt aaacgccttt taagagttct tatagaagat aaagatcaaa aaagtgcaca
    19021 aaaactttgt gaaaaatttg cttctcaatt tagaaatatc aaacaggtag aattggtagg
    19081 ctatggaatt tgtggagttg aaatgctgta tggaaaatat cgtttttatt tgttgcttag
    19141 aagtgaaaat cataaagctt tagtggcaat tgaaaattat attttgcaat ttaaaaatgc
    19201 aagtgcggat attgatccta ttgattttgt gtaagtgata tgattattta tctttgtata
    19261 ttttttcaaa ttctttataa tatttccaag aatcaataat atgaggatgt gtttgtttta
    19321 aatgatttag ttcattttca aatatattaa aaaaagtgta aataagtgat ttatttttta
    19381 taaaataatc tattacatct ttttctttca tcatttttga ttctgtttca tctatggtta
    19441 ttttaatttg atataaaaaa tcatacaaat aatgtttaat tgttgaaaat aaaagattgt
    19501 tttgttctaa ttgcttaaaa tcatttt
//
LOCUS       DAQSLY010000020        19120 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.020, whole genome shotgun sequence.
ACCESSION   DAQSLY010000020 DAQSLY010000000
VERSION     DAQSLY010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19120
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.020"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..336)
                     /gene="ysxC"
                     /locus_tag="R2H98_000565"
     CDS             complement(<1..336)
                     /gene="ysxC"
                     /locus_tag="R2H98_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein YsxC"
                     /protein_id="HEE9023470.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSI"
     gene            complement(333..794)
                     /locus_tag="R2H98_000566"
     CDS             complement(333..794)
                     /locus_tag="R2H98_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEE9023471.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(776..1291)
                     /locus_tag="R2H98_000567"
     CDS             complement(776..1291)
                     /locus_tag="R2H98_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023472.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(1282..1770)
                     /locus_tag="R2H98_000568"
     CDS             complement(1282..1770)
                     /locus_tag="R2H98_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEE9023473.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIMLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(1776..2603)
                     /locus_tag="R2H98_000569"
     CDS             complement(1776..2603)
                     /locus_tag="R2H98_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEE9023474.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFVGAFVVRE"
     gene            complement(2563..3681)
                     /locus_tag="R2H98_000570"
     CDS             complement(2563..3681)
                     /locus_tag="R2H98_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEE9023475.1"
                     /translation="MKKILLYFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVIPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(3681..4496)
                     /locus_tag="R2H98_000571"
     CDS             complement(3681..4496)
                     /locus_tag="R2H98_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEE9023476.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(4487..5731)
                     /gene="cbrR"
                     /locus_tag="R2H98_000572"
     CDS             complement(4487..5731)
                     /gene="cbrR"
                     /locus_tag="R2H98_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEE9023477.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(5837..7360)
                     /locus_tag="R2H98_000573"
     CDS             complement(5837..7360)
                     /locus_tag="R2H98_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEE9023478.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSTKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPQIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            complement(7360..8220)
                     /locus_tag="R2H98_000574"
     CDS             complement(7360..8220)
                     /locus_tag="R2H98_000574"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEE9023479.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            8311..10062
                     /gene="aspS"
                     /locus_tag="R2H98_000575"
     CDS             8311..10062
                     /gene="aspS"
                     /locus_tag="R2H98_000575"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEE9023480.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNTLEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNINETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            10059..10637
                     /locus_tag="R2H98_000576"
     CDS             10059..10637
                     /locus_tag="R2H98_000576"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEE9023481.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            10647..11165
                     /gene="ppa"
                     /locus_tag="R2H98_000577"
     CDS             10647..11165
                     /gene="ppa"
                     /locus_tag="R2H98_000577"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEE9023482.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            11207..11704
                     /gene="msrA"
                     /locus_tag="R2H98_000578"
     CDS             11207..11704
                     /gene="msrA"
                     /locus_tag="R2H98_000578"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEE9023483.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(11880..12719)
                     /locus_tag="R2H98_000579"
     CDS             complement(11880..12719)
                     /locus_tag="R2H98_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEE9023484.1"
                     /translation="MQNILSSFTQEKNVCVFANTLKISIEELEKEFLKQKLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(12748..13131)
                     /gene="ruvX"
                     /locus_tag="R2H98_000580"
     CDS             complement(12748..13131)
                     /gene="ruvX"
                     /locus_tag="R2H98_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEE9023485.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(13128..13901)
                     /locus_tag="R2H98_000581"
     CDS             complement(13128..13901)
                     /locus_tag="R2H98_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEE9023486.1"
                     /translation="MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            complement(13891..14973)
                     /locus_tag="R2H98_000582"
     CDS             complement(13891..14973)
                     /locus_tag="R2H98_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEE9023487.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELNVPYIQRDVFLDNEDDVNYVKKQLESAVKLTQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKSVDLVYLSEIYGK"
     gene            complement(14977..15999)
                     /gene="ilvC"
                     /locus_tag="R2H98_000583"
     CDS             complement(14977..15999)
                     /gene="ilvC"
                     /locus_tag="R2H98_000583"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEE9023488.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVMSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            16118..18052
                     /locus_tag="R2H98_000584"
     CDS             16118..18052
                     /locus_tag="R2H98_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEE9023489.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTVLKIEN
                     ENNNIIEVLGHIDDESIDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADTRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTHANLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            18045..19010
                     /locus_tag="R2H98_000585"
     CDS             18045..19010
                     /locus_tag="R2H98_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEE9023490.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTHASDFLSTGSLFSEKKLLEIKTSKKIPIKDLKILVELCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLRVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKINGKIDFKELLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNPKLVKKEFLISNLLKLARILKN"
BASE COUNT         6657 a         3246 c         2516 g         6701 t
ORIGIN      
        1 tatcgaggtt cttaatttta aaaattcatc taagttttga ttccatattt cttttaaatt
       61 tttagaaacc tttgcataac caaaccctgg taaatcgata aaattgatat taaatttttc
      121 ttcatttctt ttgcaagcta cttcgaaaaa atttataagc tgagtttttc caggagttgc
      181 cgaacttttg gctaaatttt tttgtttaca caaagaattg attaaagaac tttttccgac
      241 attagaacgc cccaaaaatg ctacttcact aaaatttgag ctcaaattct catcaaattt
      301 cactaaagaa gtgataaatt tagcactaat tatcatttgt ctttaagatc aaacacaaaa
      361 cgagcaggtt tttgatcctt actctccact cgataaatat tagcttttct atcgactatt
      421 attttatcac caaaaagttt ttgattgctt ccaagctcat ttatataagc atgaccatta
      481 atctcgtaag tatctttaat aacattataa ataaatttat ctccactacc tttataagtt
      541 ttacctttta aaacaatctt aaacctagca ttttgcattg cttcataacg aataggtttg
      601 cgatttttat ccgtataaat aatcaatttt tcagaattta aaatatcatc acctctaatt
      661 acttctacat ttccactaag aatactttca cccttatttt catctgagta aaaatttaaa
      721 gcttttactt caatttgagt tgcccaagtt acacttacac aagctaacaa taaaattatt
      781 tgtcttgcaa ccacgcattt actccttgga tatttaaaat tttgtttttt acatcatagt
      841 ttaaagtatt tccgttaata atacttccat tgatcagagc tttaaaatta gtatttgtat
      901 gtaaaatttt atccttaggt tggtattcta cctcttgaga aataattttg acattattag
      961 aacctatata agtaacattt ccttcaaaca aaaccttgct catatcttta ttgaaaaact
     1021 ctaaacgatt cgcactaaga ttaaaatcta aatttaaagt aataaaatca ttaaattcat
     1081 ctctatctgc atatctcacc caagaatttg ccttataata tgccttaatt gtactagcat
     1141 tactctcata agctttcaaa tttttagcct caatattttt aaaatttaaa gcattagttt
     1201 gcaaattcaa agaatatgga tcttgcaaac ttaaaatcgt aaaagtaatt gtaaaaagag
     1261 caattaaaat tccaaaaatt tttatagcca aagcttattc cattcttcct ctagatgatt
     1321 tttttctact aaaatttcta tcatctgtgc tacagcagcc ttaccacctt ttttgctaag
     1381 cattatgtct acatttaaat ctttatgacc atcttttggc ttaaaactaa gtcctacact
     1441 ttcaagcaaa gccttatcgt taaaataatc cccaatagcc gcacactgag aaaaatctaa
     1501 attaagtttt tgtaaaattt cttttgcgca agctaactta tccttaatac cttgatataa
     1561 aatttctatt tttaaatctt tagctctttt ttcaacacaa ggacaatttc tacctgtaat
     1621 aatagcaatt tttttaccaa gctttagcca agcctcgata gccgctccat cttttacatc
     1681 aaattcttta ataaattctc cattagaagt ataaataatt tttccatcag ttaaacagcc
     1741 atctacatcc aaaaaaatca attctgtcat aatttctact ctcttacaac aaatgcacct
     1801 acaaatgcac cacttgcagc aaaatctctt gcttcatctt cacttctaaa gcctgttaag
     1861 aaaacgcgat ttaagccatc tactgagctt gtgcgtatag tagagctata agttctataa
     1921 gttttatatc ttgctgctat cgtttgtgct ccagctgggt ttttaaaggc tccaatttga
     1981 accataaaat ttccaccttc ataaatttgt ccattatttg caatctctcc actatttcca
     2041 tagtttacat tagaatgcac aatattatta cccgaattac ttgatccaaa ccctataacc
     2101 tcaagcctta ctggagctgt tcctgaagca atcatatcaa tttgactagc agctcctttt
     2161 gataaatcta taatacgatt atttacaaaa ggacctctat cattcacacg aacggtaact
     2221 tgacgattgt tatttagatt ggttactttt aagatggtat tcataggtaa agttttatga
     2281 gccgcggtta aagcattttg attataggtt tcgccattag aggttttctt gccgtgaaag
     2341 cctggcccgt accaactcgc aataccatca gcagtttcgc ctactgctac aacagtagga
     2401 taataagttt taccattgat agtataaggc ttcatcgttc ctttagtccc tgaagaacta
     2461 ggactgcttt taaaatcatt tgaaggataa tacacttgag cattatccaa gctagaaaaa
     2521 aaactagtgc ctaaacaacc actaaaaaat aaagccccta gactaacggc tgacaacttt
     2581 agtgtaattg tttttatttg catttttatt ctccttgatt ggtataatta atttttgatt
     2641 aatactaaga tgattttttg ctattttatt gaattctcga atttcatcaa cacttatatt
     2701 ataatttttt gctattttat ataaagagtc accagactta acggtataag ttcttgtcat
     2761 aggtatagtt gtatcaacct tcgcaagttt ttctgcttta aaatttttat caaaaaatgc
     2821 tactttatta agtggtatat acatataata ccctttacca ggaggcgtaa aattatgttt
     2881 aaattgtgga ttatatttct taaaagttgc aagatccata tttaaatttt tagctatttc
     2941 ttttaaagat gcagaagaag gcacatcaac ttttgcaaat tcattgctta aagcataatt
     3001 cattaaagac gcatctttat ctagtaaaaa atccctatca ttagctaaaa aagcaagcgt
     3061 taaaatcttt cttataaaat ttctagtttc taaagaaaga tatttcttat cagggttcaa
     3121 taaaacactt aaatcatcac ttcctgcttg cttgatagct tgtcttagct tgccatttcc
     3181 gcaattataa gctaaaagtg ccaaatacca tttgccaaat tcttctttta actcttttaa
     3241 ataatttgta gcggcataag ttgacttgac tggatcacgc ctttcatcaa cataagcatc
     3301 gattcttaaa cccaaatttc tagctgttgg ttgcataaat tgccaaaccc ctacagcctt
     3361 ggcattagaa acgctatgag ttttcaagcc tgattcaacc atagctagat acaaaatctc
     3421 atcaggaact tcctgctggg ctaaaatttt tcttatcata ggaataactt ttgaaaaatt
     3481 ttgcatgcta tctattaaag tttgggcatg ttttgatttt atatcttgtt gagtttgcac
     3541 aaaaatcaaa tcactgataa aacttggatt aatatctaaa tttcttaaaa cattcatttg
     3601 tctttcataa aattcaggag tattaatttg tgcaaaaaga aaattaaaac atattaaaaa
     3661 atacaataaa atttttttca ttaataacct ttaaaaaata atttttcaga attgttaaaa
     3721 caaatttcta gaagttcttt tcttgataaa ttcaatactt cacacatttt gtttgctaca
     3781 aattgagtta acaaaggttc atttctttta ccgcgataag gctctggagt aagatatgga
     3841 gcatcagttt caagtagtag tctatctttt ggaattttag gtaaaatttc aactaatttc
     3901 ttagcatttt taaaagttaa aactccccca ataccaaaat aaaatccatc ttcaaaaaga
     3961 gttagtaaat gttcgcttgc attaaagcag tgtaaaactc ctcctacaag atccttagaa
     4021 tacccatgta aaatctcata agtatcatga tttgcttctc ttgagtgaat gataacaggt
     4081 tttttaaatt caatagcaag ttcaagctgt gcgataaaaa tctttttttg attttctttt
     4141 tctttttgaa tttcttcagc aagatcactt ttaaaacgga aataatcaag cccacattca
     4201 cctacagcta cacacttttc atcgcataaa tactgcctta aaattttctc atcataatta
     4261 tcaatttcat aaggatgcac ccctgctgca aaaaaaatat ttttatattt atgagcaatt
     4321 gtagctgcat aaggcaagtc ttttatatca gcaccaggta tgatgatttt ctctatacca
     4381 tttttaaaag cacgatttaa agtttcatct aaatcatctt taaatgcttc actgtctaga
     4441 tggcaatgcg tatcaacaat ccttaaacca tcttgaaaat caagatttaa gaacatactt
     4501 caactctatc cttgccgtta tcttttgctt gagacaatat tttacttgct ttatcaacca
     4561 aagaatcaat cttatctcca ctttttccaa aaaccacgcc tatagaagct gtaaaaaaga
     4621 cttcatctaa attaactaaa acaccagctt tttttatatt tactcgtata cgagaaaaga
     4681 ttttaatcgc tctttcttga gatatatttt taagcaaaat acaaattttt tctgcactat
     4741 atctacctac aagatctctt cctttagttt cattaactat ttcattggcg cagattttaa
     4801 ttacttcatc accaacttca cggccgtatt catcgttaat catttgaaga ttatctatat
     4861 ctaagaaagc aaaagcaaat tcctcgtctt ttgttgctat ttcgttaaaa taatcatcta
     4921 ttccatcgat taaagcatta taatttttaa ccccagatac aagatctaaa acattataag
     4981 tgcttaaaaa ttttttatca tccatgtaag ataaacaacg atctaagcga caattaaaac
     5041 tttctttgct taaaggctta aacaaatact cattaactcc atttttaaaa gaattcgctt
     5101 caaatgaatc attatgatcc cccaaaagaa tcacacctaa ttcatcatca ctaaaacgtt
     5161 ctcttacttg agtcaaaagc tcaaaaccgc taattactgg catattgaca tctgctataa
     5221 taagcttaac atcattatta tcatttaaat aactcattgc ttcttcgcca tgagccgcag
     5281 ctaaaacatt aaattgtctt tgagtaagta tttttttaat ttcattacgt tcaggtagct
     5341 tgctcatagc tacaatcact ttagtttttg catattgatt aagttttaca atagaactaa
     5401 taatctcatc aatgcaagtt tcactttctt taaaaatata atctaatata tctttatcca
     5461 taaatttttc tttagtagcc ttatcaccac tagccgtaag aacaatagca ggaattttct
     5521 tttctataac ataatccaca acttcaccat ttggggcatc tggcaagcat aaatccacaa
     5581 aagctaaaaa ataatcatta ttcattaact ccttagcttc agcaaaacca aaagcaatat
     5641 ctacctcata atctaaagtc atttgaattt ttttagccaa aagtttgccg agcattttat
     5701 tgtcatcaat aattaaaatt ttcttattca tagtgtgtaa aataccttta tatctaaaat
     5761 tttttattat atttgtttca aaagaaagga aatttttata gttatatatt ttaacatagc
     5821 aaaataaaaa atccgcttaa ttcttaaata aggtcttagc aaattcgatc gcttcatcac
     5881 taacaagctc tccacttacc atcctagcaa gttctttaat tctttcttct tgatcaagct
     5941 tttttacctt actttcttca ccattttttt caactaaaaa atgattatgt gccttagagg
     6001 aaagttgagg caaatgagaa atagcaaaaa tttgataaaa cttagaaagt tcctctaaaa
     6061 ccttagctat actcatagcc tcttttccgc ttaaatttgc atcaatttca tctaaaaata
     6121 atatcccttt gcctgtattt aaaatattac attctgtggc tataaaagca agtcttaagc
     6181 gatttaattc acccgaactt aaatttttta aatgagctaa attaatatct agcattatct
     6241 catctttgcc taaaattgaa attttttcat tttctttaag cgtcaaactt gcatctttca
     6301 tataaagatc tttaagataa ttatttaaac atttttctaa ttttttaagg tttttctttc
     6361 ttgtttgagt taaaatttgt gctttttctt ctaatttttg ttttaattct tgaaattttt
     6421 tttcaagttc ttttttttca aaacttaaat tttcataatg ctctagctca tatttttttt
     6481 gttttaaaac ttctaaagca ttttctatgc tttcataacg cttgataaga taggataaat
     6541 tttcaatgcg atctaaaagc gcctccacat caaaatctaa atcttccatt ttttgatttt
     6601 cgcaaatcac acgcaattca tttaaacatt cactaaaaaa actcgcatca acttcgctta
     6661 aatttaaagc ttcaataaca actttttcaa gctcaaaaat acgctctgcc ttactccaag
     6721 cttcttctaa tttatctttt ttagaaagct tttttttaag tattaaaagc tcttcatact
     6781 cgcctatttg aggattaatg cttgaaattt tttcaatttg cgctctagct agttctttta
     6841 attcttctac ttttttttct tcttctaaaa ttgcattaag ctcattagaa atttgactat
     6901 aagcattaaa atctttttta aaatcttcta aaaaggaaac aaaatttgta ttttcttgca
     6961 tctccaaggc atctaagaga tttaaaaatt tttcatttcc aaattcgtta ttttcctttg
     7021 tgcttaaata cttaataaaa gttttactta aattttgcaa actttttttc gctatgcttt
     7081 gattgttaat aaaatatttt gtgttttttt cttttaagag cttaaaaaca ttctcctctt
     7141 cactttctat accaaaactt tctaaatcca acttatcatc tacttctatt tcgacaattt
     7201 tagcctcact ttcactcaaa gaaaatgcgg ataaaattcc tttaaacaag accgattttc
     7261 cagctccact taggcctgta aaaacggtaa gccctttaga aatttcaagc tcagcctttt
     7321 taaaaccaag attttctttc ataaaaattc tatttatcat caatttcccc agtgtaattt
     7381 ttcttttaaa atttgaaaat aatccctatt ttttgggtga attaaagcca catttttatc
     7441 acttaaaccc acttttatac ttttaaaatc attcatttta taattttctt gcccatcaat
     7501 gcaaagcatg caatcctttg ccataatctc tatttcaaaa ccttttggca agacaatagg
     7561 gcgttgtgtt aaagaatgag aacaaacagg agttaagata aaagcttgag ctaaagtata
     7621 aactatgggt ccatttgcac ttaaattata agctgttgaa cccgcaggag ttgcaacaat
     7681 aagcccatct ccaaaatatt cattaaattt cttttctttt ctaaaaactt ctatatgagc
     7741 catagaagct tgattgtttt tactgataac cacatcgtta aaagctaatt tttctaaaat
     7801 ttttccttgc ttatcttcta aaaaaacact taacaaataa ggcttttcta ttctaaattc
     7861 tccttgaaaa aaagcttgaa aaaaattttc agcttcatca actttaaaat ctgttaaaaa
     7921 acctaaatgt ccagcatgaa ttcctaaaac tgctttatca tattcacaag ctttacgaca
     7981 taaagaaatc aaagttccat ctccacctaa agaaataaca aaatcagata ttttaaacaa
     8041 atcatccaat ccatactttg gcaaatctaa aatttcagaa ctttctttaa acaatacaag
     8101 ttcaacttta tatatagata aaatcgattg aagttttaaa atttccttat ctaaactcac
     8161 attgggtcgc gtaacaagtc caattttttt aatattttta taatctattt tattttgcat
     8221 aaaaaattat atcaaatctt agcaaagcaa aagaataaaa atactataat tttgctcatt
     8281 atcttaaaaa atctttttca aggaataaat ttgcgaagtc attataatac agacttggga
     8341 atttcccatg ttggtcaaag cgttaaactt tgcggttggg taaatagcta ccgcgatcat
     8401 ggtggagtta tttttataga tttaagagat agaagcggta ttatccaact tgtttgcgat
     8461 ccaaatgata gtaaagaagc tcatgaaatc gcttccaatg caagaaatga atttgtactt
     8521 attacagaag gtactattcg tccgcgtggc gaaggacttg taaatcctaa gttaaaaaca
     8581 ggagaaatcg aagtagttgt ttctaaactt accatagaaa atgaaagtgc cgtacctcct
     8641 tttgctatcg ctgatgaaag tgtaaatgaa gaattacgct taaaatatcg ctttttagat
     8701 ttaagaaatc ctaaacttta tgaaaatttt gccttgcgtt ctaaagcttg tatagcagct
     8761 agaaattctt tggcaaatat gggattttta gaagttgaaa cccctattct taccaaagct
     8821 actcccgaag gcgcaagaga ttatctcgtg ccttctcgtg tgcatcaggg tgaattttat
     8881 gctcttccac aaagccctca gcttttcaaa caacttttaa tgtgtagcgg ttttgatcgt
     8941 tattttcaaa ttgcaaaatg ttttagagat gaagatttaa gagctgatcg ccaacctgaa
     9001 ttcacacaaa ttgatgttga aatgagcttt tgcgaacaaa aagatgtgat caaggtagct
     9061 gaaacttttt taaaagatat tttcaaagct tgcggcaaag aaattcaaac cccttttaga
     9121 caaatgcaat acaaagacgc tatggaaaat tatggctctg ataagccgga tttaagattt
     9181 gatcttaaat ttattgatgt gattgatatt ttcactaagt caaataatga aatttttgca
     9241 aatattgcca aagatacaaa gaaaaatcgc atcaaagcca tacgcgttcc aaaaggcgat
     9301 actatttttt caaaaagaca aatgcaaaga tttgaagaat ttgtgcgtaa atttggcgcc
     9361 caaggcttag ctttcataca agttaaaaaa gatgggctta aaggtccact ttgtaaattc
     9421 tttagcgaag aagatttaaa tgagctaagc aaacgctgtg agcttgaagt aggagatgtg
     9481 gtatttttcg gtgcaggagc taaaaaaacc gtgcttgatt atatgggaag atttagaatt
     9541 ttcttagcca acgagttaaa acttatagat ccaaatacct tggaattctt atgggttgtt
     9601 gattttccta tgtttgagca aaatgatgac ggaagttatt ctgcgatgca ccatcctttt
     9661 accatgccaa aaaatattaa tgagactgat ttagaagaaa tttcatctat tgcttatgat
     9721 gtagtgttaa atggcgttga gctaggtgga ggtagtataa gaatccataa aaatgatatt
     9781 caacaaaaag tatttaaact tttaaatatc gatgaagaac aacaaaaaga aaaatttggc
     9841 ttcttgcttg atgctttaag ttttggtgct ccaccacatg gaggtatcgc tataggactt
     9901 gatagactca tcatgctagt tacaggagca aacaacataa gagaggttat agcctttcca
     9961 aaaacccaaa gagcgcaatg cttaatgaca gatgcaccat cgcctgctag caatgaagca
    10021 atgagagaat taggaatcaa attaagggag aatataaaat gaaagaattg tttttaatca
    10081 taggtgcacc aggtagtgga aaaactaccg atgctagttt aatcgcacaa gcagatgcga
    10141 caaatattac acactattca acaggagatc ttttaagagc tgaagtagca agtgggagcg
    10201 agcttggaaa aactatagat agttttatct ccaaaggcaa tcttgttcct ttagatgttg
    10261 ttataaatac tatagtttgt gctctaaaag ctgctccaac taaaactatc atcatcgatg
    10321 gctatccaag aagcgtagag caaatgatgg aatttgataa ggttttaagt gagcaaaatg
    10381 aaatttgtct taaaggcgtc atagaagtaa gagtaagcga agaagttgct aaagaaagag
    10441 ttttaggcag aaatcgtggc gcagatgata atgaagaagt gttttacaat agaatgaaag
    10501 tttatacaga acctttaaat gaaattttag atttttatca aaagaaaaaa cttcatttta
    10561 ttatcgatgg agagcgcgct atcgaaccta tcgttgcaga catgaaagaa ctgattaaaa
    10621 aaattcaaag tatataagga gaaaaaatga atttaaacaa aatcaaaatc ggagatattc
    10681 caaataaaat caatgccgta attgaaattc catatggctc aaatataaaa tacgaaatcg
    10741 ataaagatag cggtgctatc atggtagatc gcgttatggc tagcgcgatg ttttacccag
    10801 caaactatgg ttttattgct aatactttgg ctgatgatgg tgatcctgta gatattttag
    10861 tgcttaatga atatcctatc caagctggag ctgtgattcc ttgccgctta atcggtgttt
    10921 taatcatgga agatgaaagt ggaatggacg aaaaacttct tgcagttcca aattcaaaaa
    10981 tagatgcgag atatgataat ataaaaactt atacagactt accacaggca actttgaata
    11041 aaatcaaaaa cttctttgaa acttataaaa ttttagaacc aaataaatgg gttaaagtgc
    11101 aagacttcaa agatgaaaaa gccgcaattg aaattttaga aaaagcaatc aaaaactata
    11161 aataagctta gccctttcaa agggctaagc ttaaggaaaa ctcgcaatga aaaatatcat
    11221 tttaggtggt ggttgttttt ggtgtattga agccgtattt gaacgtctaa aaggtgtaat
    11281 caatactgaa gttggatata gcggaggaaa accaaatcct agctatgaaa gcgtgtgtaa
    11341 tggtgatggt aacatagaag ttgtcaaaat aaattacgat gaaaaacaaa tctctcttct
    11401 tgaaatccta atactctttt ttaaaattca tgatccaaca agtatagata aacaaggtga
    11461 agatattggc atacaatatc gctcaataat attttacgaa aatgaagaag ataaaatttt
    11521 agctcaaaat ttcattgaag aacagcaaaa aatatttagt aaaaaaatag ttactaaaat
    11581 ttcaagattg caaacttact ataaagctga aaactatcat caacattatt ttataaataa
    11641 tcccgatcaa ggatattgtc aagctgtaat agctccaaaa ctgcaaaaaa tacaatcaga
    11701 ctaatttcat ctttttaagg ttaaaaaaaa ttcaacttta ttcacagcct tttcacgctg
    11761 tgattttctt ttcaaagtac ttaaaaatag aactttaagc tttaaaataa agaaaaaatt
    11821 atttattgtt ttttaagttt ttttatgaat ttgtatttaa atgtgaataa ttttattaat
    11881 taacataatt tcctaagttt agctatgaaa aatccatcat agtctaagct tggtaaaatc
    11941 cgtctgcatt ttgaaatttc agcaaattct tcactttgcc ctgctttagc ctcaacattt
    12001 tccaaatcaa tatctaaaag ctctaattta aactcacttt ttaaagcatt ctctatcact
    12061 tcttcatttt cttctttggt aaaggtgcaa gtactatata caagctctcc acctattttt
    12121 aatgccttta aagcagaatg tagaagtttt ttttgagttt ttgcaatatt tttgatttct
    12181 ttataacttt tttccaaatc aaaacctatt ttagcaaaag tcgaacaagg tgcatcaagt
    12241 aagattttat caaattttaa aggacataaa ttgcctatat ttttaccatc tttcataaaa
    12301 actttagcat tcacgccgta atttttaaga tttttttgca aaataaaaaa tctatcccta
    12361 ctcatctcat tgcaagctaa ataacctgta ttttgcataa aatttgcaag attgatactt
    12421 ttaccacccg gagctgcaca catatcaaga accctttgcc ctgctttgac ttctaaattt
    12481 aaagcacaca aataagaaga ataattttgt atataaaagt gcgcctcatt aaaagctttc
    12541 atagaactta agatagcctt atctttggca tcaaacaaat aacaataagc attgatcttt
    12601 ttaaatttta atttttgttt taaaaattct ttttctaatt cttcaatgct aatttttaaa
    12661 gtatttgcaa atacacaaac atttttttct tgagtaaaag aagataaaat attttgcatt
    12721 tcatctttgg tataaagttt ttctattcta gagagcaaaa taatccttta tcatgataaa
    12781 agcggataag gagtctaatt taccatcttt tttgcgtgta ttggctacgc cgtatcctaa
    12841 agcttctttg cttgttccgc tttcatctac aaagcaaatt tctttatcaa attcaagcaa
    12901 agaaacaaaa tgcttaatgc gtcttgtcat ttcttcttca cttgatccac ccttaggaat
    12961 gcctacaatg agtaaagaaa tctcatgtat tttaagtaaa tttttgattt cattagcggc
    13021 ttgattgcga ttttttctta aaactgcatc taaaggcaaa gcgatctttt tatctatgca
    13081 aagcgctaca cctatgcgtt ttaaacctac atctaaagcc aaagctctca tgctaaaacc
    13141 cttataaaaa gcccttctat ggaaattttt ccctcaagtt catattcata aactttttgt
    13201 ccataaattt ttaaagcctc atcaacactc acaccttttt tacaaaactc taaaaactca
    13261 tcttgattta tatctatact tgcaaactca cttacaaatt ctttaaaatc acaaattaac
    13321 tttgctttat tttcctttaa aagaaaatta gttcctgtgc tttcttctag tctttgtggt
    13381 aaaacatata aaggtttatt gagttctaaa gcaagttttg cactctgcat agaaccactt
    13441 tttatatctg cttgtgcaac cacaacggcc ttacttaaag caataaccaa acgatttctt
    13501 agtaaaaaat cataattttt tggcaaataa tcatcttcgt attcacttaa agctaaagca
    13561 ttttcataaa tttgtttaat gattttttca ttagttcttg gataaatttg atctaaacca
    13621 ttggcaaaaa tacctatagt atttggcata gctgccatac ttgcggtgat atccacaccc
    13681 aaagcaccgc cacttaccac gcaaagatga gcatttttaa gcatactcgc taaggaaaaa
    13741 acacaatttt tcgtataaac actcatacgc cttgaaccta taatagcgat tttatcttgt
    13801 tttaataaag ataaatttcc tttatagtgt aattttttag gaggcttttt taaatcttga
    13861 aaaagctcta aaaattcatc aggcaaaatt tcacttgcca taaatttcac tcaaatacac
    13921 aagatcaacg ctttttaaca aatctttact ttgctctaaa gctttaaaag tattttttct
    13981 aggatgtcct atggctataa caaaaccttt tttttgtgta agttttaccg cactttcaag
    14041 ttgtttttta acataattaa catcatcttc attatccaaa aacacatctc tttgtatata
    14101 aggaacattt aactctttgg ctattttatt tgctttagaa tttcctatag ttttagaatc
    14161 tacaaaaaat atattttgat tttttaaaac ctcataaagc tttctcatag cttcttcatt
    14221 gcttgtaaat aaacttcccg tgtgattatt gatgtatctt aaatccttaa aatctttttt
    14281 aatttgcttg atttttttaa aaattctttc tttgctatca tttggattta aagtatcaag
    14341 ctcaggttta ttgtaattaa tcgctgctaa aggtaaatgc accatataaa aatcaaattt
    14401 taaagcaagt tttggcgttt cgctatggtt tttatctggc ggaaaaaaag aaggatttaa
    14461 ctttaaattt aaagctttta aacctctaac ctgacttgca tttgccatat catcgataat
    14521 aatagcaagt tttggttttt tagaaatttt atttaaatga atatcttcat taaaagttaa
    14581 attttgatct tgggttaaat ttgtatcttt tagaataaaa ttttgttcta aactctgatt
    14641 ttgctctaaa cttaaattct gctccacact gcttaaattt tgctcattta aacttgtgtt
    14701 taaatcatca atttcttgaa ttttttgctc taaaatactt acagatttat tattatcaaa
    14761 ctcattctct tgaaaaatac caatttcata atgatcttta tttaatgaaa ttaaatcttc
    14821 ttgcttatca ataaaataat ccggcttaac agaagaaaca tcttgggaat tttgatattt
    14881 tactaaaatt cccaaagcta aagctatgca aagtaaaaaa agtatagcta tgattaaata
    14941 acgctgaatt tgaactaatt ttttctttga caatgtttag ttcttatctt tatctactaa
    15001 ttttttagca ctgatccaag gcatcatagc acgcaaattg cgtcctgttt tttctatcaa
    15061 agaatcattc atatttttgc gttctgcatg cattctagca aaacctgcac ggcgttctaa
    15121 gataaaatct tttgcaaaaa caccattttg tatatctttt aaaacacctt tcatcgcttt
    15181 tttagtctct tcagtgataa tctttggccc tgtgatgtaa tcgccgtatt ctgcagtatt
    15241 tgaaatagaa taacgcatat ctgcaatacc accttgataa atcaaatcca caatgagttt
    15301 catttcatgc aaacactcaa aataagccat ttcaggttca taacctgctt caaccaaagt
    15361 ttcaaaacct gcttgaatca aagcactaag tccaccacaa agcacagctt gctcaccaaa
    15421 aagatctgtt tctgtttcgg ctttaaaggt tgtttctata atacctgtac gtccaccccc
    15481 aatcgcgctt gcataactta aagctaaatt tttagcattt ttactttcat cttgatgaat
    15541 agctatcaag caaggagttc caccacctaa agtaaattca tttcttactg tatgtcctgg
    15601 tgctttaggt gctatcatga taacatctac accttttgga acaacaattt gaccatagtg
    15661 gatattaaaa ccgtgtgcaa aagctatagc cttaccttca cttaaatttg gttttatttc
    15721 gacattaaaa atatctgctt gaatttcatc aggagctaaa atcataatca catccgctat
    15781 cttagaagct tcacttacac tcattacttc aaaaccagca ttttttgctt taacagcact
    15841 tacactacct tcgcgaagtc cgatagttac atttacgcca ttatccctta aattcatcgc
    15901 atgagcgtgt ccttgagagc caaaacctat aattgctact ttttttgatt tgattaaatt
    15961 taaatcacaa tctttatcat aatatactgt aatagccata ttcactcctt aaaaattcaa
    16021 aaattaaagg tattattata acaattaaag tataaatttc atattttttt tataaacttt
    16081 atgtaagaat tttacaaaaa atcataaagt attaaaagtg aaagaatttt taaacagtct
    16141 tagttatggc attagctctc acgaagtaag caatgaattt aaacaaattt taagagagct
    16201 tttagccaat catatcatta aagaacacaa aaacaaatac tatcttaaca atggttttgc
    16261 ctttggggtg cttgatattt cgagcaaagg tacaggtttt ttacaatgct ttgatgaaag
    16321 ttttaaaaaa gatcttttga tagaaaacaa aaacctaaaa ggtgcaaact ataaagatat
    16381 agttgcagta aaacttctac ctttaaagaa aaaacgcccc agtgcaaagg tgattttggt
    16441 tctaaaaaga gccaatgaaa cctctttagt gatcaccaaa aggtatggcg aagccgtact
    16501 tggaatgaat atcaaaacag gattaagcac cgccttaaaa gcttctcaaa aatccttaaa
    16561 agcactacct ttaggaacag ttttaaaaat agaaaatgaa aataacaata tcatagaagt
    16621 tttagggcat attgatgatg aaagtataga tgaaaaaatc tctttagccc ttttcaataa
    16681 aaacaacgaa tttagcgacg cttgtatcaa agaagcccta gcaaacggcg atagtgttga
    16741 tgcgagtatg tatgaaaatc gcatggattt aagagccttg cctttttgca ctatagatcc
    16801 tatacatgca aaagattttg atgatgcgat ttattttgac actcaaaaac gagaaattta
    16861 tgtagctatt gctgatgtta gcgaatatgt ttatgcttat agtgctatag ataaagaagc
    16921 aagaaatcgt ggattttcta tttattttcc gcacattgct atacctatgt taccgcatcc
    16981 tttaagtgaa aatatctgtt ctttaaaacc tcatttagat cgcttagcgt attgttttaa
    17041 aatcacactc gatcatgaaa ataaagtcat caaagaagaa ctttttgaag gtattatcaa
    17101 ctcaaaacgc cgttttaatt acgatgaagt tgatgaaatt ttggtacaaa aacctgattt
    17161 aaaagaactt tcatggcttt atgagctttt tgaaatcaca aaaaatttac gcaaaatgcg
    17221 tcttaaaaat gcctttgaat ttcgcaccga agaattaaga atgaatttag atgaaaattt
    17281 aagtctaaaa agcacagttt ttgaaaaaga cacgccttcg cataatttga tcgaagattg
    17341 tatgctttta gccaataaag ccgcagcaaa actcatagat ataggcgttt ttagaaatca
    17401 cttaagtgct gatacaagaa aaatcgataa gcttttaaat gaattacgcg aactcggaat
    17461 cgatgtaaat tttaaaccca atcttcctga gctcatacgc gacatacaag ctttagctga
    17521 tgaattaaat ttaagagcag aagtagataa actcatcatc aaagcacaaa aaaaagcgga
    17581 atactctagc gtaaatgcgg ggcattttgg cttaggtttt gataaatact cacattttac
    17641 aagccctata agaaggtatt ctgatcttat tttacacaga cttttaaaag ccaaacaaaa
    17701 aaacgatgaa aaacttttta attatctact tttaaacata gaaagcactt gcgagaatct
    17761 tagcacactt gaaagagagg cggataaggt tgcttttgat tttatggata gaaaatttgc
    17821 tagatgggca gctaaaaata taggcaaaaa atttaaagct ttagttgtgc aaaatgacgg
    17881 agtttgcata gctaaactag atgatgaaat caaaggagcg gatataatcc tttatgatac
    17941 gcatgcgaat ttactagaaa atgttgaagt gcaaatcatg gaagcggata tagttatggc
    18001 aaaaatttat gctaaaatca cccaaagact tataaaggaa gaaaatgtat agaaaagagc
    18061 tccaaaccct gctttctaaa gattcaatac ctaatttttt ctttctttat ggagcagata
    18121 attttcaaag cgaactttat gctgaattta taaaagaaaa atataagccc gatgaaactt
    18181 taaaactttt ttttgaagaa tacaacttca ctcatgcaag tgatttttta agcacaggat
    18241 cgctttttag cgaaaaaaaa ttactagaaa ttaaaacttc taaaaaaatt ccaataaaag
    18301 atcttaaaat tttagtcgaa ctttgtaaaa acaatgcgga caatttcttt cttttagagc
    18361 tttatgatga aagttctaaa caaagcgaca tagaaaaaat tttctctcct cattttgtaa
    18421 gattttttaa agctaacgga gctaaagaag gcgtggagct tttaagcata aaagcaaaac
    18481 aactaagggt tgaaatcact caaaatgctt tatttactct ttttacaagt tttgatgaaa
    18541 acttgtatct tgctgcgagt gagcttaata aatttagtgg tttaagagta gatgaaaaaa
    18601 ccatagaaca atactgctat agtttaaata caggaagttt tgaaagcttt tttgataaaa
    18661 ttttaaaaaa acaagacttt aaaagcgaac ttgaaaaaat tttagataat tttaatgaaa
    18721 ttgctttaat caactcttta tataactctt tttatcgttt atttaaaatt gcactttatg
    18781 ctaaaatcaa tggtaaaatt gattttaaag agcttttagg ctacactcca ccccctcaag
    18841 tgggacaaaa tttaagctct caagccttta gtttaaaaat cgaacaatat aaagaaattt
    18901 tcactctttt gcttaaaagc gaatacgaac ttaaaaccaa tcctaaactc gtaaaaaaag
    18961 aatttttgat ttcaaattta cttaaacttg caaggatttt aaaaaattaa tttttactct
    19021 tcaatcctct tcacttcttt ttaatcgtat taaaataatt taaaatgatt gtattgttat
    19081 aatctttgtt gagtttttaa aatactttaa aagaatgatt
//
LOCUS       DAQSLY010000021        17871 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.021, whole genome shotgun sequence.
ACCESSION   DAQSLY010000021 DAQSLY010000000
VERSION     DAQSLY010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17871
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.021"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..124
                     /locus_tag="R2H98_000586"
     CDS             <1..124
                     /locus_tag="R2H98_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023491.1"
                     /translation="KYVIINYQNIFPDTDLSKKLGISRKSLWEKRKKYEISKKK"
     gene            102..1262
                     /locus_tag="R2H98_000587"
     CDS             102..1262
                     /locus_tag="R2H98_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEE9023492.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLILDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1267..1767
                     /locus_tag="R2H98_000588"
     CDS             1267..1767
                     /locus_tag="R2H98_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEE9023493.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1846..2109
                     /gene="rpsT"
                     /locus_tag="R2H98_000589"
     CDS             1846..2109
                     /gene="rpsT"
                     /locus_tag="R2H98_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEE9023494.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2128..3195
                     /gene="prfA"
                     /locus_tag="R2H98_000590"
     CDS             2128..3195
                     /gene="prfA"
                     /locus_tag="R2H98_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEE9023495.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGAGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3209..3952)
                     /locus_tag="R2H98_000591"
     CDS             complement(3209..3952)
                     /locus_tag="R2H98_000591"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEE9023496.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNVNGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKANPNNIEIMFLEDESKAAS
                     VILRKRLRYRVDASFLERDERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNRHKH"
     gene            4145..6301
                     /locus_tag="R2H98_000592"
     CDS             4145..6301
                     /locus_tag="R2H98_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEE9023497.1"
                     /translation="MHPNKKFYKLFKLSLFALLLITNLNAQESNEAINLQKVVVSATG
                     FEQDADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKS
                     NIAVKVMIDGRAINVLDNSHGVTPLNSINLDNVERIEIIPGGGSVLYGNGTRGGVINI
                     ITKKQKSDAFAINLKSSTYNHGGLGGNLGINGSKQINENLAFSFDIQSFNLDGYQKGY
                     NEKGYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKTQAQSNPTQKGNSDNITQ
                     INRPEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYRGMSLPVYQNGSGFED
                     TLTGISLKTKLNYANNSYFIFGYEFANHDAKRKSLVYYSAAPIINYHRMTTLMDMTKQ
                     SHSIFALNSHNFNEFFTLSGGARYEFSTYNTNRSYRNEMSMNGRPPSSNPMITDSTTL
                     FDTDKNTNNFAFEITPNFKYSDTGNLYLKYERGFVSPTPAQFVNRNNNTSNGIPPYYS
                     SNLKAEIFDTFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNID
                     QTRRLGVELSLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYA
                     WNKNFSNFIDLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAG
                     IRNLFDKRYYTYQDSINDQYLVGNGRNYYVEFKYAF"
     gene            6276..7262
                     /locus_tag="R2H98_000593"
     CDS             6276..7262
                     /locus_tag="R2H98_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEE9023498.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYNNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            7262..8038
                     /locus_tag="R2H98_000594"
     CDS             7262..8038
                     /locus_tag="R2H98_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023499.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLNPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKRVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            8035..8841
                     /locus_tag="R2H98_000595"
     CDS             8035..8841
                     /locus_tag="R2H98_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEE9023500.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINSKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(8838..9695)
                     /locus_tag="R2H98_000596"
     CDS             complement(8838..9695)
                     /locus_tag="R2H98_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEE9023501.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSNISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLYQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            9861..11119
                     /locus_tag="R2H98_000597"
                     /pseudo
     CDS             9861..11119
                     /locus_tag="R2H98_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(11105..12124)
                     /gene="mutY"
                     /locus_tag="R2H98_000598"
     CDS             complement(11105..12124)
                     /gene="mutY"
                     /locus_tag="R2H98_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEE9023502.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCGICPLYDF
                     CQGKFNTEFYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMSFVGEFKHGYTKYKLNIKVYHQILNNENKNYEFQTLKELESTALSALSLKAL
                     KLIKL"
     gene            12197..12949
                     /locus_tag="R2H98_000599"
     CDS             12197..12949
                     /locus_tag="R2H98_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023503.1"
                     /translation="MLAFFKGLSVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNNLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISEKEQILNAKALFICK"
     gene            13021..13095
                     /locus_tag="R2H98_000600"
     tRNA            13021..13095
                     /locus_tag="R2H98_000600"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13053..13055,aa:Gly,seq:gcc)
     gene            13105..13193
                     /locus_tag="R2H98_000601"
     tRNA            13105..13193
                     /locus_tag="R2H98_000601"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13139..13141,aa:Leu,seq:taa)
     gene            13212..13285
                     /locus_tag="R2H98_000602"
     tRNA            13212..13285
                     /locus_tag="R2H98_000602"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13244..13246,aa:Cys,seq:gca)
     gene            13307..13394
                     /locus_tag="R2H98_000603"
     tRNA            13307..13394
                     /locus_tag="R2H98_000603"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13341..13343,aa:Ser,seq:tga)
     gene            13600..14610
                     /gene="ribD"
                     /locus_tag="R2H98_000604"
     CDS             13600..14610
                     /gene="ribD"
                     /locus_tag="R2H98_000604"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEE9023504.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            14591..15112
                     /locus_tag="R2H98_000605"
     CDS             14591..15112
                     /locus_tag="R2H98_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023505.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSLRMKKYTKV"
     gene            complement(15120..16484)
                     /locus_tag="R2H98_000606"
     CDS             complement(15120..16484)
                     /locus_tag="R2H98_000606"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEE9023506.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGVNAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(16499..17749)
                     /locus_tag="R2H98_000607"
     CDS             complement(16499..17749)
                     /locus_tag="R2H98_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEE9023507.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
BASE COUNT         6389 a         2821 c         2667 g         5994 t
ORIGIN      
        1 aaaatatgtt attataaatt accaaaatat atttcctgat actgatcttt caaaaaaatt
       61 aggcatttca cgtaaatctt tatgggaaaa aaggaagaaa tatgaaatca gcaagaaaaa
      121 ataaaaacat taccatagat caaaatgaat ttggcatctt gtcacttatt aaagaaggtt
      181 tgctaggtac ttgcactcat ttaatgaatg aaaaagaagt caatgaaatc attaaatcag
      241 gaaaatttaa aggagaaagt tttccctatc ccttaagctt tgcaccaaaa aatgctgaag
      301 aagcactaaa tgatataaaa tctggcgata gaatcgatct catactagat gaaaaagtag
      361 taggacatat agattttaaa agccaattta aaaataataa aaatttttct gatattttca
      421 gtcctaacac ttgctcttta gaagacatgg gaacaacttg cataagtgga aaaatagaaa
      481 tttataattc tcaaattgaa aaaataaaag aaaattttca acaaatcaaa aacaatctta
      541 atgcacaaaa aattactgct atagtttcaa gttttgatcc tttgcatcgt gcccatgaaa
      601 gaatgtttcg ttggactatt gataaagcag atttagttgt aatttttctt gtagaatctt
      661 ttgatgtaaa tgggtttgaa ttcgaactta aagaagcata tttgaaaaaa tttattcaaa
      721 actatcttcc accggataga attttcattt ttccattaaa aaatattaat atttttcacg
      781 ctcatttaaa tcctggctta gaaagtatta tcgcaaaaag tctaggttgt accaaactag
      841 tagtaggaca aaatcataca ggacttggaa tgttttatga cgataaccaa ccaaaaacca
      901 tacttgatga tttttccaag gactatggca tagaagtgat cgttttgcct gaatttgtat
      961 tttgcgatca atgtcgcatg attgttagca caagatcttg ccctcatggt tgtcatcacc
     1021 atttgcacta taattctcag tctttaaaag atttactaag agcgggtatc attcctccag
     1081 caattttcat gcgcaaggaa gtatctagtg ttattttaac ttctcttttt ccaaatagat
     1141 taaaaaatat gcaaaaaatt tataatgagc tttttccaac tgatggaatt ttagaataca
     1201 aaaatgatga agaattttat caaaaacttt tagaaattca tcaaatgtct tatatggtgt
     1261 aataaaatgc aaaaattatt tttaactttt ttttattcag gttctgtaaa aaaggcaagt
     1321 gggacttttg gtactatcgc tgctttaata cctgcttttt ttatacttaa atatctcggg
     1381 attaatactt tgtttttact aagcatttta atttttgttg caagtattcg tgttatagat
     1441 gattatgaaa aaaaaacagg aattcacgat gacaaacaca tagttatcga tgaggttgct
     1501 ggagtttttc ttgcttgtgc tattgcagca agtgttgaaa actcgatagt caattttatt
     1561 ttggcttttg ttttattcag actctttgac attacaaaac cttctattat tggtaagata
     1621 gataaaaaag tcaaaggcgg actaggtgta atgcttgatg atatgttagc aggattgttt
     1681 gctggacttt taagtgcggt aatttatgga tttttactta aatttaattt agttttttgg
     1741 gatataaatt taaaagactt attttgaaat tttgcttaaa ttaattaaat tttaaatttt
     1801 attcttatat aatttagtct ttaatttcaa aaaaggaaaa tataaatggc aaaccataaa
     1861 tctgctgaaa aaagagcaag acaaactatt aaaaaaacag aaagaaatag attctataga
     1921 acaagactta aaaatataac taaagccgta agagaagctg cagcaaatgg agataaaaat
     1981 gctgctaatg aagctttaaa agtagctaat aaaagcattc atgctatggt aagtcgcggt
     2041 ttcattaaaa aacaaactgc ttctcgccgt gtaagccgct tagccctttt agtaaataaa
     2101 atcgcataat tttctatata gtttttaatg ttagctagca aactagatcc ttttttaaaa
     2161 cgctttgaag agttaaattc tcttcttagc agttctgata taatcaacga tatcagtaaa
     2221 atgactacac tctctaaaga acaaaaaaat ttagaaccta tcgttttaaa agctaaagag
     2281 tatttaaaaa ctttagacaa tatagaagaa aataaagctt tgctaaacga tccagaactt
     2341 ggggaacttg cgaaagaaga actaaaaact ttagaagaat taaaaccaaa gcttgaagaa
     2401 gagattaaaa ttttacttct tcctaaggat cccaatgatg aaagaaatat ttttcttgaa
     2461 attcgtgcag gcgcaggtgg cgatgaggca tctttatttg taggagatct tgtaaaagct
     2521 tatgcaagat atgctgaaaa tcgtggctat aaacttgaga ttgtaagttc tagtgaagga
     2581 agtgtaggtg gatttaaaga aatcatcatg cttgttaaag gaacaggagc ttattcaaga
     2641 cttaaatatg aaggtggaac gcaccgtgtt caaagagttc ctcaaacaga atcccaagga
     2701 cgcgtgcata cttctgctat caccgtggca gtaatgccag aagttgatga tatagaaatc
     2761 gaaatcaatc caaacgatct taaagttgat gttatgcgat cttcaggaca tggtggacaa
     2821 agtgtaaata ctactgattc agctgttcgt atcactcata tccctacagg tatagttgta
     2881 gtcaatcaag atggaaaaag ccaacacaaa aataaagaaa gtgcgatgaa agtcctaaaa
     2941 gcaaggcttt atgaaatgca agagagtgaa agactagcaa aagaaagtga agcaagaaaa
     3001 tcacaagtag gaagcggaga tagaagcgaa cgcattcgca cttacaattt tccacaaaat
     3061 cgtatcagcg atcatagaat aaatcttact ttatatcgct tagatgccat tatgcaagat
     3121 gggctttttg atgaaatcat agaaccttta atcactcatc atcaagccca agctttacaa
     3181 gaacaaaatt tataagactt tatataaatt aatgcttatg tcgatttcca ctagcaccta
     3241 catgtgcgac atttccattt tctatatcat aagcttgacc aaaacctttt acaaagcgtc
     3301 cttttttaaa ttcaagcttt actagatgaa aatcaagcat cttgcgtata gttttaatgc
     3361 ctccttctcc tccggtttgt ttctcaaact catcataaat ttgatcaaat ctttcatctc
     3421 tctctaaaaa acttgcatct actctatagc gcaatctttt gcgaagtata acagaagcgg
     3481 ctttactctc atcctctaaa aacattattt ctatattgtt tggatttgct ttgatgttgt
     3541 taaaatgttc gcttacttca cttatataaa tataatttcc ccattgtgtg cttacaaaag
     3601 gtgcatacga gcaaacaact tctccattta catttaaagt tgccaaagct acagaattaa
     3661 aacttagcat aaattcattt aattcttttt ctactccact aaaattttgc tcactctttg
     3721 cactcatgca aagggatatt atagtatctt taatcgtgtt ttcatcggct tttttaggaa
     3781 attccactcg taaattttct ttatcattgt aaacaagatc caagccatta aaatcaacac
     3841 tttttagaaa aacatcttgt acttgctcaa taccaccaaa ttttttacaa agatcaacta
     3901 aatttgattt atgatgatca ttcatatgag aaataatgct ttcaaaattc atttttatcc
     3961 tttcttgatt ttaaaataaa atattaaaaa aaatggtatc aattatcaaa ttaaaaataa
     4021 cttaaaatat aaaaattatc tattttaaca aaaatttata ctaaattaag ttaataaagg
     4081 ataaatttcg ttcaaattat tatgatataa attatcatta tttattttat ttaaggagta
     4141 aaatttgcac ccaaataaaa agttttataa gttatttaag ttatctttat ttgcattatt
     4201 actaataact aatttaaatg cacaagaatc aaatgaagct atcaatctac aaaaagttgt
     4261 tgttagtgca acaggttttg aacaagatgc agactcaaat ttacgcaatg taatcagcat
     4321 tgaaggcaaa gatctgcaaa ataaaggtta tgtttcctta gaacaagcct tagaaagaat
     4381 ttcgggcatt agttttgtaa attttggact tggacgcaat atagacatgc gtggacaagg
     4441 aaataagtcc aatatagctg taaaagttat gatcgatggg cgtgctatta atgttcttga
     4501 taattcccat ggtgtaaccc cgctaaatag tatcaattta gataatgtag aacgcataga
     4561 aatcatacct gggggtgggt ctgtgcttta tggaaatggt actagagggg gtgtgattaa
     4621 tatcattaca aaaaaacaaa aatcagatgc ttttgctata aatttaaaaa gcagtaccta
     4681 taatcatggt ggactaggtg gaaatttagg tatcaatggc tccaaacaaa taaatgaaaa
     4741 tttagctttt agctttgata tacaaagttt taaccttgat ggatatcaaa aaggttataa
     4801 tgaaaaaggt tattttatta acacaaaaac ctatattgat atcaatgata atagcgactt
     4861 aactttgggt tataattatt ttaaaagcaa aaataccagc agtggctatc taacaaaaac
     4921 acaagctcaa agcaatccaa ctcaaaaagg taatagtgac aatatcacac aaatcaatcg
     4981 ccctgaaatt tctttggatt atcattacta ttttgatgat atatgggaat ttaacctaga
     5041 agctttttgg caaaatcaaa agatcaatta tctaaaagat gtttctacaa tgagttatag
     5101 aggtatgagt cttcctgtat atcaaaatgg aagtggtttt gaagacacgc ttacagggat
     5161 aagtttaaaa acaaaactaa attatgcaaa taattcttat tttatttttg gttatgaatt
     5221 tgcaaaccat gatgcaaaaa gaaagagttt ggtgtattat agcgctgcac ctattataaa
     5281 ctatcatagg atgacaactt taatggatat gactaaacaa agccattcta ttttcgctct
     5341 taattctcat aattttaatg aatttttcac tttatccggt ggagctagat atgaatttag
     5401 cacttataat accaatagat cttatagaaa tgaaatgagt atgaacggaa gaccgccatc
     5461 atcaaatcct atgatcacag actcaacaac cctttttgat accgataaaa acaccaataa
     5521 ttttgctttt gaaatcaccc ctaactttaa atactctgac acaggcaatc tttatcttaa
     5581 atacgaaaga ggttttgttt ctcctacacc tgctcagttt gtcaatcgca ataacaacac
     5641 tagtaatgga ataccaccct attattcatc gaacctaaaa gccgagatct ttgatacctt
     5701 tgaactagga attgatgatt tttggtggga tttttacggc tttaatctaa ctttatttta
     5761 cactctaagc aaagatgaaa tttcttatct tggaaaccct cattctacta gtggatcttg
     5821 gtggaaatat tataatatag atcaaactcg ccgtttagga gtagaattaa gcctgagtca
     5881 aaatttttta gatgatgatt taatctttag agaaagtcta acttatcttg atgctaaaat
     5941 ttctaaaggt gttaatgacg gcatgagaat tccttatgtt tcaaaaatca aagccacagc
     6001 tgggcttgaa tacgcttgga ataaaaattt ctcaaatttt attgatttaa cctatttttc
     6061 tagagcaaaa gatggtggca ctatagatga aaatacagga aaaatgtcta aaaattcttg
     6121 gataagggat tattttttaa cagatattgg catgaaatat aattataaaa aattacaaat
     6181 tttagcagga attcgcaatc ttttcgataa aagatactac acctatcaag acagtataaa
     6241 tgatcaatac ctagttggaa atggcagaaa ctactatgtt gaatttaaat acgcattcta
     6301 aaattttagt gattataggg cttttggtag cttatataat cgcttctttt acagcacttt
     6361 gcttaggaga tgagaattta aacccaaaag agcttttttc atatatcttt agccaagatg
     6421 aaattttaag acaaataatc atagatggac gcttaccacg gattataatg gcgattttaa
     6481 tcggtatgct tttagctagt agtggggcta tcactcaaaa tgtattttca aatcctatag
     6541 ctgatcctta tatcataggt atagcttctg cggcaacctt tggagcggtt ttggcgtatt
     6601 tgttaaaatt gaatgattat tattatggaa ttttaggttt tgtttgctct gccttttttg
     6661 ccctaggagt ttttaaaatt tcttctaaag cttctatagc aactttactc attatcggca
     6721 tagcagcttc atctttttta ggggctttca cttctttttt cacttatctt ataggcgagg
     6781 attcttttaa aatagtcgct tggcttatgg gaaatatagg caatgcttct tggtttcgtg
     6841 taggaatttt aatcttgcct ttaatttttt gtttgtttta tttttacgct cataaaaacg
     6901 aattaaacat acttttaagc ggagatgatg aagctagaaa tctaggggta aatgctcaaa
     6961 aattaaagat aaatttactc attgtctcat ccttggctgt atcttttgcg gttgctttta
     7021 gcggacttat aggctttgtt ggactcatca ttcctcatac tataagactt ttgcttaaaa
     7081 attataataa tgccttagtt atccctttat gtacagcatt tggaggatta tttttactta
     7141 tttgtgatac tttagcaaga actcttttag ctcctgtgca aattccgatt ggaattttaa
     7201 ctgcattttt tggagctcct atttttttat acttggcttt aagtgctagg agatttttat
     7261 aatgctaaaa atacatgatt taagctttgc ttatcaccaa aaagatttac taaaaaacat
     7321 tcatttagaa cttaaaaatc aggcttttat aggaatttta gggccaaatg gctcaggtaa
     7381 aagcactctt ttaaaactta tacttaaaaa tttaaaccca aataaaggag aaataagtct
     7441 ttttaacaca aatatcaagg atttttctct taaggaattt gccaaaattt gcggctttgt
     7501 gcctcaaaaa tcagaattaa acaccccttt aaaagtcata gatgtgcttt taatgagtaa
     7561 atatgcgaat ttaaaacacg cttttagttc ttattctaaa gaagatattt tagaaattaa
     7621 agaatttgct aaggatttaa gacttgaaaa ttttctagaa agaagcatac tttctttaag
     7681 tgggggtgaa tttcaaagaa tgcttttagc aagagctttg cttaaaaagc caaaaattct
     7741 ttttttagat gaacccactt cagcccttga tttaaactat gctatagagc ttttaagcct
     7801 ttgcgaaaaa cgagttaaag aaaaaaatat agccgttgtt gctatcttgc atgatttaaa
     7861 tttagcttct atgttttgcg ataaaatcct ttttttaaaa gaaggggaaa taaagtattt
     7921 tggaacgagt aaagagcttt ttactcaaga aattttaaaa gaaatttatg atttaaactg
     7981 cgagattatt tataaaaatt ctaaacctta tattttagct ttaaaggaga aaaaatgaaa
     8041 aaaattttaa ttattatgag tttgttttta atcacactaa atgcaaaaga acgccttgta
     8101 gtgcttgatc ctgcaagcat agaaaccctt tttatgctta aggctgaaga tcaaatcgta
     8161 ggcattgcta ctttacaaca ctcaaatatt tatcctaaag atcaaacctc aaaacttaca
     8221 agcgtaggca ctttttcaaa tccttcgctt gaaaaaatag tagcattaaa accaagtttg
     8281 gtgattttaa gctcttattc tttaaattta gaagaaggac ttaaaaattt tggtatcaaa
     8341 agtatcaatt caaaagccga gcgtttagaa gatataacaa aaaatatcac aaccttaggc
     8401 caaatcacca aaaaagaaaa agaagcagag cttttaaaac aagaatttaa ccaaaaattt
     8461 aaaaaattaa gcgataaacc cctaaataaa agtgcgattt atctttattc tagcaaccct
     8521 ttaatggcct ttaatgataa ttctttaata gctgatattt taagacttat agggattaaa
     8581 aatttaagcc cgcaaagtca aatttcaaga cctgttatat cagcagaata catactgaaa
     8641 caaaatccag acatactcat tcttggaatt aatgctaaaa acaatctttt agatacaaat
     8701 gctttattga aaaataccaa agcagttaaa acaggaagta tttattttaa caaagataca
     8761 cctatattat tacgtcttag tcctaagata atagatagaa ttcaagaatt taaaacaaag
     8821 ctagaaaata acaattttta atcacccaat cttgctttaa aaaattcgca agtttgacaa
     8881 agtttttcta tgcgtttatc ttcttcaaaa gcttttttca tcatctttat acgcggtgat
     8941 ttaaaaagct tatcaaagtt attttcaaaa acatttccca agttaatatc tgctttagta
     9001 tccaaacagc aaggcaccaa acttccatca cttaaaatcc caatttgctc ttttaaagca
     9061 tgacattttc cttttttata aaggggttca tcttttaaat ttggccattt aaaaagttta
     9121 ttttgataaa gcaaaatatg tctttgcaag cgatttttac ttaagtttgc atcgatctta
     9181 gcttcaaatt ctttggctaa aaactcataa atttttaaat ttgacttagg tgctttaaaa
     9241 ttagcatcta aattccaaag tcttagattg ataaaagaaa ggcttttttg ctctaaatgc
     9301 tttttgcaaa gttctaaaat aggcttaaaa tactgttcta aagaaatatt gctttgactt
     9361 aaaaaagaca ttaaagaaat attgatttga tggatattct cataccctaa caataaagct
     9421 tgatttttag aatttagata aaagccactt gtagtgattt caagtttcat agcttcatct
     9481 tttgcgattt ttagataatt ttccaaatta ggtaaaagca aaggatcgcc caaaagatga
     9541 aaggtaaaaa gctcagcttt attagaaatt tcataagcta agttttgaaa tttttcttca
     9601 ctcattaccc cgcgaattcc tttttgagaa ggacaaaaat cacattttaa accacaaata
     9661 tcgcttaatt ctatatatat ttttttaaat ttcattatat ttcctagagt aaacatttta
     9721 ccaaaattta tgaaatttat taaaatatgt aacattttta tcgatatttt tatctttttt
     9781 atttctcttc tttattttta aatatattaa acaaaaatca cactatactt aaataaaaat
     9841 ctaaaattaa ggaagggttt atgcaagagc ttactcgcac gaaaaaaatt cgctctatta
     9901 ttgctgcaag tagcggaaat ttagtagagt ggtttgattt ttatatctat gcttttacag
     9961 caacttattt tgctcatact ttttcaactt cagataatcc tgttatccag caaatcaatg
    10021 cctttggggt ttttgcagca ggatttttta tgcgtcctat aggctcttgg ctttttggct
    10081 ctttagctga taaagtaggt cgtaaaaatc tatggttata tcagtggttt taatggcttt
    10141 aggctctttt atgatagcag ccttaccaag caaagataca gtgggcgatc ttgctattat
    10201 cttgctttta atagcaagac ttattcaagg tcttagtgta ggcggggagt atggcatagc
    10261 agctacttat ctttcagaac ttgctacgga aggaaaatgc ggtttttact catcttttca
    10321 gtatgtaacc ctaataggtg gtcaactttt ggccgttgca agcattagta taatgttttt
    10381 attttttagc attgatgata tgaaagatta tgcttggaga atactttttg taataggcgg
    10441 aattttagca ctaggctcgc tttttgtaag aaaaatgatg aatgaaagtg ctacaaaact
    10501 tcaccagcat gaagatcgtg gtactttaaa agcattatgc aaatcttgga aacctttttt
    10561 aatggtactt ggggttacct ctggaggttc tttagctttt tacaccatta caacttatac
    10621 taaaactttt atggaaaata cgggtatgga taaaatgctt gttaataatc ttttcttagg
    10681 tgctttattt atactaatga tcattcaacc tctttttgga tatataggag ataaaatagg
    10741 tcacaaacga tctttaattg tattttgtat tttggcattg gtaggaattt atcctatttt
    10801 ttcacttata gccaataacg cacaaaataa tccttctttg acatttatgt tggtggtatt
    10861 attgtttgtt attttaagtt tttatacttc agttgctggg atttttaaag caaaactttt
    10921 tcctgaacat gtaagagctt tagggacagg tttgggttat gctatttcaa atgctgtttt
    10981 tggaggatct gctccttggg ttgctttaca atttaaaaat gcaggtatag aaaatggctt
    11041 ttttatctat atagctattt ttacaatcat catgcttata gctactttat gtttgcctaa
    11101 aaaatcagag cttaattaat tttaacgctt ttaaagaaag tgccgaaagt gcggtacttt
    11161 ctaactcttt taaggtttga aattcataat ttttattttc attgtttaaa atttgatgat
    11221 aaaccttgat attaagttta tacttagtat agccgtgctt aaactcccct acaaaactca
    11281 tatctttaga aagtttatat tctccttctt taaaaaaagg aaaattatac atacccttat
    11341 aaagcttatc ttggcttttc tgtatcgcaa attttttatt aaattcaaac aaaaaaagat
    11401 ttaaatttaa actctcataa agtatttttt tagctcttgg ataaaactct gtattaaatt
    11461 tgccttgaca aaaatcatac aaaggacaaa tcccacactt tgcattttta cccacacaaa
    11521 ccaaagcccc tatatcaagc aaagcttggt tgtgatcaaa ggcatgattt aaatttaaaa
    11581 gctctttagc tcttttttca agttctttca tgctaggatt ttccaaagca aaaagacgag
    11641 aaagcacacg gcgtatattg ccatcaacaa aagaaacctt ttgatcgtag ccaaaacaag
    11701 ctatagcgcc tgctgtataa gctcctatac cacttaattt ttttagatcc tcaacttctt
    11761 taggtaattt agccccaaac ttatccacgc attctaaagc tgcctttttt aaatttctag
    11821 cacgagtgta ataaccaagt ccttgccaag cctttaaaag ctcgtcttca ttagcattag
    11881 ccaaactttc taaagtagga aatttttgca aaaaggggaa ataaaacctt tctaaaactg
    11941 atttaacttg agtttgctga agcataattt cgctgatata aactccataa gctctatcaa
    12001 tatgctttaa actttcatca caattttgac tttgtaaatt acgccaaggc aaagttttgc
    12061 gtccattttt ttcataccaa agaagtaaat tttcttgtag tttttcaagc tctttttttt
    12121 gcataaatga gagtataaca aaaaatttta aaattttttg ctaaaattag ctcaaattaa
    12181 attattaagg atatccatgt tagctttttt taaaggttta agtgtaggtt ttttatgttt
    12241 attacttttt gttgcaggag tagtttttaa tgtagaattt ttaggcaaaa aagactctaa
    12301 tcatgattta tatttttcaa gaaatataga agtaagcaat acactaaaac ccgatatttt
    12361 atatgcaaat attaattttt gggcaaatga aaatttaagt tcaaaaatta cattagacaa
    12421 tagtgaaaaa gctgaaatca caaatacttt caatcaaatt ttagaacgct caaaaaaaga
    12481 aaatttttgt agcggaggaa gtttttcttt agaacctaat ttttcctata aagatggtat
    12541 acaaactcca aaaggtcaaa gatttgatgc gaatttagaa tgtgaattta aagaaaacca
    12601 acttgcagat tttaacaatc ttttaaatga catcaattct atcatagcta aaaataattt
    12661 tatcagcgtt tcaacaccag ccatacaaac aaaattttca aaagatacac taaacaacaa
    12721 caaagaaaat ctctacaaag agcttttaaa aacatcatac gaatatgaaa aaacttactc
    12781 tttagatctt aataaaactt gtgtattgaa aaatttacaa gtaaatgcca ataccaatat
    12841 cgcacctaga atgctaaatg caaaatctga caatatagaa ctttcatctc caattatcag
    12901 cgaaaaagaa caaattttaa acgcgaaagc tttatttatt tgcaaataac ttaaggcaaa
    12961 ataaactcct tttaagttta ttttgctata cttttatctt caattctttc agaaatttat
    13021 gcgggaatag ctcaggggta gagcacaacc ttgccaaggt tggggtcgcg agttcgaatc
    13081 tcgtttcccg ctccataatc acccgcccgg gtggtggaat tggtagacac aagggactta
    13141 aaatccctcg gaatttttct tccgtgccgg ttcaagtccg gcctcgggca ccactttttc
    13201 aacattatca gggcgacata gccaagcggt aaggcatggg cctgcaaagc cttgatctcc
    13261 ggttcgaatc cggatgtcgc ctccaaaagg caaaacttta ctttatcggg agatggctga
    13321 gtggtcgaaa gcggcggtct tgaaaaccgt tgagggtcac acctccaggg gttcgaatcc
    13381 ctttctcccg gccaccaaga ctttctagtt tatcaagctt atatcattcc tgaaattata
    13441 aaggatacta caaatgaaaa ataatacttc aatcttacta tttttgttat atcctaaaaa
    13501 aacttagaaa aactatggct aatataatta aaaataagaa atacaaatgg aaaatttaga
    13561 atttgttatc ttaaaacaaa aatataaaat tttaaaaata tgtcaaattt taaaatacaa
    13621 ggtaggcaaa tgaaagaatt ttatatgaat ttagctttaa atgaggcttg gaaatatcag
    13681 tttttaacct atccaaatcc ggctgtaggc tgtgtaatct tagataaaaa tgaaaaaatt
    13741 ttagccataa aagctcatga aaaagctgga ttagctcatg cggaacttaa tgccatagct
    13801 catgctttta aaagcttaag acctgaaatt tcattgccta aagaagcaaa cgccttgcat
    13861 gagtttattt gcaaaaacca tcaaggtgta tttaaagata gcatagcttt tgtcacactt
    13921 gagccttgct ctcatcaagg aaaaacgcct ccttgtgcaa aactctttag cgagctaggt
    13981 tttaaaaaaa ttttcatcag cgttaaagat ggaaataaaa tcgcaagtgg tggggctgaa
    14041 tttttaaaaa aacaaggcat agaggttgaa tttgacatac ttaaagaaga aggaaaaaaa
    14101 cttttaaaac cttttttaaa atggcaaaaa gggcaattta aactttttaa attagccctt
    14161 tctatgaatg gctcgccttt tggcaaaatc gtaagcaatg agctaagtcg cacttatgca
    14221 cataaaatta gagcggtgat tgatttgctt gtagtcggtg gagaaaccat aagaaaagat
    14281 caccctatac tagatgctag gctttgcaaa gcaaaagcgc ctaatctttg tatcttaagc
    14341 cgtcaaaata tagataattt tgataaaaat atccctttat ttaaggttcc aaaccgccaa
    14401 atttataccc aaattccaag tgaagctaaa tttttaatgt atgagggtgg agaaaatttt
    14461 ctcaaaacct ttaaagatga aatagatatg tttttgattt tccaaagttc aagtttaaat
    14521 gatgaaaaaa atgttacaat acctttaaat ttcaagccac tttataggaa ttttttaggg
    14581 agtgatactt atggcattta tgaactttag tggatttttt tatgcgagaa atgatttaag
    14641 attatttaaa atagaaaaga aaaatgaatt aaaatccttt ttttacaaag actacacctt
    14701 atcaagctac aaagatgctt taaatttaaa taatgaaatc tttttttatc aaagtttaaa
    14761 agaaggctta tttaaagaaa atgatgaaat tttagtttca aatttgggta aaaagatcat
    14821 actttttaga aatttcactc aaaattgcga taattttaat gaggcaaaat taaaacaaat
    14881 attgctttta ttttttttgt tattagcgag cgtatttttt gcaagtttgg ctatgattaa
    14941 tgaatttgga gccatagatc ttgttttttt aatgatttgc ttattgcttt tagtgatggg
    15001 agcaatcaat cttggcttgc tttttaagca aattcgcatt cttaaaagtt tttccaaaga
    15061 agaaatgaaa gaatttttaa gtctaagaat gaaaaaatac accaaagtgt aaaaacactt
    15121 tagcatactg tttttaaatt tgtagcaaga ccacctaaag aagtttcttt gtatttataa
    15181 ttcatatctt ttcctgtttc atacatggtt tctataacct catcaaggct taccatagga
    15241 gtggatttgc gtgtcattgc cattctagca gcacttatag ccttaatagc tccaaaggca
    15301 tttctttcta tgcaaggaat ttgcacaagt cctgcaactg gatcgcaagt taaacctaga
    15361 tgatgttcca ttgccatttc agcagcatta catgctttaa aagcattaac ccctaaaact
    15421 gttgccatag ccgcagctgc catagaacta gcactaccaa tttctgcttg acagcctgct
    15481 tctgctccgc taatacttgc atttttctta taaaaagaac ctataagcat tgctgttaat
    15541 aaaaactcta tagctttttc atcactaaaa cctatagtat ggtttttaag ataaagcata
    15601 acagcaggga taacggcaca tgctccattt gttggcgcgg ttacaacttt tgctccgcta
    15661 gcattttctt cagcaatcgc aatagcatat aaagaaataa aatctataat gcccatagga
    15721 tcagctgtca tcgccactct ttctttaagc cctttagctc tacgttttaa atgaagtttt
    15781 ccgggcaaat aatcttcatt tggatgcgta ccattataat acacttcttg catcacttcc
    15841 caaatttcaa gacaataagc acgaatttcc tctttagtgt gaaattgcaa ttcataacga
    15901 taggaaagct ctgctaaatc ccaatctctt ttatcgcaaa gctctaaagc ttctttagcg
    15961 ttattaagct ctatatctag ttttttcttt ttattttggt tagaattttt accttttttt
    16021 tctaattccg cagctgttaa aacaaagcct ccacctacag aataataagt ttcctcatca
    16081 actaacccac ctttacaatc ataagcttta attttcatac cattctcatg taaaggtaaa
    16141 aaatctttag aaaatatcaa atctttttca taattaaaac taagtttttt ctcgccacaa
    16201 aaatcaattt gagcattttc aatagcattt ttatttactt catcttgtat tgccgcactt
    16261 aaatttttag cttctaagcc atttaacccc caaattacag ccttatcact caagtgtcct
    16321 ttgcctgtta acgacaaaga accataaaga gtaacctcaa ctctatcaat ttcatcaagc
    16381 tttttagcaa cttttttaca aaataaattt ccagcaagca taggccctaa agtatgagaa
    16441 gaagaagggc caacacctat tttaaaaatg cttaaattac tcatttttta tccttaattt
    16501 ataaaagatc atgaattgca gcagaaattg caactatccc cattaccaaa acaaaaagat
    16561 ctaaaaattt attacgaaat cttgccaaaa tatcaaaacg ataaatacaa taaagcggca
    16621 ttaagaaaag caaaatagcc aaaacaggac caccaatagc ctcgataatt cctataacac
    16681 ttggattttt atacgcaaca agccacgcga tagcaaaggt aatgatcgct gttaaagttt
    16741 gagcgaattt accttgaatt ctaccattac ttgctttata taaaatacca tttaagcctt
    16801 cttgagaacc aagataatgc cctaagaaac ttttgctaat agccacaagt gcaacaatag
    16861 gtccaacata agctagtaaa gaaacttcag gaaatttatt tgctataaaa gtaagaatat
    16921 tgatattttg atcttttgct gatgcaaaat cttctggtgt aaaggttaaa gcacaagaaa
    16981 aaacaaaaaa cattacaaca aaaaccataa gaataattgc caaagaaata atttttctag
    17041 cgcgaggttc agcataacca ccatattctt ttttacaata acaagcaagt gaagaaatga
    17101 taggagagtg attaaaacta aataccatca caggaataac aagccataaa gtaacccaaa
    17161 aattacttgt tgaaattacg gaaaaatcaa catttgcaaa taacgataaa ttccattgtg
    17221 gaattaaaag caatgaaaaa ataaataaaa atataataaa aggaaaaaca agaaaactca
    17281 ttgcttttgt tacaacattt tcaccaagaa tagaaatcaa aaccaaaact ccaacaatca
    17341 aaaaactcac ccaccaacga gcagcatgag taagatctgc attgaaattg aactgattga
    17401 ttaagaactc aagcaaagtt gttgtaagat tagcactata aaccaataaa ataggcaaaa
    17461 tagcaaaaaa atacaaaagt gtaattaaaa atccaccgcc cttgccaaaa taactttctg
    17521 caacaaaagt aatatcatct tttggattag aacttgaaag cacaaagcga cataaatttc
    17581 tatgagctaa gtaagtcata ggaaaagcta aaacaagtat aactaacaaa ggtatcaatc
    17641 caccaagccc agcactaata ggcaacaaaa gtacgccggc tccaatagct gttccaaaaa
    17701 gagataaaac ccaccttgta tcgtgactag tccatttagg agtattcatt attcttcctt
    17761 aaatttaaga ttacatctct tttattttag caaaatattt ataaataatt attttttaaa
    17821 aaaaatattt taaatcttat gtaacatttt gtaaatttaa ttttataaaa a
//
LOCUS       DAQSLY010000022        17531 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.022, whole genome shotgun sequence.
ACCESSION   DAQSLY010000022 DAQSLY010000000
VERSION     DAQSLY010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.022"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..468
                     /locus_tag="R2H98_000608"
     CDS             <1..468
                     /locus_tag="R2H98_000608"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEE9023508.1"
                     /translation="FINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDI
                     ISNSIHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGI
                     YLLIKDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            586..1932
                     /locus_tag="R2H98_000609"
     CDS             586..1932
                     /locus_tag="R2H98_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEE9023509.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHSLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLICNYLGMEFNEDKFSSELL"
     gene            1981..3423
                     /gene="pyk"
                     /locus_tag="R2H98_000610"
     CDS             1981..3423
                     /gene="pyk"
                     /locus_tag="R2H98_000610"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEE9023510.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVENIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            3521..4156
                     /locus_tag="R2H98_000611"
     CDS             3521..4156
                     /locus_tag="R2H98_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023511.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDAAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQDTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4187..6649)
                     /gene="pflB"
                     /locus_tag="R2H98_000612"
     CDS             complement(4187..6649)
                     /gene="pflB"
                     /locus_tag="R2H98_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEE9023512.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSDSGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DVGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(6659..7894)
                     /gene="serS"
                     /locus_tag="R2H98_000613"
     CDS             complement(6659..7894)
                     /gene="serS"
                     /locus_tag="R2H98_000613"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEE9023513.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(7905..8864)
                     /gene="trpS"
                     /locus_tag="R2H98_000614"
     CDS             complement(7905..8864)
                     /gene="trpS"
                     /locus_tag="R2H98_000614"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEE9023514.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKI
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(8861..9358)
                     /locus_tag="R2H98_000615"
     CDS             complement(8861..9358)
                     /locus_tag="R2H98_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEE9023515.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKTCIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9345..10727)
                     /gene="der"
                     /locus_tag="R2H98_000616"
     CDS             complement(9345..10727)
                     /gene="der"
                     /locus_tag="R2H98_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEE9023516.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGIKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNILIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            10828..11760
                     /locus_tag="R2H98_000617"
     CDS             10828..11760
                     /locus_tag="R2H98_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEE9023517.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLAAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            11757..12572
                     /gene="kdsA"
                     /locus_tag="R2H98_000618"
     CDS             11757..12572
                     /gene="kdsA"
                     /locus_tag="R2H98_000618"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEE9023518.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            12569..13033
                     /locus_tag="R2H98_000619"
     CDS             12569..13033
                     /locus_tag="R2H98_000619"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEE9023519.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13033..13431
                     /gene="nusB"
                     /locus_tag="R2H98_000620"
     CDS             13033..13431
                     /gene="nusB"
                     /locus_tag="R2H98_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEE9023520.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            13428..14267
                     /gene="pyrF"
                     /locus_tag="R2H98_000621"
     CDS             13428..14267
                     /gene="pyrF"
                     /locus_tag="R2H98_000621"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEE9023521.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            14264..15049
                     /locus_tag="R2H98_000622"
     CDS             14264..15049
                     /locus_tag="R2H98_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023522.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNHYKEFCEEIFYNIELEKITQN"
     gene            15105..15998
                     /gene="msrP"
                     /locus_tag="R2H98_000623"
     CDS             15105..15998
                     /gene="msrP"
                     /locus_tag="R2H98_000623"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEE9023523.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            15998..16537
                     /locus_tag="R2H98_000624"
     CDS             15998..16537
                     /locus_tag="R2H98_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEE9023524.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWTILHFLNYFIFDRNAQILRLFDDISHR
                     LLEAIGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLILASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKS"
     gene            complement(16534..>17531)
                     /locus_tag="R2H98_000625"
     CDS             complement(16534..>17531)
                     /locus_tag="R2H98_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9023525.1"
                     /translation="NKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEILQRIINF
                     EPKQSKKIKIESVLKDQDIFELIEPSADINDIIMPENTKELLENILKQQDKKVLERLH
                     SWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKPVLSFDCSKILSKWVGESEQN
                     VRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIFLEQIERF
                     SGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFEKDFNINI
                     LSNYELSGAQILMVVKNTALKVAVSQDGVFKMQDFIESIQKELNSSFDKSKIVGF"
BASE COUNT         6123 a         2796 c         2564 g         6048 t
ORIGIN      
        1 tttatcaatc ttgaacctta ttttttattt gatacaattt atcaaggatt aggaatcgat
       61 cgcatagcag cttgttatac tattgaagat ggagttgttg tagatgcagg tagtgctatt
      121 acaattgata ttatttctaa ttctatacat cttggtggtt ttatcttgcc aggtattgca
      181 aattataaaa aaatttatag ccatatttca ccgcgattaa aaagtgaatt taatactcaa
      241 gttagtcttg atgcattccc gcaaaaaact atggatgctt taagttatgg tgtttttaaa
      301 ggaatttacc tactgataaa agatgccgct caaaataaaa agctttattt cactggtgga
      361 gatggacaat ttttagcaaa ttatttcgat cacgcaattt atgataaact tttaatcttt
      421 cgaggaatga aaaagattat aaaagaaaat cccaatttac tttattaaaa atgttacaaa
      481 aattctcatt gatatcaaac cttaatgaaa tttaactttt tgtaaaacaa attcaattaa
      541 actttattta gaaaaaagtt tattaaaata aaaaaaggaa aaacaatgag ccaacaagaa
      601 tttgatgtgc ttgtcatcgg agctggaatt tcgggagcag cattatttta cgagcttgca
      661 agatatacaa atattaaaaa tattgctttg atagaaaaat ataatacagc tgcaacatta
      721 aattctaagg gaacgagtaa ttctcaaacc attcattgtg gagatattga aaccaattat
      781 actttagaaa aagcgcgaaa agtaaaaaga acagctgata tgatagttaa atatggactc
      841 atgcaaaatg cgcaaaataa tttcatgttt tctcatcaaa aaatggctct agctgttgga
      901 gatatagaat gtgattatat gaaaaaacgc tatgaagaat ttaaagaact ttatccttat
      961 ataaaatttt tcgataaagc aaaaatcaaa caaattgaac ccaaggttgt tttaggagaa
     1021 gattgcaatc aagatagacc tgaaaatatc tgtgccatgg gtgttgaaag cggcgaggtt
     1081 tttacaactg tagattttgg gaaaatgagt ataaatctaa tagaacaagc ccaaaaacaa
     1141 aataaaaata ctttcgttgc ctttaatcaa gaaattattc acatagaaaa aaaagatgat
     1201 atttttatat taaaaacctc aaatcatcaa gaataccatg ccaaaagcgt agttgtcaat
     1261 gctggggcgc actctttata tttagcacat aaaatgaact taggtatgga taagtcttgt
     1321 tggcctgttg caggaagttt ttatttaacc aaacaaaaac ttttaaatgg caaagtttat
     1381 atggtgcaaa atcctaaact tccatttgca gcccttcatg gagatcctga tttgcttgct
     1441 gatatgaaca ctcgctttgg acctactgca cttgttattc caaaactaga acgttatcat
     1501 agtctaaaat cagttccaga attttttgaa gcactaaaac ttgataaaac tgttttaaaa
     1561 gtaactttta atatgtttaa agatgcaaca attagaaatt acatctttta taattatctt
     1621 tttgaactac cttttattga taaaagctta tttgttaaag atgccaaaaa aatagtccca
     1681 agtcttaaag caagcgatat ttattatgcg aaaggttttg gaggcgtaag accacaagtt
     1741 attgataaaa ctaaaggaga attaatgcta ggtgaagcaa gcatcacaga aacccctggt
     1801 attattttca atatgactcc aagtcctggg gcaacaagtt gtttaggaaa tgctgaaaga
     1861 gatgcaaagc ttatatgtaa ttacctagga atggaattta acgaagataa attttcttca
     1921 gaattattgt aatcattttg tttctatttt tagctacaat aatttcaaaa ggagtttacc
     1981 atgcttaaaa aaacaaaaat tgtagccaca gtaggtccag caagtgaaaa ggaagaaatt
     2041 ctacgccaaa tgattatcaa tggtgtaaat gttttccgtt taaacttttc tcatggaaca
     2101 catgagtatc ataaaaaaaa cttagatacc ataagaagag tagctaaaga attgcatact
     2161 cgtattggaa ttttacaaga cattagtggt cctaaaattc gtacaggtga acttaaagaa
     2221 ccatttgaat taaaaaaggg tgatagactt gatttttatc gtgaaacaat tttaggggag
     2281 aagattgctc aaaatcatta taaaatcagt attaatcaaa aatctatttt agatatgtta
     2341 aaaattgatg aatatattta tctatatgat ggatcaattc gtgctaaagt agaaaacata
     2401 gatgatcaaa aaattgaaac cattatagaa aatgatggtt ttttaaactc aaataaaggt
     2461 attaattttc cgaatactaa aatcaatatt gatgttatta cacaaaaaga taaaaatgat
     2521 ttactttggg gtataaaaaa tgaagtagat tttttagcaa tatctttcgt acaaaatgca
     2581 cacgatattg atgaagttcg tgaaatttta gcacaaaata acgcaaaaat atctattttt
     2641 gcaaaaattg aaaaatttga tgcagtagaa aatattgatg agattattaa atctagcgat
     2701 ggtataatgg ttgcaagagg agacttaggt attgaggtac cttattataa agttcctaat
     2761 atccaaaaag aaatcataca aaaagcaaac aatgcctcta agcctgttat tactgcgact
     2821 cagatgcttt tttcattagc caaaagcaaa accgccacaa gagctgaaat ttcagatgtt
     2881 gcaaatgctg ttttagatgg aacagatgca gtaatgctaa gtgaagaaag tgccgttggt
     2941 atagatcctg caaacgctgt tgatataatg tgccaaacta taatagaaac agaaaaacgc
     3001 tatccatata acaaatttaa tgattttaat gatttagaca atacagataa aatcatgcgt
     3061 tcttcagctc atcttgcaac agatcttaac gctgatgcta ttttttcttt aacaagtagc
     3121 ggaaaatctg ctattaagat tgcgagatat cgtccaaata tagaaatcat agcagtaggg
     3181 cattctgaaa aaaccttaaa ctctttaagt atagtttggg gagttaatcc tgcgatcttg
     3241 gttaacaaaa gtaatgaact tacagaatta ttaaaagact ctgtaagatc aagtgttgaa
     3301 aaaggtttta tggatgaaga taaatgctat cttctaactg caggctttcc aacaggagta
     3361 gaaggtacta gcaatcttat ccgcattctc aataaagagc aaattgctta ttatctacaa
     3421 taaaacatta aattcctttg aaaataagga atttaatgtc cttataaatt ttttaagtca
     3481 aaagtcgata taaattaaag cctcacacaa aggagcaaat atgcaagtga atactttttc
     3541 aaatatcgct agcatggcac aaacacaagt tagcaataag aaggcagatg atgctaagga
     3601 aaacacaaaa gacaaaaatg ttcaaagtgc taattctagc aaggatgtag ataaaaatac
     3661 ccttgaaaaa ttaaatgcac ttggtggaaa aggcattaca caaatttacc tagttcagtt
     3721 tcaacagcaa acaatgaatg ctgtaatagg ttcgagcaat gcccaaactg gactagatag
     3781 tcttttaaat ggtgccaatt tagatgctgc gaaatctata cttacaaata ttgattttgc
     3841 atccttaggc tacagtggca aaaatccact tgatatgaat acagatgaac ttcaacaact
     3901 tgtaagtgaa gatggttttt ttggagtgga aaatacagcc aatcgcatcg cggattttgt
     3961 tattaaaggc ggtggcgatg atgttgaaaa attaaaaaaa ggtcttgaag gtatgaaaaa
     4021 aggatttgag caagcagaaa aaatgtgggg tggagaactt cctcaaatca gtcaagatac
     4081 aatagatgcg gcacttaaaa aagttagcga tcgcatcgat gaactaggcg gaaaaactct
     4141 agatcttcaa gcttaactaa aaatgcttag aaatttctaa gcatttttag ttgttattaa
     4201 tatcaaaagt aaaaaattca ctcttaaaat tattaggtaa agttttatac tgagatatcg
     4261 cagcttcata gttctttact tcttgataca acataccaag agctgcttta ctctctttgt
     4321 tatttttatc tgtaagttta gaaagctgca aaagcgctat agctgaattt ggattatttg
     4381 cacctacggc tgctacggct gctaaaaata aagttttagt atctttagct ccataatcat
     4441 caatcaaaga attataaagc gcataagcct cctcgtattg ctgtgcaaaa atatccaaat
     4501 aagctaaagt ttgtaaaata ccctcatctt ttgctcctga aacattaatc aactctttaa
     4561 atttctgtct ttctaaattt aaaagccctg caatatgcat taaattaaca taaaattccc
     4621 tagctatatt tggcccacca aaaacactac gataatcaag ttttaaattt ttaaaatgaa
     4681 tttgagcatt ttgagcatat tctttaatat ttaaatttga atttaaagaa ttaaaataca
     4741 aaatatttgc caaaatatct tcaggcaact ctgaacgcaa tttagcaatt ttcacatcta
     4801 cttgattatt aaggttatta tttttagcaa caatagcttc aaaaatcaaa ctcaaaggcg
     4861 tatctttttt tgtttcatct aaataaggaa gcatagaaat ataattatta ttaactaaaa
     4921 ataacatact tttttgcata ttagctttaa aattagaatc agcagctata ttatcaagaa
     4981 tttcattgta aagtttagtt gtatcaatat caattaattt tgcacaaaac atagcaaaag
     5041 cacctgctaa gtaattttta ggattaagat gatatgaact tgaaaaatgc ttataagcaa
     5101 gttcataatt ttgcatttgg gcataagtta aagccaaatt ataatgtaaa atactatgtt
     5161 ctggataatc cttgataagt ttttgaaatt cttggttagc aaggcgtaac ttctgattta
     5221 atgcatagtt aataatattg gcaattttta cattggtaga tgaaagagcc ttgcttatat
     5281 taagataaat tcccacatca gtactatcat caacgaaatc tgtaacatta gcttttttaa
     5341 tatataaagc agcctgctta ctatcaaaaa cctgataagg tgcaaaataa aaaagcaaat
     5401 cgaattgatc tttttgtttt tttagcaaat cttttgaaaa agaattttga gcaactgcta
     5461 tattaaaaag atccttattt aaacgaactt gaattttata agtatctaaa atcttatatc
     5521 tatctttatc gttatcataa gaattttgca agcgcgctaa catatcttga taatttcctg
     5581 ttttaatatc aaccaatgtt aaagccgcca aactctgatt aaaatctctt tcaattttca
     5641 tcgctgtact taaagcgact ttagctttag catattctcc tattctagcg tataaaagac
     5701 ctaaagataa actagattca aaattgcctt gagaatttaa ttgctgtata gccttggaat
     5761 caaagtccat ttttgcataa attttagcag acaaatactt tgcaacatca gaatacggct
     5821 ccacatctgt tctttgtaac atttgtaagg cctcagggta atatcctttg taataattaa
     5881 tcaagcttaa ataataatca tataattttg attttccttc ttttggaaga tacacttgag
     5941 ctaaatcaat ataatatcta aatttttcct tatcattaag ctttaaagca caaacagcag
     6001 cattgatagc agctacactt tgattttctc cattggctat agctttcttg aagctttcaa
     6061 aagcttcttg gaatttattc tcattcattt gagaaacgcc taaattataa ttagataaag
     6121 attcgttata tacggcaact tgctcataaa cttttaaagc ctgttcaacc tcacccttta
     6181 aatataaagc atttgctttt tggatcatac catcaattct ttgcatatca ttgtatttat
     6241 atgattcatc aggcataaca acaggttgtt ctaaaggctt agaagctata atatctggtt
     6301 taatttttcc ttcactaaaa gttaaataaa aaagtgtaaa aactaaaata caaataatcc
     6361 ccaaagataa acccacaaga gacataaact tacgatcttt ataccaaggc gtaggctctt
     6421 gactttcaac ttcttcaaaa gttgatacat cttcaggcgc actttctctt gtaaatttaa
     6481 aaccactatc actattttct tgaggtaatt cttctggcaa tgatgcaaat tcttcatctt
     6541 ctggagcttg cccctcttgc cccttaaatc cctctaaact ctcatcaagt cttggttgat
     6601 ttaagccatc ttcgggtttt tctagtatta tatcttcttg ttcagccatc tatactcttt
     6661 aaaaatattt tttcaaaaca tcaggaatat gaatttttcc ttctttatct tgataatttt
     6721 ccataatcgc taccaaggtt cttcctactg ccaaagatga gccattaaga gtgtggacga
     6781 gttcattttt tccttgttcg tttttatagc gaattttagc gcgtcttgct tgaaaatcac
     6841 gacaatttga aaccgagctg atctcacgat atttattttg tcctggaagc cacacttcaa
     6901 gatctacagt ttttgctgca ctaaaaccca aatctccagt gcaaagcatc aaatgtctat
     6961 gcgctaaacc taaagaactc agcaaatcac ttgcacactc aagcatttca ttaaacacac
     7021 tatcactttg ctcaggttta gtgatactta caagctctac tttttcaaac tggtgttgtc
     7081 ttataatacc ccttgtatca cgccctgcac tgcctgcttc ttttctaaaa caagcactat
     7141 aacaagtcat ttttatcggt aaagtttcac tcgctaaaat ttctccgctg taaagattgg
     7201 ttactggaat ttcagaagtt gagatcaaat acaaatcctc atcatctacc ttatacatat
     7261 cttctttaaa ttttggcaac tgacccgtcc caaacatagt agcaccattt accaaaaaag
     7321 gtacattaac aaattcaaat ccacgacttc tattaaaatc tatcatataa tttaccaaag
     7381 cacggcttaa taaagctcct tcatttttaa gcacacaaaa acgactttgt gaaattttta
     7441 ccccacgcat aaaatcaagc caatttaaac tctcgcctaa ttcaaaatgt tcttttggag
     7501 taaaatcaaa gctaggtgga tttaaaactt ttttaagctc cacattttca ttttcatctt
     7561 cacccacagg cacacattca tcagggatat ttgggatggc atgagcgatt tcctcaagct
     7621 cattttctaa agcatttact ttagcgcttt gctcattaat tttgctttta ttttcgctta
     7681 attttgcttt taaactttct ttatcttcgg ctgtagcaag ctctttactg aatttatttt
     7741 gaaaagcttg aaattcttcc aaggctattt tttctttttt taaacttgca aaaagttcag
     7801 caagtttttt taagatattt tcatcaactt ttttattttt taacttttta gccacttcat
     7861 caaaattatt ttgcaaattt tttaaatcta gcattttcta ctccttaaag tccgattttt
     7921 tcataaattt tttgcatttt ttcttgggcg atttttcttg cttttgtcgc accaaaatcc
     7981 aaaatttctt tcaaatgcga aggcttttct aaaagctcat tatatttttc tcttgcttct
     8041 ttaaaataag catttacaag ctcgtttaaa tatattttaa aatgtccata accctcacca
     8101 cctttttcat agcgtatttg taattctttt tgccctgatt catctaaaaa aagctttgcg
     8161 attttaaaaa tattgcagtt ttcatgatct tttggatctt ctaaagcggt actatctgta
     8221 actatggaag aaatttgttt ttttaaggtt ttttcactgc taaaaatatc tatagtattt
     8281 tgataagatt tactcatttt tgctccatca gtacccacaa ccacagctac ttcttcatta
     8341 actctcgctt ctggaagggt aaaaatttca ccccattcat tattaatttt taaagcaata
     8401 tcgcgtgcga tttcaacatg ctggatttga tcttttccta cagggacaat tcgtgtatca
     8461 aaaagtaaaa tatctgccgc cattaaaaca ggataagaaa aaagcccatg tgaagcacta
     8521 agtcccttag caactttatc cttgtaacta tgcgcacgct ctaataaacc cataggagta
     8581 aattgcgata aaatccaata aagctccata acttccttaa catcactttg caaccaaaaa
     8641 acgctttttt gaggatctat accaaggctt aaaaaagccg cagcagcttt taaggaattt
     8701 tgtttaagtt tttctccatc ttgagaagaa gtcatggcat gataattagc aataaacata
     8761 aacatttggc ttttttcttg tgcatctacc atttgcttaa tcgcaccaaa ataattacct
     8821 atatgcaaat cgccacttgg ctgaaggcct gttaatactc tcattttatc acctttttaa
     8881 tctcgcttaa aagctcatct atatttttat tttctatatt taaaataaaa tttgcctttt
     8941 gttcatactt gcttaaacgc tcattatata atttttttgc tttaatttca tcataaaata
     9001 aaggtctttt agaaatttca tctttgtcta aacgcttttt taaatattca aaatctgctt
     9061 ttaaataaat acaaaaacct gctttttcta aatttgaaac attaacaaaa cccccacctg
     9121 tagcaataca agttttctca caagaactga aaaaatcagc cattttttgc tcttgttctc
     9181 taaaaaaatt ttcccctttt tgttcaaaaa tttcactgac tttttgatta aatttttgtt
     9241 ctattaaaaa atcactatct aaaaaaacaa gatctaaatc cttagctaaa gctcttgcta
     9301 aagtgctttt tccagaaccc ataaatccta taaaaacgat atttttagct ttcatcattt
     9361 tctttactgc cctttttacg cgaagcaatc actaaaggca caccttcaaa attaaattct
     9421 tttctgattt gattttgtaa ataacgctta tagctaaaat gcaaggcctt aggacgattc
     9481 ataataagtg caatttttgg cggtgctaag tcatattgta ctgcataata aattttaacc
     9541 aatttcccat aatcatgcgg caaaggatgt gctcttgtgg cattttctat caagatatta
     9601 agcttagaag tttggatttt ttgagtgaaa ttttcaaaaa tttgcaaaat tttatcgagt
     9661 aaaacatgca ccctttttcc acttaaagct gatacgctaa tcacgggtgc gtaagctaga
     9721 aatttaaaac gatcaagacg caattctttt acagtcttat caaaatccat ctcactttta
     9781 tcccatttat ttaaaacaat aatcacaccc aaataatgct tagccacaag cccagcaatg
     9841 cgttcatcaa gctcgttaaa gccctcatgc gcatctaaaa ccaaaagtgc tatttgagaa
     9901 tgagataaaa ttttttccgt gcgatttagg gcaaagcgtt cgagtccttg aattttaccc
     9961 ctttttctaa tacctgcagt atcaacaaat tctatcactt tatctttatg aactacactt
    10021 tcattaacag gatctatagt agttcctgca atagaactta caacactgcg ttcttgttta
    10081 accaaagcat ttaaaagact tgattttcca acatttacac gccctacaat acccactctg
    10141 atatgatttt gatcgacttc tttaaattga aattcttttc cttcttcata atactctaaa
    10201 aaatcttcta aattttcttc ttcatcgggg attaaaaact cttcatgtaa aaatttttca
    10261 agccattcat aaagttcatc taagcctaca ttatgggtta ctgaaagatt aaagatttcc
    10321 tttataccaa aatttgcaaa ctcccaagcc ctttcttcat cttttttatt atctacttta
    10381 ttaatcacta aggctatagg ttttccaagt ttttttaaag aataaaaaaa ttgtctatcc
    10441 tcatcatcag gcgctaattt cccatcaact agataaagta tgatatcgct ttctttggct
    10501 acttttaaag tgtttttttt cacattttta aaaagttcat cactttcatc aagccctcca
    10561 ctatcaataa gcatggcttt ttttgaatga atatgaattt gcgttttatt tgtatctcta
    10621 gttgtacctg aaatatcact tgtaatagct attctttgtc ttgccattct attaaaaagg
    10681 cttgatttac caacatttgg cttgcctata agtatgatgc tttgcatttt tttcctagaa
    10741 aattatattt ttaaaattat ataaaatttg gcttaatatt aagcaaaaaa agactagaat
    10801 taacccagat tttagtcaag gaaaaaaatg ctaaaagtaa tcaagcataa tttaggaatt
    10861 tatttcatga ttttagcatg tttggatttt gcacttatgg gagcttgtgc aaaaattctt
    10921 agcaaggaaa tgagttctat agaaattatg ttttttagaa atatcatagg aatttttttc
    10981 atagtctatc ttttaaaacg atctaaggcg cataaagaag ggggacattt ttggctcttg
    11041 gtatttcgtg gagtagtagg cacgctttca ctatatatgt ttttctataa tgtttcaaat
    11101 attacactag gtggagcttt tgcttttcaa aaaactgctc ctatttttat tactttaata
    11161 gcttttgttg tttttaaaga aaatattggt atcaaaggct ggataggaat tttaatagca
    11221 tttggtggag tacttttaat cgctcagcct tgggctcata atttaaatca ttcaggcttt
    11281 gatttaaaaa attcagttat aggtatcacg agtggatttt tagccgcttt agctcttaca
    11341 agtgtaagag aacttagaaa atcttacact acagaacaaa ttgccttttc ttttatcctt
    11401 ttaggaacct taatgccttt aatttctatg atcagtgctg aattttttga accacagcat
    11461 cttgattctt tacatttaga tttcattcta gcgccttttg tgatgccaag tcttgcagct
    11521 tggcttatca ttgccattat gggaacttta ggcaccattt atcaaattca tgtcactaaa
    11581 gcttatggta tcgctaaaca agcaggagtg gttgccggag ttagttatct tgatgtagta
    11641 tttagtatga tagttgggat aattttggga gataatttac caagtactat ggttttttta
    11701 ggtataatag gcattatttt tggtggatta attttagtta agaacaaagg aaaaaaatga
    11761 aaaaaatgat actcattgct ggtccttgcg tgatagaaag caaagatttg atttttaaag
    11821 ttgctgaaca gttaaaaaat tttaatgaaa atccaaatat agaattttat ttcaaatcaa
    11881 gttttgataa ggccaatcgc acaagtatta attcttttcg aggtcctggt cttgaagaag
    11941 gattaaaaat tttacaaagc gtaaaagatg aatttggtat gaaaatctta accgatatac
    12001 acgaaagcaa tcaagcaaac cctgtaagtg aagtagctga tgtcttgcaa attcctgctt
    12061 ttttatgtcg tcaaaccgat ttacttgtag ccgcagcaaa aactaaggca aaaattaata
    12121 tcaaaaaagg acaattttta aacccaagcg atatcaaata cagcgttaaa aaagttctac
    12181 aaacccgtgg tatagaagat gaaggctatg aagctgctca aagaaatggt gtttttgtag
    12241 ctgaaagagg ggctagcttt ggctatggaa atttagtagt agatatgcgt tctttagtta
    12301 tcatgcgtga atttgctcca gttatttttg atgctaccca tagcgtacaa atgccagggg
    12361 ctgcaggtgg aagtagcgga gggaaaagcg aatttgtaga acctttagca agagcggcag
    12421 cagccgtagg catagatggc tttttctttg aaacacatat taatccttgc gaggctttat
    12481 gcgatggacc taatatgctt aatcttacac gccttaaaaa ttgcgttaat acattactag
    12541 aaatacaaaa tatcataaag gaaaacaaat gaatattatt gaaggaaaat taaatttaga
    12601 ctcaaataca aaaattgcta tcattaatgc aagatttaat catatcatca cagatcgcct
    12661 tgtagaagga gcaaaagatg cttttttaag acacgggggc aaagaggaaa atctaagcct
    12721 tatacttgtt cctggtgctt ttgaacttcc gtatgcgtta aaaaaagcta tagaaagcaa
    12781 aaaatttgat gcaatttgtt gcgtaggcgc agtaattcgt ggctcaactc cgcattttga
    12841 ctatgtttca gcagaaacca ccaaaggcat agccaatgtg agtttaaatc ataatatccc
    12901 tgtaagcttt ggtgttttaa ctacagatac aatagaacaa gccatagaaa gagctggaag
    12961 caaagcaggc aataaaggct ttgaagctat gacaactgta atcgagatgt taaatttaag
    13021 caaggagctt taatggcaac gcgtcatcaa gttcgccaaa gcgtcatctc cttactttat
    13081 gcttttgaat taaattctca aaacaacgtt tttgtagatg aaattttaga tgaaaaaaaa
    13141 atacgcaatg aacaaaaaaa ttttacttta aatttatata atggaatttt agataattta
    13201 aacaatattg atgaaacctt aaattcattt ctaaatgata atcaaattac agctttagga
    13261 catgtagaaa gagctatact aagacttgga gcttatgagt tactttttac cgatactcct
    13321 agcgccattg tcatcaatga ggctatagaa cttgctaaag aacttgctaa tgacaattct
    13381 ccaaaattta taaatggagt tttagatgcc ttaataaagg ctaaaaaatg aagctttgtg
    13441 tcgcacttga tctttctaca aaagaagaat gcttacaact tgccaaagaa ttaaaaaatt
    13501 tagacatatg gttaaaagta ggtttaagag catatttaag agatggtttt aaattcatag
    13561 aagaacttaa aaaagttgat gattttaaaa tatttcttga tcttaaattt catgatattc
    13621 ccaacactat ggcagatgct tgcgaagaag tatcaaaact tggtgttgat atgatcaata
    13681 tccacgcaag tgctggaaaa atagccatac aagaagttat gacacggctt agcaaatttt
    13741 caaaaagacc tttagtttta gcagtttctg ctcttacgag ttttgatgaa gaaaatttct
    13801 ttagtattta tagacaaaaa attgaagaag ctgtaattaa tttttcaaaa atatcctatg
    13861 aaaatggact tgatggtatg gtatgctctg tttttgaaag caaaaaaatt aaagagcaca
    13921 caagttcaaa tttcttaacc cttactcctg gaattcgtcc ttttggagaa acaaatgatg
    13981 atcaaaaacg tgttgctaat cttgcaatgg ctagagaaaa tttgagtgat tatatcgttg
    14041 tgggaaggcc tatatataaa aatgaaaatc ctagggctgt atgtgaaaaa attttaaaca
    14101 aaatacacag aaaaaatata agcgaaaacg atatagagca aaattatgaa gtaattcagc
    14161 aaaaagaatg ggatatgtgt aatcactttg aagaatggat taaaactcag cctgataaag
    14221 aacatgcttt aaaagaattt tatgctaagt gtgggataaa atattgaatt atcaacaatt
    14281 agaatgcgat tactttaatc tttacaatca gtttcttagc gtggattttc aaatttcatt
    14341 atttgaaaaa gatcataaag gtttaattaa agattttata tttttttatt atcaaatttt
    14401 aaaacaaaaa gacttgagct acttgcttga ggtaagaaat aaaatttccc tgaaagttta
    14461 taattatatg caagagcact ccacttctcc aaaagattta agtcttattt gtctaagaga
    14521 aaataaacat attgaatttt ttcaaatatt ttacaaggct ctcgcttatt ttgtagcctt
    14581 tagaaaaaaa cttgatggag aacaaaaaat taaaaatttg atttcaaata tcaatgactg
    14641 ttttggctat catttcttga attctgactt taacaatctt caaaattttc aaaaaagcga
    14701 tttgttcacc ttacctgaaa aacatcttaa atattttcac ttcgccatga ttcatctttg
    14761 tttcatggtt ttaaatcctt taaattttaa agactctaat cggcatcttg ataaagcgat
    14821 taattatctt gtcgatggaa cttttgaaat ttatgagctc atctttaaag aatatttttt
    14881 attgttttca aaagataaag agctcaagga tgaacttaga aaattaaaaa aattagaatt
    14941 taaaattcta atgcaagaaa cttcaaaaat taaactactt aatcattata aagaattttg
    15001 cgaagaaata ttctacaata tagaacttga aaaaatcaca caaaattaat cctgtattaa
    15061 cattgttata gtttaataat aaaaattttt aataaggaaa aattatgctt ataacacctg
    15121 aaaaacttta taaacaaagg agaaattttt taaaacttgg agcgggtgct ttaataagtt
    15181 caagcgtgct tgcttctaaa ctatctgctt taaatttcac aagcgatact aatccaaaca
    15241 aacttgaaat cagcgatgaa gaactagcta caaattatgt caatttttat gaattttcaa
    15301 cagataaaag aaaggctgta tcattggcac aaaatttcaa tactcaaaat tggaaaatcg
    15361 atatcagtgg agaaatagaa aaacctttaa ctttaagcat ggaagatatt ttaaaatttc
    15421 cactagaaga aagaatttat cgttttcgct gtgttgaaac ttggtctatg gtggtacctt
    15481 gggtaggctt tgaattgcgt cgtttgattg aaatggcaaa acctacaagc gaggcaaaat
    15541 ttgttaaatt caccactctt ttagataaga gtcaatttcc cgatcaagac gctttatttc
    15601 caactataga ctatccttat gtagaaggac ttcgcatgga tgaagctatg catcctctta
    15661 ccttgcttgc agtaggaatg tataaaaaag ccttaaagcc tcaaaatggc gctccaatac
    15721 gccttgttgt tccttggaaa tatggcttta aaagtattaa atctatagtt aaaatagaat
    15781 ttactaaaga acagcctaaa tccacttggg aaagttacgc tccaagtgaa tatggttttt
    15841 atgccaatgt caatcctaat gtttctcatc ctagatggtc tcaagctaac gaaagggctt
    15901 taggagactt ctttaccaag cctactttaa tgtttaatgg ttatgaaaaa gaagtggcaa
    15961 gtttatataa aaacatggac ttgaaagtga atttttaatg cagacaaaat actttaaatt
    16021 tcttgcttat tttagcttta tcataagttt aatctatggc ttttatcata tcataaaagc
    16081 ctttgatttt gtaaaagaag cctatattta caccggaata tttgctttaa tctttttaaa
    16141 tttaagtctt ttattttctt tacttaaatt taaaaaaaca aaaaattatc ctaaaatttt
    16201 aggtattttt gcagcttttt ggacgatttt gcacttttta aattatttta tttttgatag
    16261 aaatgctcaa attttaaggc tttttgatga tatttcacat cgtttattag aagcaattgg
    16321 atttatcgca tttttaatca tatttttaat gcttttaagt tcttttaaaa tctttaaaaa
    16381 acttagtaaa atcagaaaac tgggatattt atgcttaatt ttggcaagtt atcattattt
    16441 tttaacccca aaaattccta tgttttggga atggagtgct ttaattatag ctttgtttta
    16501 ttttatagtt cgctatacaa aaacattaaa aagttaaaat ccaacaatct tacttttatc
    16561 aaaacttgaa tttaattctt tttgtatact ttctataaaa tcttgcattt taaaaacccc
    16621 atcttgtgat acagctactt tcaaagctgt attcttcact accattaaaa tttgtgctcc
    16681 gcttaattca taatttgata aaatatttat attaaaatct ttttcaaata atgctttttt
    16741 aggtagaaat ttttcccaaa ttttaagcct atctttaaaa tcaggttttt taaattctat
    16801 cttataatca aatcttcttg aaaatgcact atctaagctt tctaaaaaat ttgtcgtagc
    16861 gataatcaca ccactaaaac gctcaatttg ctctaagaat atattttgca tttgattatg
    16921 cattttatcg ctaccactac ttccatctac acgcgtactt aaaaactgat cagcttcatt
    16981 gagaagtaaa ataggacttt gtttgcaagt ttgcacgata tttttataag tatcaaaaat
    17041 ttttcttaca ttttgctcac tctctccaac ccatttgctc aaaattttag aacagtcaaa
    17101 actaagaaca ggttttttca ttgatttagc catagctaaa gctgacatag tttttccagt
    17161 accagcagga ccataaaaaa taattttagc ttctatattt ttattactct ttatacccca
    17221 agaatgaagt ctttctagga cttttttatc ttgttgtttt aaaatatttt ctaaaagctc
    17281 ttttgtattt tcaggcataa taatatcatt gatgtcagcg cttggttcta taagctcgaa
    17341 aatatcttga tcttttaaaa cactttcaat tttgattttt ttactttgtt ttggttcaaa
    17401 atttataatt ctttgtaaaa tttcatcgat aataaaaaaa cttttagaaa tatctccaaa
    17461 agcatttaaa tattcatcat actcgattaa gtttaaaaga ggagcatttt cttgtaataa
    17521 ttttttgttt t
//
LOCUS       DAQSLY010000023        16840 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.023, whole genome shotgun sequence.
ACCESSION   DAQSLY010000023 DAQSLY010000000
VERSION     DAQSLY010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16840
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.023"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..510)
                     /locus_tag="R2H98_000626"
     CDS             complement(<1..510)
                     /locus_tag="R2H98_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023526.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     SYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLKIE"
     gene            complement(513..827)
                     /locus_tag="R2H98_000627"
     CDS             complement(513..827)
                     /locus_tag="R2H98_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEE9023527.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            998..2422
                     /locus_tag="R2H98_000628"
     CDS             998..2422
                     /locus_tag="R2H98_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEE9023528.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEITPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            2479..2949
                     /locus_tag="R2H98_000629"
     CDS             2479..2949
                     /locus_tag="R2H98_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEE9023529.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(2950..3606)
                     /locus_tag="R2H98_000630"
     CDS             complement(2950..3606)
                     /locus_tag="R2H98_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEE9023530.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            3774..4136
                     /locus_tag="R2H98_000631"
     CDS             3774..4136
                     /locus_tag="R2H98_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEE9023531.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPDSGEIESHDIKEQ
                     TKQSLKNIGAILEENGISYDKVVKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEVIAQKG"
     gene            4140..5581
                     /gene="dcuC"
                     /locus_tag="R2H98_000632"
                     /pseudo
     CDS             4140..5581
                     /gene="dcuC"
                     /locus_tag="R2H98_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            5594..6758
                     /locus_tag="R2H98_000633"
                     /pseudo
     CDS             5594..6758
                     /locus_tag="R2H98_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            6768..8135
                     /locus_tag="R2H98_000634"
     CDS             6768..8135
                     /locus_tag="R2H98_000634"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEE9023532.1"
                     /translation="MTGISVFDHKLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            8144..9479
                     /locus_tag="R2H98_000635"
                     /pseudo
     CDS             8144..9479
                     /locus_tag="R2H98_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            9561..9785
                     /locus_tag="R2H98_000636"
     CDS             9561..9785
                     /locus_tag="R2H98_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEE9023533.1"
                     /translation="MTLDNLKDGQKAIIVNLSAQKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDASCVILRSDEAKTIEVNLI"
     gene            9782..11623
                     /gene="feoB"
                     /locus_tag="R2H98_000637"
     CDS             9782..11623
                     /gene="feoB"
                     /locus_tag="R2H98_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEE9023534.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGELVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIIILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWHLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKNEENLNDFNAQERAIEQSYLGQFGKGIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGFHIAKILLN"
     gene            complement(11620..13113)
                     /locus_tag="R2H98_000638"
     CDS             complement(11620..13113)
                     /locus_tag="R2H98_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEE9023535.1"
                     /translation="MGKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAVKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGASLVENYKKSFEKNYAFIEQ
                     NFDENPMPSKDFWKYLEMSFILVKGAFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(13117..13941)
                     /gene="fabI"
                     /locus_tag="R2H98_000639"
     CDS             complement(13117..13941)
                     /gene="fabI"
                     /locus_tag="R2H98_000639"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEE9023536.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGLA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(13945..14616)
                     /locus_tag="R2H98_000640"
     CDS             complement(13945..14616)
                     /locus_tag="R2H98_000640"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEE9023537.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTMGAKCDDIIVFPPSVAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEELIGAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYERLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLVSLTKAPLLYGGSVNENNIKEILSVKYCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(14613..15815)
                     /locus_tag="R2H98_000641"
     CDS             complement(14613..15815)
                     /locus_tag="R2H98_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEE9023538.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIIMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(15818..16816)
                     /gene="gap"
                     /locus_tag="R2H98_000642"
     CDS             complement(15818..16816)
                     /gene="gap"
                     /locus_tag="R2H98_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEE9023539.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIMDDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
BASE COUNT         5828 a         2811 c         2526 g         5675 t
ORIGIN      
        1 ttcaattttt aaattatgtg tattaatctc tttgcaaagt ggtaaaattg caaatttctt
       61 atctattata ataagatcac catcttgatc tatatttttt ccattatttt gaaaagaaac
      121 cttatcataa acataagagc taaataaaat ttgcgcatca aaacaaatgc cataaagata
      181 aattcttaaa agtcttaaaa gatcgacatt cttagatatt ttagtattaa aaattaagct
      241 ttttcttttt tgaaagtaaa aagcgtatgc attaagcttg atatttatat tttgaatctt
      301 accaaatgaa acatgcatta tatcatgtaa aaaatttcca aatatcattt ttaaactctt
      361 ggtatttttt gcatatgaaa gaggaatttt tagagcgcta tcaacgctcg cattatattg
      421 agttaaaaaa gtcaacataa gctcttgatt gtttaaatag cgataaattt gcggtataaa
      481 ttcttgctta tcatcaaatc caaataacat ctttaacctt tatagcaaga aaattcttta
      541 ttaagattaa aaattttaca atattcacaa tacacacaac ttacacttct ttttgcacaa
      601 actaatggaa ttttacgctt tttagcttca tttttgattt ttttcatagt attatgattt
      661 aaaaagcttg ttaacattac tatacattct gtatcacaag gaatcggctt gcgattaact
      721 ctattttcat tacgcgcatc ccagtgttct atttttttag cacctaaatc atgtaaaaca
      781 gctctaatag gagtgatttc atctgcacca ataaccaaaa ctgacataaa ttctcctttg
      841 tgatttttaa aatatatttt gataattatt attataatat aaaaaaacta aatttatttt
      901 gaaatttatt atcaataaaa tgcaattatt cagttaattt taatttttaa tagatataat
      961 ttaccaatta ataaaattta ttatttagga gaaaacaatg aaaaaattaa ctaacgattt
     1021 tggaaacatt atagccgata accaaaattc attaagtgca ggcgcaaaag gacctttgct
     1081 tatgcaagat tatcttttgc ttgaaaaact tgctcatcaa aatagagaaa gaattccaga
     1141 aagaaccgtt catgccaagg gaagtggggc ttatggagaa ataaaaatca ccgctgattt
     1201 atctgcttat actaaggcaa aaatatttca aaaaggagaa ataactcctc ttttcctacg
     1261 cttttctact gttgcaggtg aagcaggtgc agcagatgct gagcgtgatg tacgtggatt
     1321 tgccattaaa ttttacacca aagaaggaaa ctgggattta gtaggaaata atactccaac
     1381 tttttttatc cgtgatgcgt ataaatttcc tgatttcatt catactcaaa aaagagatcc
     1441 aagaactcat ctaagaagta ataatgctgc ttgggatttt tggagtttat gtcctgaaag
     1501 tttacatcaa gtaaccattc ttatgagcga tagaggaatt cctgcaagtt atcgtcatat
     1561 gcatggattt ggaagccata cttatagttt tattaatgat aaaaatgaaa gattttgggt
     1621 gaaattccat tttaaaaccc aacaagggat taaaaatctt accaaccaag aagctgccga
     1681 gcttatagca aaagatagag aaagtcatca aagagatctc tataatgcta tagaaaataa
     1741 agattttcca aaatggaaag ttcaagttca aattcttgct gaaaaagata tagaaaaact
     1801 tggatttaat ccttttgatt taacaaaaat ttggcctcat agtcttgtgc ctttgatgga
     1861 tataggcgaa atgattctaa acaaaaatcc tcaaaattat tttaatgaag ttgaacaagc
     1921 tgcctttagt ccaagcaata tcgttcctgg aattggcttt agccctgata aaatgttgca
     1981 agctagaatt ttttcatatc ctgatgcaca aagatataga ataggaacta attatcatct
     2041 tttgcccgta aatcgtgcaa aaagcgaagt gaatacttac aatgtcgctg gtgctatgaa
     2101 ttttgatagt tataaaaatg atgcagctta ttatgaacca aacagctatg ataatagccc
     2161 aaaagaagac aaaagctatc ttgaacctga tttagtctta gaaggcgtag cacaaagata
     2221 tgctccacta gataatgact tttatactca accaagagct ttatttaatc ttatgaatga
     2281 tgatcaaaaa actcaacttt ttcataatat cgccgcttct atggagggag ttgatgaaaa
     2341 aattatcact agagctttag aacattttga aaaaatttca cctgattatg caaaaggaat
     2401 taaaaaagct ttagaaaaat aatttttact tgccactttt ggtggcaaac taaagattat
     2461 aataattaag gaaaaacaat gacaactctt agtttagaag aagaaaaaag atttgaagag
     2521 ctttgcaaaa tggcttttaa ttttgcaaga aataatgaat gtgaaaatct taaaatcatg
     2581 atagaagcag gtttaaatgt aaatttaaaa actcataaag gcgatagctt gcttatgctt
     2641 gcagcttata ataattctta tgaaagcgct aaaatgcttt tagaaaaagg tgcaaaagta
     2701 gatgaaaaaa acgatcgtgg acaaacccca ttagcgggag tttgttttaa aggatactta
     2761 cctatgtgtg aacttttagt taaatatgga gcaaatattg atgaaaacaa tggtttagga
     2821 atgacacctt atacttttgc tattatgttt ggacgcaaag atgtggcaga atttttactc
     2881 aaaaaatcta aaaataattt tttaaagaaa ataagcctaa aaatactaaa atttatcaaa
     2941 aaattttagt tattttttaa atttcttcag atacctatag acactaggtt ctgaaatttt
     3001 taaaaatttt gctacgatag gaaccgcccc ttttatatta aaaatacctt tttcatatag
     3061 cttttcagca atttcttctt tttgagtaat gcttaattga taatcagaat ttaaataact
     3121 agaatctacg ctttgaacta aaatatcctc tatcgagtga cttaatgttt ctatacttga
     3181 atcattttga gaaaaactaa tatttcctaa aatatcaccc atatctccaa ttttttctaa
     3241 atcaatcatc ttgcatatta aatctctcat aatgctagta tcatgattga tacacaaaat
     3301 acctactaat ttgtcatgat ttttaataaa aaaagtagat cctctaatta attttgattt
     3361 tccaacaaga gccttataat cacataaaaa atctttttct aaatattttt tattttgcat
     3421 aagctcactt gcaaaagcag tcaagggaga atctaaactt cttccactaa tgtgactgtt
     3481 agcaattgct gcaatatagg ccccatcttc agtaattaca tgaaaaacta tctcatattg
     3541 ctcacctaaa acttctccta aaaaatatgt caactttata aattgttgtt tttgtccctc
     3601 atccataaaa ctgccttcaa taaaaaatta atataatatt aaattctact ctttatactt
     3661 taaaacattt cttaaaaata aaattttatt attatgataa taaactattg acaaattatt
     3721 attgtagtga taaaatgcat tctgcttaat ctatatttaa caaaggagaa ttcatgtcaa
     3781 actatccaaa ggccattggt ccatactcag cttacagaga agtaaatgga cttttattta
     3841 tatcaggaca acttcctatc aaccctgatt caggcgaaat agaaagccat gatatcaaag
     3901 aacaaaccaa acaatctttg aaaaatatcg gtgctatctt agaagaaaat ggtatcagtt
     3961 atgataaagt ggttaaaacc acttgctttt tagctgatat taatgatttt gtagcattta
     4021 atgaaattta tgctgaattt tttaaagctc cttatccagc aagaagtgct tttgcagtaa
     4081 aagatctacc aaaaaaagct aaagtagaga tagaggtcat cgctcaaaaa ggataaaata
     4141 tgctaggtat tgttttttct ttatttagtg tttttttact tgtttttatg ctttataaaa
     4201 aaatcaatgc tcacatggca ctgcttttaa gtggcttgct tttactttcc ttagctgcta
     4261 tttttggact ttctccacac attgttacca aagattcttt aaatctaggt ttttttgata
     4321 tttttcaagt ttttaatcaa accatgtcca agtacattag tagagcttgg acttacactt
     4381 atgactatag caggtttttc tgcttatatg gatcatgtag gggcttctta tgcacttttt
     4441 aaagtttttg aaaaaccttt aaaagccgta aaatctcctt atgttttact catagttgct
     4501 tattttatcg tgcaattttt agttcttttc atcccttctc acgcagactt ggcactttta
     4561 cttatggtta ctatgtatcc tatacttgta cgctctggtg tttcaaaact ttctgcctta
     4621 agtgtgattg ctatttgtca atatatcgat catggacctg gaagtggaaa tgtgatcatg
     4681 gcctcagaaa aagctgaagt tgatcctgca atttattttg ttcattatca actccctaca
     4741 accttgccta tcattatagc tgtaagtatt gcaatatatc tttgcaataa attttttgac
     4801 aaaaaagata attttgtctt caatgcgcaa gaaattgaaa aaagaactaa atgaaaatga
     4861 aggtaaagaa aaagaactta aaaagcctcc tagaatttat gcgattttac ctataattcc
     4921 tttggtttta atcctaggat ttagttccgt gcttgatagc atcttggttt taatgggaat
     4981 aagtagcgct gaagaagtta aagcagctgc tagcactgca attaaaatga atgttccagt
     5041 agcaatggtg atttcaactt ttgtggctat tatttttgaa atgatacgct ataaaagtat
     5101 agtagaaact cttaattcta tgatgatttt ctttaaagga atgggacatt tatttgttat
     5161 cacagtttca ctcatcgttt gtggtcaagt atttgcaagt ggtcttttat ctgtaggttt
     5221 tgtagatact ttaatagaat tttgcaaaaa tgcaggattt ggagttttgg ctattattat
     5281 cgctgtttca atcttacttg cggtttgtgc tttcttaatg ggttcaggaa atgcggcatt
     5341 ttttagcttt gccccactta tcccaaatat agcaaaacac tttggagttg aaactatcac
     5401 tatgatagca ccgattcaaa tcatgacggg ctttggaaga tgtgttagtc ctattgcact
     5461 agcgatctta gctatctcag ctattgcaag agtaagtcct tttgccgtgg ttaaaagaac
     5521 agctattcct atgcttgtag cggctattgt aaatgttatt atgacttata tctatcttta
     5581 aaaaggagaa aaaatgaact caaaaactaa acttattcat tgtggcagag gcgatcaagg
     5641 cgctgaagta agatcagtca atcctacact tatgcgtgca tcaaccatac tttttaaaga
     5701 tcacgcaact tggcaaaaat acagagaatt aagaaaaaca gatcgtgttt taagttatgg
     5761 atctagagga acaacaacca attttgaact tgaaaaactt atttgcactc tagagggtgg
     5821 ttatagagca caacttttcc caacaggact tgcagcatta gctatggtgc ttttaaacta
     5881 tgcaagcaaa gatacacatt ttttaatcac tgatgcaatt tatgggcctg taagaacgat
     5941 ttgcgaatta tttttagaaa aaatgggcat tgaaattgat tttttaaaag ctgatgcaag
     6001 tgatgtagaa gaaaaaaatc aaacctaata ccaagcttat cctatgtgaa agtccaggtt
     6061 ctatacttta tgaaatcata gatttaccaa aactttgcaa aattgcccat gcgcataata
     6121 tccctgtagc tattgacaat acttattcta gtggatattt tctaaatcct ttagaacttg
     6181 gagtggatat ttcagttatc gccgctacaa aatatcttag tggacactct gatgtaacca
     6241 tgggtatagt agtaatcaac gaaaaagaat ggaaaaattt tgacaaactt ccagaagctt
     6301 taggctttac aacaagccct gataatgctt acttagtact tcgtggtatg agaacactag
     6361 atgtaagaat gaaagctcat gaaaaaagtg ctgatgaaat tgtagagttt ttacaaagca
     6421 gaaaagaaat taaaacaatt ttctatccaa aactcaaatc ccactcaaat catgaaattt
     6481 tcatgcgtga tcataaaggt gcaaatggta tgattaccat agaatttgca gaaggttata
     6541 acaaagagga tgctattaaa tttgtagata aactagaata cttttcaatt ggtgctagct
     6601 ggggtggata tgaaagctta gccaccgtaa ctactccgcc tagaactgca acagacctaa
     6661 gtgcaagagg accatttgta agatttcata taggtcttga agatactaaa gatttaattg
     6721 ctgatttaac acaagctttt gatagtatta aaaaataagg agataagatg acaggaatta
     6781 gtgtatttga tcataaatta ttagcagact catggagcac gcaggaaatg cgtgctattt
     6841 tttgcgaaca aaaccgcata caaaaatggc tcgatgttga agcagcttta gcaaaagcac
     6901 aagcaaaact taaaattatc cctaaaaaag cagctgatga gattgcaaaa aaagctcatt
     6961 ataaatttat ggatatggac tttatctttg ctgaatttaa aaaaaccaaa caccctttag
     7021 ttcctactgt aagaggatta gaaaaagctt gcgataataa tttaggtgaa tatgtacatt
     7081 ttggagtaac cactcaagat atcatcgata cgggactggt tttacaattt aaagaagcaa
     7141 tgactcttgt aaaaagcgaa ttaaaagcta tcgcaaaagc cttagcgaaa ctagctaaaa
     7201 cccataaaaa cactgctatg atgggaagaa ctttagcact tcaggctttg cctattactt
     7261 ttggacataa agtggctatt tggttaagcg aacttgagcg tcattttgaa agaatacttg
     7321 aacttgaaaa aagactttat gtaggcagta tagtaggcgc tgtaggaact aaagcaagtt
     7381 taagtgatga gtgcaatgaa gtagaaaaac tcactttaga aaatttagga cttgatgtgc
     7441 ctaatatttc ttggcaacct gcacgtgatc gctttataga acttggtttt gtactaggca
     7501 atatcaacgc aacctttaac aaaatcgctc atgaaatttt aatcctttca cataatgaaa
     7561 ttgatgaagt tgctgaacct tttggcaaag gacaagtagg atcaagcact atgccacaca
     7621 aaagaaatcc tgcagtaagc gaaaatgcag ttacagtaag caatgccttt aaggcaaatt
     7681 tagccatttt aagcgatatt gaaagacatg aacatgaaag agatggtcaa gtttggaaaa
     7741 tggaatggaa gcttttacct gaaatgtttt taatgctttc tgtggtttta gcaaatatga
     7801 aattcgctct tagtgattta gaagtaaaaa aagacaaaat gcttaaaaat ttaaatactc
     7861 ttaatggttt tgttttagca gagcgtgtta tgtttgcatt aagcgatcat tatggaaaac
     7921 aacacgccca tgagattgtt tatgaaaatg ctatgctagg tatcgaaaaa caaaaaacct
     7981 ttaaagaagt tttacttgca gataaaagag tatctaaggt attgaaagaa aaagaaatcg
     8041 atgctttgct tgatgcaaca acctatgtag gatatgcacc aaaacttgta gatgaatttt
     8101 tggaaaaaat caaaaatagt gctattttaa aataggaaaa atcatgttct atagtgaaat
     8161 tttagcggat tttattttca atcttaaata tgaaaatatc cctaatacag ttgttcaaag
     8221 agctaaagaa cttatgcttg atagccttgg aacagctata gcagcaagca aagaagaatg
     8281 tgttttaaat gcttttaaag cttttgaaaa tttaagcaca gaaaaaaata ctcttatttg
     8341 ggtaaatgat caaaaattag atcctatata cgcagccatg ctagatggca ttgcttctca
     8401 tgcgttagat tttgacgata cacatacaga agcgattttg catgcaagtg caattttaac
     8461 tccactttgt ttaagttatg gttttcatgt taacaaagat gcgaaaaaaa tcatcaaagc
     8521 ttttatagta ggctgggaaa ttgcagctag agtaggcatt gcaagcaaag gtacttttca
     8581 taagcgtggt tttcatacca ctgctattgc aggaattttt ggaagcgtaa gtgcaagtgc
     8641 aatcttgcta gatcttaaca aagaacaaat catcaatgct ttaggacttg caggaagttt
     8701 tgcaagtggg attaatgagt ttttatccaa tggatctaat tcaaaagttt tgcatattgc
     8761 caatgctatt aaaaacggta ttatagtagc tcattttgct aaaaaccata tgagtggacc
     8821 tttgagtatt tttgaaggta gggataatat ctttaaatgt tttggcatag aagaagaatg
     8881 cgataaaaca gaacttaaca aagccttagg agaaatttgg caaactatgc aagaatcaag
     8941 ccttatccaa gttgtcattt tgctcatggg cttattgatt gtgctattgc tttaaaaaat
     9001 gatggtttaa aagctgatga aattaaaagt attcattgtt ttgtagatga agttcctgtt
     9061 tcttttatct gcgatccttt ggaagcaaaa tacactccaa atagtgctta tgaagctaaa
     9121 ttttccatgc ttttttaatg actctaggat tctttgatgg taaaatcact cttgaatctt
     9181 atgaaaattt aaagcgtgaa gaagtactag aatttgctaa aaaaatcagt tacgaaaaaa
     9241 gaaaatctca aggctttcca aaatattttc cagggcattt agaagccagt ttgcaagatg
     9301 gacgcacaat ccaaaaagat gtttttataa ataaaggtaa ttttgataat ccattaagtt
     9361 ttgaagaatt aaaagctaaa tttttagcca atgcacaaat ttaccttgat aatgctaaag
     9421 ctaacaaaat tctagatcaa atcatcaatc tagaaaattt aaaccacttt tctttttaaa
     9481 tattaatcct tctttttata agaaggataa tttcattaca cttttttatt ataatattta
     9541 ttattaattt aggaattaca atgactttag ataatttaaa agatggacaa aaggctatta
     9601 ttgtcaattt aagcgctcaa aaagaactca aaaatagact tttaagcttt ggatttatca
     9661 aaaataaaaa cttgaaaaaa attcactcct ctttaaaaaa tgccaccata atggtagagc
     9721 ttgatgcaag ttgtgttatc ctaagatctg atgaagctaa aaccatagaa gtgaatctta
     9781 tatgaaaaaa atcaaaatag cccttgtagg tcagcctaat gtaggcaaaa gtcttcttat
     9841 taatgcgctt tgcaaagcta atatgaaagt aggaaatttt agcggagtta ctatagaaaa
     9901 agcaagtgca aaaacttttt acaaaaacta tgaatttgaa gtcattgatt taccaggaac
     9961 ttattcttta gatggatata gtgaagaaga aaaaatcaca cgccattttt taaatcaaaa
    10021 tgactatgat gttattgtta atgttttaga tgctaccaat ttagaacgta atcttatcct
    10081 tagtgcagaa cttttaagcc ttaataaaaa aatgctttta gctttaaata tgtgcgatga
    10141 agccaaaaaa gaaggtatag agcttgacac ttctatttta agccaagaat ttcaaagtca
    10201 agttgttgaa atttcagcaa aaacaaaaga aaatttagaa cttttgctgc aaaaaattat
    10261 tattttattt gaaagtaaat ttattccaag atctcaattt tatactccgc tttgcgaaaa
    10321 aagtccggaa aaagaagatt tattatattt tattaatgaa ctttcaaaaa aaattatcac
    10381 acacaaaaaa gaagaaagaa atttaaccaa aaaaatcgat gccttactta tccataaatt
    10441 ctttggctta cctatatttt tatttttaat gtggctttta tttcaactca cctttagctt
    10501 agggcaaatt cctatggatt atatagaatc aggctttaat gccttaggtg aacttgttaa
    10561 aaacaatatt tctaatacct tcatcgcttc agctttagct gatgggatta tcgcaggtgt
    10621 tggtgctgtg atactttttt tacctaatat aataatttta tttttaggca tagctctttt
    10681 agaaaccaca ggctatatgt caagagtagc ttttttactt gatgggattt tacataaatt
    10741 tggtttgcat ggtaaaagtt ttattccgct aatcactggt tttggttgtt cggtacctgc
    10801 ttttatggct acacgcactc ttaagaacaa aagagataga cttttaactc tttttgtgat
    10861 caattttatg agttgcgggg caagacttcc tgtatatgtg ctttttatcg gtgctttttt
    10921 tccaagtgaa aaagcaggaa attatctttt tggaatttat attttaggtg cgattttggg
    10981 actttgtgct gcaaaatttt taagaatgac agcatttcgt ggacttgatg aaccttttgt
    11041 tatggaaatg ccaaaatatc gtatgccaaa ttggcattta gtttggttta tggtttataa
    11101 taaagccaaa atgtatctta aaaaagcagg aactttcata cttttagcct ctttgctcat
    11161 atggtttgct agcaattttc caaaaaatga agaaaattta aatgatttta acgctcaaga
    11221 aagagctata gaacaaagtt atctaggaca atttggcaaa ggcatagaac ctatttttaa
    11281 accccttgag ttagattgga aattaagcgt atctttaatc agtggtttgg ccgctaaaga
    11341 agtgatgatt tcaactatgg gagtacttta ttcactagga aaagatgtag atgaaacaaa
    11401 taatgattta aaaggaatta ttgccaaaaa tatacctata ccaagtgcag tggcttttat
    11461 tttatttgta atgatttata atccctgctt tgcagcaact atagtttttt caaaagaaag
    11521 tggaaagcta aaatatactc tctttctctt tctttttacc tgcacaagtg cttatatagt
    11581 agcttttata gggtttcata ttgctaaaat tttattaaat taacttgctt ttaatgatga
    11641 aattttagta atattatctt caaaagcttt taaaatacta taagcaatac cttcaaaatc
    11701 aagcccaccg caaagataga ttaaagtcat acgaaaagat ttactcacat caagctttgg
    11761 tttttcagca ttcatattta acttaaaatc ataaggactt gcatgtttaa aagcataatt
    11821 ttttgccgca attaaaaaat cattcttatc ttttaaaaat gcgcctttaa ccaaaataaa
    11881 actcatctca agatatttcc aaaaatcttt tgaaggcata ggattttcat caaaattttg
    11941 ttctataaaa gcatagtttt tctcaaagga ttttttataa ttttctacaa gcgaagcacc
    12001 taatttattt ttagctatat tttgtaaaat aagttttata ttgctttcaa attcaaaatc
    12061 tatttgttct aaaattttaa tttgctcttc tagaaaaaat tcttgtttta actcttcatt
    12121 gcaaagttta gcgtaagaaa aaatatttgc cataggtttt tcataattcc caaactcatc
    12181 ccaaaaattt ttctcactac aggctataca accatgtcct gcagccactg gccaagaagt
    12241 tttagcatta aatttcactt taggacagtt gttgtaagta taaggtcctt tacaacctat
    12301 cttaaataaa caagctccat tctttacagc ttcatcgtca aaatgttcag caaaaatccc
    12361 actttcaaat ttcgcctttc tttcacacat atcatgcaaa catttaccat aagcccacac
    12421 aggacgattt tgctcatcaa gttcaggcaa aactccaaat aaagcaaaaa aacttaaagt
    12481 cgcaatgata tttatatcac ttggaggaca acctgggata tttactactt tttgacttaa
    12541 gacttcgcta ataccacaag ttttactagg atttggataa gcagcctgaa taccaccata
    12601 acttgaacaa gtacccactg caaagatagc cttggcttta gcggctagtt tttctaaaat
    12661 ttcatagcca ctctctcctt gcgctcctat agtaagaaaa aaggtatcaa tggctgcaac
    12721 accaccttca accgctaaaa taaaatcttc ttctaaaaca tactctaaaa gctcttcagc
    12781 cttagtgcca tttgccgcca ttaaagtttc atgatattct aaagaaaaaa aatcaaaaat
    12841 aagctcatca aaacttggca actcagaacg caacaaactc tcgctacacc ctgtacattc
    12901 acaaagatga agccatacta attttgtttt aggtgcgatt tgaaaaaatc tttgagcaag
    12961 agctggaatt tcattgccta aagataaatg cctagcaaga atttttacac tttcttcatt
    13021 gataaccttg tcctctttta aagtagaatt ctcaagtttt ttaatgcgat cttcaagtat
    13081 attttttaat tcttcattgc taagctttcc cattttttat cctttttgat tatcccaaca
    13141 aagaacagtt tgcccttctt catttttttc aacatcaccc atacccatga tgttatatcc
    13201 tgcatcaaca taatgtattt cacctgtaac accatttgct aaatcgctaa gtaaatacat
    13261 agccgaattt cctacatctt ctatactaac attgcgtttt aaaggagaat tgatttcatt
    13321 gtattttaaa atcattctaa aatcccctat tccacttgct gctaaagttt taataggacc
    13381 tgctgaaata gcattaacac ggattccttt tacccctaaa tctcttgcca aataacgcac
    13441 agaactttca agtgcagctt ttgctaaacc cataacatta taatgaggca catatttaac
    13501 cccaccaaga taacttaaag tcaaaatcga acccttatct tttaaaatag gtaaaaccgc
    13561 acgtgttaaa gaaagtaaag aatacacaga agtttgcata gctatatcaa aagcttcttt
    13621 tgaagtttct aaaaaagaat tttctaaagc ttcttttgga gcaaaagcaa ccgcatgtac
    13681 tacaaaatca atctcaccta aatctttttt gattttttca gcgatagaat ctaaatgctc
    13741 gttattattt acatcaagct cataaacaaa attagaatta aactcttgtg ctataggttc
    13801 tacgcgtttt tttaaagcat catttaaaaa agtaaaagca agctcggctc cttgatcaaa
    13861 acatgctttt gctatgccat aagcgataga tttattattc gcaaccccta caataaggcc
    13921 ttttttaccc ttcataatca tcttttatcc tttgattaat tttataaaat tttctacttt
    13981 taaagctgca gagcctatca aaactccacc acaatatttt acacttagaa tttctttaat
    14041 attattttca ttcacgcttc caccataaag caaaggcgcc ttggttaaac tcactaaaaa
    14101 ttcaagcact ttagcgatat ctgtactttg tgcactcact cccgttccta tagaataaat
    14161 aggctcataa gcgataatga gtctttcata atttaaatca ataatttcaa gttgtttttt
    14221 taaaaactct aaagtcttgc ctgaattttt tgtatctaaa ttttcaccta tacaaaaaac
    14281 aattttataa ccatgctctt tagcaaaatc aaatttagct ccaataagct cttcatctcc
    14341 taaagctctt ctttcagaat gcccgattaa aacacatttg atcccaaatt cgtccaaatg
    14401 ctcttttcca agctcgcctg taaaagcacc attaacacaa ggataaaaat tttgggctcc
    14461 ttgtatgaag ttattttcat tttctaaaaa tgctacacta ggtgggaaaa cgataatatc
    14521 atcacatttt gctcccatag ttttatttaa aatttcagca taaattttaa aacttgctct
    14581 tgtgtgattg cattttaaat ttgcagcaaa gatcattcat tttccttaga tcttaaagct
    14641 tttacacctg gaagttcttt gccttctata agctcaagag aagcaccacc tccagtagaa
    14701 ataaaagtca tctcatctgc atcgcctgcg cgcgcaacca catcagccgt atcaccgcct
    14761 ccaacaacag aagttgcatg tccttcgctg atataatgac tcattttaat actgcctttt
    14821 gaaaatttat caatttcaaa aacacccata ggtccattcc accaaatcgt ttgcgcatca
    14881 gaaatcacct ctttaaaaag tctcacactt gcaggtccta tatctaaacc catccaacca
    14941 tttggaattt cttgcgctgg aacaaatttc atcggcgcat cttgtgagca cgcaggagcg
    15001 gctacaacgt ctactggaag ataaattttc actcctaaat ttttaccctt ggtaagaatt
    15061 ttattagctt cttctaaaag ttcttcttct aaaagtgaat ttcctatatc ataacctaag
    15121 gcttttaaaa aagtaaatgc catacctccg cctatgatta atttatctac ctttggtaat
    15181 aaatttgtca atgcttgaag ttttccactt acctttgaac ctccaacaac agcgacaaaa
    15241 ggacgtgctg gatgtttgat aagattgctt gcaaaatcaa tttctttttg gagtaaaaat
    15301 cctgcacctt tgtgtttttc atcaaagaat ttagtaatag cctccacgct agaatgtgct
    15361 ctatggcata ctccaaaagc atcattgata taaacttgaa ccatagaagc aagttctttg
    15421 gctaaatttt catcattttt agtttcgcct ttttcaaaac gtaaattttc aagaagtaaa
    15481 atttcacctg cttttaaatt catagctttg gtttttgcat cttcgccgat aacatctttt
    15541 gccataataa tttctttatc taaaagtcta gcaagacgct tagcaacagg ttctaaagaa
    15601 tacttggaac taatttcttt tggacgccct aaatgagagg ctaaaatcac actacaacca
    15661 ttatccaaac aatatcttat cgtaggaata gctgatctta tgcgtctatc atcagtgata
    15721 tttaaaaaat catcttgagg aacattaaaa tcacatctta taaaaacttt tttcttagct
    15781 aaatcaatgt cttttataga aataatatca ctcatgatta agccttattt gcaatatata
    15841 ctgccatatc taccagacga cttgaatagc cccattcatt atcataccaa gcaattacct
    15901 tgataaaatc atccataatc acttgagtta aatcacttgc tacaatggct ccataagaac
    15961 aagtgataaa atcgcttgaa actctttcat catcatccac cattaaaatg ccttttaaat
    16021 ttgtagctgc agcttttcta aaagcttcat tgatttcatc tttgctgact ttacggctta
    16081 gctgcgcagt taaatccacg cttgatacat caatcactgg cacacgcata ctttgtccgt
    16141 gaagcttgcc attaagttca ggcataacaa gtttcatagc ttttgctgcg cctgtagaag
    16201 ttggaatgat attttgcgct gcggcacgag aacggcgttt atctttggcc ttagcatcaa
    16261 taatactttg tccatttgta taagcatgta ttgttgtcat aagtcctttt tctataccaa
    16321 aattatcttg taaaacacga caaacaggac ctaaacaatt tgttgtacaa cttgcattag
    16381 aaataatgct ttcacccttg taaagttctg aatttactcc taaaacataa gtaggtgtat
    16441 catcttttgc aggagcactc atgatcactt tttgcactcc catatctata aattcttgac
    16501 attttgccat agttaaatgc gctcctgtac actctaaaac aatttgtgcg ccgtgttttg
    16561 caaagtcaag atcttttaca ttgcgacttt taaatacttt gattttttta ccatttacca
    16621 ctaaatcatc gccttcacta tcaacactgc ctttaaattc accatgtact gtatcgtatt
    16681 taaaaaggta ttttgtaagt tcaatatccg tagtatcatt tatcgccaca agctcaatat
    16741 catttctttc taagatgatt cttgcaacac atctgcctat gcgtccaaaa ccatttatag
    16801 caacttttac agccatttaa tttccttttg caaaatataa
//
LOCUS       DAQSLY010000024        16129 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.024, whole genome shotgun sequence.
ACCESSION   DAQSLY010000024 DAQSLY010000000
VERSION     DAQSLY010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16129
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.024"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            152..681
                     /locus_tag="R2H98_000643"
                     /pseudo
     CDS             152..681
                     /locus_tag="R2H98_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(706..1632)
                     /locus_tag="R2H98_000644"
     CDS             complement(706..1632)
                     /locus_tag="R2H98_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEE9023540.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(1629..2615)
                     /locus_tag="R2H98_000645"
     CDS             complement(1629..2615)
                     /locus_tag="R2H98_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023541.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(2605..2967)
                     /gene="dksA"
                     /locus_tag="R2H98_000646"
     CDS             complement(2605..2967)
                     /gene="dksA"
                     /locus_tag="R2H98_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEE9023542.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(2979..3428)
                     /locus_tag="R2H98_000647"
     CDS             complement(2979..3428)
                     /locus_tag="R2H98_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEE9023543.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(3430..4272)
                     /locus_tag="R2H98_000648"
     CDS             complement(3430..4272)
                     /locus_tag="R2H98_000648"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEE9023544.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(4281..5003)
                     /locus_tag="R2H98_000649"
     CDS             complement(4281..5003)
                     /locus_tag="R2H98_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEE9023545.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(5003..7222)
                     /gene="bamA"
                     /locus_tag="R2H98_000650"
     CDS             complement(5003..7222)
                     /gene="bamA"
                     /locus_tag="R2H98_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEE9023546.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVSITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDNTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            7299..8126
                     /locus_tag="R2H98_000651"
     CDS             7299..8126
                     /locus_tag="R2H98_000651"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEE9023547.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIAILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            8206..9579
                     /locus_tag="R2H98_000652"
     CDS             8206..9579
                     /locus_tag="R2H98_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEE9023548.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEAIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            9579..10463
                     /locus_tag="R2H98_000653"
     CDS             9579..10463
                     /locus_tag="R2H98_000653"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEE9023549.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDVPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            10502..10903
                     /locus_tag="R2H98_000654"
     CDS             10502..10903
                     /locus_tag="R2H98_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEE9023550.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            10912..11790
                     /locus_tag="R2H98_000655"
     CDS             10912..11790
                     /locus_tag="R2H98_000655"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEE9023551.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            11815..12072
                     /locus_tag="R2H98_000656"
     CDS             11815..12072
                     /locus_tag="R2H98_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEE9023552.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            12059..14644
                     /gene="infB"
                     /locus_tag="R2H98_000657"
     CDS             12059..14644
                     /gene="infB"
                     /locus_tag="R2H98_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEE9023553.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEELKIEKENA
                     KEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVKNSNDISINNE
                     ERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDISLDDEDEVVL
                     PDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSKKIEKKEVEEV
                     GSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIEILAAEFGIEI
                     NIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYIRKSRVASGEA
                     GGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVVAADDGVKPQT
                     KEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGSYEFVGVSAKT
                     GMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATIIVQNGTLTVGS
                     TVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIAVKTDKEAREY
                     ANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSLEALKASLEKL
                     RNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERAKDKGVEIKTY
                     NVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCMVTEGVINRGA
                     KIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVGDYIESYKEVE
                     EQASL"
     gene            14641..15003
                     /gene="rbfA"
                     /locus_tag="R2H98_000658"
     CDS             14641..15003
                     /gene="rbfA"
                     /locus_tag="R2H98_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEE9023554.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            14993..15415
                     /gene="rimP"
                     /locus_tag="R2H98_000659"
     CDS             14993..15415
                     /gene="rimP"
                     /locus_tag="R2H98_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEE9023555.1"
                     /translation="MNLEALCKEAGLSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKIATNEKEKFE
                     AKIIAVDDENITLENLETQEKTTINFNDIKKARTFVEW"
     gene            15462..>16129
                     /locus_tag="R2H98_000660"
     CDS             15462..>16129
                     /locus_tag="R2H98_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HEE9023556.1"
                     /translation="MWNLDEKKLQEMLDGFLNFQKVWTLEKVKNMTLEEYTNIKKDNP
                     NRDDFTFWIESKLDNLGSIWGGSAFKFGIYRRNDESQKESSSGRLYSQNYAWIAKYGN
                     NENEAFNNIKEKIIQIIQASQDNNLKAIEKIDFGDAIKWKIAFHYQDVKNIKIVNIFS
                     KNVLDLISLNEFKEKLKIYQIHKKLLENKNSSLVKMIENIAIPLWNKYGMDSQNYIDK
                     MKNL"
BASE COUNT         5764 a         2182 c         2753 g         5430 t
ORIGIN      
        1 atttcctcta agctctttta atagatattt tggaaacaat cctttgcaaa cacttaccaa
       61 aataagagat gaaagtattg aaaatggaaa tcccgagctt acaaaaaaac aaagagaaga
      121 attaggtaat gatttgatag atttgtataa gatttctaaa aaattcagcg ataaaataga
      181 attagtcgag ggttcaatag aagataagct tagaaacaat gaattaccag aatcagaagt
      241 taaaaattta tttcaatgga tggatgaaaa tgctaaacac cctcgttgga tgcatattga
      301 tggcgtgagt tatgatgaag cttatgttaa aatttttcac acaagcaaaa gtatagatga
      361 atttaaagaa aaatatcttg agcttcaaaa aaatattttg ttgattttaa caatattgat
      421 tcatcgcaga aaaaactgca agaaacttca gaagaagaca aaaaagcttt caaacctata
      481 caagtagaaa gtaaaagcga aacctacaaa gatgataata caagaaatga gcttttaaga
      541 aaactactag aaactaaatt tggcacaagc gatgagctag aaattctttt tggtatgaat
      601 tttagcaatg ataatgcagg ggaatttaat aaaattcttt ctcaaaacac ttcagcaaaa
      661 attatagata ttaaggctta agatttttta aattataaaa atcaatcaag ttaaactaaa
      721 aaattcttct attttttttc gcatttcttc gacattgtcg atacgattaa cggtatctct
      781 aaaggctgaa gcgtctttat gccctttaga atactcgtgt aaatgcttgc gaaatatact
      841 tacgccttga tctttgtagt gttttatcat ttcatcaaaa tgagtgagta tgatttcttt
      901 tttgagtttt tcatctacac ttttaccgct tttgatttca taaaatatcc aaggatttcc
      961 tacgcttgca cgccctatca tgagtccatc acattttgtg attttataaa cttctttagc
     1021 gttttgtgcg ttaatatcgc catttgcaat cacaggaatt ttcacactcg ctttagcact
     1081 agcaatggat ccataatcgg cttttccgct ataaagctgt tttcttgtgc gtccgtggat
     1141 acttataaaa tccaccccca agctttcgca aattttagcc attttttcag gatatttttc
     1201 attaaatcct agtcgaaatt tcacacttgt aaggcttttt ttattgtttt ctttaatcac
     1261 tcctacaaga tttttaaaaa gctctaaatt ttctagcaaa gcactgccag cacattgttt
     1321 aacaacttta tttacagggc aaccgcaatt aaaatcgatc ccatctacaa aatccatttc
     1381 atttagcatt tgcactgctt tttttagcac ttctttatct ccacctgcaa tttggactat
     1441 atagggattt tctaattcag ctctttctag catatgtaaa gttttagaac tttcataaac
     1501 taaggcatta gaacttatca tttcacttat ggtaatatca gcaccaaatt tttttactac
     1561 attacgaaaa ggcagatctg aaaaacctgc cataggggct aaaaacaggg gttttttgct
     1621 aaaatctatc attgtatgag ttgatttaga tcgattttga tatttttttc acgcaaggct
     1681 aaaaaggctt taaaatcatt aaatttttta tcatcattgt gaatttgttc tcttaactca
     1741 tctaaaagtc caaattcagc caaaagatat aaatatgctc ttaaagcttc gcttttttca
     1801 tttttaattt tgttaaaaat tcctaaaata gcatcaggat ttaaaagttt agtacttagt
     1861 tttgctgcat taagatagtc tttttcgctt aatatgttgt gtgaaagtaa aacttcatat
     1921 tctgctacac taagttctaa atttccttct ttaaaacgct tgataagtgt gagaacttca
     1981 gaaggctttt tagggatttt tacattttta atttgctcat aactagcttt ttctataaga
     2041 gtgttaaaag caatttcttc aaattcatct ttgatttcat taaggttttt aagtttgtta
     2101 taggcataat ttgcatcatt tttgagatga tttttttcat tttgcaaata taaaacattg
     2161 ttattttcga gtttaaattt gctaaggtta aaaaattcgt ttttatttaa accatcaata
     2221 agatctaaaa tttcattgat tttatttgag tgtggaattt tttcatgtgt ttttatggtt
     2281 ttaaaaagtt gtgctacaga tctaaattct tttgtttgaa aagtggtttt aagatctttt
     2341 tcaaggagta aatcttgagt ataagcttca aatttagctg catctttaaa aaaatgctta
     2401 aattttaaat aacgcaaaaa tccataaaat gctatgtgta aaacggctaa aatcatataa
     2461 ataaataaag gaataacaag ccatatcata ataggtagtt caaaggtata agtgctgata
     2521 tttagagtat agcttcctag ttctagatgc caagcaaagg caaaaataag tgctatataa
     2581 ataaaacttg caagtaagaa gagtttaatt ttcatgtttt tttccttgtt ctgcaatttg
     2641 acggcaagtg atacaatatc ttgcgtgagg tttgactttt agtctttgag agtcgatttc
     2701 atcatcgcaa gattcgcaaa ttccataagt gccgtttttg attttatcta aagaatcttc
     2761 gatttctata agttcttctt tgagattggt gctgatagca aagtcaattt gagatcctgt
     2821 ttctatgaca gaaaaatcca cactatcgct tgggacgcta ttgtgaagag cttcgatttc
     2881 atttgaattg ctttgcaaat tttctaagat ggcttttttt ctttcttcta aaatattttt
     2941 gaaattttgt atttcatttt ttttcatttt aaaactttct atttgtgata agggtgattg
     3001 ttgttgatgc aaaatgcacg ataaatttgt tctaaaagta aggttttaac aaattgatgt
     3061 gctaaagtaa gtttgcttaa tgatagtcta aaatccaaac tttgattaaa ttcttctctt
     3121 aaaccataag cacctcctat aaaaaaactt aattcatttt tatcttggat gagttttgca
     3181 aattctatac ttgtaagatc tttccctttt tcatcaagag cgatacaata gcctttttta
     3241 taaggcataa aagcttcttc atagcttttt tttgcttcta tggcatttaa attttgagct
     3301 aaggctattt ttttattaaa aacatttatt tcttttaaag tggcgtattt ggagatgagt
     3361 ttagagtatt tctcactaca agttttaaat tcatcacttt tttgaataca aaagatatta
     3421 acttgcaaat tattttccac taaaaaattt tagtacatcg ctaagatatt gtttttgttc
     3481 tcctctttca actatggcat ctataagtcc atgttctaac aagaactctg ctttttgaaa
     3541 accttcaggt aaatctgctc ctatagtttg tttaataact cttgcaccag caaaacctac
     3601 taaagcttca ggttcagcga tgattaaatc tccaagccaa gcaaaagaag cacttactcc
     3661 acccatagta ggatcggtta aaatgctaat ataaggaagt ttttctttgc taagaagttt
     3721 aagtgcagca ctagttttgc tcatttgcat caaagaataa gtactttctt gcattctagc
     3781 tccaccgctt gcacttacga tgacaagaga agttttgctt gtgatagctc tttgtatagc
     3841 tctaacaatt ttttctcctt caacagaacc taaagatccg cccataaaag aaaaatcaaa
     3901 tacaacaagt tgggttttta aaccattgat ttcacattct ccactgatga cagaactttt
     3961 tctacctgtt ttactttcac cttcgctaag gcgtttttta taggatttgc tatcaacaaa
     4021 ttttaaagga tctatagctt ctaaatttgc atcatactca ataaaactgc cttcatcgct
     4081 taaaagttta atacgttcat cagctgaaat tctcatgtga taattgcatt taggacaaac
     4141 attaaaacaa gattctattt ctttataata catcaaagca tgacaacttt ggcactttac
     4201 ccagtgattt ggcgcttctt taacgctagg ttgttgtctt cttatttttg aaaaaatatc
     4261 tgcaaaattc atatattcac ctaattattt tttaaaaatt ctaagattat atcaaaaatt
     4321 tttttgtctt ggcttaggag aaggaaattt tcattttttt ctatatataa attttgatga
     4381 attgctaaag cagctgctgt atcaaaaatt cgtgtttttc caagaattaa tacaaaacta
     4441 aaatacgaag cataagcaag acttaaggct gttgcaccca aagagcgaaa ttttaattga
     4501 ttttttgtta aaaaatcgag aagttctgga taaagtgaaa ttttttcaac tatacctatt
     4561 ttagaaaata gattaggtgt taagggtgag tattttggat cggaaagatt ggatttaaaa
     4621 gcttgtttgt tattaaaagc aaaaatttct tgactgacaa gattgcaaac aaaagcgctt
     4681 tttgcctgat ctttttccat aagagctata gaagttccat aaaatggtat tttagaaaca
     4741 aaatttgaac ttccatccaa aggatcaaga atcatttgtt ttgggctagc ttttccgatc
     4801 aatccgcttt cttcagaaaa aatttgtcca aaacaactaa gatattttat gaaaatttgt
     4861 tcacatttta agtcaagctc atagccttga tttttatcat agcctaattt agagcaaagt
     4921 ttaagatcat tttgtgggat attgtttaga tacttgcgta tttgcaaatt tgcattcaag
     4981 caagcatcta aaaattcttt cattaaaagc gtgttccaag attaaattca aaactattag
     5041 tatcatcacc ttttttatca ttaagaggtt tggcaaatac aagttgtaaa ggtccaatag
     5101 gtgtaatcca ttcaatgcct atacctgtac tcattctttt tatttcatct aaatttttac
     5161 gccctatcat accataatca aaaaacacgc taccacgaag tttgattcta tcaatcaaag
     5221 gaaaactaag ttctacggaa ttggcaaaag ctatagttcc acctacttca tctccccatt
     5281 gatttttagg acttactgtt ctgctttcaa aaccgcgtat cgatctaata ccacctaaat
     5341 aaattctttg gttaattggt aaataacctt catcccatac tttataaaaa ctcgctttat
     5401 agcgataaat aagatcatat cctatatagt cttgcaaacc ttgataaaag ttaaatttag
     5461 agcttgatga aataaattct tgatctccgc caagtccagc gtattctaaa ctagttgaag
     5521 caataatacc tgatcgtggc agataataat catctgtatt gttaaaggtg attgctggag
     5581 ttatagagct tttaatactt ttgccaagtt catatcctgt tcttaaaaga gttggactta
     5641 agtgatatat atcgctttgt tcaagattat aagttaagct tacattatag tatcttgcaa
     5701 attggcgtcc aactgttata tcaaagccgt aatttttttc tgaataatta tcccattcat
     5761 agtcatttga ataaagtgtt ccacccagac tatattgact atcaagaacg cgtggattta
     5821 cgagactaat ccttcccgat aaagtatcat cgcttttatc tacgcttaca gagcttttta
     5881 ttcctgaacc aaagatattt gtatccgata aagaagcgtt aagcaaaata ccatcgcttg
     5941 atccatagcc aatgcctcca gaaatagctc ctgtagaagc ttctttaaca tcaacaatca
     6001 aatcaatatg tgtattatca actttttctt ctttgatatt tacatcgtca aaataagaag
     6061 ttctttttaa agcatttttt gactcgctta agtctgttct attgtataaa ttaccttctg
     6121 ttatatataa ttctcggcgt atgacgcgat ctacggtgcg tgaatttcct gaaataataa
     6181 catttcttat ataaacttta tcgtgaggga ttactttaaa tacaacggtg gcttcttgag
     6241 tttgatcatt tttttgaata tcaggataga cttctacaaa cgcataaccc aaatcagcac
     6301 tttgtgtttc tatggtttta acatcttttc taatgtcttc gatattgata gttttgccag
     6361 cgcttgatct taaatctttt acggtttgtg cattttgctt atcatcaaat aaaggatttt
     6421 ctatgcttat acttttaatt ttataaggct ttccttcttt gataaaataa gtcaaatttg
     6481 cttgataagt atctgtgtag gttttaagat aaggggagga tacttgaaca tctaaatatc
     6541 cttttttcat atattcatca gcaattcttg aactatcgtt actaagttca aaaactttta
     6601 attttccatc attgcgtccc cacatccatc ccataaattc tttttctttg ttaacaacag
     6661 caggttctat atcagaatat gaaaatttct ttgctccact taaatgaaca ttatcaataa
     6721 tgatattttc accacgattt actataaatt caagctctag tccatcagta ttttctaaag
     6781 tctttttttt gtattctaca atagtatcaa aataactttt tgcttcataa taagctttaa
     6841 tgcgttcaat agcttctttt atacttcctt catcaagtag tgtacctctt ttaatcccta
     6901 aaatactttc aacttgtttt ctatcattgg aagctatacc tgttatacta acctttgcta
     6961 tagttggttt ttcagtaact ataatttcca aaattccatt gttgttttct actgcaatat
     7021 tttcgaaata attttgttta taaagattaa gaatagcagt gttgattttt gcaggattta
     7081 tttcctcgcc tattttaagc cccgcgatat ttatagcgct tgtgttcgat aaatgattta
     7141 atccgataaa tttaatatct ttaatggttg ctgcattggc catagcaact aaagcacaaa
     7201 tactaataag atgttttttc attgattttt tacctaaagc tttattaaaa gctgtataat
     7261 agcaaaaaaa atttaacaaa aaaactaagg tagaaagtat gaaaatagca attatagggc
     7321 ttgggcttat gggtggatct ttagggcttt gtttgaaaga aaataagctt atttcttgtg
     7381 tttatggtat ggatttaagc aaagaaaatg aaaaagatgc cctgcaatta ggtcttattc
     7441 atgagcttat agaatttaaa gatttagctt tatgtgatat gatttttgtc gcaactcctg
     7501 ttgatgctat tatagcaatt ttgcaaaagt tagttgattt gccttctaat gtaacaatta
     7561 tagagcttgg aagtacaaaa agaaaaatta tagaaagttt gcctaagaat ttaatcaaac
     7621 aaactctttt tgctcatcct atgacaggaa ctgaaaattc aggtccaaaa gcagctttta
     7681 aagagcttta taaagatgca gtttgtgttc tttgtgatag tgaaatagct gatgatttac
     7741 atcaaaaaag agcggtagaa attttttctc atttagggat gaaaattgtt tttatggata
     7801 gtaaagccca tgatcatcat gctgctatta tttctcattt gcctcatgtt ataagttttt
     7861 ctttggcaaa ttttgtaatg aaggaagaag ataaaagaaa tatagttcat ttagccggag
     7921 gatcttttaa aggtatgagc agaattgcca aatcatcgcc acaaatgtgg gaaagtattt
     7981 ttttacaaaa taaagataac ttattaagtt ctattgattt ttttcaacaa gaattagaga
     8041 gatgtaaaca aatgatacaa ttagacaaaa acgatgaatt aagagaatgg atgaaacagg
     8101 ctaataccct aagagaaatt ttataaattt gctagatatt tactgaaaat ataatagaat
     8161 ttatattaaa agcaacaaaa acattgaaaa tttttaagga aggttatggc aaaaagaaaa
     8221 ggcaaaactt atttatctgt tttaatttta gttttaatag caattttgat tttttttatt
     8281 tcaagattaa gtatttttga aaaaaatcct cctcaaattt taatgccaga tgttgtatat
     8341 actgatctta aaaaacctat tttagtgcat attaaagatg atgaaagttc tatcaaaaac
     8401 gtacaaatta tattgcataa agacgacaat actagtgcaa tggttatagc agatgaaaag
     8461 atttctaatt taaaagatat taccttacaa gttgctttgc caaaatttgg ttacaaagaa
     8521 aatgtaaaat cttttgtttt ggaggcgata gctaaagatt ctagtttttg gaattttttt
     8581 agtggcaatg aagcaagaaa acaaattgcg gtattagtag ataatacggc tccaaaaatc
     8641 aatatcataa gcaattctta ccaaatcgag caaggtggtg ctggggcagt tgtttttaag
     8701 gctgatgatg ctaatttaga taaggtgtat atagaaacaa ataaaggtaa aatctttaaa
     8761 gccacacctt atgtaaaaga aggatattat gcggctttga ttgcttggga tgcaagagat
     8821 gaggaatttc gtgcatttgt tatcgctacg gataaagcgg gcaatatttc aaaagaacgt
     8881 ataaggtatt attttgttaa tcgtaaatat cgtgtttcaa atatcaatct aacggataaa
     8941 tttttagatg gaaagattga gaatttagca aatcagtacg ctccaaaaga taataatctc
     9001 aatcgttatg aaaaatttaa gtttgtcaat gaaactttaa gaaatagcaa tgaaaaactt
     9061 atccatgaaa tcacttcaaa agtacctgag gaaaaaattg ataattttga tttgaattta
     9121 tttttacctc ttaaaaatgg tatgaaagta gcggattttg ctgatcatag gtattattct
     9181 tataatgggc aatttgtgag tgattcttat catatggggc ttgatctagc aagcgtagca
     9241 caagctccta tcataagtaa taacgcaggc aaggttgttt ttgctgctga aaatggaatt
     9301 tatggtttaa atttaattgt ttatcatggt tttggagtat atagtcttta tgggcactgt
     9361 tcttctaaaa atgttgattt agatgaaatg attaataaac aaagcattat aggcaaaaca
     9421 ggaacaagtg gtttagcctt aggcgatcat ttgcattttg gagttttggt tcaaggggtt
     9481 gaaacgcgtc ctgaacaatg gcaagataaa aaatggatag aaaataatat ttacaatgtt
     9541 ttaaatgatg gtaaaaagat aattttagga aaaaattaat gaaacaatta actttagcaa
     9601 aaactgtcaa aggcgtaggt ataggacttc ataagggtga acccatagaa attactttag
     9661 agcctttaga agcaaatagt ggtatagtat tttttagaag tgatcttaat gcaagctata
     9721 aggcaagtcc tgaaaatgtg atcaatactc aaatggcaac tgttttagga gatgaaagag
     9781 ggtttatttc tacaatagag catttaatga gtgcgattaa tgcttatgga atcgataatg
     9841 tacgcattgt tttaaatgca aatgaagctc ctgttatgga tggatcaagt attagttttt
     9901 gtatgatgct tgatgaagca ggggtaaaag aacttgatgt gcctaaaaaa attatggtaa
     9961 ttaaaaagcc tatagaagta agagatggta ataaatttgt gcgtttaact cctactaaag
    10021 aaccccgtat taattacaca attaaatttg acaatgctgt cataggtgaa caaagttaca
    10081 attttgaatt cagcaaaaaa aattatatag aaaacatagc aagggctaga acttttggtt
    10141 ttttaaaaga tgttcaagct cttaggagta tgaatttagc actaggtgga agtttagaaa
    10201 atactatagt agtagatgaa aatcgtattt taaatcctga gggtttgcgt ttcaaagatg
    10261 agtttgtaag acataaaatt ttagatgcaa ttggagattt aaccttactt ggatatcgtg
    10321 tttttggaga ttatacttca tatgctggga gtcatcattt aaatcattta cttactaaag
    10381 aagttttaaa agataaagat gcttatgaaa ttgtaagcct tgaaaaaaca acccaaaaag
    10441 cttatgaaaa ggtatttgca taaaaacttc tcttttactt aatactttat ctaagccttt
    10501 aatgatcgga atttatcaag atgataaact tataaaaact tataaaagtg aagaaaaagc
    10561 aagcgaattt ttaccaaaaa ttttagatga attgcttaaa gaatatgatt ttacaagttt
    10621 aatctatgct aatggtccag gttcttatat ggggattaaa atttcttatg taagtttgag
    10681 tactttaagt atagtaaaaa atattccttt atttgcggtg agtgcttttg aattaaatgg
    10741 ctataaaccc ataagtgcaa ataaaaattt ttgttttgta tataaggaag gtgaaatttg
    10801 tttagagcaa aatatcccag cagagttttt tttaccaaaa aatttacaag agcttaaact
    10861 aaataatgat aatcttccct tttatttttt agatgcaatt taggatgaaa tttgaaaatt
    10921 ttagttccag ctacgagtgc gaatttaggg ccaggttttg attgtttagg acttagttta
    10981 aagcttttta atgaaactca aatccaaaaa tcaggtgttt ttagcattag tattggaggc
    11041 gagggaagtg ataatatttt tcttaaaaaa aacaatatat ttgtaaatat tttttatgaa
    11101 atttatgaaa aactaagcgg aaaaaaagat aattttcgtt ttatttttca aaataacatt
    11161 cctctttcaa gaggattagg aagctcttca gctgtgattg ttggagctat tgccagtgct
    11221 tattatatga gtggatttaa ggtagaaaaa gaacgtattt tagatgaagc tttaatttat
    11281 gaaaaccatc cagataatat cgctccagct actcttggtg gttttgtgtg ttctttggtt
    11341 gaaaaaaata aagtttatag tatcaaaaaa gagattgata aagatttagc tgctgtggtt
    11401 gtgatcccaa atttggcaat gagcacggaa caatcacgcc aagctttggc caaaaattta
    11461 agttttaatg atgcggtttt caacctttct catgcttcat ttttaaccgc ttgttttttg
    11521 gagaaaaaat atgaattttt aaaatttgca agtcaagata agctccatga aatcaatcgt
    11581 atgaaaaact tacccgagct ttttgaagtg caaaaatttg ccttagaaaa taaagcttta
    11641 atgagcacac tttcaggttc gggatcgagc tttttttctt tagcttttaa agatgatgct
    11701 ttagctttag caaagaaaat acaaacaaaa tttaaagatt ttcgtgtgca atatttagaa
    11761 tttgatgata atggctttga aatttgctaa aaaatataaa aaaaagatat aattttgaaa
    11821 aaacatatac caattagaat gtgcatagtg tgtaaaaacc gctttgagca aaatatgtta
    11881 tttagattta aagttgtttt aggagatatt gtgcctaaag cagaacatgg aagaagcgga
    11941 tatttatgtc aaaattgtat tgagagagaa gataaagtct tacaaaaagc attttctaaa
    12001 atatgtaaaa atttaaatac taaaattact cagcaaggac ttaaggagat atttttaaat
    12061 ggcaaagatt agaattcatg aaatcgcaaa agaattaggt tatgatagta aggaaattat
    12121 tgaaaaggca aatgaattag gacttggaat taaaacagca tcaaatgctg tagaacctga
    12181 gattgcggca gctatttatg agtatataca aacaagagaa attccagaag cttttaagaa
    12241 aaatatcaaa actcctacag caaaaaagcc taaaaaagaa aatataaaag aacaagaaaa
    12301 gctaaatgaa tctgaaaaaa aagaacctaa aaaagaagaa ttaaaaattg aaaaagaaaa
    12361 tgcaaaagag gaagaaaaac aagaaattat tgatgctcat aagccacaaa gccttgctag
    12421 tgcaacttta gccaaaagac gcggacttgt tattgttaaa aagaaaaaag acgaagaaga
    12481 aattcaagtt aaaaaagaag aagtaaaaaa ttcaaatgat atatctatca ataatgaaga
    12541 gcgcttaagt ttaaaaacta tgttttcaaa tgctgatgag agtttaaaga aaaagaaaaa
    12601 agaaaaaaaa tcttttgttg cgagtaaaaa agaaagtacc gaaaaaatga attttttaga
    12661 tgaacatgat tttggtgata tttctttaga tgatgaagat gaggtagtat tacctgattt
    12721 tagtgtaaaa gaacaagaaa aaccacaaaa tatcaataaa aaacaaccta attttataag
    12781 acaagctgtt ggaaattctg cgggttttgg gcttgaaggt ggaattcaaa gaagaagtcg
    12841 taaaaaacca tctaaaaaga ttgaaaaaaa ggaagtagaa gaagtaggta gcgttgctat
    12901 ttctaaagaa attcgtgtgt atgaattcgc tgataagata ggaaaaagca ctagtgaagt
    12961 gatttcaaaa cttttcatgc ttggaatgat gacaacaaaa aatgatttct tagatgaaga
    13021 tgcgattgaa attttggctg ctgaatttgg tatagagatc aatatcatta acgaggctga
    13081 tgagtttgat tatgtaaaag actatgaaga agagactgat gaaaaagatt tagtgactag
    13141 agcgcctgtg attaccatca tggggcatgt tgatcatggt aaaacttctt tgttagatta
    13201 tatcagaaaa tcacgcgttg caagtggaga agcagggggt attacccaac acgtgggtgc
    13261 ttatatggta gaaaaaaacg ggcgtaaaat tacttttatc gatactccag gtcacgaagc
    13321 ttttactgct atgcgtgcaa ggggtgcaag tatcactgat attgtaatca tcgttgtagc
    13381 cgcagatgat ggggtaaaac cacaaaccaa agaagcgata aatcatgcta aagcagcagg
    13441 tgtgcctatt attatcgcta ttaacaaaat ggataaagaa gcggcaaatc ccgatatggt
    13501 aaaaactcaa cttgcagaaa tggaaatcat gccagtagaa tggggcggat cttatgaatt
    13561 tgtaggagtt tcggctaaaa caggaatggg gattgaagat ttacttgaga tcgtgctttt
    13621 acaagctgat attttagaac ttaaagccaa tccaaaaagt tttgctaaag caagcattat
    13681 agaaagttct gtgcaaaaag ggcgtggtgc ggtggctact atcatcgtgc aaaatggaac
    13741 acttactgta ggaagtaccg tggttgcagg cgaggcttat ggaaaagtgc gtgcgatgag
    13801 cgatgatcaa ggtaaagctt taaaagaaat caaaccaggc gaatgtgggg ttatcgtagg
    13861 gcttagtgaa gtagcagatg caggtgaaat tttaatcgca gtaaaaaccg ataaagaagc
    13921 aagagaatat gctaataaac gccacgaata caatcgccaa aaagaactta gcaaatccac
    13981 taaagttagc attgatgagc ttggagctaa gatcaaagaa ggtaatctaa aagccttgcc
    14041 tgttatttta aaagctgatg tgcaaggatc tttagaagcc ttaaaggcaa gtttagaaaa
    14101 acttagaaat gatgagatta aagtgaatat cattcatagt ggagtaggag gaatcacgca
    14161 aagtgatata gagcttgcaa gtgcgagtga aaactctata gtactaggtt ttaacatacg
    14221 cccaacaggg gaagttaaag agcgtgctaa ggataaaggc gtagaaatta aaacttataa
    14281 tgtaatttat aatcttttag atgatgtaaa agccttactt ggtggtatga tgagcccgat
    14341 tatttctgaa gagcaattag gacaagcaga gattagacaa gtgatcaatg taccaaaaat
    14401 cggacaaatc gcaggttgta tggtaactga aggggtgatt aatcgtggag ccaaaattcg
    14461 ccttatccgt gatggagttg tggtttatga aggaaatgta agttcgctta aacgctttaa
    14521 agatgatgct aaagaagtgg caaaaggcta tgagtgtggc gtaggtatag aagggtgcga
    14581 tgatatgaga gtgggtgatt atatagaaag ctataaagaa gtagaggaac aagcaagtct
    14641 atgaacccaa gtgagattaa aaaactacgc actgaaagta tcttaaaaga gctgatccct
    14701 gaagctttag caaatttaga tgatgaaaat ttgaaaaatt tgtgtgtagt ggatgtagag
    14761 tgtaaaaaag gcagatacga tgcttttgtg tatcttgata agatgttttt taatgttcat
    14821 gagcaagaaa aaattttatc ttctttaaaa aaggcaagta gagctttgca aaattactgc
    14881 atgagtgagc agggttggta taggtgtccg aattttcatt ttaaatttga tgataggctt
    14941 gagtatcaaa accatatgga tgcacttttt gaaaaaataa aaaaggataa aaatgaatct
    15001 tgaagccctt tgcaaagaag caggacttag tttttatgat gatgagctag taagtgaaaa
    15061 tggcagaaaa atttatagaa tttatgtgca aaaagaaggc ggggtaaatc ttgatgattg
    15121 tgcaagactt agtgaaattt tatcgcctat ttttgatgta gagccacctg taaatgggga
    15181 gtatttttta gaagtatctt caccaggact tgaaagaaaa cttagcaaga tagaacactt
    15241 tgctaaaagt ataggtgaac ttgtgaagat tgcaaccaat gaaaaagaaa aattcgaagc
    15301 aaaaatcatt gctgtagatg atgaaaatat cactttagaa aatttagaaa ctcaagaaaa
    15361 aactactata aattttaatg atataaaaaa agctagaacc tttgtggagt ggtaagaaat
    15421 ctaaatatga tttaaaaata gcataattta aggatttggt aatgtggaat ttagatgaaa
    15481 aaaaattaca agaaatgctt gatggctttt taaatttcca aaaagtatgg actttagaaa
    15541 aagttaaaaa tatgactctt gaagaatata ctaacattaa aaaagataat ccaaatagag
    15601 atgattttac tttttggata gaaagtaaat tggataatct aggaagtatt tggggcggct
    15661 cagcttttaa atttggtata tatagaagaa atgatgaaag tcagaaagaa tcttctagcg
    15721 gtagattata tagtcaaaat tatgcttgga ttgctaaata tggcaataat gaaaatgaag
    15781 catttaataa tatcaaagaa aaaatcatac aaataataca agcaagtcaa gataataatt
    15841 taaaagctat agaaaaaata gattttgggg atgcaattaa atggaaaata gcttttcatt
    15901 atcaagatgt aaagaatata aaaatagtta atattttttc taaaaatgtt ttagatttaa
    15961 tatctttaaa tgaatttaaa gaaaaattaa aaatatatca aatacataaa aaattattag
    16021 agaataaaaa ttcatcatta gttaaaatga tagaaaatat agctattcct ttatggaata
    16081 aatatggcat ggatagtcaa aattatatag ataaaatgaa aaatttatt
//
LOCUS       DAQSLY010000025        16032 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.025, whole genome shotgun sequence.
ACCESSION   DAQSLY010000025 DAQSLY010000000
VERSION     DAQSLY010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.025"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..117
                     /locus_tag="R2H98_000661"
     CDS             <1..117
                     /locus_tag="R2H98_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HEE9023557.1"
                     /translation="KEILTFLYDYQQKNNISYIFITHQSDLFYKFNHKKLKL"
     gene            230..619
                     /locus_tag="R2H98_000662"
     CDS             230..619
                     /locus_tag="R2H98_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEE9023558.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFIFIVLLGVGFLYAYKKGAFAWQSIK"
     gene            601..1104
                     /locus_tag="R2H98_000663"
     CDS             601..1104
                     /locus_tag="R2H98_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEE9023559.1"
                     /translation="MAEHQINYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKVSRK
                     IAPKRLV"
     gene            1101..1895
                     /locus_tag="R2H98_000664"
     CDS             1101..1895
                     /locus_tag="R2H98_000664"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEE9023560.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIASKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            1897..3123
                     /gene="nuoD"
                     /locus_tag="R2H98_000665"
     CDS             1897..3123
                     /gene="nuoD"
                     /locus_tag="R2H98_000665"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEE9023561.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTPPEILAMHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            3120..3347
                     /locus_tag="R2H98_000666"
     CDS             3120..3347
                     /locus_tag="R2H98_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEE9023562.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            3344..4036
                     /locus_tag="R2H98_000667"
     CDS             3344..4036
                     /locus_tag="R2H98_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023563.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKETKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSLKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            4033..6495
                     /locus_tag="R2H98_000668"
     CDS             4033..6495
                     /locus_tag="R2H98_000668"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEE9023564.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKYWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPTNGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFISHIHKSGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKNNIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            6488..7486
                     /gene="nuoH"
                     /locus_tag="R2H98_000669"
     CDS             6488..7486
                     /gene="nuoH"
                     /locus_tag="R2H98_000669"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEE9023565.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFISLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYASMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALAVLL"
     gene            7496..8137
                     /gene="nuoI"
                     /locus_tag="R2H98_000670"
     CDS             7496..8137
                     /gene="nuoI"
                     /locus_tag="R2H98_000670"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEE9023566.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFLGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDAMLESALENQNTQEQGENK"
     gene            8134..8652
                     /locus_tag="R2H98_000671"
     CDS             8134..8652
                     /locus_tag="R2H98_000671"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEE9023567.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            8649..8945
                     /gene="nuoK"
                     /locus_tag="R2H98_000672"
     CDS             8649..8945
                     /gene="nuoK"
                     /locus_tag="R2H98_000672"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEE9023568.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            8947..10737
                     /gene="nuoL"
                     /locus_tag="R2H98_000673"
     CDS             8947..10737
                     /gene="nuoL"
                     /locus_tag="R2H98_000673"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEE9023569.1"
                     /translation="MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDRNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIPGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVATFVILLILVWMV"
     gene            10739..12226
                     /locus_tag="R2H98_000674"
     CDS             10739..12226
                     /locus_tag="R2H98_000674"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEE9023570.1"
                     /translation="MLNYLIFFPLIAAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGASFDYNFSFKILKFFSLHVGVDSIALVLMLLSSLMIFLSFLFLKLKQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIENFSLRLREIVTLVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            12216..13604
                     /locus_tag="R2H98_000675"
     CDS             12216..13604
                     /locus_tag="R2H98_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEE9023571.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIATRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFAILLML"
     gene            13626..15992
                     /locus_tag="R2H98_000676"
     CDS             13626..15992
                     /locus_tag="R2H98_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEE9023572.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFAPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSIRDQQILEKMIDDAKNWMRTFTSDKNFSEVLHIMLKTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDT
                     FAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFMYLDTLAKINKNEESLAVLTDLLKLKLSDKDKA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSVSNWQNLCKSKNQILNQ"
BASE COUNT         5101 a         1916 c         3021 g         5994 t
ORIGIN      
        1 aaagaaattt taactttttt atatgactat cagcaaaaaa ataatatttc ttatatattt
       61 ataacccatc aaagtgatct tttttataaa tttaatcata aaaaattaaa actttaaaaa
      121 atatttttta atataagttt caatatagaa agtttagagt aaaataaaga aaagtgtaaa
      181 tttaattttt gttgtggagt gattaaagtg ctttaaaaaa ggagaataaa tgtctcatat
      241 agatgcttcg catccttatt ttggtatttt tttaatgcta gtacttgcta gtgttatttt
      301 tttcggactg gtttttttag cttcaaaaat cggtaataat tttgccgcaa aaaatcgcaa
      361 aaaattagga cttggaattt atgaatgtgg tcctattcct gttaaacaag ctaacaagat
      421 taactctcaa tttttcatca tcgccttaat cttcatactt ttggatatag aagttgtgtt
      481 tttatttcct tgggctttga tttttaaaga tttaggttgg tttgggcttt tagaagtttt
      541 tatttttatc gtacttttag gagttggatt tttatatgct tataaaaaag gagcgtttgc
      601 atggcagagc atcaaataaa ttatgcaagt ggtttacccg tagttttaac tagtgttgat
      661 aaactagttc aatggggtag gagtaattct ttatgggctt tatcttatgg acttgcctgt
      721 tgtgcgattg agatgatggc ggctgggggt tcaagatatg attttgatag atttggaacg
      781 atttttagag cttcgccacg ccatagtgaa gtaatgatta ttgcaggaac tttatgtaaa
      841 aagcatgctg aatttacaag aagactttat gatcaaatgc ctgatcctaa atgggtgatt
      901 tctatgggaa gttgtgccaa tacaggcggt atgtttaata cttattctac tgttcaagga
      961 gtggatagaa ttatacctgt agatatttat gtgccaggct gtgctccacg tccagaaagt
     1021 tttcagtttg ctttgatgat tttgcaaaaa aagatccgca aagaaaaagt aagtcgtaaa
     1081 atcgcaccta aaaggttggt ataatgagaa agtatagcga taaaaaaaat gctcaaactc
     1141 aaaattacta caaagataga ttttatcacg cgccacacac tgtaaaatct gatgttaatg
     1201 aaagtgtttt taaagaggat tttgaagttt taaaaactca agtagaaatt ttaaattcct
     1261 ttgtagaact tgatttttgg gtaatagaaa ttaaaaaaga agacaatgtt aaaactttgc
     1321 aaatgcttaa aactttaggg tatttaagtt ttacagaagc aagcgctatt gattttatag
     1381 caagtaaaaa tggttttgaa gtgttttatc agcttttaaa tttagaaaaa aaattaagag
     1441 tgagaataaa aacttttgta ggcgtaaaag agcgtttgca aagcgtggct catgttttta
     1501 aaggggcaaa ttggagtgag agagaaattt atgatatgtt tggaattttc atcataaatc
     1561 atcccaattt aaaacgcatt ttaatgcctg atgattggtt tggacatccg cttttgaaaa
     1621 cttatccttt aaagggcgat gagtttgcaa gatggtatga gattgataaa atttttggca
     1681 aagaatatcg tgaagtagtg ggcgaagaac aaagagattc tggttttgct gatgataaag
     1741 atacgctaaa ttttgcaaga ctttaccatg aagtgccaaa aggtggtcaa aagaaggaaa
     1801 tttcctttaa acaagaatat caagaagatg aaggtgtggc ttttgtaaaa aaagtaaaac
     1861 gtgatgaagc aaaaatttta gagaaaaggc gttaaaatgc aaattcctag caagttaaaa
     1921 ccttattatg aaaatatagc ttttgagcaa gaagactcaa aaatgattat caacttaggc
     1981 cctcaacatc cttcagcgca tggaaatttg cgtcttattt tagaactcga tggagagcaa
     2041 gttgtaaaag cgcgtccttg tataggttat atgcatcgtg gtatggaaaa aatggctgaa
     2101 aatatgattt atcaagaatt tattcctact actgatagaa tggactatat cgctgcttca
     2161 gcgaataatt atgcttattg tgcagcggtt gaaaagcttt gtggtttaga gattccacgc
     2221 cgtgccgcag tgatacgcat gatactttta gaattaaacc gtatcacatc gcatttgctt
     2281 tggcttgcta ctcatgcgct tgatattggt gcgatgagtg tatttttata ctgttttaga
     2341 gaacgagagt atgttttgga tttgatagaa aagtattgtg gtgcaaggct tacgcattct
     2401 tctatgagaa taggcggggt tatgcttgat ttacctgaga attatttaga agaaatgctt
     2461 gcattttgcg ataaatttcc aaatgattta aaagattatg aagatctttt agatgataat
     2521 agaatttggc gtttaagaac tgaaaatgta ggtgtggtta ctaaagaaca agccttaaat
     2581 tggggttgta cgggtgtgat gttaagagga agtggcataa aatacgatat acgcaaagaa
     2641 gagccttatt tgctttataa tgaagttgaa tttggtgtgc cttatgctac gcaaggggat
     2701 tcttatgcaa gatataaagt ttatatgcaa gaatttcgtg aaagtttgaa aatccttaga
     2761 caatgtgcca tgctttataa agatactccg cctgaaattt tagctatgca tcctgagtat
     2821 gtaagtgctt caaaggaaca aattttaacg cagaattatt ctttaatgca gcattttgtt
     2881 ttaatcactc aaggtttaaa accccctaaa ggcgaagttt atgtgcctac tgaaagtcca
     2941 aaaggtgagc ttggcttttt tatccatagt gatggtacag gaagacctta tcgtttaaag
     3001 gctagaacgc ctagttattg gcattgtgcg ttttttgaag aaatgcttgt aggtacttat
     3061 ttagctgatg ttgtagccat tatgggtaat gtaaatatag ttttaggtga gatagatcga
     3121 tgagaagggt agatttaaga aaaagcaaag agctttttga agatttagca caaatcataa
     3181 aagaagcaaa acaaggtgag gttttagtgg tgctttttga aatcggcgat ttttctcctg
     3241 ttgaaaaaag tttttctttt gtaaaagaac aaggctgtga gcttttaaat tctttgaaat
     3301 ttaatcaagt ggattggact attgttataa aaaaggagag agtatgattt atgataatgc
     3361 tctttgtttt ttagatatgc caagccttaa aaacaaaaat ttatgtgaaa aaataggtgt
     3421 aaatagtatt aatatttctt gtttggaaga taaaaactta aaagctaaat tttacaaatg
     3481 cgaaattgca agtttgagtt ttgttttggc cttgctttgt aaattaagcg atgaagggca
     3541 attttgcgat ttagatgagg gatatttaag tgctgaatct tgttttggag aggaagaagc
     3601 aggcgaagtg cttgcttttt taaaagagac taagtattta attatagata aaaatatcca
     3661 ttcttataaa gatagtgaaa atatcaaata ttttttgaat ttcctaagtg taaaatatgg
     3721 attaaagatt ttagatagcg atgaagaaga atgcgatttt aaaaaggcaa aattaaacac
     3781 cctaaaagaa ctcgataatt atgacgggtt agtgcttttt agagcaaatt tgcaagataa
     3841 aaatttacat tgttcaaagc aatttttaca aattgcaaaa tgcaaagatc aaagtgaagt
     3901 tgaaattttg gctaaagatt ttagtcttaa aaccaagctt tgtttagatg aaaatttaca
     3961 aggcactata gcttttttaa attatgaaaa caatggtttt gattttactc caattcgcat
     4021 aaaggaagca aaatgacagt taagattaat ggtatagatt gcgcctttga agaaggcgaa
     4081 tatattttaa atatagcaag aagaaatgat atttttatcc cagcgatttg ctatctttcg
     4141 ggctgtagtc ctactttggc ttgtcgtatg tgtatggttg aagctgatgg taaaaaggta
     4201 tattcttgca atactaaagc aaaagagggc atggttgtag aaagtgattt acaaaatctt
     4261 tgggatgaaa gaaatgagat catgcaagct tattgtatca atcatccttt agaatgtgga
     4321 gtttgtgata aatcaggcga gtgtgaattg caaaatttca ctcataaaag tcgtgtaaat
     4381 gttcaaaaat attggattaa agacacgcat aaaccgcata aacattgggg aatgattaat
     4441 tacgatcccg cactttgcat agtatgtgag cgttgtatta cagtttgtaa ggataaaatc
     4501 ggagaaagtg ctttaaagac tgttcctcgt ggcggagata gtgtggataa tagctttaaa
     4561 gagagcatgg gaaaagatgc ttatgcgatt tggactaaat ttcaaaaaag tttgataggc
     4621 cctacaaatg gcgacacgct tgattgttca ttttgtggag aatgtacaag cgtatgccca
     4681 acaggagctt taataggttc gaaatttcaa tacacttcaa atatttggga acttaaaaga
     4741 atccctgctt caaatccaca ttcaagcgat tgtgagttga tgtattatga tattaagcaa
     4801 agcggcatta gcaatcaaaa agaaaaaatt tatcgtgtga gtaatgattt tgcctttgcg
     4861 agtttaaata aggctgcaag atttgctttt gatacgcaaa atgaggcgga taaagatgaa
     4921 aaagccttta aagaacttgt ggagcttttt gagaaaaatg aaattaaaaa cattaaattt
     4981 aatagtttta ttaccaatga agaagctttg attttacaaa atttaaaaaa gaaatttaat
     5041 ctttctttaa tcaatgaaga agctttgaaa tttaaagaat ttttacaaga atttatcgct
     5101 aattctggtg agttttatag cgctaatact caagatataa caaaaagtga ttttttggtt
     5161 gtggctggaa tgcttttaag atatgatgct ccaacgctta gttataaaat caataatgct
     5221 ttagtgatga ataaaggctc agggctttat tttcatccta tggaagatat gggtatagca
     5281 aaatattcta aaaattttat ctcgcacatt cataaaagtg gcgatgaaga gcaaatttta
     5341 tattttttac ttcaaaaatt tagccaagat gaaggtatca aaactcattt agcagagttt
     5401 tttgttagtg aaaataaaga aatagaagaa agtatcaacg aagaagttgt agaacaagtc
     5461 atagaaaaag atgaagaagg caatgaaatt caaaaagaag taaaaaaagt cgtacctaag
     5521 aaagtgaaaa acaacataga agtacaacgc tctgtttttg ctaaaaattt aggcatagat
     5581 gaagataaat tagaagattt attgcttaaa aaagcaaatt ttactcttgt tatagggagt
     5641 gatttttatt ttcataaaaa tgcgaaaaaa cttgctaaat tacttgcttt gatccaaaat
     5701 accactcctt ttaaagtctt tttaaatcct acgcatacta ataccttagg tgtggctatg
     5761 atttgcgatt tggataacaa tacacaagaa ggcaagactt taggctacaa tgaaaaaggt
     5821 gattttagtt tttcttatga agagcatgca aatttagcta gtgcgagttt aaatcagcaa
     5881 gaaggaactt ttttaaatta tgataaaaga gtggtaccaa ctaacgctgc tttagaattt
     5941 aagggatatt ttttaaatga tttggctaat gctttaggtt ttgatgagga atatactata
     6001 aattatacta agagactccc tataaataaa ggtttttctc cgattgattt tgatcattta
     6061 gacaattttt ataccaatgc aggcgattgt aaaaggggat atgagcttaa tttagaatgt
     6121 ttcaaacaag ttgctaaaaa agaattcatc tctccaaatt ttgaaaattt aagcctaaaa
     6181 gaagatgaaa ttttgcttta tagtgctaat cctagctatc aatttggtag attttcaaat
     6241 cgtgctagtg cgattaatga ggtgattttt ttaggtgtaa gtgaaaattt agctaaagag
     6301 aaaaatttaa aagataaaga tcttgtaaaa cttaaaataa aagataaaga attaagcctt
     6361 agtgtgcgtg tggataagga tataaaaaat ggagctttct tgccgtattt tgatgaaaaa
     6421 cttgacacgc taagcttttt tgatgaaaga tttgttgtgg cgaatttaga aaaattagga
     6481 gcaaaccatg agtgattttg ctttttttgc tttagagact ttgattaaat gtattattat
     6541 cattgcaata tttgcgagtt tagcaggtct tgcaacttat gctgaaagaa aggttttagc
     6601 ttattttcaa agacgcatag ggcctgatat ggtagggcct tttgggctta ttcaacttgt
     6661 agctgatatg ataaagcttt ttactaaaga agatataatc ccttcaaatt cgcaaaaatt
     6721 tatttttgct atagcacctt tgatttctgc tatttgtgct tttatttctt tagcagctat
     6781 tcctatgcta cctgaattta ctttatttgg aagggttatt cagcctatag tggcagatat
     6841 caatgtagct ttgctttttg tcatcggtac ttcaggactt tgcttttatg cggtgttttt
     6901 gggtggactt gcaagtaata ataaatggtc gattttaggg gctgcaagag ggcttgtagc
     6961 gattatttcc tatgaaagcg taggagcttt agctttgatt gctattgtaa tgcttgtagg
     7021 ttctttttct ttggtggata ttaacaatta tcaaagcgat ggattttttt cttggcttat
     7081 ttttaaacag cctctagctt ttgtgctttt tataattgct ttatttatag agactaatag
     7141 aactccgctt tgtttgacgg aaaatgatgc tgaaattgta gcgggttatg gaacggagta
     7201 ttcgggttta agatggggta tgttttttat aggtgaatat gcttctatga tagctggagc
     7261 tattttggta actcttttgt ttttaggggg ttttaatagc ttttggatta ttcctggttg
     7321 gattatgatg atagtaaaat caagttttat tttcttttgg tatttttggg caagagctgc
     7381 ttttccgcaa ttgcgtccag atcaagtgat gaaaatgtgc tatttgatct taatcccttt
     7441 agcggtttta aaccttttaa tcactgcttt ggcagttctt ttataggagt ttgatatgaa
     7501 aaattattac ttagtggatg agaaaagaaa aactcctgtt agcacttggg agaaaatttc
     7561 acaagctttg cgtagaagtg ttaaactaga gctttttcta gggctttttg tgatgatgag
     7621 agaattgctt aagagaaata atagtgctac gattaaatat ccttttgaaa aggtaaagct
     7681 tgacaatcgt taccgtgctg ttcatcgttt gatgcgtttt atagaaagcg aaaatgaaag
     7741 atgtataggt tgtgggcttt gcgaaaaaat ttgcattagc aattgtatca gaatggaaac
     7801 ttctttagat gaaaatgggc gtaaaaaagt agaaaattat agtattaatt tagggcgttg
     7861 tatttattgt ggtttttgtg ctgaggtttg tcctgaactt gctatagtgc atggcacaga
     7921 gtatgaaaat gcagccgagc aaaggtctta ttttggctat aagcaagatt ttttaactcc
     7981 tattgataag cttaaaaatc aagttgaatt tgaaggagca ggaagtctta gaaaggatgc
     8041 aaatttgtgg gttaaaaaaa cgccaaatta ttacgatgcg atgcttgaaa gtgccttaga
     8101 aaatcaaaac acacaagagc aaggagaaaa caaatgatag aaaatttagc ctttgtattt
     8161 tttagtgtag tggttttagg cttttttggc attgcggttt taagtaaaaa tatgctttat
     8221 tctctttcgg ctttagcggg tggaatggtg tttttatcgg gattttattt tttacttgat
     8281 gcagagtttt taggtgtgat acaaattatt gtttatagtg gagctgtact tggactttat
     8341 agttttgcga tgatgttttt tgatgcttct aaagaattta aagaacaact taaagctaaa
     8401 aaaagttttt ttactttggt ggttttaagt gcgattttac ttttggccat gcttataggt
     8461 tttaaatacc aaaatatcag cacggatttg cctttaaacg atcctgcttt gtttgatttt
     8521 aataaacaac tggctttagc gattttttca aaatatcttt tggcttttga gtttatagct
     8581 attttacttt tgattgcttt agtgtgtgct atagtgctta ctcataaaga gctaacaaag
     8641 gaaaaacaat gatagaaaag tattttttta tagctatttt aatgtttgtc atagggcttg
     8701 taggtatttt aaaaagacaa aatctcatca tgctttttat ttcgagtgaa attttattaa
     8761 atagtgctaa tttagcctta gtagcggctt ctaaaatgca caatgattta aatggacagg
     8821 tttttgcact ttttatcatg ggtgtagcgg cttgtgaagt agctgttggt gtagctttgt
     8881 gcgtgctttg gtatagaaga aaaggcactt tggaattaaa aagcttaaaa gaagtggagg
     8941 cttagtatgc aaaatttagc tttgatttct ctttttagtc cttttatagc ttttttgttt
     9001 gcaagttgtt ttgctttgag tgagaaaaaa caatttgtag ggataatttg ttcacttcta
     9061 gttgctttga gtgctttttg ttctttgtat ttgctttttt gcaatgaagc ttttaatgtg
     9121 agtttgtttg aatggtttgc tggagtaaat tttggctttg atatagacgc tatttcgctt
     9181 actatgatga gtgttgtagg tattgtagct acttgtgtgc atttttatag tattttttat
     9241 atggctcatg atgagggttt taataaattt tttgcttatt tggggctttt tgtcttttct
     9301 atgctttttt tagttatgag tgataatttc ttaggacttt tcgtaggttg ggaaggcgtt
     9361 gggctttgct cttggttgct tataggtttt tggtataaaa atgatactta ttcttttgcg
     9421 gctaatgaag cttttattat gaaccgtatt gcggatttgg gtatgctttt aggaattttt
     9481 tggctttatt tacaagcagg aactttaaaa tatgatgaag ttttttccat ggcacaaagc
     9541 ttagatcgca acgctttgat cttaatcgca acttgtttat ttataggggc tatgggaaaa
     9601 tctgcacaat ttccttttca cacttggctt gctgatgcta tggcagggcc aactcctgtt
     9661 tctgcattaa tccatgcagc aaccatggta acagcggggg tttatttggt aattcgtgct
     9721 agcacgcttt atgatttagt tcctgaggtt tcttatatta ttgccttact cggagctttt
     9781 gtagcgattt ttgcagcctc tatggctttg gtggctaggg atttaaaacg cattattgct
     9841 tactctactc tatcgcaact tggatatatg tttgtggctg caggacttgg ggcttatggt
     9901 atagctttat ttcacttagc tacacatgct ttttttaaat ctttactttt tttaggtgct
     9961 ggaaatgtaa tgcatgctat gaatgataaa ttagacatta aaaaaatggg tggacttttt
    10021 aaacctttaa aatttaccgc tattttgatg tgtataggat ctttagcttt agcaggaatt
    10081 tatcctttcg caggattttt ttctaaagat ttgattttag gatattcttt catttctttt
    10141 caccatggta tttttttagt gcttttaatc gcagcttttt taacagcatt ttatagcttt
    10201 agacttttaa tgttggtatt ttttacccct gcaagacatg atgaacatcc gcatgaagca
    10261 agtaaaatag cactcttagc tatgagtcct ttgatggttt tagctattat tccaggattt
    10321 tttgaacata gtttttttga atatttaagc acaaaattag tttttattga tgcacaaaat
    10381 caaattgtaa tgatttgtgc gagtgtagca gctattttgg gtgtaatttt ggctattttt
    10441 gcttataaaa attcttggtt taaggaaagt attgaagaaa ataaaattca caaactttta
    10501 agtaatgatt attttattcc taggttttat catcaattta tcgtttcaaa atatgaaagt
    10561 ttatgtgcga ttttaaaaca ttgtgatctt tatatttttg atagaatagt tgaaaaaatt
    10621 gctttgtatt ctcaaaatat ttcacaaaaa atgattatgc caaacagctt aaacctaatg
    10681 cttaggtttt tggtggcaac ttttgtgatt ttgttgattt tggtatggat ggtgtaaaat
    10741 gctaaattat ttgatatttt ttcctttgat tgctgctttt gtggttttgc ttttaaatcg
    10801 tggaggcgtt aaggttttta gcgttgttgt aagttttatg attttggctt taaatttgga
    10861 tatttttgcg gattttttac aaggggcaag ctttgattat aatttctctt ttaaaatttt
    10921 gaaatttttt agccttcatg taggagtaga cagtatcgca cttgtattga tgcttttaag
    10981 ttctttgatg atatttttaa gctttttatt tttaaagctg aaacaaaaag cacttgtatc
    11041 ttgtatattc tttttagaat ttgctattat gggacttttt agcgcaaaag atggtttgtt
    11101 gttttatgtt ttttgggaat tttctctttt gcctttgctt tatattatgg gagtttatgg
    11161 taaagatttt agagcagggg tgaaattttt tatctatgct tttgcgggtt caattttaat
    11221 gcttgtggca ttgatttatc aagcttattt aaattatcaa cttttaaaca tcttcacttt
    11281 tgacttagaa atttggaaaa ataatgcctc ggcagtaaat tttacagagc aacttttact
    11341 ttttggagca ttttttatcg cttttgctat caaagctcct ttatttccac ttcatacttg
    11401 ggcacctaag gtttatgcaa attcgcctgt tcttgtttct gtaatgcttg tagtttttaa
    11461 aatggctcct tttggatttt tgcttttttg tttaccgctt tttccagatg cgagtgtgta
    11521 ttttatgcct ttaattgtag ctttatgtat agtgagtatc gtttataatg ctttaattgc
    11581 ttatagagca gaaaatatta aagaattgat cgcttatagt tctatttcac atcttggtgt
    11641 gatgattttg ggaatttttt ctttaaatgc tttgggtatt agtggtgcag ttttttatat
    11701 gtttgcacac ggtattgtaa caggaacttt atttttaatg gttgaacttt tataccaaag
    11761 atatcatact tatgatattt ctttttacca ttctttggcc aaaaaagcac ctttattttc
    11821 aattttcttt atgttaattt tactcgcaag cgtttctttg cctttaactg tttcttttgt
    11881 gggagagttt ttaattcttt taggtatagc aaagattaat ttattttacg ctttgttggc
    11941 aggtttggtg attattttgg gagcgattta tatgttcgca gtatttagaa aaatattttt
    12001 catgcaaaaa caaagcttta tagagaattt ttctttacgc cttagagaaa tagtgacact
    12061 tgtgtgtatt gtagtaatga tttttggact agggcttatg ccaaatatac ttttaaagcc
    12121 gatacaaaaa gatgtggata atcttataaa aacaatgaat attagagctg ttgagcaaaa
    12181 tactttagat tttttatcta aaataggaga ggcaaatgtt aaataatttt ttaaatttag
    12241 aacttttaaa tataagctta tcttatccat ttttattttt aattacaact gcaatagttc
    12301 ttttgctttg ctctggtttt tggaaatttc atcgatcgtt ttatatcggt ataagttctt
    12361 tatctttaat tgtaagtgct tttttgattt taaataatgc aaatgctcaa ggcttagaag
    12421 caaaagcttt tttggccact ttaaataatg atattgtttc attttatgct tctttggtaa
    12481 ttttgtgttt ttcattttta tatcttttaa tgcaaaaaga agaaaatcaa ggtgaatttt
    12541 atgctttatt tttatttatg attgcatctt tgcttttgat ggtttcaagc tcaaatttag
    12601 tacttatttt tataggactt gaaagttctt ctttagcgct ttatacttta atagcaacgc
    12661 gcggaagtga taatgctatt tcaagtgcga taaaatactt tagtgtagcg gctgtaggag
    12721 ctgggttttt tgttatggct gtagctttta tttatttaaa aacaggaact ttagatttat
    12781 ctgctaattt agcattaaaa aatgagtttc aaaaagatcc catgcttttg ggtgctggag
    12841 tgatgatttt tgttctttgt gcaatcaagc tttctttggc accttttcat ttttggctta
    12901 aagatgtgta ttatgcagca catacaaatt tggttgcttt tatttcagtt gtgccaaaag
    12961 ttgccatgtt ggttgtggtt attcgtttgt ttgatttttt aaataataca ggttttgaat
    13021 atatcataat agttctagcg attttttcta tgcttatagg tgcttttgcg gctctaagtc
    13081 aaaacaatat caaaaaaatg tttgcttata gttctgtagt gcattcttct ttggttttgg
    13141 tagcttgcat tcctttatta aaagaacaaa attttgatgg aattttgctt gctatttttg
    13201 gatattggac tttatttgct tttgcaaatt atgctgtatt tatgatttta agcaattatg
    13261 agaataattc ttatgagagt ttaaatgggc ttttggttaa aaaaccttta attgcttttt
    13321 gtttaagcat tagtgtgctt tctttagcag gtatcccgcc ttttggagtg ttttggggta
    13381 aatttatgat tttaaataca gcaattttaa atggatattg gtatttggcg ctttttgtgg
    13441 ctttatcttc tgttattatg ctttatgcgt atttaaagat tttaattcat gttttattta
    13501 tgaaaaatga tagggttcat aatattaagt ttagttttat acaaaatttt attttagctt
    13561 tttgtgtttg tgtaagcact tttgctatat tgttaatgtt ataagagttt tgctataatt
    13621 attttatgag aatattattt ttaattttat taagtttttt aaatgctttt gcttttgagc
    13681 ttgttttaaa cacgggtcgc gaaaataatc aagcttttgc agttttacat gcgagtaatg
    13741 atttagaatt tacatgtcaa aaatttatta ccgaagcaaa agttcatttt gaatgtgata
    13801 ttgcaggtat ggttgataat aaattaaaag atcagagttt ttctgctttt gatttaaaat
    13861 ttatacaaga agctcaaaaa attaaaatga tcattttgcc aaaaatacaa gcaagaatgt
    13921 ttgacacttc tcaaaatatt tatatagata aagaactcag ttcatcaagt tcgcataaaa
    13981 gtaaggcttt tacttttatt tttgcaccag aactagcacc tattaaagac tatgatggac
    14041 ttgattttaa tatcaatttt ccacatgaga gtttgcctta tgttggagct ttggatttaa
    14101 attctgatcc tgttgttatt cctcaaagtg cagatatcaa tacttattta cgcatcaaaa
    14161 aagaatacga taaggctaat tacaatcaag tggtgattga tgcacaaaat gctatcaata
    14221 gatatcgtgg cagtattttt actagtgaat ttatacttta taaattaaga gctcaaaata
    14281 aactttacac tcaagatcca agtatacgcg atcagcaaat tttagaaaag atgattgatg
    14341 atgctaaaaa ttggatgcgt acttttacaa gtgataaaaa tttttcagaa gttttacata
    14401 taatgttaaa aacttatatc gctttagctc agcgtgctga tgtagagtat acaatgtcga
    14461 ttttggataa tgaacaacct aataattatt ttactcagtt atcaaaactt gattatgcag
    14521 attatattta taatttaaat gaaaaagaaa aagctgtaaa tatctatgaa aatacttatt
    14581 ttaatacaaa aaatttagat ttagctgcaa gagcagctat gagtttggca aagaatttgc
    14641 tttcaaatga gcaagtaaat aaagctatag aatatattaa taccatttta aaagccaatc
    14701 ctgaatattt tggaaaagat attccaagat ctttagaact tgctaaatta tttaatcaaa
    14761 aaggacaatt tgatataagt gcaagtattt atgaagatac ctttgctaaa atgtccaaac
    14821 ttgatccaag ttatgaagaa actttaaaag atttagcctt agttttatca catactaaca
    14881 gatctagtga tgctaaaaaa taccttgatt tgtatatgga tgattattta gatggtaagt
    14941 atttagatga aattaaaaaa gcaagtgatg aggtattctt tgctttaggt gataataatg
    15001 caagcttttt gcatcagcgt tatacagatt taatgaagca atatgcaaat aaagatgaga
    15061 atattgcaaa taaagcttta gatgaagatg ttgcacttta ttataaagag ggaaatttta
    15121 gtgctatttt agcttataaa gatcttatag aaagtaaaaa aattccaaat gctactcaat
    15181 ttttagagaa agcagccatt aatgatttaa aaaatgccat aaaagctgat aattgtatca
    15241 atgctgcaaa tatttttatg cgttttagtg cttatgatat aggtcagaaa attgagaata
    15301 aaaaacaaat gttagcttgt cttatcagaa cttctaatgt tgaacaagca cttgattata
    15361 tagataaaaa ttataatgaa gattctatat tttatggtct tcaaaaagca tctattcttt
    15421 ttgataataa acaatatcct caggtgatca aaatttctaa agatatagct aattctagaa
    15481 ttttaaaaag cgatgatgag aattttaagg cttattattt gcaatttttg tctttattgc
    15541 gcttaaatga ctacaatcaa gccattaaaa ttttgcaaat tttagaaagt tttccaatga
    15601 attttagtat ggtagaagcc tacgatgctt tactttctta tgctaatgat cataatatgc
    15661 aaacaacgat tttaacttac gcacctaagg ccattgacta tcaaaatttt aaaggtataa
    15721 atctttttag tcctaatttg gaatttatgt atcttgatac tttggctaaa atcaataaaa
    15781 atgaagaaag tttagctgtt ttaacagatt tgcttaaatt aaaactttca gataaggata
    15841 aggcaagagc tttatatatc caagctttaa cttatgaaag aatgcaaaat atacaagctg
    15901 aaaaagaaag tttaaaacaa tgtcttgaaa tcaaaagtgt ttcaaattgg cagaatttat
    15961 gtaagagtaa aaatcaaatt ttaaatcaat aagtaaattt agagataact agctttttag
    16021 ctagttatct aa
//
LOCUS       DAQSLY010000026        15661 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.026, whole genome shotgun sequence.
ACCESSION   DAQSLY010000026 DAQSLY010000000
VERSION     DAQSLY010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.026"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            81..1145
                     /gene="mqnE"
                     /locus_tag="R2H98_000677"
     CDS             81..1145
                     /gene="mqnE"
                     /locus_tag="R2H98_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEE9023573.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDNSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1155..2474
                     /locus_tag="R2H98_000678"
     CDS             1155..2474
                     /locus_tag="R2H98_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEE9023574.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2488..2931
                     /locus_tag="R2H98_000679"
     CDS             2488..2931
                     /locus_tag="R2H98_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEE9023575.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            2976..3674
                     /locus_tag="R2H98_000680"
     CDS             2976..3674
                     /locus_tag="R2H98_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEE9023576.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLAPLRFVGNILQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            3684..4253
                     /locus_tag="R2H98_000681"
     CDS             3684..4253
                     /locus_tag="R2H98_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEE9023577.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4253..6724
                     /locus_tag="R2H98_000682"
     CDS             4253..6724
                     /locus_tag="R2H98_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEE9023578.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSLFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLKFQITVISSNYIALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGISLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDSKKRHMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDRSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNKFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKLPNQHKEHILKQ"
     gene            complement(6755..7357)
                     /gene="rdgB"
                     /locus_tag="R2H98_000683"
     CDS             complement(6755..7357)
                     /gene="rdgB"
                     /locus_tag="R2H98_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEE9023579.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            7523..8824
                     /locus_tag="R2H98_000684"
     CDS             7523..8824
                     /locus_tag="R2H98_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023580.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQVPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYIMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSVKWGLSSLFD
                     LSVALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFSENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            complement(8821..10494)
                     /locus_tag="R2H98_000685"
     CDS             complement(8821..10494)
                     /locus_tag="R2H98_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEE9023581.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYKARASVYDLGLDLEQSKEVQNRLILVDSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAKDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLVRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            10572..11894
                     /locus_tag="R2H98_000686"
     CDS             10572..11894
                     /locus_tag="R2H98_000686"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEE9023582.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVTKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKNIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEEKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            11891..13696
                     /gene="selB"
                     /locus_tag="R2H98_000687"
     CDS             11891..13696
                     /gene="selB"
                     /locus_tag="R2H98_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEE9023583.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            13745..14455
                     /locus_tag="R2H98_000688"
     CDS             13745..14455
                     /locus_tag="R2H98_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEE9023584.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNTTVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDNELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            14461..14991
                     /locus_tag="R2H98_000689"
     CDS             14461..14991
                     /locus_tag="R2H98_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023585.1"
                     /translation="MSKITLILSFFITLFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLTLKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(15037..15528)
                     /gene="fldA"
                     /locus_tag="R2H98_000690"
     CDS             complement(15037..15528)
                     /gene="fldA"
                     /locus_tag="R2H98_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEE9023586.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIALKLGISDVFNISDIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWIEQIKP
                     YFA"
BASE COUNT         5596 a         2364 c         2336 g         5365 t
ORIGIN      
        1 ttggcttttt ctataaactc tttttcagta agcaaaaatt ataatgcttt atttaaaaac
       61 agcaaaagag taaaattaaa atgaaaaatt taatcaccaa actagaaaat gaagaaagat
      121 taaaccaaga agaagccaat gcactttggg atctagatct ttttacctta ggcaaatacg
      181 ctcacaaaaa acgcactaaa cttcatggaa aaaaagtcta ttttaatatc aatcgccata
      241 tcaacccaac taatatctgt gcagacacct gtaaattttg cgccttttca gcgcaccgaa
      301 aaaatcctaa tccttatttg atgactcatg aagaaatcat gaaaatcgtc gatgaaactg
      361 taaaacgaga aaccaaagaa gtgcatatcg tttcagctca caacaaagat acaacttggc
      421 aatggtattt agaaattttt aaaatgataa aagaaaaata tcctaatctt catgtaaaag
      481 ctatgactgc tgctgaaatt gattttttac atcgtcgttt taaaatgagt tatgaagaag
      541 tgatagaaaa aatgcttgaa tacggcgttg attccatgcc aggcggtgga gctgaaattt
      601 ttgatgaaga agtgcgtaag aaaatttgtc atggaaaagt tagcagtgaa aattggctta
      661 aaattcataa actttggcat gaaaaaagca agcaaagtaa tgctaccatg ctttttggac
      721 atatagaaga aagacatcac aggatcgatc atatgttaag actgcgtgat cttcaagatc
      781 aaaccggtgg atttaatgct tttatccctc tagtttggca aagggataat agctttatac
      841 aaactgataa aatcatggat agtgaagaaa ttttaaaaac cattgccatt tctcgtttag
      901 tgcttgataa tatcaaaaat atcaaagctt actgggcaac aatgacttta aatttagcca
      961 tggtagcaca agaatttgga gctaatgatt tagacggcac tatagaaaaa gaaagtatac
     1021 aaagtgcagg tggtgcaaag tccgccaaag gcacaagttt aaaaactttt atcgatatga
     1081 taaaaacttc aaatcttatt cctgtagaac gcgatagttt atacaatgag ctaaaaacct
     1141 actaaggaga aaaaatgagc ttttttaaac tcaaagaaaa caatacgagt tttaaaaccg
     1201 aagttatagc aggacttact acttttttag ctatggttta cattatcccc gtaaattcta
     1261 gcatagtagg aaatacagga atgcctatag aagctttaat caccgcaaca gctttaatta
     1321 ccatagttgc aagtgctttt aatgcttttt ttgccaatac tcctgtagct atgagtgtag
     1381 gaatgggttt aaatgcttat tttacctttg cggtttgttt aggtcaaaac atagcttggc
     1441 aaagtgcctt aggagctgtt tttatttcaa gtattatttt tctcatactt tcttttacgc
     1501 attttcgcct ttgggtaatc cgcaatatcc caaaagattt acgccttgca atttgtgcgg
     1561 gcataggttg ttttattgca tttttaggct taagtcaaat gggtgtgata atgcataata
     1621 aagatacctt agtcagcata ggaaatttca aaagccctca tgtgcttttt ggaattttca
     1681 ctctagcttt aatcatcttt ttttgggcta taaaacttcg cggagctttt attttggggg
     1741 tattagcaag ctccattatt gcttggattt tccatttaga caatgcaagt tttcctgtgc
     1801 aaatcttttc ttggccaaat tttagcatgg aaaatggttt aggagccatc tttttacaac
     1861 ttgatatcaa aagtgcctta aatattacta tgatacctat aattcttact ttttttatca
     1921 ctcaactttt tgatagcata ggaactatca caggtgtggg tgaaagagga aagatttttg
     1981 atgatcccaa aaatggagaa aaaaaactaa gcaaaacctt aatggcagat gcaacaggat
     2041 cagccttagg agctatgaca ggcacttcta cagttacagc ctttgttgaa agcactacag
     2101 gggttgaaag cggaggaaga actgggctta cagctttagt tgtagctatt tgttttgctt
     2161 ttacactttt tttactgcca ctttttaaag ccattcctgc aaacgcaata taccccgtac
     2221 ttgtaatggt tggaatttta atgtttatgg aagttaaaaa tatagatttt aaagatagtg
     2281 ctatagctgt agcaagcttt tttactatta tcatgatgcc ttttacttac tccatcacca
     2341 caggttttgc ttttggtttt ctttcttatt tacttgtacg aatttttaaa cgcgaatggg
     2401 ataaaatcaa tcttggcatt atagttttaa gtttattatc tttgggtaat tttttactta
     2461 tggcactaca ataaataagg atatataatg atattttact cctatgaaga atttaaagaa
     2521 gatgtaaaaa ttcttgctaa agaaattaaa aaagatttta accctgatgc acttttagct
     2581 atagcaagag gggggatgag tttaggacac tctttagcag tggctttaaa aacgcgtcaa
     2641 ctttttgctt taaactcaat tcattacgat aatacgaaaa aacttgatac tattgaaatt
     2701 tttaacattc ctgatttaag caagcacaaa aaaattctac tcattgatga tatagtagat
     2761 agtggagaaa gtttagcaga aataaaaaaa gttttgcttg aaaaatttcc tcatatagaa
     2821 cttaaaatta caaccatttt ttacaaaaaa accgctcttt tagagcctga ttttaaagta
     2881 aaagaagcta ctgaatgggt ggatttttac tgggatataa accttgatta aaaatttgct
     2941 ataattttac ttttaaaatt tttaggagtt tttgcttgag aataaaattt atatctttta
     3001 ttttaatttt ttttgctatt tttgcttttg ctaaagaaca aaatttagat gatttcgaac
     3061 aagaatacca aaactatcaa gtaaacgatc cactttcagg atataacaaa gctatgacaa
     3121 gttttaatgt ggctttgtat gattatggtt tgcgtcccgt tcttaaaggc tataacacta
     3181 ttactcctga atttataaga ttaggggtaa gaaatttctt tgataattta cttgctcctt
     3241 tgcgttttgt aggcaatatt ttgcagttta aatttgaaga agcgggagaa gaatttaaaa
     3301 gatttaccgc caataccatt atgggctttg gtggacttat ggatgtggca tcaaaaatgg
     3361 gtcttaaaaa acatcccgcg gacttaggaa ccgttttggc tcactggggt gtaggaagcg
     3421 gttttcatat tgtcttacct atactcggcc ctagtaatct tagagatact cttgctttac
     3481 ctgcaacttg gtatgcaagt tttactgctt acattgatcc tacttgggca agtatagcta
     3541 taagtgctta tggatttggt aatgaactta gttttagact tgatgaaatt gatgaaattt
     3601 atcacaacac gcctaattta tatccattct tgcgtgatgc ttacgagcaa agacgcaatg
     3661 aacttagcaa ataaaggaaa ataatgaaaa aaatattttt aatcttggct ttatttttta
     3721 atgcttttgc cttacagcta gatgaaattt ctagtactat gcaaaaaaac attgatgcaa
     3781 gcttaaaact tttacaagat agcaaagaag acaaaaaaca agctgctgat ggaattttta
     3841 aactttttga tagcataata gattataaac tcatggcaaa actcagtctt tcgaaaaatt
     3901 attctaaatt aaatccaaaa gaacaagaaa aatttaccac agcctttgaa gcaagtctta
     3961 aaaaaagttt taccgataaa ctcagtcttt ataaagatca ggttttaaag gtcaaaaatg
     4021 gtgagttaaa aaatgaaaaa cgctattttt taaccacttc tatggtagta gatggggaag
     4081 aaaaaaatat cattttcaaa ttttacaatg ataataacaa ctggcttgtt tatgatgtag
     4141 atgttttagg tgtgagtata gtacaaactt atagatcaca atttggagat attttagcca
     4201 accaaggctt tgatgcccta cttcaaaaac ttgagagtat tgtcatagaa taatgtttgc
     4261 aaagctttta aagtttttta tttctcgtcc aaaaagtact ttttttggaa ccttgtttat
     4321 atgcctgttt ttaagccttt ttgcttttaa gcttagcgta gatgcaagtg ctgaaagttt
     4381 acttttagaa gatgatgcag atttaaaaac ttttagagaa atttcaaaac attataaaag
     4441 tgataatttt ttacttttag ccttcaaacc ctatgatgaa aaaccttttt caaatgaaaa
     4501 tttagccaaa ttaaaaaaac ttcatgaaga attagaaaag gcccctttag tagagcgcgt
     4561 ttttagcatc atcaatgccc ctttgcttca aagttcacaa aatacggatt taaaagaact
     4621 gttaaaaaat atcccaaaca tagaaagcca agatataaac cgcacaaaag cccgaaatga
     4681 aattttaaat agcccctttt ataaaaataa tatcatctca aaagatggaa aagtaacagg
     4741 gcttattatt tacttaaagc ctgatacagt ttataatgat cttgtagaaa aacgcgatct
     4801 tgctaccgat gaaaaagaaa aagatcaaat tcgtcttgct ataaaaaaac atcaagacaa
     4861 gcaaaaagtt atcacgaaac aaagtctaga tactattaaa agcatagttc gaaattatga
     4921 aaaaaataaa gatacgctct accttggtgg cgtaagcatg atcgctgatg atatgatagc
     4981 ttatataaaa tctgatcttg tgctctatgg tgtttctctt gtatttttac taggacttgc
     5041 actttattat tttttccgtt catggcgctt tgttttttta cctcttttta tttgttttat
     5101 aagcttaagt gcagctagtg gagtttttgc acttttaaaa tttcaaatca cagttatttc
     5161 atcaaattac attgctttgg ttttaattat caccttaagt gtagttgttc atttgatcac
     5221 gcattttatc gaaagtaccc aaaatcatcc caaagctaaa gttgagcgca tagtacttga
     5281 aaccttacta gccaaagcaa atcctagcct ttatgccatt gttacaacga tgataggatt
     5341 tttttcttta atgctttcaa atatcgaacc tatcataaaa cttggtatta tgatgagtat
     5401 aggtataagt ttagctctta tctttagtta tttattttta gcaagtatct tagttctttt
     5461 aaaaccaaaa aactatcata aaaaagagtt taaatttaat cttttagcct tttgtgctaa
     5521 aaccgctctt gattctaaaa agcgtcacat gatttatgga atttcagttc ttgctataat
     5581 cttagcttta ataggcattt caaaactcag agttgaaaat tcttttgtca attatttcaa
     5641 agatcgcagt gaaatcaaaa aaggactttt ggttattgat aaaaacctag gtggaacctt
     5701 gcctttagaa gtcatcattc gttttccaaa taataaaaac gatcaaaata caagcaatac
     5761 tcttgatagt tttgaaagcg aatttgaaaa tttagccaca caagaaactt attggtttga
     5821 ctctaaaaaa acacgcattg caaaaaaagt tcatgaattt ttagaaaata aagaatttgt
     5881 aggctcggtt ttaagtctta atagtctttt aaccctaggg aaaaatatca acgatggaaa
     5941 agagttagat gattttgctc ttgcgttttt aaatgagaat ttacctgcta aatttaaaca
     6001 agacttgctt tcaccttttg taagtataga gaataacgag ttaagattta gtatgcgtat
     6061 tgttgattct gatccgaatt taagacgtaa taagttttta atagatctta aaaaacagct
     6121 caacgagctt gtaaaaaacg atggagtaga agtgcaaatc acaggcataa tggtgcttta
     6181 taataatatg ctccaaagtc ttttttcatc gcaatttgat actcttatat ttgtaatttt
     6241 agctattttc atacttttta tcattgtttt tagggattta aaattttcag ttgcggctat
     6301 attggtaaat gttattcctt taagtgtggt ttttgctctt atgggacttt taggcattcc
     6361 tttggatatg atgagtatta ctatagctgc tattgctata ggtataggcg ttgatgatgc
     6421 tatacattat atttatcgtt ttagagaaga aattaaaaac aaaagcctag aagaagccat
     6481 tatgatttct caccttagta taggttcggc actttattat accacaatta gcatagtttt
     6541 aggttttagt gttatgatga gtagtaattt cattccaacg atttattttg gaattttaac
     6601 cgtttttgta atgattttgc ttttaagtgg aagtttgttc ttattaccaa gctttttaat
     6661 cactatttat tctaagaaaa ccaagcttcc aaaccaacat aaagagcata tattaaaaca
     6721 ataatagcta tatattttaa aaaatttttc atttttatcc tttatttaaa atctttaaaa
     6781 tgatttttgc aagctctaaa gctttaaaac gatgagagat attattcttc tcatccacgc
     6841 taagttgggc taaggtttta tcaaaaccct ttggaataaa aaggctatca taaccaaaac
     6901 cattttcacc tttttctgta tctattactt ttccatgcat ggttccatgc gtactaaatt
     6961 cccccatcaa acctaccata gcaatagcag caacataatg cgccttactt tgtttaaaac
     7021 ctttttttat catttcattg acaagtttat cacggttact tttatcatcg cccttaccgc
     7081 taaatcgagc agaataaatt cctggatttc cttctaaaac atctacacaa atgccactat
     7141 catcacttaa agcgataaaa tctttttttt gcttttcatc caaagcatta aaaactgctc
     7201 ttgctttaat caaggcgttt tctttaaaag tttttccatt ttcttcaatc tcaaaaggca
     7261 ttaaaacttc atcaaaggca taaatttcaa aatcttttaa aatttcttta agttctaaaa
     7321 ctttatgttt attgctcgta gctaggataa tcttcataac aaaagctcca aaataatatc
     7381 aaaacaaaaa tatgatttta taaaatttat ccttgtgcgt agcttttaaa tatcaaatga
     7441 taaaacgatg ttaatcaatg cttaatccat ttcatagtaa aattatccta atttaaattt
     7501 caaatttaat aggaaattga taatgctaaa caatgtctta cccttatctt tcatagttgg
     7561 aacaagattt tttgggcttt ttatagtttt gccagtttta agtctttatg ctttaaaact
     7621 tgaaggcgct aatgaatttt tagtgggact tttagttggt gtttatgcct taactcaaat
     7681 gattttacaa gtgccttttg ggattttaag tgataaaatt ggtcgtaaaa aaaccatgct
     7741 cattggactg attattttta taataggctc tttaatctgc tcttttgcgg aaaatatcta
     7801 catcatgctt ttaggaagaa tgctccaagg tgcaggggcc attggagcag tagctacagc
     7861 aatgataagt gattttatca cagaagaaaa tcgtggtaaa gccatggcgg taatgggttc
     7921 ttttatagga cttagttttg cagcttctat ggtaatctct cctttaatga gtgtaaaatg
     7981 gggtttatct agcctttttg atcttagtgt agctttgtct cttttatgta taattttact
     8041 ttatactgtt gtacctaaag aaaataaaat cactcatgaa aatgaaaaaa ctcctttttt
     8101 tcatcttatt aaacaaaaaa atttagccct tatgaatctt actaatttca tgcaaaaaat
     8161 gcttatgagt atagcatttt taagtattcc tattattcta gtaaaacatt taggctttgc
     8221 ttctgataaa ctttggattg tttatagcgc ttctatggta gcaggtttta tcgctatggg
     8281 ctttgctgga agtttaggcg aaaaaagagg tttagctaaa caaattttac tcttaggaat
     8341 tgtttttttc atactttctt atcttttctt tgcttttagt aattctatag atttttttat
     8401 catagcagtt gtgatttttt ttataggttt taatttacat gagcctatta tgcaaagttg
     8461 tgcatcaaaa ttttgtaaag ttcatgaaaa aggtgcggca ttagggttgt ttaatgcttt
     8521 tggatatggt ggaagtttta taggtggtat tatcggaggg atatttttac atctagatgc
     8581 cttaaatctt ttagctatta ttttagtaat tttagctcta atttggcttg tagcattatt
     8641 tttcttaaaa aatccagctg attttaaaaa cctttatcta cctttagaaa cacctttaaa
     8701 tttcagtact tttagtgaaa atttaggggt tgtagatatt tataaaaact ctaaaaatct
     8761 tgttgttaaa tttgatagca aacttacaaa taaagaagaa ttagaaggca aaattaagat
     8821 ctaattttgc cccgcaaaac ccattgcttt tatcatcact tttgccttgc aatctgcaca
     8881 gcaataaagt gttttgattt tattttcatc attaccaaat ttaggtttca ttaaattggc
     8941 tattttttct acagcttttt tggtggcaaa ttctttacca cattctatac aggcaaaaag
     9001 ctcatctttt gccatggttt gatattcaaa ataagaagct ctaaactcca ttccactacg
     9061 aactaatttt aaagtatctt tttcggcaca acttaactca caatacccac aagtcgtgca
     9121 aagagaggca ttaaatttca aagcattttc ttgtttatca gcgattaaag ctcctacatt
     9181 acaggcaccc acacaagaaa gacaaagcgt acaggtgtta ggattaattt ctaccttacc
     9241 ataacgcaac cattcaccac tttctatact gccaaaatct tcatttttta tcatttcctg
     9301 cattcttttg gcaaaatttt ctcttgtagt taaggtgtta ttatgaaaat catattttaa
     9361 atcttgtatg aattcttgct cttttaaaac attttgcaat tctttttcat ctttagcaac
     9421 aaaaatagct tttttttgaa attttctctc aaaaaaagta tttaaaagta caatagcctc
     9481 attgctacca cgagatacaa aatccgtata aaaaaccaaa tttgctccac tattttgcaa
     9541 aagcgttaaa aaatgcatag aagaaagcca tttttcaccc tctatcataa agggtaaaac
     9601 atcttttggt aaagcaagat ttaaattttc taaagacatt tttttgggaa taattaaaat
     9661 ttttttatct ttataaaact cacaaagggt aaaaaaactt tctcttggca taggagcata
     9721 atcaagcgat ccgctaggac acacgctaat acatcctcca caacccaaac aatccacttg
     9781 agaaaattcc aaatgctttt tttcatcatc ttttaaaatc gccacagtag gacaaatttc
     9841 agcacatttt gcacaatgct cactgcgtct ttcgtggtat tgacacacgc tagcattata
     9901 gctaatataa gttttataat gatattttgg acttttgctt tgcaaaaact ctaacaatac
     9961 ttcaagattt tcaaaattta aaagattata acatccactt tgtcttgtaa aatctttacg
    10021 cacaacgctt aaatccttag ccttaaaaag caaaaaatca aaatctattt ccacttcttc
    10081 gccttgattt ttaaccacag cacaaagttc ccctacactt ccaaaaacag ctaaaatttc
    10141 tgcactgctt aaagcaataa ccttaaatcc atgttctttt aaaaactcta cggtttgagt
    10201 atcgctatct actaaaatca aacgattttg cacttctttg ctttgttcta aatcaagccc
    10261 caaatcataa acgctagctc ttgctttata aagcgttaaa acatttttac tttgctctaa
    10321 aatttcatct tgagaatttt taagataaaa attaatctca ggggcataaa tttgcgcttt
    10381 ttgattttta tcattacaaa ttaatgcttc tttatcattt gcctgatcta aaatttcaat
    10441 agcatctggc aaagggatta aaacatcatt ttttatataa acaaaatctt gcattgtctt
    10501 ccttaatctc tttaaaacat cattttataa attctatgtt aaaataacca aatattttct
    10561 taaggcttaa gatgaacaaa tttagaactt ttccacaaat taacactctt attgaagatg
    10621 agagtttaaa atcctatcct ttttatatca aagcattttt ttgtaaaaaa gttgtcacaa
    10681 aactaaaaga aaatttttcc caagatgaaa tttctaaaga taaactactt ttagaaatca
    10741 aaaaagaaat caaaactttt tatcgcaaag atttacaaag tgtgattaat gcaagcggag
    10801 tggttataca cacaaacctt ggcagaagtg taatccatga agaactttat gaagcgtgta
    10861 aaaatatcat ttgtaattat tctaatgtag agtttgattt agaaaatgga aaaagaggct
    10921 ctcgctatgc tttggtgcta gaaaaactta aaatgctttt tgaatgcgaa gatgctttag
    10981 tggtcaataa caatgctgcg gcagtttttt tagtgcttaa ttctctttgt tatgataaag
    11041 aagtcataag ctcaagagga gaacttgtag aaattggcgg aagttttcgt gtgcctgaag
    11101 tgataaaagc tgcaggtgta aagctttgcg aagttggaac tagtaacaaa acacacttaa
    11161 aagactatga acaagctatc agtgaaaata ccgctctaat tttaaaaacc cacaagtcta
    11221 atttcgctct tatgggtttt catagtgaag taaatataaa agatctacat gaactagcaa
    11281 aagaaaaagg gcttttgagt tattatgatc taggttctgg ctggtgtgaa aatttaaatg
    11341 aaaagctgat taaaaatgaa cctaaaatca aaaaactcgt acaagaatgt gatattttaa
    11401 gttttagtgg agataaactt tttggtagtg tgcaagcagg cattatactt ggaaaaaaag
    11461 aactcataga aaaacttaaa caaaatcaac ttttaagaat gctaagagtg gataaattaa
    11521 ccctatcttt tttaaatgaa agcttaaaag cttatttaca aaaagattat gaaaaaatta
    11581 ttaccttaaa acttttaaat gatgacttat cctttataga agaaaaagct ttaagagtgc
    11641 aaaaagaatt aaaatttcaa acccaactca aaaaaagcaa aagtttagta ggaggaggtt
    11701 ctatgcctga taaaagttta gatacttata tactaacttt tcaaggagat gctttaaaac
    11761 tacaaactcg atttagaaaa gaaaatatca taggacgcat tgaaaatgat gaatttgttc
    11821 ttgattttag aactatacga gaaaatgaac ttcaaaaact tattcttaca attaatcaaa
    11881 tggaaaactt atgaaatctg ttattatagg aaccgcagga catattgatc atggaaaaac
    11941 ttcactcatt aaagctttaa atggttttga aggcgatagt ttaaaagaag aacaagaaag
    12001 acaaatcacc attaatttaa gtttttcaaa tcttaaatta aaagataaaa acatttcttt
    12061 tatcgatgtt ccaggacata aagatttggt taaaactatg gtaagtggag cttttggctt
    12121 tagtgtttgt ttatttgtcg tagatattaa cgagggttta aaagaacaaa gtttagaaca
    12181 tttagaaatt ttaaaaattc ttgatattaa aaatatcatt ttagtactta gcaaatgcga
    12241 tctttgtgaa aacatagagc aaaaaagtgt agaaatttta gaagagttaa aaaatttaga
    12301 ttatcccatt ttaaaagtat ttcataccag tataaaaaat aatcaaggca tagaagaatt
    12361 aaaaaattat ctttatacca tagaaaacaa agaaaatgat gaagaactga tttttcatta
    12421 ttatatcgat agagtttttt ctctaaaagg tataggaact gtcgttacag gcagcttgaa
    12481 tgaaggaagt atcactttaa atgaaaaaat catctgttta gacactcaaa aagaactcat
    12541 tgttaaaaat atacaaaatc acgataccaa tctagagcaa atcaaagctt gcaaccgtgt
    12601 ggctttaagt ttaaattgtg attataaaga gttgaaaaaa ggttatttac taagtaaaaa
    12661 aggttatttt aaagccttta aagaatgcga tgctttagtt aaagcaaaaa atttacaaaa
    12721 tagcaaaatg attttttgcg tgggttcaag acaaatagaa tgcaaaataa atatattaaa
    12781 aaaactagaa aatgatgaat tttttgtgca ttttagtttt gataaaaatg tatttttaag
    12841 ttttgatgag gcttttattt tattacaaaa caatcgtgtt ataggcggtg gtaaggtttt
    12901 aaatccttta agcgaacctt taaaaaaaga acaaaaaaat aaatttttaa tgtttttgaa
    12961 aaataaagat tttaaagcgg ctttttcttt cttaaaagac gcacacaaat acggctttgg
    13021 cttgctttca agttatcaga gatttaaact ttctcatcaa aaagcattga aattagcaaa
    13081 agaattaaat caagtatttg ttgatgaaaa aaatcttaat gtatatcatt tacaaagtct
    13141 agaagaaatt aaaaatttca tcaaattcat acttgaaaaa aatccttatg ccatgctttc
    13201 agcacattct ttagctttaa ggattacttg ggcaagtgaa aatttttgcg aactcgggct
    13261 taaagagatg tcaaatttat tggattttca aaatggaatt tattttaaaa aaggcataga
    13321 ttttgaaaaa cttcaagaaa aaaacaataa ccaaatgtat gaaattttaa aaaaacaagg
    13381 tattaaaccc gaagctcctt ataatcttta tgatttttta gaacttgata gaaaaagcgg
    13441 agataatata ctcaaaaaac ttacccaaaa aggcttagtt gtaagacttt cacacaatct
    13501 ttttatagaa aaacaagctc ttgaaaaact tatgcaagaa tgtttaaatt tattaaaaaa
    13561 tcaaagtctt gatgtgcaaa gtatgaaaga atatttcaat ctttcaagaa aatatgctat
    13621 tgcttattta gaatacttag acaaatttcc tcaagtaagc aaagaagctg aaaaaagatt
    13681 tttaacaaac atttagaaaa tcattataga attaaacata atttatttaa aggatttgta
    13741 aactatgaaa aaattaagtt taattcttgc ctgttcagca tctttgtttg ctgcaagtaa
    13801 ttcagaaatt agtgattttt attcaaaaag cattaaagca caatttccaa atactaccgt
    13861 tagtgtatca aatcgtcaaa aggttggtaa tacgggtttt gaaagtgtta ttgtaagcgt
    13921 tgaattaaat ggacaaaaac aagaaaacat tctttttaca aaagatagtc ttattacccc
    13981 tgatcttatc gacttgaaaa cgggaatttc ttatgctcaa gaatatgaaa tgaaaaaatt
    14041 tcaagaagca agagaaaatt ttacaaaaaa tgctaaagct gtagcacaaa aagaaaccat
    14101 ggtaatagct ttgggagata aaaataaacc tgcaatttat gttttttcgg atcctgaatg
    14161 cccttattgt agagaacatt tagctcaaat tgataatgaa cttaaaaact atcaagttaa
    14221 ttatatttta actccagtac atggaaaatc tgcttttgaa aaatccgctc taatctacaa
    14281 agaagcaaaa aaagcaaaaa atgataaaga aaaaatcgca attttaaaca aatactatga
    14341 tgcaaatatc aaaaattatc caaaagtaag cgatgcagaa ttaaaagaag ttttttcctt
    14401 atatgaaaaa tatcgctcat taggtcttag cgctactcca actattatta aataaaccta
    14461 atgtctaaaa ttactttaat tttaagcttt tttataacac tctttatgag tgcttgcacc
    14521 aatgcaactt tcacacaaag ctttattcaa acaagcaatg aaggcatttt tatcagatca
    14581 caaaaacaac aaagttttaa aatttccttt caaaatccta gtcaacttca aactactcta
    14641 gatagagatt tgactttaaa acttaaaaat ttaggcttaa aagaagtaaa agagaatgca
    14701 gattatgaaa ttttaatcaa tcttgtagat atgaaaaagc attcttatgc tcaaaaaatc
    14761 acaacttcag caagattttt ttatgatttt gatcctttgg aaagcgatgg agaatggatg
    14821 gtagaaaact actatactat gcaagttaat ttacaaatca actctaaaaa tcacaattct
    14881 caaaaaacaa gtcttcttgc aagaacagct tatcttggaa ataaagaacg ctgtcaatta
    14941 tctttagaaa ataaaattat aaatcaaata gtgagttttt tttattttta agaaaaagac
    15001 aatcaagagt ataaaaactc ttgattttaa gaattattaa gcaaaataag gtttgatttg
    15061 ttctatccaa gcatcaattc ttgattcagt ttgatcttct tgattatcat tgtcaagagc
    15121 aagtccaaca aatttaccat ctacaaccgc atcacttgct tcaaatgtat aaccatcagt
    15181 tgaaacttct cctaccaaat ttgcgcctgc atcttttaaa ttttgagcta atttacccat
    15241 gccaccacaa aaagtatcag aataactttc actatcaccc ataccaaata cagctacggt
    15301 ttttccacca agactaagcc ctgaaaaatc aaaaccatcc caatcatctt gtaaatcacc
    15361 acttccccaa gttgaagttc cacaaattaa tttatcgtaa gaatttattt tagctgcatc
    15421 aatatctgag atattaaaaa catcgctaat tccaagtttt aaagcaattg tattagccgc
    15481 tccttctgta ttccccatag cactaccata gattactgct actgacatta ttttctcctt
    15541 ataatttgat ttgatatttt atacggaact aattttaaca tagttttgtt taaatcacac
    15601 aaaaaatgtt ttatttcaat aaaatgtgtg aaatttttgt tacgcggaca aacaatataa
    15661 a
//
LOCUS       DAQSLY010000027        15623 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.027, whole genome shotgun sequence.
ACCESSION   DAQSLY010000027 DAQSLY010000000
VERSION     DAQSLY010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15623
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.027"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            148..2238
                     /gene="cfrA"
                     /locus_tag="R2H98_000691"
     CDS             148..2238
                     /gene="cfrA"
                     /locus_tag="R2H98_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEE9023587.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSTQGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSTLQYNRVSNNGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQNHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYDKNNMIPGIGTCNADRCFRAINHGKVEYKGVELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSSTTTWVNTYNRI
                     EEGRRIYISINGSF"
     gene            2539..3333
                     /locus_tag="R2H98_000692"
     CDS             2539..3333
                     /locus_tag="R2H98_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEE9023588.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3330..3857
                     /gene="grpE"
                     /locus_tag="R2H98_000693"
     CDS             3330..3857
                     /gene="grpE"
                     /locus_tag="R2H98_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEE9023589.1"
                     /translation="MSEQKQEIENENAQNSENLQDDLQDNEKNETNELQKELEELKDK
                     YMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKIK
                     EGVQNTLDLFLKKLEKHGVALIKNEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGYK
                     IADRVIRPTKVSVAK"
     gene            3880..5751
                     /gene="dnaK"
                     /locus_tag="R2H98_000694"
     CDS             3880..5751
                     /gene="dnaK"
                     /locus_tag="R2H98_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEE9023590.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIEGKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            5884..7794
                     /locus_tag="R2H98_000695"
     CDS             5884..7794
                     /locus_tag="R2H98_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEE9023591.1"
                     /translation="MEQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRVD
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGENPERIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKSEHKKGKVQLINTTNEEYFSKMKKSLG
                     SKQNEITKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFA
                     KLKDKDKILEKLQELEQNPQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQGYYDTEVKPYVANSWIAWESVSVGYEILFSKYFYTYTPPRKLEEINNELEKLE
                     KEVQDLLREIVQ"
     gene            7791..9068
                     /locus_tag="R2H98_000696"
     CDS             7791..9068
                     /locus_tag="R2H98_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEE9023592.1"
                     /translation="MKNFKESGIEWLGEIPEHWEVVKINKIVTFVNGYAFENFDFNPI
                     FEIPVIRIGDMQKEKILYDNCLKTKEKEKLKQFLISNNDILIALSGATTGKIAFCDTD
                     NKAYINQRVAIVRSKLKLVKYYFLTRGFSLLIELACNGSAQPNISTKEIGEFKIPLPP
                     LKEQEQIANFLDEKCKKIANFIEKKEKLITLLKEQKQALINETITKGLDKNINFKDSG
                     IEWLGEIPQHWRIVKLKYVAFTNIGLVYTPDDIIENPDEGYPVLRANNIQNGKIDYQD
                     LIYIKSKQIGKKQIISSGDLLMCVRNGSENLLGKTAKIQDGYFSFGAFTAIIKSQFND
                     YFYWIFQTNMLRKSIASFSASNGIGQISQDDIKNFIISFPPLKEQEQIAQFLDSEISK
                     IDKIIEKTKKQIKLIKEYKTTLINQAVCGRIDL"
     gene            9079..10023
                     /locus_tag="R2H98_000697"
     CDS             9079..10023
                     /locus_tag="R2H98_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023593.1"
                     /translation="MEENNLEYIKQNFQIHYYFDDNSHSMNAFVRNAMEKDFLNFINE
                     IGNILDIKIKLESQAREEGGLKENIIICLIGSALCYFAPAVNNILTFYLTEQNKLQNA
                     DLKLKDLELKLKELDLKLKEEELKNKKTQNEYIKKIEENHKIYRLLSNFYKKVENYEK
                     IKKIGYQFNNSNELIIEREQFKSFIIEENKDIETIEEAEIEIISPVLKEGKYKWRGIY
                     NGEKIDFSMGDSGFKNAVIRQEYNFINGTTINCQLEISKTFDDYGEEIKTSYRVKKVY
                     SIQANDISKITKFGQKRRKQKEESLEPTLFDFTKDTKD"
     gene            10026..12941
                     /locus_tag="R2H98_000698"
     CDS             10026..12941
                     /locus_tag="R2H98_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEE9023594.1"
                     /translation="MTNYQEKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFEN
                     FLQATQSVALEELKKRCGQNYKKELFDRIFSQIKTKGIVKALQGYVEIKGIKIYLAFA
                     KPNTNANEESVKKYEQNSLSIIRQLHYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQ
                     NVFHAIKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGS
                     GKIGLANGAGNPSSDGIKTAYLWEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQ
                     FDVVEKLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVV
                     TDRKVLDSQIRENVKSFSQTKNLVEVITHGSKQLKNALEEGKKIIITTIQKFPFILDE
                     IKTLKSKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQS
                     NASYFAFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYSMKQAIEEGFILDVLKDYTTY
                     KSYYKIISCTNDNPKYDKKRANAKLKAYVQNNIRTIEQKSQIMCEHFFQNSFKKIKGK
                     AKAMIVTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESALNGFAE
                     NVLKDEFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNK
                     ENTFVLDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDF
                     ANAILRKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDI
                     ELEKLYILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPS
                     FADGSSKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRET
                     FSKSDIQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            12968..13999
                     /locus_tag="R2H98_000699"
     CDS             12968..13999
                     /locus_tag="R2H98_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEE9023595.1"
                     /translation="MFVSVDFFKTFDISNNERLKAKKVQGKKYEIFLNENEQSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSDFSTPHITWLGHSSLFISFKEYKILID
                     PIFNTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSVKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIAEYFGDFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKF
                     KQDFWWKEE"
     gene            14069..14410
                     /locus_tag="R2H98_000700"
     CDS             14069..14410
                     /locus_tag="R2H98_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEE9023596.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNVLDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(14433..15599)
                     /locus_tag="R2H98_000701"
     CDS             complement(14433..15599)
                     /locus_tag="R2H98_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEE9023597.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAIAGIPEVLKAIQTKFKKDNNLDYETNEIISNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGLERIANFIASY"
BASE COUNT         6014 a         2071 c         2749 g         4789 t
ORIGIN      
        1 aaaacttata tttttaagaa ttatagcaag aaaaaataaa tttttaatta atactaatta
       61 tcacaattga tacaaaattt atcttaaatt aataattatt atcataatat tttgatttct
      121 aaatcaatat ttaacaaaag gagaaaaatg aaaaaaatat gtctatcagt ttgcgccatt
      181 ggtctcttaa gctccaatgc catatcgcaa aatgtagaac tagatagctc aatcgttagt
      241 gcttctggct ttactcaaga tattaaagaa gctcctgcta ctatcaatgt tatcagtaaa
      301 aaagaattac aaagtaagcc ttatagagat gttgcagagg ctatcgcaga tatcccaggc
      361 gttgatttat atgctagcaa gggaaaaaca ggttcttata atattactat gagaggtatt
      421 acgggatata ctttggtttt gattgatgga cgccgtcagg gtattggtgg ggaagttggt
      481 cctaatggct ttaatgaaat ttcaaattct ttattgcctc caatttctag catagaaaga
      541 atagaagtta taaaaggtcc tatgagtact ttatatggct ccgaagcttt aggcggggtg
      601 gtaaatatca ttaccaaaaa agtaagtgat aaatgggaaa cttctgtaag cttggacgct
      661 cttttaaatg aaaataaaga ttggggcaat acttatggaa caagtattta ttctagtggt
      721 cctttgatga atgataaatt aggtctaacg cttcgtttta gagaatttta tagacagcaa
      781 tctaatgttg aatttacaaa tggaagcggg caaagagttc aaggggatca agctcaaagt
      841 cctacaaagg caaataattt taacatagga acaagaatta gttatttagc taatgattat
      901 aatactttta tatttgatat agatttttca agaaatcatt acgacaataa acaaggtcaa
      961 ttaggaacca tcacaagtcc aggtagtaca caaggtagct taacgggtgg ttatgcagat
     1021 attatggaag ttgataaatt tgtgacttac ttaagtcatg agggtgttta tgaaaatttt
     1081 tctattacct cgactttgca atacaataga gtaagcaata atggtcgcga agttgtagga
     1141 caagcaacgc agccattttt gggagaaaat agagatatag tcgcagaaga tattatctta
     1201 gatacaaaat ctgtcattcc tttaggacag aatcatattt taagcgcagg tggtgaatat
     1261 aggcttgaaa aaatgcaaga taaaatagct aatccgacca attttgatca gtatttattg
     1321 gcaatatttg cagaggatga gtacagcata aaagataact taagattgac ttttggagca
     1381 agatacaatc atcatgaaat ttttggaaat aatatttcgc caagagctta tctggtttat
     1441 aatcctactg atgaacttac tttaaaaggc ggtgtatcta cgggttttag gactccttat
     1501 gcaaatcgtt tgataaatgg agcttataat tatagtggtc aaggtagatt ccctatatat
     1561 ggaaatcctg atttaaaaga agagacatct ttaaattatg aaatagcagc tatttacaat
     1621 aatgatttgt tttatgtttc tgcgacaggt tttttaacaa attttaaaga taaaatttca
     1681 acccaaagat atgacaaaaa taatatgatt ccaggaattg gtacttgtaa tgctgataga
     1741 tgttttagag cgatcaatca tggtaaggtt gagtacaaag gtgtagagct tggagcaggg
     1801 ataagccctc ttgataattt aaatgtaaat tttgcttata cttatcttga tagtgaggtt
     1861 aaagaagcac aagataaaag tgtgataggt aaacctgagc aggatagttt aaaacataat
     1921 attatgttga aaactgaata cagcttctat aataaaatta ccccttggat aaaaggcgaa
     1981 tggcaaatag atcgctatat gggtgatact aatataaata gggaatatta taaggatatc
     2041 tttttagctt ctatgggtgt gcgttatgat atcaataagc aatggagtat caacgcagct
     2101 atttataatc tttttaacaa aagttttaca gatggttggg aatcttatca aaatagcagt
     2161 actactactt gggtcaatac ttacaatcgc atagaagaag gaagaagaat atatatttcc
     2221 attaatggta gtttttaagc tttgatagaa aagccaaaga gcttgtaaag gcttctttgg
     2281 ttttttgttt atagcatctt gtgcttttaa aaaagttaaa ttatcgaatc tatttaaaat
     2341 ttcttatcta attatcaccc tgtttaccaa tattgaaata tatcctatcc ttataaaaaa
     2401 gtaactaata aaactttagt tatatagact aaataaaatt aagtatattt ttttatattt
     2461 atacttgaca aaataacact caatgttgta taatatatct agcaatcaaa aaatagagtg
     2521 ctagatataa aggaaaacat gatgaaaagt cgagataaaa aggatttgat tttagagtct
     2581 attatccaaa cttatctttt ggataatgca cctattggtt ctaatgaatt aaattcaaac
     2641 ctttgtatac ctgcttcgac tatacgcgtt tatcttaaaa gacttagcga tgagggtttg
     2701 atcactcagc ttcatataag tagtggtaga attcctacta ttttaacgat gcaaaattat
     2761 tggcaaagtt tttgggaaaa agaacaagat aaaaatatcc atatcaaaaa cgaaagcttt
     2821 ttgaaagagt taagtaaaga atttgaaatt tattgtcttg tttatggagg tagaagttta
     2881 gtacttaaag aagtactaga tcttaatact aaatttatag tgcttgattt tgaagatgaa
     2941 gagctggttt taaaatacga aaaagaagcg tggaattttt tacaaagtct tatagggctt
     3001 gatctttcta gtatagaaaa aatagctttg agagttcatt ttatagatct tgtagaaaaa
     3061 atagctagct taagacaaaa tttgatttgc tatagaagca atgaagaaag agcttatcaa
     3121 atttatcaaa atgatgaatt tgttaagctc ttagattgtc aaattcaccg tcattttaaa
     3181 gaaagtcttg aatttgaacc tttatttaaa gaaggtttta tggggcttaa ggtagatgcg
     3241 cagtttttgg gcgaagatgt aaatattatc ttagcaggta gtgtttatac ggattataaa
     3301 aagatattac aatacataaa ggaggcggca tgagcgaaca aaagcaagaa attgaaaatg
     3361 aaaatgcaca aaattctgaa aatttgcagg atgatttgca agataatgaa aaaaacgaaa
     3421 caaatgaatt acaaaaagaa ttagaggaat taaaagataa atatatgcgt gcaaacgctg
     3481 aatttgaaaa tattaaaaaa agaatggaaa aagaaaagtt aagcgctatg gcttatgcaa
     3541 atgaaagctt tgctaaggat ttgctcgatg ttttagatgc tttagaagct gctgttaatg
     3601 tcgaatgcca agatgaaatt agcttaaaaa tcaaagaagg agtgcaaaat actttagatt
     3661 tatttcttaa gaaacttgaa aaacatgggg tggctcttat caaaaatgaa aaagagtttg
     3721 atcctaattt acacgaagca atgtttcatg tagatagtga aaaccatcaa agtggtgaag
     3781 tggttcaagt gcttcaaaaa ggttataaaa tagccgatcg cgtgatccgc ccaaccaaag
     3841 ttagtgtagc aaaataaatt ttaataaaag gataaaaaaa tgagtaaagt tataggtata
     3901 gatttaggaa caaccaattc ttgtgttgct gtgtatgaac gcggcgagag caaagtaatc
     3961 ccaaacaaag aaggaaaaaa cacaactcct tcagtggtag cttttacaga taaaggcgaa
     4021 gttttagtag gcgatagtgc aaaacgccaa gcggtaacca accctgaaaa aaccatttat
     4081 tctatcaaaa gaattatggg tttaatgatc aatgaagatg cggctaaaga agctaaaaat
     4141 agacttcctt accacatcac cgaaagaaat ggtgcgtgcg caatagaaat cgcaggtaaa
     4201 atttacaccc cacaagaaat ttcagcaaaa gttttgatga aattaaaaga agatgcagaa
     4261 gcttttttgg gtgaaagtgt tgtagatgcg gtgattactg tgcctgctta ttttaacgat
     4321 gcgcaaagaa aagcgacaaa agaagcggga acgatagcag gacttaatgt attaagaatt
     4381 atcaatgaac ctacttcagc agctctagct tacggacttg ataaaaaaga tagtgaaaaa
     4441 attgtggttt atgatctagg tgggggaact tttgacgtta ctgtgcttga aactggcgat
     4501 aatgtagtag aagttttagc aacaggtggt aacgctttct taggtggtga tgattttgat
     4561 aataaactta tagattttct agctaatgaa tttaaagatg aaacaggcat agatcttaaa
     4621 aatgatgtta tggctttgca acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta
     4681 agttcagcta atgaaactga aattaattta ccatttatca cagcagatgc aagtgggcca
     4741 aaacatttgg ttaaaaaact tactagagct aaatttgaag gtatgattga ttctttagtg
     4801 gctgaaacca tcactaaaat caatgaagta gtaagcgatg cagggcttaa aaaagatgag
     4861 atcaaagaaa tcgttatggt agggggctct actcgtgttc ctttagtgca agaagaagtg
     4921 aaaaaagcct ttaataaaga tcttaataag tctgtaaatc ctgatgaagt tgtggctatc
     4981 ggtgcggcga ttcaaggtgc ggttataaaa ggtgatgtaa aagatgtgct tttacttgat
     5041 gttactccgc tctctttggg tatagaaact ctaggcgggg taatgactaa gattatcgaa
     5101 aaaggtacaa ctattccaac taaaaaagag caagttttct caaccgctga agataatcaa
     5161 agtgctgtaa ctatcaatgt tttacaaggg gaaagagaat ttagtcgtga taataaatct
     5221 ttaggaaatt tcaaccttga aggaattcca ccagcaccac gcggtatgcc acaaatcgaa
     5281 gttacttttg atatcgatgc aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca
     5341 ggtaaggctc aagagatcaa aatcacaggt tcgagcggac ttagcgaaga agaaattaac
     5401 aacatggtaa aagatgctga acttcacaaa gaagaagata aaaaacgcaa agaagctgta
     5461 gatgctagaa atgcagctga tagcttggct catcaagtag aaaaatcttt aagtgagttg
     5521 ggtgaaaaag ttgccgctgc tgataaagaa aatatccaaa aggctcttga tgatttgcgt
     5581 gagaccttga aaaatcaaaa tgcaagcaaa gaagagattg aaggtaaaat gaaagcttta
     5641 agtgaagttt ctcataagtt agctgaaaat atgtataaaa aagatgagcc aaacacagca
     5701 aatgataaaa agaaaaaaga tgacgatgta atcgacgctg aagttgagta atcttctaaa
     5761 atcttcattc aagccttgtt aaaaggcttg aactcaattc tattttatct tatttaattt
     5821 ttaaaaattt tttagtagtg attttatata atatattatt aataaaaata taaggaacac
     5881 attatggaac aaagccaatt ccagcccatt gtcaacttta tatggagtgt ggcagatgat
     5941 ttgcttcgtg atgtttatgt aaagggcaaa taccgcgatg ttatcttacc catgacaatc
     6001 ataagaagag ttgatgcggt tttagagcct acaaaagata aagttcttaa aacctacaat
     6061 acctataaag atgaatttga aaatttagaa tctttgctag gtggaaaaca agggaataaa
     6121 ctaggctttt ttaattattc tcgatttaat ctacaaaccc ttctaaacga tccaaaaaac
     6181 ataagaataa attttgaaaa ttatcttgat tgttttagtg aaaatatcaa agatatcatt
     6241 ttaaaattta aattcaaaaa ccaactcgat accctagaag aatccaatat actttttggt
     6301 gttatagaaa gattttgctc gcctaaggta aatttcggta tagaagatat tttagatgaa
     6361 aaaggtaatg ttatccataa aggcttgagt aatcttggca tggggtatgt ttttgaagag
     6421 cttatccgta aatttaacga agaaaataat gaagaagccg gagagcactt taccccaaga
     6481 gagattatag agcttatgac tcatcttgta tttttgcctg taaaagagca gatcaaacaa
     6541 ggaacatggc ttatttatga taatgcttgt ggaagtggtg gtatgctaac agaatcaaaa
     6601 gaattcatca cagatcctga aggacttata cagtcaaagg caaatattta tctttacgga
     6661 caagaaatca accctgaaac ttatgctata tgcaaagcag atatgctgat aaaaggcgaa
     6721 aatccagagc gcataaaatt tggttctacc ttaagcaatg atcaacaaaa cttacaattt
     6781 gatttcatgc ttagcaatcc accttatggt aagtcttggg aaaatgatca aaaaattcta
     6841 ggcgtggaaa agaaaggttc aaattcaact tgtaatgatc caagatttag tgtaggcatt
     6901 acaagcaaaa gcgatggaca aatgatgttt ttgcttaata tgcttagcaa gatgaaattt
     6961 gacacccctt tgggttctcg tatcgcaagc gtgcataatg gaagctcact ttttaactca
     7021 gatagcggta tggtagctat aagaaagcat atcatagaaa acgactatct tgaagctata
     7081 gtcgccctac ctactaatat gttttataat acaggaattc ccacttttat atggatcatc
     7141 accaacaaaa agtcagaaca caaaaaaggc aaagtccagc ttataaacac tacaaatgaa
     7201 gaatattttt caaaaatgaa aaagtcttta ggctctaaac aaaatgaaat aactaaagaa
     7261 catatagaaa aaatcactaa attattttta gaaaatgcaa gtaataaaga ttgcaagatt
     7321 ttggataatg aagactttgg ctatactaaa atcatcatag aaaaaccaaa aagcatagaa
     7381 gctttaaaag atgatgaaaa atttgcaaaa ctaaaagaca aagataaaat cttagaaaaa
     7441 ttacaagaat tagaacaaaa tccacaagac tttaaaaaca gagaagaatt tatcaaattt
     7501 ttaggcgtaa agctcaaaaa aagcgaagaa aatctcatca ttgatagcga taaaactaac
     7561 aatactgaaa aaattccact caaaacaaat atacaaggct attatgacac agaagtaaag
     7621 ccttatgtag caaactcttg gatagcgtgg gagagtgtaa gtgtgggcta tgaaatactt
     7681 tttagcaaat atttttatac ctacacacca ccaagaaagc tagaagagat aaataacgaa
     7741 ttagaaaagc tagaaaaaga agtgcaagat cttttaagag agattgtgca atgaaaaatt
     7801 tcaaagagag tggcatagaa tggcttgggg aaattccgga gcattgggaa gtggtgaaaa
     7861 tcaacaagat agtaactttt gtaaatggat atgcttttga aaactttgat tttaatccaa
     7921 tttttgaaat tcctgtgatt cgtatcggag atatgcaaaa ggaaaaaatt ttatatgaca
     7981 attgcctaaa aacaaaagaa aaagaaaaat tgaaacaatt tttaattagt aataatgata
     8041 ttttaattgc tttaagtgga gcaaccacag gaaaaatagc attttgtgat actgataata
     8101 aagcttatat caatcaaaga gttgccattg ttagaagtaa attaaaactt gtaaaatatt
     8161 attttttaac tagaggattt tcattactta ttgagcttgc ttgtaatgga tctgcacaac
     8221 caaatatttc aaccaaagaa ataggggaat ttaaaattcc acttccacca ctaaaagagc
     8281 aagagcaaat tgcaaatttt ttagatgaaa aatgcaaaaa aatagcaaat ttcatagaga
     8341 aaaaagaaaa actcatcaca cttttaaaag aacaaaaaca agccctgata aatgaaacta
     8401 tcacaaaagg acttgataaa aatataaatt tcaaagatag tggcatagaa tggcttggag
     8461 aaattccaca acattggagg attgtgaagc ttaaatatgt agcttttaca aacataggat
     8521 tggtttatac tccagatgat attattgaaa atcctgatga aggatatcca gttttgcgtg
     8581 ccaataatat tcaaaatgga aaaatagatt atcaagattt aatttatata aagtctaaac
     8641 aaattggaaa aaaacaaatt atctccagtg gagatttatt aatgtgcgtc agaaatggta
     8701 gtgaaaatct tttaggaaaa acagcaaaaa ttcaagatgg atatttttct tttggagctt
     8761 ttacagcaat tatcaaaagt caatttaatg attattttta ttggattttt caaacaaata
     8821 tgttaagaaa atctattgct agtttttctg cttcaaatgg aattgggcaa atttcacaag
     8881 acgatattaa aaattttatt atatcttttc cacccctaaa agaacaagag caaatcgcac
     8941 aatttttaga ttctgaaatt tctaaaatag ataaaattat agaaaaaacc aaaaaacaaa
     9001 taaaactcat aaaagaatac aaaaccacac tcataaacca agcggtttgt ggtaggattg
     9061 atttataaaa ggagaaatat ggaagaaaat aatttagaat atataaaaca aaattttcaa
     9121 attcattatt attttgatga taactctcat tcaatgaatg cttttgttcg taatgctatg
     9181 gaaaaagatt ttttaaattt tattaatgaa ataggaaata ttttagatat taaaattaaa
     9241 cttgaaagtc aagcaagaga agaaggtggg ctaaaggaaa atataataat atgtttaata
     9301 gggtccgctt tatgttattt tgctccggcc gtaaataata ttttaacttt ttacttaaca
     9361 gaacaaaata agttacaaaa tgcagatttg aaattaaaag atcttgagct taagctaaaa
     9421 gaacttgatt tgaaattaaa agaagaagaa ttaaaaaata aaaaaactca aaatgaatat
     9481 attaaaaaaa tagaagaaaa tcataaaata tatagattat tatcaaattt ttataaaaaa
     9541 gtagaaaatt atgaaaaaat taaaaaaata ggatatcaat ttaacaattc aaatgaatta
     9601 attattgaac gagaacaatt taaatctttt attattgaag agaataaaga tatagaaacc
     9661 attgaagaag ctgaaataga aatcatatca cctgtattaa aagaaggtaa atataaatgg
     9721 aggggtattt ataatggaga aaaaattgat tttagtatgg gtgatagtgg ttttaaaaat
     9781 gctgtcatta ggcaagaata taattttatt aatggaacga ctattaattg tcaattggaa
     9841 atcagtaaaa cttttgatga ttatggagaa gaaattaaaa catcatatag agtaaaaaaa
     9901 gtttatagta tacaagctaa tgatatttct aaaattacaa aatttggcca gaaaagaaga
     9961 aaacaaaaag aagaaagttt agaaccaact ttatttgatt tcacaaaaga tactaaggac
    10021 taacaatgac taactaccaa gaaaaagatt tagaaaattt catagagtct tacttgttag
    10081 aaaaccatgc ctatatcaaa agaacaaatg aaaattacga taaaaattta tgtttagatg
    10141 tagagctttt tgaaaatttt ttacaagcta cgcaaagtgt agcacttgaa gagcttaaaa
    10201 agcgttgcgg acaaaactat aaaaaagaac tttttgatcg tattttctcg cagattaaaa
    10261 ccaaaggcat agttaaagcc ttgcaaggct atgtagagat caaaggcatc aaaatttacc
    10321 tagcctttgc caagccaaat accaatgcaa acgaagaaag cgtgaaaaaa tacgagcaaa
    10381 acagcctttc tatcatacgc cagcttcact atagcacgca aaataaaaac tcccttgata
    10441 tagtgatctt tttaaatggc ttgcctctta tcaccataga gcttaaaaac catttcacag
    10501 gacaaaatgt ctttcacgct ataaagcagt ataaaaaaga cagaaaccca aaagaagcta
    10561 tatttaacta tacgatagtg cattttgcgc tagatcatga tctttgttac atgagtacga
    10621 aattagatca agatgcgact acatttttac cttttaacct tggtttaaat aatggtagtg
    10681 gcaaaatagg cttagcaaat ggagcaggta atccttcaag tgatggtata aaaacagctt
    10741 atttgtggga gaaaatcttt aaaaaagata ctttgctaaa tttatttttt aattttgtgc
    10801 aagttgtaaa aaagaaaaat gaagaaatca tcatatttcc tagataccat caattcgatg
    10861 tagtagaaaa gctactcgcc catgcaaaag aaaacggcac agggcaacgc tacttgatcc
    10921 agcatagtgc aggaagtggc aagagtaatt ctatatcttg gcttgcacat aatctcgtaa
    10981 gcttgcatag acttgaaaaa aatatctttg attctatcat cgtagtaacc gatagaaaag
    11041 tgcttgatag tcaaataaga gaaaatgtaa aatccttttc gcagacaaaa aatttagtag
    11101 aagttatcac tcatggaagc aaacagctta aaaatgcttt agaagaaggt aagaaaatca
    11161 tcatcacaac catacaaaaa tttcctttta ttttagatga aatcaaaact ttaaaaagca
    11221 aaacttttgc tatcattatc gatgaagctc attcaagtca aagcggaagc aatgctcaaa
    11281 aaatggcaga agccataagg gataaaagcg gcgatgaaag tcaaaattta gatgatgaaa
    11341 ttttagaaat cataaaaaat aaaaaactcc aaagtaatgc ttcttatttt gcatttaccg
    11401 ctacgcctaa gccaaaaacc ttagaaatgt ttggtatgcc ttgtgatgtt aatggagaac
    11461 aaaggtttat cccttttcat ctttactcga tgaaacaagc catagaagaa ggatttatac
    11521 ttgatgtact aaaagattat acaacctata aaagttatta taaaatcata tcttgtacaa
    11581 atgataatcc aaaatacgat aaaaaaagag ccaacgcaaa actaaaagct tatgtgcaaa
    11641 acaatatcag aacaatcgag caaaaatcac aaatcatgtg cgagcatttt ttccaaaaca
    11701 gctttaaaaa gataaaaggt aaagcaaaag ctatgatcgt aacaagttca agagagaatg
    11761 ctgtgaagta ttatcttgtt tttagggaat atttaagaaa aaattatcca cattttaaag
    11821 ccattgtagc tttttcaggt gaagtaaatt tagaaggtga aatttatagc gaaagtgctt
    11881 taaatggttt tgcggaaaat gttttaaaag atgagtttaa aaaagatgag tatcgttttt
    11941 taatcgttgc ggaaaaatac caaaccggat ttgatgagcc attattacat actatgtatg
    12001 tggataaagc attaagtggg gtaagtgcag tacaaactct atcaagacta aaccgaactt
    12061 gcaaaaacaa agaaaacact tttgtgctag attttgtaaa tactcatgaa gatatagcaa
    12121 aatcttttag tgtgttttat gagcaaactt atttaagtga agccacagat gataatagaa
    12181 tttttgattt aaaggcaaat ctaaatgagt atgaaattta tacccaagaa gaaatagatg
    12241 attttgcaaa tgctatttta agaaaagaaa aagaaaatat cattcatgca aaattggaca
    12301 taatgctaga tagatttaat caaaaaagtg atgatgaaaa attagatttt tataataaag
    12361 caaaaactta tcttaaagag tattcttttc ttgcacaaat attgccttat gaagacatag
    12421 agcttgaaaa actctatata ttacttaaaa aacttgctag taagatcatc ttgcctaaat
    12481 cagaggattt agctaaagga attttagata atgtggattt tgatagttat cgcttgcaac
    12541 ttgataaaac acaagacatc gttttacaag gaaatggaga gctaaagcct tcgtttgcag
    12601 atggttcgag caaaagtgtt gaagctgaat tagaagaact ttcaaacatc atcaaagatt
    12661 ttaataacaa atacgcaaat atagacttta atgaaagcga taaaattgct aaaatcttat
    12721 atgatataaa agatgatata gcaaaaaatg aaagaatacg tgaaactttt agcaaatccg
    12781 atatacaaaa ttctcgtatc gagtttgatg cgcttttaaa agataaaatt caagatatct
    12841 tggagttaaa tttagaactt tttaaacaat ttaatcaaaa tatagaattt aaagacaaga
    12901 tagcaaatac catgtttaat atggtttgta atgattttta aagtataaaa ttgtcaaaaa
    12961 aggataaatg tttgtgagtg tagatttttt taaaaccttt gatatttcaa ataatgaaag
    13021 attaaaagct aaaaaagtgc agggtaaaaa atatgaaatt tttcttaatg aaaatgagca
    13081 aagtcttata actcctaaag tgtcttttaa agaaattttg aggtattatt atctttatcc
    13141 taaaaatgcc attccttctt ttaaattacc tttttttaag cctgatttga gtgattttag
    13201 caccccacat attacttggc ttggccattc ttcgcttttt ataagtttta aagagtataa
    13261 aattttgatt gatcctattt ttaacactca tgcttcgccc atttctttta tcaacaaggc
    13321 ttttaaaaat gctcctgttt ataatataaa tgattttaat gaaatttttg ctgtgattat
    13381 cacgcattcg cattttgatc atttagatgc taagagtgta aaagctttaa aagaaaaagc
    13441 acgatttttt atcacacctt taaaagtggg aaattatcta aaaagctatg gggtgagcga
    13501 gaaaaaaatc atagagcttg attggtggag tggaatagaa tttggtgatt taaaaatcat
    13561 tgcaacacct gcacagcaca gttcaagtag gggagatggt aaaaacaaaa ccctttgggc
    13621 ttcttttgtg atggaatttt taagtgtaga taagagagtg ttttttagcg cagatggagg
    13681 gtattttacg cattttaaaa aaatagctga gtattttgga gattttgact tagcttgtct
    13741 tgaaagcgga caatttaata tcgcctggcc atattcacac tcttttcctg agcaaatttt
    13801 aaaagaagca aaagatctta atgcaaaagc tgtcatgcct atacattggg ggagattttt
    13861 agcaggaact catgcgtgga atgaggtggt aaaatttctt tatgaaaatt tagatttacc
    13921 ccttatcaca ccaaaaatgg gcgaggctta tgaagtagga gctaaattta aacaggattt
    13981 ttggtggaaa gaagaataaa ttaacacaag tttataattt atattttggc ttttgctata
    14041 gttttataaa actaaaaaag gagattttgt gaaaatcatt caatggaatg gagcagaatt
    14101 tagcccaaaa gaagtgaaaa tcaatgtttt aattgacaat gaaaaaggta aagaaattca
    14161 aattttatta gctaaagata gcgtgatgaa agagcataaa gctccttttg ctatacatgt
    14221 tcaagtttta agcggtaaaa tttggtttga agtggaaaag gaaaaatttg aattaaatgt
    14281 tttagatatg ataagcctag aggcaaatgt agcgcattct ttaggtggat tggaaaattc
    14341 tataataaga ttgagtttaa ataaatcaga tagtgttcaa agggtaaatg ctgtgcttaa
    14401 aaagccttaa agtaatttta aggctttagg gcttaataag aagcaatgaa atttgctatt
    14461 ctttctaaac cttttttgat aagctcatcg cttgtggcat aagaaagcct aaaatatcca
    14521 tccattccaa aacctatacc tggaacaacg gcaacttttt cttgttcaag caatttttgg
    14581 caaaatttca tagaatcttt ttctattttt tgtatattta caaaaagata aaaagcacct
    14641 tctggtttat aaacactgat atttgggatt tgtttaagta tgtctaaggc taagttacgg
    14701 cgtttttcaa aggcttgacg cattttttct atatctttat cacattctcc atttaaagca
    14761 ggaatggctg catgttgagt gatggagcaa atatttgaag tgctttgtcc ttgaagtctt
    14821 ttaacggctg aaattagggc tttatttttg cttgccatat agccaaaacg ccatcctggc
    14881 atagctccac atttgctaag tccgttaatg gtcacagtgc gttttaaagc atctttgctt
    14941 acacttgcaa aagctacaaa atcaaaacca tcatagcgaa gtttttcata catttcatca
    15001 cttaaaacag tgatttgcgt tccttctaaa actttagcaa tttgagttaa ttcttcttta
    15061 gaataaatcg atcccacagg atttgaagga gaatttaaca ttaaaacctt ggttttagct
    15121 gtgatagctt tttttaattg ttcagcggta attttaaagc cattttcttc taagccttct
    15181 ataaatacag gttttccacc tgcaaatttt accatttcag gatagcttac ccagtaagga
    15241 ctagggataa tgacttcatc atctttttct actaagcatt ctatacattc aaaaagagag
    15301 tgttttgcac ctacattgct gatgatttca tttgtttcat aatcaagatt attatctttt
    15361 ttaaatttgg tttgaatagc ttttaatact tcaggaattc ccgcaatagc agtgtatttt
    15421 ccacatcctt tttcaatagc acttatagcg gcatttttga tagtttgtgg tgtgtcaaaa
    15481 tcaggttcgc ccgctgaaaa actaatgata tcctcgcctt tagctttaag ttcattggca
    15541 agtgcagtga tggctaaagt gatagattct tctaaaactt gagatctttt tgtaagcatt
    15601 tttcaatcct taatagtttt tgt
//
LOCUS       DAQSLY010000028        15261 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.028, whole genome shotgun sequence.
ACCESSION   DAQSLY010000028 DAQSLY010000000
VERSION     DAQSLY010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15261
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.028"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            22..651
                     /locus_tag="R2H98_000702"
     CDS             22..651
                     /locus_tag="R2H98_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023598.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(687..1331)
                     /locus_tag="R2H98_000703"
     CDS             complement(687..1331)
                     /locus_tag="R2H98_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEE9023599.1"
                     /translation="MNKKLLSIIASATLSSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FTTHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(1469..1852)
                     /gene="queF"
                     /locus_tag="R2H98_000704"
     CDS             complement(1469..1852)
                     /gene="queF"
                     /locus_tag="R2H98_000704"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEE9023600.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            2012..2611
                     /locus_tag="R2H98_000705"
     CDS             2012..2611
                     /locus_tag="R2H98_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEE9023601.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELIPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(2616..3497)
                     /gene="metA"
                     /locus_tag="R2H98_000706"
     CDS             complement(2616..3497)
                     /gene="metA"
                     /locus_tag="R2H98_000706"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEE9023602.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(3581..4852)
                     /locus_tag="R2H98_000707"
     CDS             complement(3581..4852)
                     /locus_tag="R2H98_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEE9023603.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKISQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGSALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(5277..7889)
                     /gene="flgE"
                     /locus_tag="R2H98_000708"
     CDS             complement(5277..7889)
                     /gene="flgE"
                     /locus_tag="R2H98_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEE9023604.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAQSTEVAIKANLNSGLNIGTASRPLYSLDSVHGFNQKTGETKDENDAGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGTGLNLRDGQGIWVSYADAKYSTNSLGYNAFNS
                     NLQQNQTAAFWGNGNQKTRLDIVINGVVIQNDTIGSIDEAIAYINTFTAPTDAREGTG
                     VRAVKNADGSGIDFVNDNADGTTDNMKNINLVVNANNTAGELWNAVWNNNTQTFSFNQ
                     GNGGQQPAINKNGSSLWTATGQNLTPAPPAPGPITQIQFTGPANAQIITAHKYIYSSS
                     PQTLPPMYNPDGGFNYIPGTPGNPPTWNGTDAATIGSQNYYNAVMNGSLLNTNIRTFH
                     TTEDLRELLQRDARYGVDYDGSGTFAAADVNENVKVVVNSSGAFSLTNVNETSNSPIL
                     VTGQGALTFGSHNMNFNITAYTDERGTVSTNDAFTKIFKGLDGSFPAGNQVKQSELLK
                     LSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNN
                     IIVGTARFNNDGSLSNYNPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTL
                     TGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGN
                     LFKVTANSGNIVVGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTIS
                     TSDQMLQTLIQLKQ"
     gene            complement(8093..8575)
                     /gene="ruvC"
                     /locus_tag="R2H98_000709"
     CDS             complement(8093..8575)
                     /gene="ruvC"
                     /locus_tag="R2H98_000709"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEE9023605.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            8671..9993
                     /gene="dnaA"
                     /locus_tag="R2H98_000710"
     CDS             8671..9993
                     /gene="dnaA"
                     /locus_tag="R2H98_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEE9023606.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAVAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            10153..11220
                     /locus_tag="R2H98_000711"
     CDS             10153..11220
                     /locus_tag="R2H98_000711"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEE9023607.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFVRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            11249..13558
                     /gene="gyrB"
                     /locus_tag="R2H98_000712"
     CDS             11249..13558
                     /gene="gyrB"
                     /locus_tag="R2H98_000712"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEE9023608.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVIDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(13584..13925)
                     /locus_tag="R2H98_000713"
     CDS             complement(13584..13925)
                     /locus_tag="R2H98_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEE9023609.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASKKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAIFLQNKTH"
     gene            complement(13928..15166)
                     /locus_tag="R2H98_000714"
     CDS             complement(13928..15166)
                     /locus_tag="R2H98_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEE9023610.1"
                     /translation="MKQNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWTYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         5388 a         2485 c         2356 g         5032 t
ORIGIN      
        1 taagtaacaa aaaggaagtt gatgttaaaa gaactcttag agattaaaaa agaaatggaa
       61 cctgttatcc acgaagccaa tgtgaaatta aatgtcctag ctcgtgaagt catagtccga
      121 aaaaaagaat acgaaattta tgggcctatg gtagatcgtg tttatcttga taatgccatt
      181 tatgttaaag ttatgtcaag tggacgcgat gtaaaaacag acaatgtgac tataaaaaat
      241 ggtttttata tggtttttgt tgcccctgaa aaagaaagta caaaagatat caaaaataaa
      301 ctcaaagtag cttatgaagg acttgataac aaatttatcg ctacacttat acgatcttgc
      361 caacgcttta aagagatcat aaacaaaacc caagctacac ttgctaaagc ttctaaaatg
      421 aatgtggtag taaaaacgaa tttaggtgaa gcaagtgctg ctctaaaatt taacatcact
      481 atagaatata ctaaagagaa tcaaaaactc actcgtgaaa attcaaaatc agcaggaagt
      541 ttcagagata ctaaaactta tatcaatctt gtagtagaaa aaaatacaga ttctcaaatt
      601 tgtgaaaaac tacttgatga tgttgaaaaa tactttatcg gtggaggttg atttcattaa
      661 tgcaagttat aaaaacttgc attagattaa aatttataat tatatcctaa atatacacca
      721 taatttgttt gtttaggatc gtaaaagttt gaacccactt tattttgata aaaatttcta
      781 gaattataat gaatttgctc tgctttaaag cctaattcta tttcattatg tggtgtcaaa
      841 tcatataaag cacctatttt cgctccataa aaataaccgt caaaattttg cgacaaagat
      901 aaaaagcttg tttttaaggt aagatctgtt cttgcatatc ctccatacac acctaaaaca
      961 gctctggttt tttcaaaaag cttaggagta aaatcataac ctgttaaaaa tttatgtgta
     1021 gtaaaatcac cttcgatttg aattttagga gttttgataa aatcactaaa ttcatcagaa
     1081 taattataac cagcataaat tctatgattt tcatttagac gatatccaag ttttagacca
     1141 aacgatggta tattacctga aatatctcca ttaaaatttt gctttgtatt cttatgtttt
     1201 aactcacttt ttacttgagc atgcatccaa gctgcatcag cacctataaa aaaaccagaa
     1261 ttctcatctg ctaaagccaa atttgaagac aaagtagcac ttgcgataat gcttaataat
     1321 tttttattca taacctaact ccttataata aaattcgatc taaaaaattt agatcttttt
     1381 atattatata ttcttcaaag attaaataag aattttttat aaaatactta atctttacat
     1441 aaaaatatgt taatatttta cttaaatatt actttggcac taccatatcg ctacgacatt
     1501 ctatcaccgt atgtacattt ccacgcgggt taaaatcccc aacaacttta atccattttg
     1561 gttttaattt atcttttaaa gtattataaa tttcattgat acttgcttca tgtgaaacat
     1621 ttctatacat aaaagtattg atataaagtt ttatcgcttt aagctcaacc acaaatttat
     1681 caggcatata ctcaagataa atcgttgcaa aatcaggata acctgaacgc ggacaacaac
     1741 acataaattc aggcaaggtg attttaatga tatagtcatt tttagcatca tttggccaaa
     1801 tttccatatt ttctacatca aattctttaa tttctttttc accataacgc atgagctttc
     1861 cttattgaaa atttttagaa aattatataa aaaattactt ttagagcaat tgaaaaataa
     1921 acatttttag caaattgcat aaaaaagaca aatattatat taaataaagc tttttatact
     1981 agaataaggc aaatctttca aaaggaaaaa aatgagaaaa tcaattgcaa ttataggcgg
     2041 tagcatcgca ggacttagcg cggctttatt tttcgcttca gctaaaaatg aagaacttga
     2101 ctttgatatc actgtttttg atgagggtaa agcagattta aaagcagcag caatttacaa
     2161 tgttcctttt ttcccaaaag gtgcaaaagc agatgaaatt tacactcaca taaaagcaca
     2221 aattgcttct atgctcgaag taaaatacat cgattcaaaa gtagtaagca taagcggaga
     2281 aaaaggagat tttactgtta atgatgagca aggcttgggt ataaaagcag attatatcat
     2341 cgtagcaaca ggggcaaaca aaagcgatat caaagaactt gaagattttg taataccgca
     2401 tgagcttata ccaaaaccaa acaaattttg cttcaaacat cacgggagac agattatcaa
     2461 agaaggaatt tacgcagcag gacttgcttc aggtgttacg actatggtag cttgcgcgat
     2521 gggaagtgcc aatgaagcag cttgcgcgat tttaagcgat atcaaaggtg cagtaagcgt
     2581 atatcacgat acacctacta caagagttta aatcatcaaa gcacaaaagg tgtgctttga
     2641 tacacatcat aattgagcca atttgcaaaa atggtatttg catttgaacg ccaattgtat
     2701 tttatattgc cctttttatc ataataattt ttagcttttt gtatgaaatt atctcttaca
     2761 tattcttgat gtaaagtctc tttaaaatat tccaaatgcc ctaaaataaa aatattcttt
     2821 tcatctctta ataaagccga accgattttt ttatttctaa gcaaaatttt taatttccct
     2881 tgtttttgta gtgctaaaat ttgctcttca tccatgctag aatgtcttga atgaggcatt
     2941 aaaacctttt catctaaatt tgttaaaagc agatcaggcg aaactttatc atgcttatag
     3001 actccaaaaa ttttcttatc taaagagatt ttatccacac cataaaagta ttttaaagca
     3061 gccatggcac cccaacaaat atacatagaa cttgttacat tttgctttaa aaaatcaaaa
     3121 atttctagca attcttccca gtaagcaacc ttttcaaaat ccatttgttc cacaggagct
     3181 cccgtaacga tagcaccatc aaatttatgt tttttaacct cttcaagacc cttgtaaaat
     3241 ttttccaaat gagtaaaagg agtattttta cccacatagc tagtcgtggc taaaagtgtg
     3301 atatttactt gtaaaggaga atttgcaagt aagcttagaa tttgattttc tgtttcaatt
     3361 ttttttggca taagattgac aatcaaaatt tcttgcggcc tgatatcttg atgctttgct
     3421 ctccttaatc ccatgataaa agcatgctct tttaaaagct cataagcggg tatattttct
     3481 ggaataatca gtggcatttt ttctccttta tttaataaac cttatttatg ataaagcatg
     3541 gtggaatttt tatctcattc cactcaatgc aaacacactt ttaactttct atagcttgtt
     3601 ttaaatccgc tatcaaatca tcgctatttt caagtcctat gcttaagcgt atagtagctt
     3661 tcgtaatgcc tgctttttgg agttcttctt cgcttagttg cgaatgagta gtagaagcag
     3721 gatggatgat caaagacttg ctatcaccca aatttgcagc aagtaagaaa agttgagttt
     3781 tatcacaaat tcttctagca tgctcataat ctttagcttc aaagcttaaa agcccgctag
     3841 caaaattttt atcaaaatat tttttaaata aattatgata agcattactt gctaaagtag
     3901 gataatttac gcccttgata tcaggatgag aatttaaaaa attcgcaact ttttcagcat
     3961 tttgactgtg tttttctata cgcactgcca aggtttcaag tccttgtaaa agtaaccaag
     4021 cattttgagg tgctaagcta gctcctagat ctctaagcca agtgatgatg actctaatac
     4081 taaaaatcgg caaatcaagt gtatttaaat tcagtccatg ataacttgga tcaggagtgt
     4141 taaaagcttt atatctatcg ttatttttaa gcaagtcgtt taaatctttt ctttctataa
     4201 gtgctccacc caaagcactg ccttgaccgc ttacatattt acttaaacta tgcacgatta
     4261 catccacgcc atgtttaaaa ggttggagta agaaaggagt agcaacggta ttatcacaaa
     4321 tgctaacgat tttatgtttt tttgctattt ggcttatttt ttctatatca gctatggcaa
     4381 tttgaggatt tgaaagactt tcgaaaaaaa tcgcttttgt gttttgatct ataacttttt
     4441 ccaagctatc taaatcatcg atatcaaatt ccctagcttc tatgccaaaa tttttaagtg
     4501 tgtgagaaat taaagtttga gtcccaccat aaattttgtt cgaatacgcg acattatctc
     4561 ccgaacttgc taaattgata agagcataaa aacaagctgc cataccgcta gcaacaggaa
     4621 ttccaaaagc ccctccttcg acattagcaa gtctttgtcc taaaacatcg cttgtaggat
     4681 tgctaagtct tgagtaaata ttgccaagtt cttgaagatt aaaccttgct gcagcttgat
     4741 ccaaattttc aaaattatac gcagtgtttt gatatatagg cacactaata cttctttgag
     4801 tatcaaaatt ataagctccg tgtaatgcta aagtttcttt attgaaattc attttttatc
     4861 cttattgtat caatgaaaaa atgttaaaaa gctttttatc ggctttaaac taggctattt
     4921 gaaaatgtaa atttatagaa tataagtata tacgagtaga ttaagcgtgc caagcacgca
     4981 tacagaaaga agaaagcatt aagttaaaac taatataaga cattttttct cctttctaaa
     5041 aaattattga ttattctatc tttaaaaaat aaaattaaaa ttaaatttta aaaaatttat
     5101 atcacattgc ttaaaatttt attgcaactc acccctagca agagtgagtt agcaataaat
     5161 tgaaggcagt tcaagcctaa gcctagtatt acaagactac caagataggc ttgtaaagca
     5221 aggcttgctc ccttaaggga gcaaaaaaca atattttata gaatactaag cttaaattat
     5281 tgtttaagct ggattagagt ttgaagcatt tgatcactcg ttgaaatggt ttttgaattt
     5341 gcttgataac ctctttgaat gataataagc tctgttaaag aacgacttaa atccacattt
     5401 gacatttcaa gagctgaggt tttcatttca ccacgacctc ctgttcctgc ttcacctact
     5461 acgatattac cactatttgc agtgacttta aaaagatttc caccaatttc ctcaagacct
     5521 gagttatttg ccactgaagc cattgctatt tttgctacag caaaggtttt gccattagta
     5581 aattcaccta agatattacc tttgtcatcc acacggatag catcaggttt taagttacct
     5641 gaagtataac catcagttgc ctgtcctgtt agagttgaag cagaatttga gcttacaagg
     5701 ccgtcattgc ttccacttgt tccaaaggaa agtttgattt gttgatttgg tgcggcacca
     5761 ttatttggtg aaaaatttat cgttcttgga ttataatttg acaaagatcc atcattatta
     5821 aatcttgctg ttcctacgat gatattattt ggtccttcgc ctgtagtgtt aatctctgca
     5881 ggttcgggta cacggatgat catttgccat tcattacccc catcttgagt ggtgctttgc
     5941 ttaacaaact gcacttctaa agtatgtttt gaacctaagg aatcataaat ttcaagtcct
     6001 gctgaaaaag cagaaagttt tagaagttca ctttgcttaa cctgattgcc tgcagggaaa
     6061 gaaccatcaa gtcctttaaa gattttagta aaagcatcat tagtgcttac tgttcctctt
     6121 tcatctgtat aagcagtgat attgaaattc atattatgag agccaaaagt caatgctccc
     6181 tgacctgtaa caagtattgg actatttgaa gtttcattaa catttgtaag agaaaaagct
     6241 cctgaagaat ttactacaac tttaacattt tcattgacat ctgctgcagc aaaagttcca
     6301 cttccatcat aatcaacccc atatctagca tctctttgta aaagctctct taaatcttcg
     6361 gtagtgtgaa aagtccttat attggtattt aataaagaac cattcattac tgcattataa
     6421 taattttgcg aacctatagt agcagcatct gtaccattcc aagtaggggg attacctggt
     6481 gtacctggaa tataattaaa acctccatcg ggattataca taggaggaag agtttgaggc
     6541 gaagaactat agatatattt atgcgctgtt attatttggg catttgctgg acctgtaaat
     6601 tgaatttggg taattggccc gggagcaggt ggagctggag tcaaattctg tccagtagca
     6661 gtccataaag aagaaccatt tttattaata gcaggctgct gaccaccgtt accttggtta
     6721 aaactaaatg tttgagtatt attattccat acagcattcc aaagttcacc tgctgtattg
     6781 ttagcattaa ctacaagatt gatatttttc atattatctg tagtgccatc ggcattatca
     6841 ttgacaaaat ctatacccga gccatctgca tttttaaccg ctcttactcc tgttccctct
     6901 cttgcatccg ttggtgcggt aaaggtattg atataagcga tagcctcatc tatactacct
     6961 atagtatcat tttgaataac aactccatta atcactatat ctaatcttgt cttttgatta
     7021 ccattacccc aaaaagcagc agtttgattt tgttgtaaat ttgaattaaa agcattataa
     7081 cctaaagaat ttgtagaata tttagcatcc gcataagata cccaaatccc ttgtccatct
     7141 ctaagattta atcctgtgcc attagcatta aaaagtgatc ctgcatccac acccttttcc
     7201 gtcacttcta cagcattttt agaagtcgta taaaactgag tggttcctgc atcattttca
     7261 tctttagttt cacctgtttt ttgattaaaa ccatgcacag aatcaagaga atacaaagga
     7321 cgacttgctg ttcctatatt taaaccacta tttaaattcg ctttgatggc tacttctgtg
     7381 gattgcgctg cagggatatg cataccggga tcgataaaaa tattttgcgg agttcttgag
     7441 ctatctatac tttgagtatc ccagttgata ttccaccctt ggacaacaaa acctgcatta
     7501 ttaacaaaat ttccataagc atcgagttta aaatccccgc tccttgtaag atagcgagta
     7561 agccccccat catcactaac cataaaaaaa ccatcgccat ttatagccac atcagtgttt
     7621 ttatctgtgg tttgaactga accttgagaa tgaattctag ttgtagaact tactgaaacg
     7681 ccaagaccga tttgaagcgg attagatccg cctcttccat cagttggagc tgtagcaatt
     7741 ttcacagttt ggctaaacat agtcccaaaa tctgcacgag agtatttaaa accagtggta
     7801 ttaacatttg aaatgttatt accttcaaca tccatcgcaa cttgatgtgc ttgtagtccg
     7861 cttacgccag accaaagtga tctcatcatc ttaaatcctt tataaaatat tgctttaaaa
     7921 aatttaacgc tttggcttta aaaaactttt gcgtttatgt gaagtttaca agcaaattct
     7981 gttccaactt ttgaaatttt ttatgaattt tttaaaaatt tatagaaaaa atttaaaggt
     8041 attttaggag tttatgaagc tttgggcttt tgtgtaataa aaattactaa aatcacaccc
     8101 taactcttaa atttgctgca tgggttaaag ctactgcaat agcatctgtg atatccaaag
     8161 gcttgatatc tttactaagt cctaaaagcc tttttaccat aaaagcaact tgttctttag
     8221 ttgctttggc tttccctgta acggcttttt ttacttgtaa gggagtgtat tctgcaaaat
     8281 ctccatgaat ttgaagaatt tttaaagata gggctccgcg aaattgtgcg agttttaaaa
     8341 cggtttttgg attgtaagca aaaaagatat cttctatagc cacctcatca aaagaatgat
     8401 ttttaaaaat caagtccaaa ccctcgcaaa gctctgtgat ttgatactgt aaggtacttg
     8461 gctttatctt tataagtcct gcttctatga gaatgttttt tcctttgttg gcttctatga
     8521 tagcataacc gcaatttctt gaacctggat ctatacctaa aattttcaaa ttcatacctt
     8581 ttgaaaaata aaatacaaaa gcggatttta accttttttt ataaaattta agataaaatt
     8641 tatacattat gcaaaattta aagagagatt atgaatccaa gccaaatact tgaaaattta
     8701 aaaaaagaat taaacgaaaa cgaatacgaa aactatttat caaatttaaa attcaacgaa
     8761 aaacaaagca aagcagatct tttagttttt aacgctccaa atgaactcat ggctaaattc
     8821 atacaaacaa aatacggtaa aaaaatcgca catttttatg aagtgcaaag tggaaataaa
     8881 gccatcataa atatacaagc acaaagtgct aaacaaagta acaaaagcac aaaaatcgac
     8941 atagctcata taaaagcaca aagcacaatt ttaaatcctt cttttacttt tgaaagtttt
     9001 gttgtagggg attctaacaa atacgcttat ggagcatgta aagccgtagc gcataaagat
     9061 aagcttggaa aactttataa tcctatcttt gtttatggac ctacaggact tggaaaaaca
     9121 catttacttc aagcagttgg aaatgcaagt ttagaaatgg ggaaaaaagt catttacgct
     9181 acaagtgaaa attttataaa tgattttact tcaaatttaa aaaatggctc tttagataaa
     9241 tttcatgaaa agtatagaaa ctgcgatgtt ttgcttatag acgatgtaca gtttttagga
     9301 aaaaccgata aaattcaaga agaatttttc tttatattta atgaaatcaa aaacaacgat
     9361 ggacaaatca tcatgacttc agacaatcca cccaacatgc taaaaggtat aaccgaacgc
     9421 ttaaaaagtc gttttgcaca tgggatcata gctgatataa ctccacctca actagataca
     9481 aaaatagcca tcataagaaa aaaatgtgaa tttaacgata tcaatctttc taatgatatc
     9541 ataaactata tcgccacttc tttaggggat aatataagag aaatcgaagg tatcatcata
     9601 agtttaaatg cttatgcaac gatactagga caagaaatca cactcgaact tgcaaaaagt
     9661 gtgatgaaag atcatatcaa agaaaagaaa gaaaatatca ctatagatga tattttatct
     9721 ttagtatgta aagaatttaa catcaaacca agcgatgtga aatccaataa aaaaactcaa
     9781 aatatagtca cagcaagacg cattgtgatt tacctagcta gggcacttac ggctttgact
     9841 atgccacaac ttgcgaatta ttttgaaatg aaagatcata cagctatttc acataatgtt
     9901 aaaaaaatca cagaaatgat agaaaatgat ggttctttaa aagcaaaaat cgaagaactt
     9961 aaaaacaaaa ttcttgttaa aagtcaaagt taagtgaaag gatgtgaaaa ataaattcta
    10021 gagtgtgaaa aaaagaaatt aagcaaagta tgataaaata caaatttgat tattttgctt
    10081 tgaagaattt cacaatttca acaagcttat tgttacaacg aatttaaaat taaaataaac
    10141 caaggagaaa aaatgaagtt aagtatcaat aaaaatactt tagaatctgc agtgatttta
    10201 tgtaatgctt atgtagaaaa aaaagactca agcaccatta cttctcatct tttttttcat
    10261 gctgatgaag ataaacttct tattagagct agtgattatg aaataggtat caactataag
    10321 ataaaaaaaa tccgcgtaga atcaagtggc tttgctactg caaacgcaaa aagtattgca
    10381 gatgttatta aaagcttaaa caatgaagaa gttgttttag aaaccattga taatttttta
    10441 tttgtaagac aaaaaagtac aaaatacaaa cttcctatgt ttaatcatga agattttcca
    10501 aattttccaa atacagaagg aaaaaaccaa tttgacattg attcaagtga tttaagccgt
    10561 tctcttaaaa agatattacc aagtattgat acaaataacc caaaatactc cttaaatggt
    10621 gcatttttag atataaaaac agataaaatt aacttcgtag gaactgatac aaaacgcctt
    10681 gcaatctata ctttagaaaa agcaaataat caagaattta gttttagtat ccctaaaaaa
    10741 gctattatgg aaatgcaaaa acttttctat gaaaaaatag aaatttttta tgatcaaaat
    10801 atgcttattg ctaaaaatga aaactttgaa ttctttacaa aacttattaa cgataaattt
    10861 ccagattatg aaaaagttat accaaaaact ttcaaacaag aactcagctt ttcaactgaa
    10921 gattttatag atagtcttaa aaaaatcagc gttgtaactg aaaaaatgaa acttcatttt
    10981 aacaaagata aaatcatctt tgaaggtata agtttagaca atatggaagc aaaaacagag
    11041 cttgaaattc aaacaggagt aagtgaagaa tttaatctta ctataaaaat caaatattta
    11101 cttgatttct taacttctat agaagaagaa aaattcactt taagtgtaaa tgaacctaat
    11161 tcagcattta tagtcaaatc ccaaggacta tcaatgatta ttatgcctat gattttgtaa
    11221 taaaacaagt aaaagataaa ggaaaaatat gcaagaaaat tacggtgcga gtaatattaa
    11281 agtcctaaaa ggcctagaag ctgttagaaa acgcccaggt atgtatatag gagatacaaa
    11341 cataggcgga cttcatcata tgatttatga agttgtggat aattctatcg atgaagctat
    11401 ggcaggacat tgtgatacta tagatgtaga aatcactact gaaggaagct gtatagttag
    11461 tgataatggt cgtggtattc ctgttgatat gcacccaact gaaaatatgc caactttaac
    11521 tgttgtttta actgtcctac atgcaggggg aaaattcgat aaagatactt acaaagtttc
    11581 aggcggtttg cacggtgttg gggtttcagt tgtaaatgca ctctctaaaa aacttgtagc
    11641 tacagttgaa agaaatggag aaatttatcg tcaagaattt tcagaaggta aagttatcag
    11701 tgaatttggt gtgataggaa aaagtaaaaa aacaggaaca actatagaat tttggcctga
    11761 tgatcaaatt tttgaagtga ctgaatttga ttatgaaatt ttggctaaaa gatttcgtga
    11821 acttgcatac ttaaatccaa aaatcactat aaattttaaa gataaccgcg taggcaaaca
    11881 tgaaagtttt cactttgaag gtggaatttc tcagtttgtt atagacttaa ataaaaaaga
    11941 agctttaact aaagcaattt tctttagcgt agatgaagaa gatgtgaatg ttgaagtagc
    12001 tttgctttac aatgatactt atagtgaaaa tttactctct tttgtaaata atatcaaaac
    12061 tccagatggt ggaacacacg aagctggttt tagaatgggt ttaactcgtg tgataagtaa
    12121 ctatatagaa gcaaatgcaa gtgctagaga aaaggataat aaaatcacgg gtgatgatgt
    12181 gcgtgaaggt ttgatcgcta ttgtgagtgt aaaggtgcct gaaccacaat ttgaaggaca
    12241 aaccaaagga aaacttggtt caacttatgt gcgtcctata gtttcaaaag caagttttga
    12301 atatttgact aaatattttg aagaaaatcc tatcgaagct aaagctataa tgaacaaagc
    12361 cttaatggca gctagaggaa gagaagcagc gaaaaaagct agagaattaa cgcgtaaaaa
    12421 agaaagttta agcgtaggaa ctttaccagg gaaattagct gattgtcaaa gtaaagatcc
    12481 aagtgaaagt gaaatttatc ttgtggaagg ggattctgca ggaggttctg caaaacaagg
    12541 tagagaaaga tctttccaag ctatactgcc tttgcgtggt aaaattttaa atgttgaaaa
    12601 agcaagacta gataaaattt taaaatctga gcaaattcaa aatatgatta cagcttttgg
    12661 ctgtggtata ggtgaagatt ttgatctttc aaaacttaga tatcataaaa tcatcatcat
    12721 gacagatgcg gatgttgatg gatcacatat acaaaccttg cttttaactt tcttcttccg
    12781 ttttatgaat gaacttgtag caaatggaca tatttatcta gcacaaccac ctttatatct
    12841 ttataaaaaa gctaaaaagc aaatttattt aaaagatgaa aaagctttga gcgaatacct
    12901 gatagaaaca ggaatagaag gtttaaacta tgaaggtata ggaatgaatg atttaaaaga
    12961 ttatttaaaa atcgttgcag cttatcgtgc gattttaaaa gatcttgaaa agcgttttaa
    13021 tgtgatttct gtgatacgct atatgataga aaattcaaat ttagttaaag gaaataatga
    13081 agaattattt agtgtaatca aacaattttt agaaacacaa ggacacaata tcttaaatca
    13141 ttatatcaac gaaaatgaaa ttcgagcttt cgttcaaact caaaatggct tagaagaact
    13201 tgtgatcaat gaagaacttt tcactcatcc actatatgaa gaagcaaatt atatttttga
    13261 taagattaaa gatagaggct tggaatttga taaagatatt ttagaagttc ttgaagatgt
    13321 tgaaaccaat gctaaaaaag gtgctactat acaacgctat aaaggtttag gggaaatgaa
    13381 tcctgagcaa ctttgggaaa ctacaatgga tccaagcgta agaagacttt taaaaatcac
    13441 tattgaagat gcacaaagtg caaatgatac ctttaatctc tttatgggtg atgaggttga
    13501 accaagacgc gattatatcc aagcacacgc taaagatgta aagcatttgg atgtgtaaat
    13561 ttatcattga agaaatgatt tcttcaatga gttttgtttt gtaagaatat agctagagga
    13621 attcttcttc ttgtatcgta tttttctcca taatattttt caagataatt taaaattttt
    13681 tcttcatctt caggttctat ttcccaaagt ccttcactat cttgcatcca tcttatagct
    13741 gctaaccaag cttttttact tgcatgcata ttagtaatga gattggatcc atgacaagct
    13801 aaacaatttg cttccactaa aggtgaatca ggatcgataa tcaatcctgt atcagggtta
    13861 atttcaagat tttgagccca acttgcactt aaaaacaatg ctaagatcaa tataattttt
    13921 ttcatactta aactccataa acattaactc tatggcatgc attattgata tatcctcctg
    13981 gattccactg tgctaaaacc ataggttgac tgttaccttg actatcgata gctcttgccc
    14041 aaatttcata atatcctttt gttggtattg atatttgagc actccatttt tgccatgcta
    14101 atctatttaa tggtttttct acctttgctt tagtccatgt tacgccataa tcattgctta
    14161 tataaacttc actaacttca agttctccag cccaagcttt acctctaact tcaaattttt
    14221 tatttgcttt tatttcagaa ccatttttga tattagtaat tacagatctt ataggcattg
    14281 attctatgat tttcatctcg cctttatagt taaaatctcc tggttttacc ggatttacag
    14341 gaactttata agaaccttcc attttttcac catcatgaat tttatttctt actgaaattt
    14401 tataaagcca tttaccgctt gtacttgcag ggtaaccacc acaaacaagt ctaagtggat
    14461 agccattgac taaaggaata tctttgcctt cataagtcca agctattaga gtttcatctt
    14521 gtaaagcttt agaaatagga actcctctac taataggtga agtttcttca ccatttaatt
    14581 ttgtatctat accataatat ccgatataaa ccgcatcatt tttgatgcca caatctttta
    14641 aaatatcttt taaacgcact cctgtccatc taccgcaagc tactgcacca taaccccatt
    14701 gagttccttt tgtgctaggt ataacttcgg atctaccatt tccaccgcat tcaactgtta
    14761 aggcataagt ataggtttta aatttctttt ttaaatcttc tatggtgtaa gattttttat
    14821 tgataatgct ttctccatcg atttctaaag tccaaccttt gtgaagtctt tcttttatcg
    14881 tttctaggct tggtggtaag ccattatttc taacaaagaa attttcaggt ttggtaaaat
    14941 cagaatcaag agcataaatt tcagtttctg ctgttaatgg tttttcgcca tggtagataa
    15001 gatctttttt accttctatt ttaaaatcag gcaattcttt tgccaaagcc ttacttccta
    15061 aaaaattctc aaaagaaaaa tttgacaata cactaatgcc aaataaacca agtcctatat
    15121 tttttagaaa gtctctacga ttttcttttt gatcgttctg tttcattgaa atatccttaa
    15181 atatttatat aatcttttat tttattataa attttaaaaa tttaaataat taatataatt
    15241 aattatttaa attaaaaaaa t
//
LOCUS       DAQSLY010000029        15131 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.029, whole genome shotgun sequence.
ACCESSION   DAQSLY010000029 DAQSLY010000000
VERSION     DAQSLY010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15131
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.029"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..1282)
                     /locus_tag="R2H98_000715"
     CDS             complement(<1..1282)
                     /locus_tag="R2H98_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023611.1"
                     /translation="MRKSKFETKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREYCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMIMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGVFMGYLVDKFGLFKICIFFSLAFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKD"
     gene            1369..2166
                     /locus_tag="R2H98_000716"
     CDS             1369..2166
                     /locus_tag="R2H98_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEE9023612.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKNSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHVPFIKPKFLD"
     gene            2254..2472
                     /gene="infA"
                     /locus_tag="R2H98_000717"
     CDS             2254..2472
                     /gene="infA"
                     /locus_tag="R2H98_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEE9023613.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            2644..2757
                     /gene="rpmJ"
                     /locus_tag="R2H98_000718"
     CDS             2644..2757
                     /gene="rpmJ"
                     /locus_tag="R2H98_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEE9023614.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            2760..3125
                     /gene="rpsM"
                     /locus_tag="R2H98_000719"
     CDS             2760..3125
                     /gene="rpsM"
                     /locus_tag="R2H98_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEE9023615.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            3135..3527
                     /gene="rpsK"
                     /locus_tag="R2H98_000720"
     CDS             3135..3527
                     /gene="rpsK"
                     /locus_tag="R2H98_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEE9023616.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            3555..4181
                     /gene="rpsD"
                     /locus_tag="R2H98_000721"
     CDS             3555..4181
                     /gene="rpsD"
                     /locus_tag="R2H98_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEE9023617.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            4194..5207
                     /locus_tag="R2H98_000722"
     CDS             4194..5207
                     /locus_tag="R2H98_000722"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEE9023618.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            5211..5564
                     /gene="rplQ"
                     /locus_tag="R2H98_000723"
     CDS             5211..5564
                     /gene="rplQ"
                     /locus_tag="R2H98_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEE9023619.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            5737..6636
                     /gene="hisG"
                     /locus_tag="R2H98_000724"
     CDS             5737..6636
                     /gene="hisG"
                     /locus_tag="R2H98_000724"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEE9023620.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESHACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            6644..7930
                     /gene="hisD"
                     /locus_tag="R2H98_000725"
     CDS             6644..7930
                     /gene="hisD"
                     /locus_tag="R2H98_000725"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEE9023621.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASKRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            7927..8985
                     /gene="hisB"
                     /locus_tag="R2H98_000726"
     CDS             7927..8985
                     /gene="hisB"
                     /locus_tag="R2H98_000726"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEE9023622.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            8982..9569
                     /gene="hisH"
                     /locus_tag="R2H98_000727"
     CDS             8982..9569
                     /gene="hisH"
                     /locus_tag="R2H98_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEE9023623.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            9566..10297
                     /gene="hisA"
                     /locus_tag="R2H98_000728"
     CDS             9566..10297
                     /gene="hisA"
                     /locus_tag="R2H98_000728"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEE9023624.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVRALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNARLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLEN"
     gene            10282..11220
                     /locus_tag="R2H98_000729"
     CDS             10282..11220
                     /locus_tag="R2H98_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEE9023625.1"
                     /translation="MSGKLTYKELIIEVLKQTKKPLNVSEIWQKALEKGLDKKLSSIG
                     QTPTQTIWNRLLTDKINFLKTSIKPTTFWLKERENELLKLDNKNEITNEKQEKNKFHE
                     RDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKET
                     ITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVL
                     SELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDIN
                     KQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            11221..11988
                     /gene="hisF"
                     /locus_tag="R2H98_000730"
     CDS             11221..11988
                     /gene="hisF"
                     /locus_tag="R2H98_000730"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEE9023626.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            11990..12613
                     /locus_tag="R2H98_000731"
     CDS             11990..12613
                     /locus_tag="R2H98_000731"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEE9023627.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLDRLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAAIVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(12639..13799)
                     /locus_tag="R2H98_000732"
     CDS             complement(12639..13799)
                     /locus_tag="R2H98_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEE9023628.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(13825..14931)
                     /locus_tag="R2H98_000733"
     CDS             complement(13825..14931)
                     /locus_tag="R2H98_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEE9023629.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNIIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
BASE COUNT         5712 a         2281 c         2548 g         4590 t
ORIGIN      
        1 tatcttttac tataaaaaca gcacaaatag ccaataacgc taaaaaaatc atatatatac
       61 tcataccata taaaaatgga ttttcatttt tactcgcaag tgtattaagc caaaaaacga
      121 gttgcggagt aataccgcct gaaattgcat aagcaatatt ataagaaaaa gaaattcctg
      181 aaaatcttat tttagctcta aaaacttcac tcattaaaat aggtgcgaac acattaatcc
      241 cacctaaaaa acaaacaatc gaatacaaaa tacacaccaa aaccaaattt ttaagctcat
      301 ataaagcata aaaatataaa aaagaaaaaa atacaaaagc taaagaaaag aaaatgcaaa
      361 ttttgaataa accaaattta tctacaagat aacccataaa aaccccgcct aaagctattc
      421 ccaaaattcc taatatctgt aaataacttc cttcaacccc acttaaattt aaaatactag
      481 gcataaattt aggcattaat aaaacaagca caataacaca acctgttaaa acccaagtca
      541 ttatcattga tgaaaataaa ttttttacaa tatccttttc tttaaataaa tctttaagtg
      601 gaaaagaact aagcgatgat tcttttttca tttgtttaaa aacaggagtt tcttgcaaaa
      661 atctacgcaa ataaatagaa ataatcccaa aaattccacc tacaaaaaaa gcaatacgcc
      721 atgcataagc agcaatttct tctatgctaa aaaaagcatt aatgattaaa aatactatac
      781 ttcctaacaa aattcctaaa gccatagctg aatttaaaca gcttaaaaag aaagcttttt
      841 gtttttcttg acaatactct cttacaaaaa cccaagctcc aggcaattct ccacctatag
      901 ctatgccttg aaaaattctt ataagtatca ataaaacagg agctaaaaac ccaagagttt
      961 cataacctgg aataaaagct aagacaaagg taggaagaac cattagtaaa atacttagca
     1021 taaacatatt tttacgccca aatttatctc caaaatgtgc cataactata ccacctaaag
     1081 gacgtgctaa atatccagct gcaaatgctc cataagtatt taataaagcc caaaattcac
     1141 tcatatcttt aggaaaaaat acattagcta tatattcagc aaaaaagaca aaaataataa
     1201 aatcataaaa ttctaaagtt cctcctagtg aagaaagtcc taagatctta atttcctttg
     1261 tttcaaattt tgattttctc attgattaat taccttaaat tttaaaaaca ttgtttttat
     1321 tatactataa tcatttccaa aatattatct aaaaatttaa ggataaatat gtttaatttt
     1381 ataaccactc ttttaaaaac caatctttat tttttagaag aaaaaaccac aagcaaaaat
     1441 tcaaatcaaa cccatataat ctcacttaaa cagtctgatg atgaattttt aaatttatta
     1501 ttttcttttt tagtgccaca aagcgatgaa gataagaatt ttatagaaaa aactcgcaca
     1561 aaaatcaaaa gaaatgagca taatattgtt ctgataaaaa atccaaattt taatgcttta
     1621 atagacacag ggtttttaga tactattgac acattaaaag aaaaattaca tatccataaa
     1681 accgatttta aagatatcac tcatattatc ttaacacacg cacatcctga tcatataggt
     1741 gctttaatga gcgaagaaaa tctttttcca aaagctcaaa ttttaatcga taaaaaagaa
     1801 tatgattttt ggatcaaaag cgatagacaa gaaattaaaa acaccttgct taaacttaaa
     1861 aatatagaat ttatcgatca ttccaaagat ttgatctttc aaaattcagg tattaaagcc
     1921 atacctgctt acgggcatac cccaggtcaa aatgctatca taattgatga taaaatagtc
     1981 ttttggggag atttacttca tctttatgat atacaaatcc caaaacctaa aatcgctata
     2041 aaatttgata tagatcaaaa tgaggctata caaacaaggg aaaaactact taaagaattt
     2101 aaagaaagaa aactcaaagt tatagggact catgtgcctt ttatcaaacc taaattttta
     2161 gattaattac ttaaaaatta ctaaaaatta agtaaaaatt ttaataattt ttgctaaaat
     2221 tatagccttt ttatttcatg aaaggagaaa attttggcaa aagatgatgt aattgaaatt
     2281 gatggcaccg tacttgaagc attgcctaat gcaaatttca aggttgaact tgacaacaaa
     2341 catgtaattt tatgtcatat tgcaggaaaa atgcgtatgc attatataag aataatgcca
     2401 ggtgataaag taaaagtaga acttacacct tatagccttg ataaagggcg tataactttt
     2461 agatataaat aatctaagtt atttaaaagc taattttaga taaaattaga gtttttgcga
     2521 caaattacat cgaactatat gaagaagtat ttttaaaatc caccacttat tttgaaaata
     2581 gttggttatt cataaaacct gatgtagtcg taaatcaagt ggaattcatt caaggagacg
     2641 ctcatgaaag tgagaccatc ggttaaaaag atgtgcgaca agtgcaaagt agttcgccgt
     2701 aaaggcgtgg ttcgcattat ttgcgaaaat ccaaaacata aacaaagaca aggataaaca
     2761 tggctcgtat tgcaggtgtg gatttaccaa agaaaaaaag aattgagtat ggactaacct
     2821 atatttatgg tataggactt ttcacttcaa gaaaaattct agataaagta ggaatttctt
     2881 atgataaaag agttcatgag ttaagtgaag atgaagcagc agctatccgt aaagaaattc
     2941 aagaaaacta tatggttgaa ggggatttga gaaaacaagt tgctatggat attaaagcac
     3001 ttatggattt aggaagcttt agaggcttaa gacacagaaa aggcttacca gttcgcggac
     3061 aaaaaacaaa aacaaacgca agaactagaa aaggtaagag aaaaactgtt ggtgcaaaat
     3121 cataaggata aatcatggca aaaagaaaaa tcgtaaagaa aaaagtagtt aaaaaaaata
     3181 tagcaaaagg tattgtttat atcagtgcga cttttaacaa tactatggtt acagtgactg
     3241 atgaaatggg aaatgctatc gcttggagta gtgcaggtgg tttaggattt aaaggttcta
     3301 aaaaatcaac tccttatgca gcacaacaag cagtagaaga cgctttaaat aaagcaaaag
     3361 aacacggaat taaagaagta ggcattaaag tacaaggacc aggaagcggt agagaaactg
     3421 ctgttaagag tgtaggtgct atggaaggaa tcaaagtaac tttcttaaaa gatatcactc
     3481 cattagctca caatggttgc agaccgccta agcgtcgtcg tgtctaagat ataagaaaaa
     3541 tttaggagaa tattatggca agatatagag gaccagtaga aaaattagaa agacgctttg
     3601 gtgttagctt agcattaaaa ggagaaagaa gactagctgg caaaagtgca ctagacaaac
     3661 gcccttatgc gccaggacaa cacggagcaa gaaaaggtaa aattagtgag tatggacttc
     3721 aattaagaga aaaacaaaaa gctaaattta tgtatggagt aagcgaaaag caattccgtc
     3781 gtttatttgc tgaagcagca agaagagaag gaaatacagg ggtattactt atccagcttt
     3841 tagaacaaag attagacaat gtggtatata gaatgggttt tgctacaaca cgtcgttttg
     3901 caagacaact tgtaacacat ggacatattt tagtaaatgg taaaagagtg gatattccta
     3961 gctttagagt agaagcaggt gctaaaatcg aaatcatcga aaaaagcaaa aacaatcctc
     4021 aaataacaag agctatcgaa cttacagcac aaactggaat cgttgcttgg gttgatgttg
     4081 aaaaagataa gagatttgga attttcacaa gaaaacctga aagagaagaa gttgtcattc
     4141 cggttgagga aagatttatc gttgagcttt actctaagta ataggggcta aatatgagaa
     4201 atattacaac atctgcttat acgccaacag aatttacaat agaaaacatt agtgatactg
     4261 tggctaaaat cagtgcttgg ccttttgaga tcggctatgg aatcacccta gcccatcctt
     4321 tacgccgttt gctttacact agcaccatag gatatgctcc aactgcgatc catattgatg
     4381 gcgtagctca tgaatttgat agcatgcgtg gtatgcttga agatgtagca ctttttatca
     4441 ttaatctaaa aaaactacgc tttaaaatta aaggcgaatc aaataaagaa atagtagaat
     4501 ttagctttaa aggctcaaaa gaaatttacg gcaaagatct aaataatgat caagtagagg
     4561 tagtaaacaa agacgcctat ctagcaacta tcaacgaaga tgctgaactc aaattcacat
     4621 tgatcgttga aaaaggtatt ggctatgtac caagcgaaga aattaaagag cttataaatg
     4681 atcctaaatt tatagcttta gatgctttct ttacacctgt aagagaagca acctatgata
     4741 ttgaaaaagt tttgtttgaa gataatcctg attatgaaaa agtggtttta actgtaacaa
     4801 ctgatggaca aatcactcca aatgaagctt ttcaaaatgc tctagaagct atgtataaac
     4861 aattatcagt atttgataaa atcaccaatg ttagaagcgt aattaaaaat caagcaacaa
     4921 gcaatgaact agaaaatact aaattattgc aaaacattac agatttaaat ttaagtgcta
     4981 gaagttataa ttgtcttgaa aaagcaggag tagtttacat aggcgagctt gctttgatga
     5041 gtgtaagtga acttgcaggg cttaaaaatt taggtaaaaa atctcttgat gaaattaaaa
     5101 acatcatgga aagcataggt tttcctgtgg gaacttctaa gcttagcgat aataaagaaa
     5161 tacttaaaaa taaaatcgca gaattaaaag cacaaaacga aggataaaga atgagacata
     5221 aacatggata tagaaaactt ggcagaactt catctcatcg tgctgcctta ttaaaaaatt
     5281 taactatagc tttagtaaat agcggaaaaa tcgaaactac tctaccaaaa gctaaagaat
     5341 taagaggtta tgtagaaaga ttgattacta gagcaagact tggagatttt aacgctcata
     5401 gagcagtttt tgcttcatta caagataaaa acgctactaa taaattagtg actgaaattg
     5461 ctccaaaatt caaagatcgc aatggtggat atacaagaat catcaaaaca agaattcgcc
     5521 gtggtgatgc tgctgaaatg gctttcatcg aatttgtagc ttaatcaaat cctagctttt
     5581 gctaggatta atacttcaat taaatacctt aaaaataaaa agttttaaat aattatttta
     5641 aataaaatta aatttattta ttttctaaaa cccttgctaa aaattcaact acttatgcta
     5701 atataagttt ttaattttta atttcaagga tatgttatgc aagaaaacac tcgtttacgc
     5761 attgcgatac aaaaatcagg tagactttca aaagaatcca tagagcttct ttcagaatgt
     5821 ggtgttaaaa tgcatatcca tgaacaaagc ttgatcgctt tttctacaaa tttacccata
     5881 gatattttac gcgttagaga tgatgatatc cctgggctta tttttgatgg ggttgtagat
     5941 ttaggcatta taggggaaaa tgttttagaa gaaaatgaac ttgaacgcca gtctttagga
     6001 gaaaatccaa gctataagct tttaaaaaag ctagattttg gatattgccg tctttctctt
     6061 gccttacctc aagaaaataa atttcaaaat ttgaaagatt ttgaaggctt aaggatagct
     6121 acttcttatc cacaactttt aaagcgtttt atgaaagaaa atgggattaa ttataaaaat
     6181 tgtacgctta caggttctgt tgaagtagcc cctagggcaa atttagccga tgcgatttgc
     6241 gatcttgttt caagcggggc aactttacaa gcaaacaatc ttaaagaagt taaagtcatt
     6301 tatgaatctc atgcttgttt gattcaaaaa gaaaatgctt taagtaaaga aaaacaagcc
     6361 ttagtggata aaattatgtt gcgtgtagca ggagtaatgc aagcaagaga atctaaatac
     6421 attatgcttc atgctccaaa agaaaagctt gataaaattc aagccctact tccaggagtt
     6481 gaaagaccga ctatcttacc tttagcacac gatgaaaaaa atgtagcttt acatatggta
     6541 agtaaagaaa atcttttttg ggaaaccatg gaggctttaa aagaagaagg tgcgagttcg
     6601 attttagttc tgcctataga aaaaatgtta aagtgagtaa aaaatgcaaa ttttagtata
     6661 tgataatttg gatgaaaaac aaaaagaaga agcgttaaaa cgccctgcta taagtgcgaa
     6721 agatgaaatt tcaaaaatag taagttctat cattaaagaa gtgcaagaaa aaggcgatga
     6781 agctttgata gaacaagctt tgaaatttga taaggctgaa atttcaaaga ttaaaatcac
     6841 tcaagaagaa atcactcaag caagcaagcg tttagataaa gatttacaag aagctatttt
     6901 agtggcttat gaaaatatca aaaaatttca cgaagcccaa atcccacatg aaatcgctct
     6961 tgaaactaca aaaggcgtta aatgtgaagt tttaacacgc cctatagaaa aagtaggact
     7021 ttacatacca gggggtttgg cacctttgtt ttcaacggtt ttaatgctag ctattcctgc
     7081 aaaaattgca ggttgtgaaa aaatcgtttt agcaagtcct gcaaaaatca atgatgctgt
     7141 gcttttttgt gctaagcttt gtggcgtgga tgaaatttat caaatgggcg gtgcaggagc
     7201 tatagcagct ttggcttacg gtacccaaag tgttttaaag gtggataaaa tttttggccc
     7261 aggaaatgcc tttgtaaccg aagcaaaacg ccaagtaagt agtgatataa acggagcagc
     7321 tattgatatg caagcaggac ctagtgaagt tttagtcata gctgatgatt tagctaatga
     7381 aaaatttgta gctagtgatt tgctttcaca agctgaacat ggtgcagatt ctcaagtgat
     7441 tttagtgtgt ttaagtcaag attttgctaa aaaagcaagt gatgaagtcc aaagtcaatt
     7501 agaacttttg cctcgcaaag aacttgcaag caaaagcatt gctaattcac gcattatcat
     7561 agctaaagat ttaaatcaag ctttagaaat ttcaaatctt tacgcccctg aacatttgat
     7621 catacaaact caaaatccac gagaactttt aaaaggtgta aaacacgcag gatcagtatt
     7681 tttaggagct tattccccag agtctatggg tgattatgca agtgggacaa atcatgtttt
     7741 acctacttat ggacttacta aaacgcattc tagtttaggt ttggcagatt ttagtaaaag
     7801 aatgaccgtt caagagttaa gtaaagaagg ttttttagct ttaggtaaaa gtgttgaaat
     7861 tttagcacaa aatgagcatt tagacgcgca caaaaatgca gtaacttttc gtttagaaag
     7921 cttaaaatga gtcaaaaaat cctttttata gatagagatg gcactttaat agaggagcca
     7981 aaaagcgatt ttcaaatcga tactcttgaa aaattgcgtt ttgaaaaaga tgctattccc
     8041 actcttttaa aactaaaaaa atttggattt aaatttgtta tggtaagcaa tcaagacggt
     8101 cttggaacac caagttttcc aaaggaaaat tttgaaatcg ctcatgaaaa aatgcttgat
     8161 attttaaaaa gttgcggtat agaatttcaa gatattttta tttgtccgca ttttgaaaat
     8221 gaaaattgtg cttgcagaaa acctaaaacc gctatgttag aagagtatat caaacacgaa
     8281 ctttatgata aggagcaaag ttttgttata ggagatcgtg agagtgatat gatcttggct
     8341 tcaaatttag gcgtgcgtgg tttaaaatac ggcgaacttt cttggaaaga aatagaaaat
     8401 gaaattttaa gttcttttag aagcgcgagt tatcaaagaa ctactaaaga aacagatata
     8461 aaagtaaagg tatgcttaaa tgggggtaag gttagcatta aaacaggtat tgattttttt
     8521 gatcacatgt tagagcaaat cgctgtacat ggaggtatag ggcttgaaat ttcttgtaaa
     8581 ggagatttgg aaatcgatga gcatcatagc gttgaagatg tagccttagc acttggagct
     8641 tgtatcaaaa aagctttagg ggataaaatc ggcattgcaa gatatggttt tgctttacct
     8701 atggatgagt gtttggcaag ttgtgcgatg gatttttgca atcgtcccca tttagtctat
     8761 aaagccaaat ttaaaaaatc tcatttaggg gctttaagca cagaaatgat cgagcacttt
     8821 ttttattctt taagctatgc tatgggcgtg agtttgcatt taaaagttaa aggcaaaaac
     8881 gatcatcata aagccgaagg gctttttaaa gcctttgcaa aagctttgaa aatggcagta
     8941 aaaatagaaa gtgaaaattt agccagctct aaaggagtga tatgaaaatc atcatcatcg
     9001 atacagcctg tgcgaattta gcatctttga aattttgtct agatagatta ggttttaatg
     9061 caactatcag tagggattta aaagaacttg aaagtgcgga taagcttttt ttacctggag
     9121 tgggtaccgc aaaagaagca atgaaaaatt tagaacaatt taatcttatt gattttattc
     9181 aaaataccaa aaaacctttg cttggtattt gtttaggtat gcaaatttta ggaaattttt
     9241 ctgaagaatt aaatcaagaa accttaaaac tcatagattt tacaactcaa aaatttaaag
     9301 ctaaagaagg ctttactttt ccacatatgg gatggaatga agtttatagc tctcatgctt
     9361 tgtttaaagg cttagaaggg gcttattttt attttgtgca tagttattgt gtaggacttg
     9421 ggaaatacac tatagcagat tgtgagtatt cgcaaaaatt tagcgcaagc gtaatgaaag
     9481 ataattttta cggagtgcaa tttcaccctg aaagaagtag cgaggctggg gaaattttaa
     9541 tttcaaattt tattaaggat ataggatgac tcaaatcata cccgcactcg atcttataga
     9601 tggcgaagtg gtgcgtcttg taaaagggga ttacgaacaa aaaaaagtat ataaatacaa
     9661 tcccttaaag aaatttaaag aatacgaaaa agcaggagcg aaagaacttc atcttgtaga
     9721 tcttacaggt gcaaaagatc ctagcaaaag acaatttgct ttgatagaaa aattagccaa
     9781 agaagtcagt gtcaatttgc aagtaggtgg aggtatacgc tctaaagcag aagttagagc
     9841 tttgcttgat tgtggagtaa aaagagtagt tataggatct atggcaatta aagatgcgac
     9901 tttatgtctt gaaattttaa aagaatttgg tagtgaagct atagttttag ccttagatac
     9961 gattttaaaa gaagattatg ttgtggctgt aaatgcttgg caagaagcaa gcgataaaaa
    10021 gcttatggaa gttttagatt tttatagcaa taaaggctta aaacacatac tttgcacaga
    10081 tatttcaaaa gatggcacca tgcaaggagt aaatgcaaga ctttataaac ttatccatga
    10141 aatttttcct catatttgca ttcaggcaag tggtggagta gcaagcttaa aagaccttga
    10201 aaacttaaaa ggaatttgta gtggggttat cgtaggaaaa gctttattag acggagtttt
    10261 tagtgtagaa gaagggataa gatgtctgga aaattgacct ataaagaatt aattatagaa
    10321 gttttaaaac aaactaaaaa gcctttaaat gtgagtgaaa tttggcaaaa agctcttgaa
    10381 aaaggcttag ataaaaagct ttctagtata ggacaaacac ccactcaaac aatttggaat
    10441 aggttgctta cagataaaat taactttctt aaaacctcaa taaaacctac aactttttgg
    10501 ctaaaagaaa gagaaaatga acttttaaag cttgataata aaaatgaaat tactaacgaa
    10561 aaacaagaaa aaaataaatt tcatgaaaga gatttacacc ccttgcttgt aaaattttta
    10621 tatgaaaatt tagattttaa tttaaattgc aaaacaattt accatgaaca aagcaaaaag
    10681 ggtaaaggtg gggaagataa gtggaattat cctgatattg taggggttta ttttccttat
    10741 gatgattatg aaaaagaaac cataacactt ttagaaaata tcaaacaaaa cagctataaa
    10801 cttttttctt ttgaacttaa aattgcttta aatttttcaa atttaaaaga atgctatttt
    10861 caagctgtaa gtaattctag ctgggcaaat gaaggctact tggttgtttt acaagaaatt
    10921 gatagcgaag ttttaagcga gttaagacgc ttaaatcaaa gttttggcat aggagtgata
    10981 aaacttgaaa aagatatttc aaattctcaa attttaatta gtgcaaaaga aaaagaactt
    11041 gatattcaaa cactaaatat gctgatcaat aaaaatccaa attttaaaga atttattgat
    11101 gatataaaca aacaaattaa agtgggcaaa gaagcaaaaa ttcaagctaa ttttgatgaa
    11161 attaaaagcg atgaagaaat ggaaaaatat cttaaagaaa aatgtatttt ggagaaataa
    11221 atgcttacaa aacgcataat tgcatgttta gatgtcaaag atggcagagt agtaaaagga
    11281 acacaattta aaaaccataa agatatggga gatatcatag agcttgctag gtattattct
    11341 caaaatggta ttgatgagct tgttttttat gatattgctg caagtgctag aaaagaacgc
    11401 atatcaagag aatgggtaag tgaagtagca aaaaatatca atattccttt ttgtgttgca
    11461 gggggtatta aaagcgaaga agatgcagct gaacttttgg ctaatggggc agataaaatt
    11521 tctatcaatt ctcctgcttt aaatgatcca agcctaatca cacgccttgc taaaagcttt
    11581 ggcgtgcaat gcgtagtagt agggattgat agttttaaag atgaaaatgg aaatttaaaa
    11641 gtatttcaat acacagggga tgaaaaaaca agtaaacata gtggaaaaag cactttagaa
    11701 tgggttaaaa aagtgcaaga tctaggtgca ggcgaaattg ttttaaatat gatgaatcaa
    11761 gatggtgtta aaaatggcta tgatttagaa caattagaag ctgtatataa aatttgtaaa
    11821 gtacctttga tcgcaagtgg gggagcggga aaaatggaac attttttaga agcttttaaa
    11881 ctaggtatag atggggcttt agctgcttct gtttttcatc aaaaacttat agacattaaa
    11941 gaattaaaaa tttatcttaa aaatcaaggc ttaagtataa ggatataata tgcaaaattt
    12001 caaagaactt aatgaaaaaa tcgcttggca aaaagtggat aatcttttac ctgtcatcat
    12061 ccaagatgca aaaacttgcg aagttttaat gctaggcttt atgaataatg aagccttaga
    12121 aaaaagctta gaaagtggca aagtagtctt tttttcacgc acaaaacagc gtctttggat
    12181 gaagggtgaa gaaagtggaa atttcttaaa tatcatagat ttaagcttag attgtgataa
    12241 tgacacgctt ttaattttag caaatcctgt agggcctact tgtcatacgg gcgatatttc
    12301 ttgttttgaa aaaatttcta aaaatgcaga ttttgttttt ctagacagac ttgaaaaact
    12361 tattaatgca cgcaaaaatg ccgatgaaaa tacttcttat acagcaaaac ttttcaaaag
    12421 tggtacaaaa cgcatcgcac aaaaagttgg tgaagaaggc gtagaaacag ctttagcagc
    12481 gatagtaaaa gataaagaag agcttatttg tgaagcagcg gatttaatgt atcatttaag
    12541 tgttttactt gcagatgcaa atcttagttt ctcagatgtg atttcaaagt tgaaagaaag
    12601 acataaagct taaagcttta tgtaaaataa aatttatatc aatgcaaggc ttcattaagt
    12661 ttgactgctt ttttatttaa agctactatc atagcaccac ttatagaatc ttgacggaaa
    12721 tgtagtccat ttaaaccttt aagctctaag cctttgtaaa tttctttatc aaaattaaaa
    12781 taaggattaa gtttagcaag ttcttcggca tctttgagta aaaatttcgt tccctctagc
    12841 actgcaatac ctgcatcaac tatacaatta tcccctaaag gaattcctgt cactgaatta
    12901 gcccctaaaa gacaagcctt gcctacgctt atagcattgc cacttgttcc acttaaaaca
    12961 cctaaaatcg aagctccgcc acctacatca gaaccttctc ctactatagc acttgaacta
    13021 atacgccctt caaccataca agctcctgtt gtacctgcat taaaattcac ataacttgcc
    13081 cctggcatga tggttgttcc tgctgctaaa gacgcaccca ttcttacttt agaactttct
    13141 aaaattcttg tattatcctc agggataata tgtgctaaaa atcttgggaa tttatcaaca
    13201 aaatcgattt ttggatattg attgctcatt tttaaacgca tttcatttgc tcttaaatac
    13261 tcaagctcga taggcttatc atcactccaa gctacattgc ttaaaagtcc aaaagctcca
    13321 tttaaattga tacttcttaa aggtactttt ttagtagaaa gcaaataaag ttttagataa
    13381 atactttcta cacttaaagg ttctttatct tcaaaaagac aaacaaaaga aaattcatcg
    13441 tctttaaatt tatctttgat aatctttaat aaatcaatat tttgatgccc atcttcttct
    13501 aaaaaaggtt taaaacaaga aagtgcaaaa tcaatatctt ctaatttcaa agtttgcaca
    13561 aactcactcg cattaaaatc aatctccacg cccctttgca taaaagcttc aagcatgatt
    13621 gccgctgagc caaaattttg ctcatagtta atcaaagcaa aacttgcttg taagatttta
    13681 tttttattta actgtcctct atcaagcctt gctataccaa aagctttagg ttttttatag
    13741 ccactttttt gctcgatttg tttgattaaa agtaaaaaat cttctttagt attaatcatt
    13801 ttcttttcct tatccactta atttttaatg cgaacacgca ctttttccat tcatcacagg
    13861 ttgtatagca gaattatccg caccaccttc attgttaatc ttttctataa aactccaaat
    13921 tttttcagcc gccattaaat aacgccttga actcacactt tcagggtgat aaaaactcac
    13981 aggcttgcct tcatctccac cttctcttac tatcatttct ataggaattt gtgctaaaac
    14041 ttcactttta taggcttttg ccatatcttc agctgttcct ttaccaaaaa tatcatactc
    14101 tttaccatta tcaggacata aaaatccact catattttca atcacacccg ctataggaat
    14161 atgaagttta ttaaacatat ctaaagctct tttgctatcg tctaaagata cggtttgagg
    14221 cgtgcttaca caaactcctg cagtaatagg aatactttgc gcagaagtaa tttgtgcatc
    14281 gcctgttcct ggaggcatat ctaaaaacaa tacatcaagt tcaggccaaa tcacatcagc
    14341 taaaagttgc tcgattgctt tcataatcat agctccacgc cacataaggc cttgaccctc
    14401 ttcgatcaaa acccccatac tcatcatata aacaccatga gttaaaatag gctttaatct
    14461 ctgccctact acttcaggct gagttttggt ttcacctagc attcttggaa tatttggccc
    14521 ataaatatcc gcgtctaaaa tacctactct ttttcccatt ttagccatgg aaattgctaa
    14581 atttactgta gttgtagatt tacccacacc accttttcca cttgaaacca tgatgaaatt
    14641 ttttacttgt ggagcgatat tttttccact tcttgaatta cttttttctt caggaatttt
    14701 tggagtaatg atattaagtt caatattttt taaagccaaa ctcgataaag cttcaataat
    14761 atttttacga atttcattag ctacttcagg atttgctgaa acgatttcta tatcaatgaa
    14821 tacaccatca tcttgaattt taatatcttt tacaaagtta aaactcacta tatccttttc
    14881 aaaaccagga tattttacag tttttaattt ctctaaaatt tgttctttca tattttttcc
    14941 ttgtctttta aaaaaatcaa ttttactaat aaaatgataa aatttagctt tttataagtg
    15001 tataatatgg taacattata aaaaccaaca atattaaaaa gaggaatgaa aaaatgagtg
    15061 aaatgagcct cattatgtta gcagctggaa attctactcg ttttaataca aaggtaaaaa
    15121 aacaattttt a
//
LOCUS       DAQSLY010000030        15003 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.030, whole genome shotgun sequence.
ACCESSION   DAQSLY010000030 DAQSLY010000000
VERSION     DAQSLY010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15003
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.030"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            12..1520
                     /locus_tag="R2H98_000734"
     CDS             12..1520
                     /locus_tag="R2H98_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEE9023630.1"
                     /translation="MLIFVVFVVFLNLKILNLKLKPVNLRLFPLIALNLILIIIYVVA
                     LRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKAITPLKAQEL
                     KEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDF
                     LFKRFLSSSNGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSA
                     GNGSWQNIKNYLSILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKN
                     PHNTLVIALTISNHPPYKFPQNDLPKLENIPQTLLNMLPYDKNKQDNIIKAYTYANNE
                     FGKFLDKVKQSPFKDSVIIAATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNI
                     YYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARPNDEKLEFGINDAVWIDKKG
                     IYSGGKGYYFESNDTLKDMNKAFNLDGYTKDFDKFYRELNLYQLAERLGISK"
     gene            1584..2882
                     /locus_tag="R2H98_000735"
     CDS             1584..2882
                     /locus_tag="R2H98_000735"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEE9023631.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFEISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYAEFLDTAKIRVINAEDEFLKNYKNE
                     STKLYPNKDIKNCTMRIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIGLDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            2875..3225
                     /locus_tag="R2H98_000736"
     CDS             2875..3225
                     /locus_tag="R2H98_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023632.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            3215..5425
                     /locus_tag="R2H98_000737"
     CDS             3215..5425
                     /locus_tag="R2H98_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEE9023633.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSNGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGADFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTSKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGAGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            5434..9273
                     /locus_tag="R2H98_000738"
     CDS             5434..9273
                     /locus_tag="R2H98_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEE9023634.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLNKSSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYCNAFRQTSDYKRLKESKI
                     YKESKDKQDLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLVDMMDFEKVEFNKAISLNPKTQREEIKSQYPLVKLKICGDFFMGGTPSRKNINYWN
                     GDIKWLTISDYSNRQVIMDTKEKITREGFKNSNAKMIQKGAVVVSIYATIGRVGILGE
                     DMTTNQAIVAIIPNEEFINKYLMYAIDYFKFQLYNEVITTSQQNINLGILQNMVIPKP
                     PLEIQKQIVAECEKIEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKI
                     NNLCKINLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLE
                     VFGFVNKEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYI
                     SFILNEAGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIEL
                     DRLEKEKEKILQKYLFS"
     gene            9316..10017
                     /locus_tag="R2H98_000739"
     CDS             9316..10017
                     /locus_tag="R2H98_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEE9023635.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLEWYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            10010..10609
                     /locus_tag="R2H98_000740"
     CDS             10010..10609
                     /locus_tag="R2H98_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEE9023636.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLGNVIFMRSLAIFGFCFLTYMAYLMLKKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            10614..11711
                     /gene="dapE"
                     /locus_tag="R2H98_000741"
     CDS             10614..11711
                     /gene="dapE"
                     /locus_tag="R2H98_000741"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEE9023637.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            11721..11912
                     /gene="thiS"
                     /locus_tag="R2H98_000742"
     CDS             11721..11912
                     /gene="thiS"
                     /locus_tag="R2H98_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEE9023638.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            11909..12712
                     /gene="thiF"
                     /locus_tag="R2H98_000743"
     CDS             11909..12712
                     /gene="thiF"
                     /locus_tag="R2H98_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEE9023639.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            12715..13491
                     /locus_tag="R2H98_000744"
     CDS             12715..13491
                     /locus_tag="R2H98_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEE9023640.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSKELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAAKAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            13494..14639
                     /gene="thiH"
                     /locus_tag="R2H98_000745"
     CDS             13494..14639
                     /gene="thiH"
                     /locus_tag="R2H98_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEE9023641.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            14629..>15003
                     /locus_tag="R2H98_000746"
     CDS             14629..>15003
                     /locus_tag="R2H98_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEE9023642.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVG"
BASE COUNT         5480 a         1851 c         2819 g         4853 t
ORIGIN      
        1 ttttagcttt aatgttgatt tttgtagttt ttgtagtttt tttaaatttg aaaatattaa
       61 atttaaagct aaaacctgtt aatttaagat tatttccctt gatagcttta aatttaatat
      121 taattattat ttatgttgta gccttaaggg gtccatttaa gcatgtggct ataaatgtgc
      181 aaaattattc ttttagcgaa tatagtgttg taaatgatac aatgttaaat ccaattatgg
      241 cattttcttg ggctttaaaa caatataaag aagaagcagc tttgaaggct atcacacctt
      301 taaaagcaca agaacttaaa gaaaaacttt ttgattattt gcatcaaagt cctataaatc
      361 taaaagctga aaagaatcat cctagtgtat ttgttaactt aatggaaagt tttgggctta
      421 atttggctga ttttgcaaat acagaacata attttttggg ttcgttagat aaacatttta
      481 agcaagattt tttattcaaa cgttttttga gttctagtaa tggaactata ccaagttttg
      541 caaacttatt ttttgtaagt ccattttcta atatttctac aagcaaattt cagaaaactt
      601 atttggattt aacacctatt gctatttata agaaagcagg atataaggtg atttttgtaa
      661 gtgcaggtaa tggatcttgg caaaatatta aaaattatct cagtattttg ggggtagatg
      721 agattataga tgaaaatatt ttaatgaaag agtataatgg agcaaaagat agtgaaaatg
      781 gttatggggt agctgatgag tttttatata aaaaagttta tgacttactt caaaaaaatc
      841 cacacaacac ccttgtaatt gctcttacta tttctaatca tccaccttat aaatttccgc
      901 aaaatgattt gccaaaatta gaaaacattc cacaaacttt gcttaatatg cttccttatg
      961 ataaaaacaa acaagataat attatcaaag cttatactta tgcaaataat gaatttggaa
     1021 aatttctaga taaagtaaaa caaagtccat ttaaggatag tgtcattata gcagcaactg
     1081 gagatcatag agtacgcgaa atgagcatgg atttaaattc tcaaaaagct tttgcttata
     1141 gtgtgccttt ttatctttat attcctaagg atttgcaaga taatatttat tatgataaag
     1201 atcgtgtagg atctcataaa gatatttttc caactcttta tgctttaagt ttaaataatg
     1261 tcaagtattt aagcgtaggc ggaagaaata tgttagcaag accaaatgat gagaaattag
     1321 aatttgggat caatgatgct gtatggattg ataaaaaagg tatttatagt ggtggtaaag
     1381 ggtactattt tgaaagtaat gatactttaa aagatatgaa taaagctttt aaccttgatg
     1441 gttatactaa agactttgat aaattttata gagagttaaa tttatatcaa ttagctgagc
     1501 gtttaggcat ttcaaaatag gatttatatt ttctttttag taaaaaagtg ctaaaattta
     1561 gcctttaaag tataaaggtt taaatgatgc aaaatatcca ttttatcggc ataggcggta
     1621 taggaatttc cgctttagca agatttttaa aagaaaaagg ctttgagatt agtgggagcg
     1681 atcttaaaga gagtaaaatc actaaagaac tagaaaaaga aggggttaag gtcagcatcc
     1741 ctcatcataa agacaatatt ttaaacaaag atttagttat ttattctgct gctatcaaag
     1801 aagaaaatcc tgaatttaaa cacgctaaag aattaggcat taaatgcctt tcacgcaagg
     1861 aggccttacc tcttatctta gaagataagc gcgtttttgc agttgcagga gcacatggaa
     1921 aaagcacaac ttcaagtatt ttggcttctt tgcttgatga tgcttctgtg atcatcggag
     1981 cgattttaaa agaatttggt tcaaatatga tttataaaga aagccaaaac cttgtttttg
     2041 aagctgatga gagcgatagt tcttttttaa attcaaatcc ttatttggct atagttacta
     2101 atgcagaagc agagcattta gatcattatg gcaatgaagt ttcaaaactc catcatgctt
     2161 atgcggagtt tttagatacg gctaaaattc gcgtgattaa tgctgaagat gagtttttga
     2221 aaaattataa aaatgagtca accaagcttt atccgaacaa agatatcaaa aactgcacca
     2281 tgcgtataga aaatttcaaa ccttttacaa gctttgagtt gaaagattta ggtgaattta
     2341 aggtttttgg catgggatat catttagccc ttgatgcgtc tttggcgatt ttggcggctt
     2401 taaatttctt agatatagaa acgataagaa ctaggcttaa aaattatcaa ggtattaaaa
     2461 agcgttttga tattttacat gctgatgaaa atttggtttt aatcgatgat tatggtcatc
     2521 atcccaccga aataaaagcg actttaagtg cagcacaaga atacgcaaaa ttaggcggat
     2581 ataagaaaat cacagctatc tttgaacccc accgctacac gcgtttggct gcaaatttaa
     2641 aggaatttgc aaaggctttt gaaggtgtag acgagcttat aattttacct gtttatgctg
     2701 caggagaaga gcctataggg cttgatttaa aagcggtttt tcctaaggct ttatttgtag
     2761 aagatatcaa aagagagggt aaatttttgg tggcttctaa ggggcaagtt tttgaagaag
     2821 ggcttattat aggttttggt gcaggagata tcagtaataa attaaggcaa aaaaatgagt
     2881 aggttttttt tatatttttt aattatttta attttagcct taatcacttt tgctttgcgt
     2941 gaaaaattag gcaaaaaaac taaacctttt tttggtattt tgcttgtgat ttttattgtt
     3001 ttagcagtat tttttgaatt tgaaaacaca caaaaaagtc atttaagaac agatattatc
     3061 gtagctttta atcaaaataa aaatatttta tgtaaagata tcaatgtttc taaggcgtat
     3121 tttaattatg aatttggtac aggaagtttt atttcaaagg ataataatca aagttttaat
     3181 tctttaatca tagatattaa agattgtagg ttaaatgatg aatgatacaa aagaagaatt
     3241 gatctcaaag cttgatttaa acagctattt agaagagttt aaagcccttt ttgcaagaga
     3301 taaggagatt tttttgcaag gagattctaa tcttcatttt aaacgtatac atgagctttg
     3361 cgaggtggaa tttcctacta taccagagct tagcaatctt gataaagcct tggttcattt
     3421 aagtaagcaa ggaattttgc atttagatga aatttttgaa tttgtaaaaa tttttcgtta
     3481 ttttgaaaag ttaaaaaaaa taaaactagg aacaaattta gactcttggc tacaaaagat
     3541 agaatttgtt agcggggctt tggagctttg tttgaatttc gatgaaaaag gggagttaaa
     3601 agaaagttta gatgaaagac ttgtaaatct taatgccgct ctaagattaa aaaatgaaag
     3661 cataatagct gagtttaaga aattttgcta tacaaaagct ttaatgcctt atcttatcga
     3721 tacacaaatc catcttataa acaatcttga agccttgctt gtaagaggcg ggtttaatca
     3781 cgctattaaa gcaaaaatca taggcagaag taatggcggt ggcttttata tcgtgccttt
     3841 aagtgttgaa aatttgcaaa atgatataga aaaaatcaaa aatcaaaaag aagaaattta
     3901 ttatgaatac gctaaaaatt tctcagcttt tttagcaaaa aacctacctt ttttaaaatt
     3961 tatcaataca gcctttgatc tttttgatca ttatagtgct agggttttgc ttgctaaaaa
     4021 aagggatttt gaatttgttt tgtgtgatca aagtacggat ttagtgctta aaaatttcgc
     4081 tcatcctgcc ttaaaaaatc caaaaagcgt gagtttggaa tttaaaaaac aagttttaat
     4141 catcacaggg gtaaatgcag gcggaaaatc catgctttta aaatccatgc taagcgcagc
     4201 atttttagct aaacatcttt tgcctatgca tataaaagca agtgaaagta aaatcggtac
     4261 ttttaaagaa tttgatgcca tcatagaaga tccgcaaaat gttaaaaacg acatttcaac
     4321 ttttgcagga agaatgttgc atttttctag acttttttct aggaaaaatt tgcttttagg
     4381 tatcgatgaa atagagcttg gagcagattt tgaagaagcg gcttgtttgt atagtgtgtt
     4441 aatttcaaaa ctcatagcta ataatcttaa aatcatcatt actacacacc acaaacgcct
     4501 tgccatgctt ttagcaaaga atgagcaagt tgaactcatc gctgccttat atgatgaaga
     4561 gctttcacgc ccaaaatacg agtttttaaa aggcaccata ggaaaatctt atgcctttga
     4621 aaccgctttg cgttatcaga ttccgccgaa tttagttagc gaggctaaaa agctttatgg
     4681 cgaggataaa gaaaatttag aagagcttgt gggtaaaaat atcaatcttg aattagaact
     4741 aaaagctaag cttgaaaatg tcgagaaaaa agagcaaaaa gtcgatgaaa ttttactttc
     4801 cttaaaagag caaaaagaaa aaaatgaaca agaatttcgt acgagtttga gaaatttaga
     4861 atttaaattt cacaaagcca tagaagaagc taaaaaaacc atacagctta aagatataaa
     4921 agacaagcaa agaagtctta ataaagccaa tgaacttaaa aaagaaatca tcttgccaag
     4981 tatggagcaa aacgaagaat tgcgtgtggg ggattttgta aaatatgaaa aaattaaggg
     5041 taaaatcata agcatttcta aaaacgatgc tatggttgaa agtgatggga tcaaacttcg
     5101 tgtgccttta aaactgctta aaaaaagcac tcctacatct aaaataagtc caaaaacaag
     5161 cattagtgtg gcaaaaccga ctaatcttag tgttagcttg gatttgcacg ggcttaggag
     5221 tgatgaagct atttcaaggc ttgataaatt tatttcagat gctttgcttg caggctttga
     5281 tgaagtttta gtttaccatg gtataggagc aggaaagctt gcctttgctg taagagagtt
     5341 tttgaaaact cataaaagtg tcaagggctt taatgacgca ccgatcaatc aaggtggctt
     5401 tggtgctaag gtggtaagat tataaggaaa taaatgatta caaaagataa tttaaaacaa
     5461 gttttagaaa acttaggctt taaaaataaa aatgaaaatt atgtaaaaac aatcaataat
     5521 tacactcttt taatagatta taaaaaccaa agtattaatt atccaaaaga aataaaaatt
     5581 cacgataaaa ctacttctaa tttttcacac cctgaaaatt ttgtagtttt tgaatgtgtg
     5641 catagacttt tagaaaaagg ttataaggct gaacatttag agttagagcc aaaatggaat
     5701 cttggcaggg ataaaaaagg tggtaaggct gatattttag taaaggataa tgaaaacaat
     5761 ccttatttga ttatagaatg caaaaccaca gattctaaaa atagtgaatt tataaaagaa
     5821 tggaatagaa tgcaagaaga tggcggacag cttttttctt attttcagca agaaaaaggt
     5881 gtaaaatatc tttgtcttta tacaagtgat tttagcgata agttagaata taaaaattac
     5941 atcatacaag cttacgataa cgaagaatat ctaaaagaaa aggaattgca aaattcttat
     6001 aaaaaatcta ataacaatat agaacttttt aaaacttgga aagaaagtta tgaactgcaa
     6061 tattttaaac aaggtatttt tgaagcaaat gtcaatgctt ataaaatttt agaaattact
     6121 ccaacttttg ataatcttaa ggaacttaaa gaagaaggta aatatcacga atttgcaaaa
     6181 attttacgca agcataatat atcaggcaag gaaaatgcct ttgataaact tgtaaatatt
     6241 tttctttgta aaatctatga tgaaactttt aataaaaaca atctcaaatt tggatatttt
     6301 ggtgtaatgg cagatactta tgcaaatatg caagatagat taatgtggct ttataaagaa
     6361 gctatgaaag aattcttagg agagaaaatt acctttgtat ctaatgaaga tatagaaaaa
     6421 gactttaagc aattaaagat aaaaacttta aaagaagtaa tgcaaaatta catcaaagaa
     6481 ttaaaatttt attcaaataa tgattttgca tttttagaag tgcataataa agaattattc
     6541 ttaaaaaatg cacttgtatt aaaagaaata gtagagcttt ttgcaaatta caagcttact
     6601 caaaactcta caaatcaatt tttaggcaat ctttttgaac tttttttaca aaaaggtatg
     6661 aagcaagatg aagggcagtt ttttactcct attcaaattt gtgaatttat tatgtattct
     6721 ttaccgcttc aagaaatgtt aaacaaaagc tctaaagctt taagggtgat tgattatgct
     6781 tgtggtgctg gacatttttt aaacacctat gccaatgagc ttaagcgtta tctaacagaa
     6841 gatgagctta aagagcatta taaaaatatt tatggtattg aaaaagagta tcgcttaagt
     6901 aaggtttcta aggtatcaag tgcaatgtat gggcaaaatg aaatcaatat tttatatgct
     6961 gatgcacttg cttcttttga attagcaaat acaaataatt tagaaggaga aaaagcaaaa
     7021 ccacaaatag aatcaaatag ttttgatttg cttatagcaa atccgcctta ttctgtaaaa
     7081 ggatttttag aaactttaag tgataaatct aaaaatactt ataaactttt caacgatgat
     7141 ataaacatag aaacaaataa ttctatcgaa tgcttttttt gcgagcgagc aaatcaaatt
     7201 ttaaatgata atgctaaagc tgctattatc ttaccaagtt ctattttaaa taaagattct
     7261 atttataaaa atacaagaga aatattattt caaaattttg attttattgc cattgtagag
     7321 ctaggtaatc aaacatttgg agcaacaggg acaaatacga ttattttatt tttacgcaaa
     7381 aaagaaactt ttaaacaaga aaatcatctt atttctcaag attatagttt gattaaagaa
     7441 cgcatagaag ctgaaaattt aaaagacagt gaaaactttt atcaaaatta tctaagtgcg
     7501 tattgtgatt ttagaaaatt tgataaagag ctttatagca attttttaaa tggaaactta
     7561 gattctaagc ttgcagagct agaagccttt aaagattatt gcaatgcatt taggcaaaca
     7621 agcgattata aaagacttaa agaatctaaa atttataaag aaagtaaaga taagcaagat
     7681 ttagaagata aagccttttt agcttatgct caggcaatag aaaaggataa attgctttat
     7741 tttagtctaa gtcttaatca agaagtttta atcataaaat ccccaagtga tataaaagaa
     7801 caaaagaaat ttttaggtta tgagtggagt aatagaaaag gtgatgaagg tttaaaagaa
     7861 ttgcacgagc cttatttgag cccacttttt gaaagaggta atccacaaaa tgagactaag
     7921 cttaatactt taatctacaa atctttttta aatacgcttg atgttatccc gcaagaattg
     7981 cagatttatg ctacaaaagc aaggcttgtt gatatgatgg attttgaaaa agtggaattt
     8041 aataaagcta taagtttaaa tccaaaaact caaagagaag aaataaagtc tcaataccca
     8101 ttggttaaat tgaaaatttg tggagatttt ttcatgggag gaacaccatc aagaaaaaat
     8161 ataaattatt ggaatgggga tattaagtgg ctaacaatta gcgattactc taatcgtcaa
     8221 gttattatgg atactaaaga aaaaattaca agagagggtt ttaagaattc taatgcaaaa
     8281 atgatacaaa aaggtgctgt tgttgtttca atttatgcaa ctattggtag agttggaata
     8341 ttaggcgaag atatgacaac aaatcaagct atagtagcta ttattccaaa tgaagaattt
     8401 ataaataaat atcttatgta tgctattgat tattttaaat ttcaattata taacgaagtt
     8461 attacaactt cgcaacaaaa tataaattta ggaatcttgc aaaatatggt tattccaaaa
     8521 ccaccgcttg aaattcaaaa acaaatcgta gcagagtgtg aaaagataga agagcagtat
     8581 aatactttaa gtttgagtat aaaagagtat caaaacctaa tcaaagcaat gcttcaaaaa
     8641 tgtggtatta tagaggacaa tcaagaatat gaactaaatt ctattttaga taaaattaat
     8701 aatttgtgta aaataaattt ggatagtgaa tttttatcat catttaataa aacaattaaa
     8761 gaatatgctt tatcaaatcc aatttttaaa ctaagtattg gaaaaagagt tttaaataat
     8821 gagctgcttg aaaatggaca aattcctgtt tatagtgcaa atgtgttgga agtatttgga
     8881 tttgttaata aagaaatttt gcaagattat gataatgatt ctgttttgtg gggtatagat
     8941 ggagattgga tggtgggatt tataccaaaa aataaaaagt tttatccaac tgatcattgt
     9001 ggggtattaa gggttgatga tacaaaaata aatgctaaat acataagttt tattttaaat
     9061 gaagctggta aaaaacaagg attttcaaga aaacttagag cttcaataga tagaataaaa
     9121 gcattaagag ttaaacttcc ttctttagaa tttcaagatc aaatagcaga tataactgac
     9181 aagattgaga aaaaaatcaa tgaatataaa atagaacttg atagattaga aaaagaaaaa
     9241 gaaaaaatct tgcaaaaata tttattttct taaagcattt ttcgctaaac tttgtaaatt
     9301 ttataaggtt tagcgatgaa aaacattatg atattaagcg gagcgggttt gtctgctcca
     9361 agtgggctta aaacttttag agataatgat ggactttggg aagaatacga tgtgatggag
     9421 gtttgctctg caacaggttt tagaaaaaat cctaaaaaag tacttgattt ttacgatgca
     9481 agaagggcac aacttcaaaa tgtaaagcca aatcatgctc atgaaaaaat cgcacagtta
     9541 aaagaaaaat ggggtaaaaa cctttttgtc atcacgcaaa atgtagatga tttgctagag
     9601 cgtgcagggt gtaaagatgt agtacatttg catggctttt tgcctgaact tcgctgctta
     9661 aaatgcgaag gaatttttaa tataggttat gaaaaaatca cagataaaca atgcccaaaa
     9721 tgcaaaagca aggatttaag acacaatata gtcatgtttg aagagcaagc ccctgcttat
     9781 gctacgcttt attctttgct aaatcaaact tcgcttttta tcagcgtagg cacaagtggg
     9841 gcggttttgc ctgtagggcg ttatgcttca atgtgcgaaa aaagtatttt aaatatctac
     9901 gaaaaagatg cgaatttaga gtggtatttt gataaaatct atatagaaga tattataagc
     9961 gctattgata aaatcgcact tgatatagaa aattttatga aagatggtaa tgtttgattc
    10021 ttttttaagt ggagtttttt tgggttttgg agtgagtgtg ccttttgggc ctgtaaatat
    10081 tttgatttta acttatgcgc taaaagcttt taaaaattcc atagctgtag gacttggagc
    10141 atttagcata gatatgcttt atcttttttt gcttcaattt gggcttttaa attttttagg
    10201 taatgttatt tttatgcgtt ctttggcgat ttttggtttt tgttttttaa cttatatggc
    10261 gtatttgatg ctaaaaaaaa agaaagaaag cttaaattta gagcataaag aatttaaaga
    10321 aagtcttttg aaaagttata ttaagggagc ttttttaaat ggttcaaatc cttttgtgat
    10381 aggattttgg cttagcgctg caagtgtggt tttaagtagt gatcatgctt atttgatgac
    10441 tttagggctt gttgtggcta tacttttttg ggtaagtgct ttagcctttg tggtggcaag
    10501 atatagtcat gtttttagtg caaaagttgt ttttataatc aatataattt cagctataat
    10561 tatagagtat tttgctctta atttattata taaaactttt ataggataaa aaaatgaatg
    10621 caaaagaatt tttaatcgaa cttttaaaat ttaaatctgt tacgccaaat gatgatggag
    10681 ctttaaattt catcgctatg gaactgagtg attttgaagc tttttttata gaaaaagaag
    10741 gcattaaaaa ccttttactc actaaaaaat ttaaagatga aggcgagcat ttagcttttg
    10801 gtgggcatgt agatgtggtg cctgcaggcg agggttggag taataatgct tttgcgcctg
    10861 tggaaaaaga aggctttatc tatgcaaggg gtgctcaaga tatgaaaagc ggagtagcag
    10921 cctttgtaga tgcggtaaag aatgcggatt ttaaaggagc tagacttagc cttattttaa
    10981 caagtgatga agaaggcgaa gctatatatg gaactaaggc tgttttagaa tggatgcaag
    11041 aaagagatat gctacctgat tatgctgtgg ttgccgagcc aacctgcgtt aaaaaaatcg
    11101 gcgatagtat taaaataggg cgtcgtggtt ctatcaatgg aaaactttta atccgtggaa
    11161 aacaagggca tgcggcttac cccgaaaaat gtatcaatcc tgtgcatgat tttgcgccag
    11221 ttttaaagct tttagcgggt tttgatcttg atcctggaag tgctgaattt agtccttcaa
    11281 aaatcgttat aactgatatt cgcggaggta tgggggtgtg taatgttacg ccaaatgatt
    11341 taaaacttat gtttaatgtt cgcaattccc ctgatacaag cttagaagat gtaaaaagtt
    11401 atgtagaaaa aatttgtcat ggtttaaact atgagttaga gctaaaacaa tcaagcgaag
    11461 cttttttgac aaatatcgat aataaaatcg ttcaaaaaat gaatgaaagc gttcaaaaaa
    11521 tcacccatga agtgccagag cttaatacca aaggcggcac aagtgatgca aggtattttg
    11581 caaaatacgg tgtaaaggta gtggaatttg gggtttgtaa tgatagaatt cacgctattg
    11641 atgaaagagt aagtatagaa gaatttgaaa aactttgcct tgtttttaaa gacttgatag
    11701 aaaattttta aaggtttaga atgattatca atggacaaaa gcttgagtta aaagagctta
    11761 aatttatgga ttttatcaaa gaaaaaggct tgaaaataga acttatcgcc ttggaattaa
    11821 atggagagat tatacctaag agtgaatttg aaaatttgat tttaaaagaa aatgataaag
    11881 ctgaaatcgt aagttttgta ggaggtggat gatgagagta aaattcaatg gcaaagaact
    11941 tgatacagac tttaaaacaa gtttggaatt ttttgaaaat atcagcaaaa atgaaaatga
    12001 tgtatggatt atcaatggtt ttgcaacaaa agagaatatc gctttaaatg aaaatgatga
    12061 gcttttttgt atagaaaaaa atactttacc tccaaaagac gcactagatg ctatgatgag
    12121 agcaagacat acaccaaagc ttcacgataa acttaaaaat gggcgcgtgg cggtgtgtgg
    12181 tttaggcgga cttggatcac atatagcgat aaatttggca agaagtggag tggggtattt
    12241 aaagttgatt gattttgatg tgattgagcc tagtaattta aatcgtcagg cttatcgtgt
    12301 aagtgatttg ggcaagttta aaaccgaagc tttaaaagag caaattagcg aaattaatcc
    12361 ttatatcagc gttgaaattt gtaccttaaa aatcgatgag gataatttaa aatctttgtt
    12421 taaagatata gatatagttt gtgaagcctt tgatagtgct atcgcaaaag cgatgatagc
    12481 gcaaaatttt catagatttt acaaagatag tgttttaatc tgtgcttcag ggcttgcggg
    12541 ctatggtgat agcaacagca tacaaacaag aaaaattgct aaaaatttct atgtatgtgg
    12601 ggatttggta aatggtgcta aggtgggaaa tggacttatg gcaccaaggg taaatatttg
    12661 tgcaggacat caaagtaatc ttgttttaga gcttttagcg aataaggagt aaaaatgcaa
    12721 gaaaatttaa aaaatgataa attaaaaata ggcaaatacg agtttgattc aagatttatt
    12781 ttaggttctg gaaaatattc actagagctt ataaaatcag ccatagaaga agctaaagcg
    12841 cagattatca ctctagcttt acgccgtgca aatacagggg aaatcgctaa tatacttgat
    12901 tatatcccta aaaatatcac acttttaccc aacacttcag gcgcaagaaa cgccgaagaa
    12961 gccttacgca ttgcaaggct ttcaaaagag cttggttgtg gagaacttat caagatagaa
    13021 gtgataagtg atagtaggta tttgctgcct gataattatg aaacgattaa agcttgcgag
    13081 cttttagcta aagagggttt tacacctcta ccttacatgc atgctgatct ttacgcagct
    13141 aaagctatgc gtgatgcagg agctgcggct atcatgcctt tagcagcacc tattgggagt
    13201 aataaaggct tatgtgctaa ggaatttata caaattttgc ttaatgaaat tgatttgcct
    13261 atcattgtag atgcgggtat tggaagtcct tcacaagctt gtgaagctat gcaaatggga
    13321 gtaagtgcgg tgatggtaaa tacagccata gctgaagcta aagatatagc cttgatggct
    13381 aaagcttttt ctttggcagt aaatgcggga agagcggctt ttttagcagg tttggcaagt
    13441 gtgagtaaag ctaaagcaag ttctccatta acaggctttt taagggattg attatgcaag
    13501 attatatgca gtatttacct cacatgcagg aaataaaaag cgaaatttta aataaggttt
    13561 taagtcaagt tcaaagctat gatgagagtc aatttagcgc taaagatgtt aaaaatgctt
    13621 taaatcaaac acatttaagc atagagcatt taaaagcctt gctttcaagt gcagcagaag
    13681 atttcataga agaattagcc tttaaatccg ctaaagtcaa gcaaaaatat tttggaaatt
    13741 ctatctctct ttttacccca ctttatttgt caaattattg taattctaaa tgtgtttatt
    13801 gtggttttca aaaaggtaat aaaatcgcaa gagctaagct aaatgaagct gaaattcacg
    13861 aagaaatgca agccattgct aaaagtggtt tagaagaaat tttaatgcta acaggcgagg
    13921 gcagggagtt tgcaagtgta gaatatatag caaatgcttg taaaatagct agagagtatt
    13981 ttaaggttgt gggcgttgaa atttatccta tgaatgaaga tgaatataaa attttgcatg
    14041 aaaagggttg tgattatgtg actgtttttc aagaaactta caatcctcta aaatattcta
    14101 aaattcattt agctggtgaa aaacgcattt ttccttatcg ctttaatgct caagaaagag
    14161 ctttaaaagc gggtatgcgt ggagtggctt ttgcggcact tttgggtata gatgatttta
    14221 gaaaagacgc tcttgctacg gcgcttcatg cacatttttt acaacaagct tattcgcatg
    14281 ctgaaatttc tatttcagtg ccgcgtttaa gacctattat caataatgcc aaaatccatc
    14341 ctaaagatgt aagtgaaaaa cgccttttgc aagtactttg tgcttatagg ctctttttgc
    14401 cttttgcggg cattaccatt tcaagtcgtg aaagaatagg ttttagagat gaggttatca
    14461 agcttggtgc tactaaaatg agtgcaggag tgagtgtggg tataggtgag cataagggtg
    14521 agaaaaaggg tgatgagcag tttgaaattt cagatgatag aagcgtagat gaaattttag
    14581 ctatgcttaa aagatccaat ttacaagctg tgatgagcga tagtatctat gtgggataaa
    14641 aaaatcatcg ccataagcga tagaaaatgt gtagaaatag actttttaaa gcagattgaa
    14701 aaacttgcta aggctaaggt agatgctata gttttaagag aaaaagattt aagcgaattt
    14761 gagtattatg acttagcaaa agaagtttta agcatttgcg caaagcaaaa agtgacttgt
    14821 tttttgcatt tttttgatag ggagtgttta aaattgggac atcgttattt tcacgcaccg
    14881 ctttctttgc taagaaaaga acctaaatta acaaaatatt ttcatatact tggtacttca
    14941 gtccatagca aagaagagct tttagaggcg atgagctata aggtaaatta tgcttttgta
    15001 ggg
//
LOCUS       DAQSLY010000031        14948 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.031, whole genome shotgun sequence.
ACCESSION   DAQSLY010000031 DAQSLY010000000
VERSION     DAQSLY010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14948
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.031"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..829)
                     /locus_tag="R2H98_000747"
     CDS             complement(<1..829)
                     /locus_tag="R2H98_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEE9023643.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDVFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     "
     gene            complement(834..1358)
                     /locus_tag="R2H98_000748"
     CDS             complement(834..1358)
                     /locus_tag="R2H98_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEE9023644.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(1355..2137)
                     /gene="napH"
                     /locus_tag="R2H98_000749"
     CDS             complement(1355..2137)
                     /gene="napH"
                     /locus_tag="R2H98_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEE9023645.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLVALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(2134..2874)
                     /gene="napG"
                     /locus_tag="R2H98_000750"
     CDS             complement(2134..2874)
                     /gene="napG"
                     /locus_tag="R2H98_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEE9023646.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(2892..5666)
                     /gene="napA"
                     /locus_tag="R2H98_000751"
     CDS             complement(2892..5666)
                     /gene="napA"
                     /locus_tag="R2H98_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEE9023647.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEALDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(5913..6440)
                     /gene="tpx"
                     /locus_tag="R2H98_000752"
     CDS             complement(5913..6440)
                     /gene="tpx"
                     /locus_tag="R2H98_000752"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEE9023648.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(6539..7225)
                     /gene="peb2"
                     /locus_tag="R2H98_000753"
     CDS             complement(6539..7225)
                     /gene="peb2"
                     /locus_tag="R2H98_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEE9023649.1"
                     /translation="MLVYGPGGPAPVLKELALKFEEKTKEKVIVTAGPTPAWIDKAKE
                     NADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVRPNNPKNIKNFEDILKDG
                     INVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKNSKAAVDEWNNNPNIDAL
                     IIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENKKALEFVDFIKSKEAQKV
                     WKKYTWKEVK"
     gene            complement(7321..9351)
                     /locus_tag="R2H98_000754"
     CDS             complement(7321..9351)
                     /locus_tag="R2H98_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEE9023650.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            9479..10501
                     /locus_tag="R2H98_000755"
     CDS             9479..10501
                     /locus_tag="R2H98_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023651.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNTSIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKGKLKQENKQAKIEALKKEISKQQKILERE
                     RAVKKELQSNKSNKNKYLNTAREYLNIGKNSRLEPELSTENMKVYVLDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            10524..13136
                     /locus_tag="R2H98_000756"
     CDS             10524..13136
                     /locus_tag="R2H98_000756"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEE9023652.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            13141..14151
                     /locus_tag="R2H98_000757"
     CDS             13141..14151
                     /locus_tag="R2H98_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEE9023653.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGVIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            14148..>14948
                     /locus_tag="R2H98_000758"
     CDS             14148..>14948
                     /locus_tag="R2H98_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023654.1"
                     /translation="MNEENISIISAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLIL"
BASE COUNT         5296 a         2624 c         2072 g         4956 t
ORIGIN      
        1 tcatcaaatt ttcattatta aaagttttaa caggcttaaa atcacttgtg ctaaaaactt
       61 cactaactcc agcttcatta tcgctataaa cagcgaattc tccactagga cttaaagcac
      121 aagtatatat caaaaaatct ttttgcaaaa aattttgctc ttcatttttt acaactccta
      181 tacgcctatc cgttccacaa cttaaaataa cattattttt aaaatctact tgatagatat
      241 tatctttatg cattttatca tagtttttta acatcttcca atttttcaaa tcaaaaagtt
      301 ctacttcgcc actctcaaaa cctgcaacta gtctactctt atcttcattt aaaactgcat
      361 cattaagact agaatgggaa aaattaaatt tttttatatt ttttaaactt ttatcaatca
      421 attctatttc agaaccaata gaaatcaaaa gataagtgtt ttcattgata aaaaatgctt
      481 ttattatgct attttcttcg agctttttga tttgtaaatt ttccttataa aaacttaaat
      541 ttttagcacc aaaatcaccc tcgctaagta ttaaaagtgt atgtttaaaa acatcaatgt
      601 tataaatctt agcaaaatca tcaccataat aatttttaat ctttggtaaa gataaaagtt
      661 cttttaaact tttatcttta atgttatatt gtaaaatttc acctttatca gtgcctatat
      721 ataagttttg cttatcaagc tttaaagctg ttatattagc atttaatttc agctcataag
      781 cataagacaa aacacaaaaa agactcaaaa taaaaagaaa ttttttcatt tatttacttt
      841 acaccctcat taatcacatc aattaaattt gaacgacttt ttaattgttc atttttaaat
      901 tcaggtttaa agctatttcc cactaaaggt tttgcatcac tttgtggaac atgacactga
      961 gtgcaattaa aacgactatc gctaatcata tctcctgtgg ttttattgtg tctaaaatca
     1021 taataatgac tagcaggaag tggagttgca ccagcatctg ctgctatagc cttatcatgg
     1081 cagcttaagc acatattgtt atctttagtt ataggtaaca aatcttcaat agcatgcgga
     1141 attaatggtg gtgcattttc ataagaacgc tcaaaacgag tagattcccc aggttgtaaa
     1201 gttgtgaaat ttgcttccac taaatttact ttattttcat tttctaaact tgcttttcta
     1261 agtccaattt gttccgaact taccccacta ttcattgcac aagcggcaaa aaataccact
     1321 gcagcacttc ctaataaaac caatttcttc ttcattattt attccttaaa tcaaaaatat
     1381 taaaattcaa agcatcatca ttacaaactt ctatacatct tgcacacctt atacactctc
     1441 ctgatttcac gctagtactt tcttttccaa ccatccacaa aacctgtttt tcaggacaaa
     1501 tacggataca ttcataacat ttagtgcatt tatcactatc atgctttatt ttaagcaaag
     1561 caaaacgaga aataaaagca taaaaagctc ctagtggaca aaaatgtgaa caaattgccc
     1621 taggacttaa aaaagtatca atacaaaaaa gtataaaggc tacaaaaatc caagaacttg
     1681 tagcaaaaat aatccctcta tgtatcattc ctatataaga aaaactttca aacacaggca
     1741 atgaaaatac aaaagaaagg actaaaacca agaccaatac aaaatagcgt aaatttttag
     1801 gcaaaattaa aaatttatta ttaagggtta atttatttcg cacaaaagca gcaaaatctg
     1861 tgattaaatt aacaggacaa acccaagagc aaaaaaccct tcctaaaagc aaaccataga
     1921 taaaaaatat aatcaaagct cctattaaag ccactaaatc tatactccag cttgctagaa
     1981 tgatttgcaa aaccgcaaaa ggatcgctta aaggtatggt attaaaaagt ctagaagaac
     2041 ttaaatttcc ctgcaagata aaatctgtag ctttaaaact aaaaagcgct aaaattccaa
     2101 gctgaacgat gcgtctagca attaaatact tcatcacagt tctccatcat ttaaataatt
     2161 ggttgctttt ttagcatcaa aatgttttga agtatctgca ttttttatac gaccttcatc
     2221 tttttcatcc cagcctttta cataatgaga tcctgctttt cccaatacat actcccttgg
     2281 caaaacacga atggccggtt tttcagtaat acaagccagt tcacaaagcc cacaacctac
     2341 acacacttca tgatccacac taggtagtaa aaaagcatgt ttggcggtgc gttcattgcg
     2401 tttaagctca agttttaaag ccctatctat caaaggacaa gctctataac aagcatcaca
     2461 ttgaattccc cagtgtgcca cacaagaagc actatcaaca atagcaatac ccattttcaa
     2521 agattctata ccctgctcta aatgcttttt atctaaagca tcagttggac attctctaat
     2581 gcaaggaata tccttacaaa gatagcaagg aatttctctt gccttaaaaa aaggcgtgcc
     2641 attttttgga ctatctaaca agctagcaag ctttaaagta tcataaggac aggcttttac
     2701 acaaagccca caacgaatac atttgcttaa aaatctagct tcatcttcag ccccaggagg
     2761 acgcaaagca taattatcat cggcttttaa agccaaatta gccaaaaatc cacctcctgt
     2821 acataaacat gcagccttaa aggcactaac gaaaaattct cttctacctt tcatttaatc
     2881 aaaaccctaa attaagcctt ataaattttt acagcacatt ttttaaagtc agtttgtttt
     2941 gaaagcggac aagtcgcatc caaagtaact ttattgatat atacattctc atcaaaccac
     3001 ggcacataca caagtcctac aggcggtttg tttcttccac gcatatctac tcttgctttt
     3061 actttaccac gacgagattc cacccaaacc aaatcacctt gatttaagcc taatttctct
     3121 ccatctttct cactcatata gcaaagtgct tcaggcacag cacggtaaag ctcaggcaca
     3181 cgcatagtca tagttccact atgccaatgc tctaaaaccc ttcctgttgc aagccagaac
     3241 ggatactctt tacttggtct ttcaggtgct ttcataaatg gcctaaagaa aattttagcc
     3301 ttatttttaa tactgtgctc tttttcatct ttaggagcta ttaaatcccc atttgtaagc
     3361 attttgttaa aatcaccata aaaagcaaaa tctgaatttg gagccgcttt tttagcataa
     3421 taatcaaatt tagtattaaa tctccactgt gtttccttgc cattaaccac aggccatctt
     3481 aaacccctta ctttatgata ggtatcaaaa tccgctaaat catgtccgtg tcctaagcca
     3541 aatttacgat attcttccca aagatatttt tgaacgaaaa agccatagcc tgtaaattct
     3601 tttccatcac tgccttgaat ttttctctca tcacctttaa catcggtatt atcaaagcct
     3661 tttgcgatgg catcgtttgg attaaagctt tttgcttctt tattggcaaa tagtacatca
     3721 aaaagtgtat catcttcgct ataacccata gcttttgcct cttctaaaac acttggcaag
     3781 gtaagcttat tatccacttt ttgctctttc caaacttctt taagcttaaa gcgttttgca
     3841 aattctaaaa tttgccaagt atcactcatg gcagcaccta caggtaagac ttgttgtttc
     3901 caatgttgag ttcttctttc agcattacca taagcacccc atttttcata aatcatagcg
     3961 cttggtaaaa taagatcagc tacttttgct gaaattccag gataacaatc acttacaaca
     4021 ataaaattat ccatttctct tgctgctgca atccagtgat ttgcatttgc agtgttttgc
     4081 catggattat tcacttgcac ccatgcaaat ttaatttttc catcttctaa atctctcatg
     4141 atattaagat aaggagaacc tggttttggg ttgatagtct ttgcaggaac tttccaaatt
     4201 ttttcagaaa tttctctgtg ttttggattg gctacaacca tatctgcagg caaacgatgt
     4261 gagaaagttc ctacttccct agctgttcca caggcacttg gctgtcctgt taaagaaaag
     4321 gctccactac ctggtttagc ttgctttcct agcaaaaaat gtaccatata agcttgttca
     4381 tttacccaag aacctcttgt gtgttgatta aagcccatag tccaaaaact tacgactttg
     4441 cgatttttct ctatgtaaag attagctaat tcttgaagtt ttttcttaaa atcttccaaa
     4501 gactcattat catcaccttt ggctactctt gcagtgtatt ctaaagtata aggggctaaa
     4561 ccttttttaa attcgtcaaa agaaatttcc cagtttttat cagccacacc ttgatgtttc
     4621 atttcaaatt tatcacccgc tttaacgcca agataagata aagaagtagc ctcttcatcg
     4681 tctaaagtga ttacattttc tttttcaacc gtatcttttt cactttcttt aaattttgga
     4741 tgatttggat tatttctcat accataacca atatcagcat aaccagttgc aaatacgcag
     4801 tgatctttga taaatttcat atccagagcc tctggatgat tataaacaat ctctcttgct
     4861 atgtagttcc aaatagccaa atctgtattt ggtttaaaaa taatttcaat atcagcaata
     4921 tttgaagtac ggttagaaaa agtgcttaga ttcacaactt taaccttatc aagattgctt
     4981 agttttctat cacttactct tgaccaaagg attgggtgca tttcagccat attagctccc
     5041 caagtgataa tagtatctgt aagctctata tcatcataac agcctgatgg ctcatctaca
     5101 ccaaaagttt gcataaaacc aaccactgca gaggccatac aatgtcttgc atttggatcg
     5161 atattatttg ttctaaaacc cgcttttgca agctttaaag cagcataacc ttcttggata
     5221 gtgtattgcc cactaccaaa aatccctata cctgtaacgc cgagttcatt gtaggctttt
     5281 ttaaattgtt tttccatttc atcaaaggct ctttgccaag aaacttgttg aaatttgcct
     5341 tttttatcaa attcgccttt ttcattcatg cgaagcaaag gcataacaag acgatcttca
     5401 ccatacatga tcttagcatt aaaataacct ttgatacaat taagtccgcg atttacgggt
     5461 gctgcaggat caccttttgt tgctacgatt ttgccatctt ttctagctat cataattcca
     5521 cagccagttc cacaaaatct acaaacagct ttatcccatt tccaatcttc ttcttgcgcg
     5581 ccaagcatag agcttggaac actaagccct gcaacactag cagcacttgc aatagcggta
     5641 tttttaataa aatcccttct attcatcctt attcctccaa aataaaaaaa tcatcttatt
     5701 ataaaaaatg aagtataaaa atctcttgaa attttaataa aaataataat tttaaagctc
     5761 tattttatag gagttttatt gtccttttta tattattatt acacaaaata aatattaaaa
     5821 ataatcaact taacaattaa aatataatca acttaaaata ataaaaaaat gaagatataa
     5881 aaattaagcc ctaagaatgg gcttaatcaa aattaatggc aaccacaacc accgcagcag
     5941 ctagagccac caaaaaatgc atcaagtttt gcaatatctg gcatttctgt gatttcattt
     6001 acaagttctt tatatgccac tttaccctct ttaatcacaa atacggcacg agctaaaagc
     6061 ccttctaaag caccttcatt tatcaaaaca ccatattttt caccaaattc ttttgccaca
     6121 aaatcacttg caacacttaa attttcaata ccttctgtac tgcaaaatct tcccatagca
     6181 aaaggtaagt ccatacttac tacaatcact tcagcaccat tgtaactggc tactttttta
     6241 ttaaattctc tagcctctgt agcacaaact ggtgtatcta agcttggaac acttaaaatg
     6301 atttgagttt tacccgctgc accgatttca atcacgctta aatctttagc tttaagattt
     6361 accttaggag catctgctcc aacttctact gaatttcctt taagttttac aggatttcct
     6421 ttaaaattta ctgtactcat ttaatttcct tttttgatat tttaaacatt attgcaatta
     6481 atgttttagg agtgattata tcctataaat attaattatt ttttaatttc actcaaaatt
     6541 attttacttc tttccaagta tattttttcc acactttttg agcttcctta ctcttaataa
     6601 aatctacaaa ttctaaagct tttttatttt ctaaaccttt ttttgtagga gcaatttcag
     6661 ctgcacgata aatcactgca tttttatctt tgataaataa agctttatca tcgcctaaag
     6721 cctttgccca atgagaccaa atgattaaag catcaatatt tggattgtta ttccactcat
     6781 ctacagcagc tttggaattt ttagcataaa tttttatatt tttacgtaat tttaccaaat
     6841 tttctctttt tgcacttttt aaagccatat cttcataaag tccaacttgt cctgcaccat
     6901 caaccaccat aacatttatg ccatctttta aaatgtcttc aaaattttta atattttttg
     6961 gattatttgg acgcacgata atacctgatg gacgcacatt taaaacgctt aaattttcca
     7021 aacttaaact tggaattttt ttagcaaaat catccatcat tgaagtattg cctgaaaaaa
     7081 tcaaatctgc attttctttt gctttgtcta tccaagctgg agttggacct gcggttacaa
     7141 tcaccttttc ttttgttttt tcttcaaatt ttaaagcaag ctcttttagc acaggagcgg
     7201 gaccacctgg accataaact aaaatttcag catttaaaaa acttgctgct gctaaactta
     7261 aaaattaata tttttttcat aaaataaacc tttctttata ataatataaa ggaaatttta
     7321 tcaatctata gttaactctc ccttgcaaag ccctgcttct ataagaaaac gagaaggagc
     7381 gaaagaagtt tttttatttt tatcatattt agcatagctt aaataaagta tattttttgc
     7441 cctagttact gcaacataaa aaagccttct ttcttcttct aaacttccac ccattcccat
     7501 aagcttttga ttaggaaagc gaccttgcgc aagatcaatc acaaaaacaa gatcaaattc
     7561 caagcccttg cttgcatgta cgctaagcaa attaactcct ttgccactac tcatttcact
     7621 tgcacctaaa gttagaaaat tataatactt ataaatatcg ctataatttt ttgtaagctc
     7681 ttttaagaca ttgaattttg tttctatttt ttctaaattt tcactctttc ttaataaatc
     7741 cacctgtcct gctttatttg ttgctctttt ggttgcaagt tcttcacaaa tttctctata
     7801 aaaagaattt tcacaaatta aatttaccaa agtcaaagaa tgttttattt ccatagcttt
     7861 ttttaaaaaa agataaattt tttctaaatt tctagcacat aaatcattga tttttgaaag
     7921 ttttaaaata ggatgtgcat caaattcact ctcaaattta aaacgagttt cgctggctaa
     7981 ttcttctaaa tccgcaaaaa gcccaagttg ataatttctt ttttgatgat tttgcaaatt
     8041 tacattttta tcaggatcta aaaaaccttt tattaaattt ccatgcccta attttaaaag
     8101 tgcgtcaaaa atttcttttg ctaaaactcc acccacacct ttggtgtatt gaaccaaatg
     8161 aataaaagcc ataatatcct taggatttac cacaagagca agcatagagc taaaagcttt
     8221 aacttctaaa ctttcaaaaa aacttccact tccctttctc acacttgcaa tgccctgctc
     8281 ccttaaagct acttcaaccc catcagcact tgagttgttg cgaaaaatca cggcaatttc
     8341 ttccaaactt actccgcttg taagtatcat tttggctata ttttgatact gatcaaataa
     8401 ttcttcaaaa gtaagcaaag atggggcttt aaactcatca tttcttgtaa caataagttc
     8461 ttttggatat aatctttcgt tatttaaaat cactttatta gccaaagcta aaatacttct
     8521 tgatgaacgg tagtttttat ttaaagaaaa aatttttgca tctttaaaac gatctttaaa
     8581 cccacctatg atattaatat ccgctccatt gaaagcataa atactttgat cataatcccc
     8641 tacgcaaaac aaacttttac tatgaaaagc ctctattaag gaactttgca aagtatttgt
     8701 gtcttgatat tcatctacta aaatttcatc aaattcatat ttttcttctt ttaaaagatc
     8761 ttttagattg ataagcaagt cattaaaatc tacataatta aaacgctttt tttcattatc
     8821 atattctttt aaaatatctt cataaatttc agcataaata ctttgatctt cgtagttttg
     8881 gcaaaaccaa gtataaaaat cttgattgtg cgctttgttt tgaaacaaag aataaagatc
     8941 atataaataa cttgattgat aaggttttat atcacttaaa tgcctaaaag ttcttttttc
     9001 atagacactt ttaagtagag tttttaactc gcttgcttgc tttaaggcta tatttttatc
     9061 cgcatttcta agtaaggtat aagccgtact atgaaaagtt cctgcaagta ttttactggt
     9121 aatattttta tcaaaaaatt tccctaaacg ccctatcatt tctttgctgg ctttatttgt
     9181 gaaagttaaa agcatgattt tttgaggtgc cactcccttg cttaaaagat aagaaattct
     9241 tgcaacaata gtagaagttt ttcccgtccc tgcacttgca ataacaagat tgtgtccaaa
     9301 atcagcagta gcagcaagat attgttcatt atttaatttt gaaagtggca ttattttcct
     9361 tataaaagtt aaaattataa aaaaaaatta cttaaaaata taaaaattta aaattacttt
     9421 atattagatt atagtacaat gctaaattat ttaactttct gtttttaagg gatagcaaat
     9481 gaatttgaaa attttttcta ttattgttgg catattaatt gctgttattg tgatattagg
     9541 tggaacatat tattatcttt ttgaatattc aaaaccaaag aattacacct taaataccaa
     9601 cacttacacc gaacaaaaat cgtataccaa taactacgat aattcctatt caccctcgat
     9661 ccaaaccaac aatagttcat caaatgtaaa tactaataac aataccatcc aaaagcaaga
     9721 aacaaaccca ttattagacg aaaatcaaag cttaaataac gatacattta atacatcaat
     9781 aagcgaaaac aatcaaagct taaataatga caccaataca agtaataata ttaatacaaa
     9841 tgaaaataag caaattttag atacggataa aggaaaatta aaacaagaaa ataaacaagc
     9901 caaaatagaa gctcttaaaa aagaaatcag taaacaacaa aagatcttag aaagagaaag
     9961 agctgtaaaa aaagaacttc aatcaaacaa atcaaacaaa aataaatatc taaataccgc
    10021 tagagagtat ctaaacatag gaaaaaacag tcgtttagaa cctgagctta gcacagaaaa
    10081 tatgaaagtt tatgttttag atggaaaatt tttaagccaa tacagaatca atctgttaaa
    10141 agatatgcta agcattatac aagataatgc aaaagattat tatctaagta tttttgttaa
    10201 aatgctacca aaaggggaaa tgaaattaac tatctataac aaagaaatta tcttttcaga
    10261 tatgaaaaaa gcttataaat atattagttt agatagatta agcccatatt taaacaatcc
    10321 aaaagaatta aatgaacatg tagcacgtga agaaatttta gaaagactta aacttcaaat
    10381 taaaaaagat ggcaaaggaa gtgatttttc taaacatatc aaaagtttga aaactggact
    10441 taatacagca caatatttct tcccgttttg tgaaattata gaaattagct ctattaaata
    10501 agctaaaaca ataaaggcaa ataatgtatg ataaaaattt agaaaaagag tattatcaaa
    10561 tttgcgaaga acgcggatat tttgaaatcg atggcaataa aaccatacaa gaaaaagata
    10621 aaaatttctg cattatgatg cctcctccta atgtcactgg agttttacac ataggacatg
    10681 ctttaacttt tactctacaa gatattatga cgcgttataa aagaatggat ggctataagg
    10741 ttctttatca accagggctt gatcacgcag gtattgccac tcaaaatgtt gtagaaaaac
    10801 aactccttgc tcaaggcatt aaaaaagaag aactaggtag agaggaattt atagaaaaag
    10861 tctgggagtg gaaagagcaa agcggtggaa aaattttaga ccaaatgaga acactaggca
    10921 tcactcctgc atggagtcgc ttgcgtttta ctatggatga aggtttggtt aatgccgtaa
    10981 aaaaagcctt tgtagaactt tatgataaaa gacttattgt acgtggaaac tacatgataa
    11041 attggtgtac tcatgatggc gctttaagtg atatagaagt tgaatacaaa gaaaacaaag
    11101 gaaaacttta tcatattaaa tactttttaa aagatagcga tgaattttta gtagtagcca
    11161 caacgcgtcc tgaaactttt tttggcgata ctgcagttat ggtgcatcct gatgatgaac
    11221 gctatgctaa atttgtggac aaagaagtga ttttgcctat aagcaaaaaa gccattaaaa
    11281 tcatagccga tgaacatgta gaaaaagaat ttggaacagg agttgtaaaa gttactcccg
    11341 ctcatgacat gaacgattat gaagtaggac ttagacataa tttagatttt ataagtgttt
    11401 ttgatgaaaa aggaatttta aacgaacatt gtttagagtt tcaaggttta gaacgcttag
    11461 aagcaagaga aaaaatcgta gccaaacttg aaagtcttgg ttttatagaa aaaatagaag
    11521 agtataacaa tcaaatagga tattgttatc gttgcaacaa tatagttgaa ccttatatct
    11581 ccaaacaatg gtttgtaaaa aaagaaatcg cccaagaaag tatagaaaaa gttgcgcttg
    11641 gagaaagtaa attttaccca aatcactgga taaatagctt taatgcttgg atgaaagatt
    11701 taagagattg gtgtatttca agacaacttt ggtgggggca tcaaattcct gtgtattatt
    11761 gcgaatgctc tcatgaatgg gcaagccaac atacgcctaa aacttgtcca aaatgtcaaa
    11821 gtcaaaattt caaacaagat gaagatgtgc ttgatacttg gttttcttca ggactttggg
    11881 ctatgagtac tctaggctgg ggaaatgaaa attggggtaa agataaaatt tggtctgaaa
    11941 aggatttaaa agatttttat cccaattctt tactcattac aggttttgat attttatttt
    12001 tctgggtggc tagaatgatg tttcaaagca ctaatgcctt acatcaactt ccttttaaag
    12061 atatttattt acatgctctt gtgaaagatg agcaaggtag aaaaatgagt aaaagccttg
    12121 gaaatgttat cgacccaaat gaaagcatta aagaatatag tgctgatatt ttacgcttta
    12181 ctttagcact tcttgctata caaggacgcg atattaaact tagcaatgat aaacttttac
    12241 aagttagaaa ttttacaaat aaaatttata acgctacaaa ttatctgctt ttaaatgaaa
    12301 gtaaatttga agatttggaa aatatcacac ttcattcaga attagcaaaa tatatttatg
    12361 ccaaatttca aacttgtgtt aaggatgtaa gagaaaattt agacaattat cgctttaatg
    12421 atgcggctaa tactctatat aaattctttt gggatgattt ttgcgattgg ggtatagagc
    12481 ttagcaaagc cgaaaaatca agcgttaaag aacttggtag tattttcaaa gaagctttaa
    12541 aacttttaaa tcctttcatg ccttttatca gcgagtattt ataccacaaa ctaagcgata
    12601 cagaacttaa aacaagccct tctattatga taagcaaata tccaaaattt aaagaacaag
    12661 ataaaaatat agaaaaaatc ttttctttgc tcatagaaag catagttagt atccgccgtg
    12721 ctaaaagttt aatcgatctt ggaaattcta aaatagaaaa agcttatatc aaatttaacg
    12781 ataaaaaaat caaagatgaa atcaaagctt atatgaattt tatcataatg ctcgcaaagt
    12841 gcgagcaaat agaatttagt gaagaaaaat taccaaaggc aatatgtgat gttagcgaga
    12901 atttagaaat ttttattacg cttgaaaatg ttgatttaag tggtatttta acaagacttg
    12961 aaaatcaaaa aaataagctt gaaaaagaaa gtttcaagct taactccatg ctttcaaatg
    13021 aaaaattcat cgctaacgca cctaaagagg tggtggagca aaataaagaa gctctagaaa
    13081 atttaaaaat tcaacttgaa aaaatatcag ttgaacttca aaatctaaga ggttaaaaat
    13141 ttgataaaaa taaaaaattt aaaaaaatat tatggcaagg aactcgtgat aaacgatgtt
    13201 tctttggaga ttaaaaaggg tgaaatttac gccatagtag gtcatagtgg agctggaaaa
    13261 tccactcttt taagatgtat taatggactt gagaattatc aagaaggaag tttaaaagtc
    13321 tttgatcaag aaattaaaga tttaagtcaa aaaaaatcaa aagagttaag aatgcttaga
    13381 aaagatatag ggatgatttt tcaaaatttt gccctaatgg agcgcaaaaa tgtatttgaa
    13441 aatgttgcta tgcctttaag aacacactat actcagtgta aatttcatgc caagcttttt
    13501 aataaagaat acatgagcga aaaagaaatt gcccaaaaag tcaattcctt acttgaaatc
    13561 gtagggcttg atcataaaaa caaatcctac ccaagagaac tgagcggagg gcaaaaacaa
    13621 cgcgttgcta ttgctagagc cttagcttta aacccaaaaa ttttacttag tgacgaagct
    13681 acttcggctc ttgatccaaa cactacaaaa aatattttag agcttatatc taaaatcaat
    13741 gctgaatttg ggattactgt tgttttagta actcacgaaa tggatgtggt aaaagacata
    13801 gctcaaaaag ctttattact tgaacatgga caaatcatag gaagtggagt aattgatgag
    13861 ctttttttaa ggcctaatgc caaaatgaaa gaatttttag gagaaagcga cttcttgcct
    13921 gagcacggac ttaatatcaa actttacttt ccaaaagaag ttgcccaaaa tagcgtcatt
    13981 actcatatgg caagaactct aaatatagac tttaacatag tttggggtaa aatagaaaaa
    14041 ctgaatggaa aagccttggg aaatttagtt ataaatataa atgaaaagga taaagacaag
    14101 gttcttgatt acatagaaaa aagtggagta ttatgggagg tggcatcatg aatgaagaaa
    14161 acatctctat catcagtgct ttttttagta gaatttctca attttttaat gaattttctt
    14221 ggcaggatat taaagaagtg agtttaagtt ctatcacgag tttcaatgaa aattatgaaa
    14281 acattttaaa acctgcgctt aatgaaacaa tttatatgag tttaatggct gtactatttg
    14341 gatttttatt ggctatcatt cctggaattt tacttgctat ttgggataaa aatggaatta
    14401 aagaaaataa aatcgcttat agtattttag attttattac caatatatta cgcgcctttc
    14461 catttttaat tcttatagtt gttcttttac cactttctaa aatcatagta ggcacaagca
    14521 taggtacaaa tgctgccata gttccattag ctatcggaat agctccttac ttggcaaaga
    14581 tgcttgaaag cgcttttaaa gaaatagaca aaggaatcat agaagctgca aaaagttatg
    14641 gtgctagcaa tattcaaatt attttcaagg ttatctttag tgaagctctt cctgctataa
    14701 ttagcggaat taccctaact ttgatcttta ccattggttt ttctgctctt gctggaactg
    14761 tcggtggagg aggattagga gatgtagcta ttcgctatgg ttatgaaaga tttaacaaag
    14821 aagttatgat tcaaactgta gttattttac ttatattagt tcaattagtt caaattctag
    14881 gtaatttatt ttatacttgg gctaaaaata gtaaaactac atatatcatt gccactctat
    14941 tgatttta
//
LOCUS       DAQSLY010000032        14518 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.032, whole genome shotgun sequence.
ACCESSION   DAQSLY010000032 DAQSLY010000000
VERSION     DAQSLY010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.032"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..820)
                     /locus_tag="R2H98_000759"
     CDS             complement(<1..820)
                     /locus_tag="R2H98_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEE9023655.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVIEKAKYFKSDENIEFIFVEGY
                     SSKNHELKNFIQANHHIYLKDMEQKAFSQGKCRNLGASCAHSNVLLFLDVDCYISLDN
                     FGKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYNDKFWDILIQEDLFTARNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYMYHFYHIEPNQNAYMQNKDKNHQ"
     gene            complement(820..1767)
                     /locus_tag="R2H98_000760"
     CDS             complement(820..1767)
                     /locus_tag="R2H98_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEE9023656.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEERVIGIIQLYAIGNV"
     gene            complement(1777..3435)
                     /locus_tag="R2H98_000761"
     CDS             complement(1777..3435)
                     /locus_tag="R2H98_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEE9023657.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVVQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3437..4555)
                     /locus_tag="R2H98_000762"
     CDS             complement(3437..4555)
                     /locus_tag="R2H98_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEE9023658.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTANEDLNYLKGYIESSDMLRILDEKIKLKDL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNGLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(4555..5217)
                     /locus_tag="R2H98_000763"
     CDS             complement(4555..5217)
                     /locus_tag="R2H98_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023659.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGQE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHDVAEIKEWCDKIIYMKNGQIAVYDDVDEGIAVYQG
                     KA"
     gene            complement(5214..5996)
                     /locus_tag="R2H98_000764"
     CDS             complement(5214..5996)
                     /locus_tag="R2H98_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023660.1"
                     /translation="MLNVIHALFFRELKTRFGANRHLGYLWVVGEPMSITLAITVIVT
                     IIREYHHQVMPEGISIFMFLISGIMPYFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRFDVFPVHLLGVLFCIFLLMCSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLMPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(6068..6475)
                     /locus_tag="R2H98_000765"
     CDS             complement(6068..6475)
                     /locus_tag="R2H98_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023661.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQKKIYFSKFPFAI
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6550..7113
                     /gene="ciaI"
                     /locus_tag="R2H98_000766"
     CDS             6550..7113
                     /gene="ciaI"
                     /locus_tag="R2H98_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEE9023662.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            7149..7838
                     /gene="dut"
                     /locus_tag="R2H98_000767"
     CDS             7149..7838
                     /gene="dut"
                     /locus_tag="R2H98_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEE9023663.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            7840..8553
                     /locus_tag="R2H98_000768"
     CDS             7840..8553
                     /locus_tag="R2H98_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEE9023664.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILNKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(8536..9501)
                     /gene="tilS"
                     /locus_tag="R2H98_000769"
     CDS             complement(8536..9501)
                     /gene="tilS"
                     /locus_tag="R2H98_000769"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEE9023665.1"
                     /translation="MQIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9491..10810)
                     /gene="rimO"
                     /locus_tag="R2H98_000770"
     CDS             complement(9491..10810)
                     /gene="rimO"
                     /locus_tag="R2H98_000770"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEE9023666.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            10884..11981
                     /gene="prfB"
                     /locus_tag="R2H98_000771"
     CDS             10884..11981
                     /gene="prfB"
                     /locus_tag="R2H98_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEE9023667.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12139..12345)
                     /locus_tag="R2H98_000772"
     CDS             complement(12139..12345)
                     /locus_tag="R2H98_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023668.1"
                     /translation="MFDLGNQEIMKKYPNHKLYDYTSVRTISDINNPEGKIKEMKRDL
                     EIDKTPYSNYVFLLNPNDKKTIKL"
     gene            complement(12575..13693)
                     /gene="truD"
                     /locus_tag="R2H98_000773"
     CDS             complement(12575..13693)
                     /gene="truD"
                     /locus_tag="R2H98_000773"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEE9023669.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDVSAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13662..14483)
                     /locus_tag="R2H98_000774"
     CDS             complement(13662..14483)
                     /locus_tag="R2H98_000774"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEE9023670.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKYGVKLNIFGKAVKGKYEFRGREHHF"
BASE COUNT         5011 a         2595 c         1852 g         5060 t
ORIGIN      
        1 actgatggtt cttatcttta ttttgcatat aagcattttg attgggttct atatgataaa
       61 aatgatacat ataaattcca taaaaacaag cctcataacc aagtaatgaa aaccaagatc
      121 taaaaccttt aaagttaaaa aaattccaat ttctagcatc ataacttaaa ttagtaggca
      181 ttttttcaaa actcacacaa gcttttaaaa ttctagcaaa aagatcaaaa tcttcataac
      241 catgtccaat aaaattttca tcatttccgc ctaatcttaa aaactgatgt ttatttatca
      301 caatacttga agtagaactt ggggcaaaaa attttaccca agtatttctt gctgtaaata
      361 aatcctcttg tatcaaaata tcccaaaatt tatcattgta ttgttttaat ttttcattag
      421 cttctttatt aagatacact acaggtaaaa ctatcaaagc attgatattt tgagaaatat
      481 ttttaatttg aattagtttt aaaatttttc caaaattatc caaggaaata taacaatcca
      541 catccaaaaa caaaagaaca tttgaatgcg cacaacttgc tcctaaattt ctgcattttc
      601 cttgagaaaa agctttttgc tccatatctt taagataaat atgatggttt gcttggataa
      661 aatttttaag ctcgtgattt ttagatgaat atccttcaac aaaaataaat tctatattct
      721 catcactttt aaaatatttt gctttctcaa taaccctttc ttctatataa ggacgctcct
      781 tacttaagcc aaaaggaata ataacagata aaagagccat taaacatttc ctatagcata
      841 aagctggata atccctataa ccctttcttc tttccctact ataatttctt tgattttatg
      901 ttttagcatg atctcctctg cttcacttgc catagcatca gcatcgacta ctttaggatt
      961 tgtactcatg atttctttag ctctaaaatc aaatcttggt ttatcgcttg tctttaaagc
     1021 acgacgcaaa tccccatcag tgatgatacc cactaatttt tcattctcaa gtaccacaca
     1081 aagccctagt tttccactag tcatcacatc aacaagatcg ttaaattcag tatcaggatg
     1141 cactatagga aggttacttg aaaccataag atcttttacc ttggttaaaa gcttacgtcc
     1201 caaacttccc cctggatgaa aaagagcaaa atcatcaggc ttgaaatttc ttaccttcat
     1261 caaagcagca gctaaagcat cccccataac caaagttgcg gttgtcgaag acataggagc
     1321 aagctgcaaa ggacaagctt ccttttccac agctatattt aaaaatatat cgctttgctt
     1381 tacaagggtg gaattttttt taccacacat tactataagt ggaattttac gcttttttat
     1441 agctggaatg atttttaaaa tttcttcagt ttctcctgaa tttgaaatag caattaaaac
     1501 atcttcagga gttagcattc caagatctcc atgcaaagcc tctcctggat ggatgaaaaa
     1561 gcttggcgtt cctgtacttg ctaaagtagc tgctatctta gcacctatat gacctgattt
     1621 acccattcca ctgactatgc aacgcccttt ggtatttagc atcaaattca cagcttgatt
     1681 aaaattttca tctaaatttt tagccaaatc caaaatagct tgtgcttctt tttcaaagac
     1741 ttctttggct atttcaagag tattcatttt taaaccttaa agattaagta caacattggt
     1801 tgcaatagca atttgataaa gaatttgagt taacattgaa aaaatttgca aattctcact
     1861 atctactttt ggcaatacca acacagaatc gcctcgtttc atatctatac cactatgata
     1921 tttttcagct tttccattgc ttcgtatcac taaaactttt gaagtatccg ctctttctcc
     1981 ataacctcct gcaagattga tataatatct taaatctttg cccttatcat acacaaaagc
     2041 tccaggtaaa gaaacctcac cttgaactat gatgagatta ttcttacttg gtacattaat
     2101 agtatcacca tcttctaaaa taaccgaatt ataggacttt ggattatcaa tgacaatttg
     2161 acccttaggc tctacttgct tagctctttg gataaattct aaaatcgttt ttgcttgttg
     2221 agctcttata gctgcacctt gagctgtaac agaaccacta gttaaagcta gagtttcaag
     2281 ctctttaagc tgagcattga taagttcttt ttgagttcta gctacacttt ttctaaacac
     2341 ttgtaaagct tgcatgtttg attgtggatt agctttaatt aatttagaaa tatcttctaa
     2401 agtcgttcct ttacccacaa ctaaagtttt taaaccatta tgctcgccat ttacacttat
     2461 agttatattt tcagaaacat actcagggtg aaattctacc tcatctcccg ttctaagtaa
     2521 aacttttgaa aattgcattt tattataagc actgacatca agtttatgat cttcaccata
     2581 actttttacg atagcattag tcacgatagg tttagcacct gatactctag ctaagtcagc
     2641 taaagtttta atatcatttg aaagttcaaa acgaaaaggt ctttgcacat caccgttaac
     2701 aaaagcgtaa ttttgaacat ttcctactaa aataacatct ccacttctaa aaggaaaaag
     2761 atccatttgc ccctttagta aaaaatcata taaatcaata ttttttatca cgctgttatt
     2821 acgcaaaatt tgaatatctc taaaacttcc atattctaaa tttatacccc ctgctttatc
     2881 aagatactgg accactgaat ccgaactaag tccttgataa agtcctggag cattaacgct
     2941 tcctgttaca aaaacactga cattttgata agcattcata tctgcataaa caaaaacatt
     3001 gcttttatag attttattaa cacgtgcttt tataacactt acaagggcgc tatttttcac
     3061 acctagtaaa tttacagctc ctactttagg gataaaaata tttccttgag aatccaccac
     3121 taaaacttgc gaaaactcaa cagctcccca aattttaaga ctgatttgat caccaactgc
     3181 gatcttataa tctgggttat aaactctttg attgtaattt ttaaaatttc cattaaaaag
     3241 atgagcgcca aatactaaaa tttgatgaat ttttgtaaga ttattttctt tatttgctat
     3301 atcataattt gagcttaaat tttgatctat gctagttgta gtagaacctt gatcctctgc
     3361 tgaaatgatt tgtgaaacat ccacagctcc aaaacataaa atacaactaa aaagtaaaat
     3421 taatattttt ttcattttaa tacttatgct cctctattat cattttaata aatttaacaa
     3481 tcccaaaaat caaagataat acaataaatg ctgttaaaat atcataaatt ctttcaggat
     3541 attttgcgct ttctggaata tctggacttt gaatgatgac aagttgtttt atttttctta
     3601 atgcttctat tctagcactt tcataagctt ttaaagctgc ttcataagct ttttgcgcaa
     3661 aagtagcttc tatagttaga tcttgaaatt tagcagccaa atcattaagc ttttgagaag
     3721 aattgttagc tgaaatttta gatttttccc ttaaaagctg ttttttaatc gcttcaattt
     3781 ctgctttaag tgctactact tcaggtgctg catcattcat atagctttgt aaagttaaaa
     3841 gtttagcttc tttttgagct aaattagtct caatttgcgc aaccaaactt gctttagctt
     3901 cagcttgttt caagggatca aaaaccccat atttattttg aaaagcaatc aaaccatttt
     3961 gtgctttttg atatcgttct ttgtattttt gtacttcatt ttcagcaaaa gccatttgtt
     4021 ctctagctgc tttatgagag atttcgttga taaacttttc gctttcttgc ataatagttt
     4081 gagcaatcaa atgagctgat ttaggtgtaa aaccttctac ttctacctgc aaaagcttag
     4141 tagtttcatc cgtatgcacc ttaactcttg cttggtaata tttaagataa gattctattg
     4201 agcttgaatc ccaaatttta aaaggcaaat ctatatgttg ttcttggtaa agatctttaa
     4261 gtttgatttt ctcatctaaa attcttaaca tatcacttga ttctatataa ccttttagat
     4321 aatttaaatc ttcgtttgct gtagaagtgc tactaagcaa agacaaaatt ccacttgttt
     4381 gagcactttc tccacttgtt gatctaacat ctaaaatcat cgtgcttaca tatcttggtg
     4441 ctgcaatcaa tgtataataa atcacaacaa aaatcattat aaaccaaaca attttaaaag
     4501 aatcaaatat gcttaaatct ttgatttttt ctaataaagt tttattttct tccattaagc
     4561 ttttccttga tatacagcta ttccttcatc tacatcatca taaaccgcaa tttgtccatt
     4621 tttcatataa attattttat cacaccattc tttaatttca gctacatcat gagataccat
     4681 aatcactttt gatttgctta atctttccct atataatttt acgctttttt ctctaaaagc
     4741 aggatctcca acagctccag cttcatcgat taaataataa tcaaaatcaa aggccatact
     4801 aagtccaaaa gctattctag cactcattcc cgaagaataa gtcttcatag gctcatcaaa
     4861 aaatttccca agctctgcaa aatcttctac gaattttact ttttcttgaa gttcttgtcc
     4921 tttataacca tatactctag ctacaaattt agcattatcc ctagcagtta aagaaccttg
     4981 aaaagctcca tttaaaccca aaggccagga taatttttta ttagtaatta tcttaccact
     5041 atcaggaagc tctgccccgc ttaaaagtct catgagagtg gacttacctg caccattacc
     5101 ccccatcaat cctatgctac aattttcagg aaattcaaaa gtaaaatttt taaaaacata
     5161 atgtcttcca ccgctaaata aaggataaga tttagttaga ttaattagct ttatcattct
     5221 ttttttgccg ccgttagagc ttgtctatta tagtagtaaa taaaaagtcc tataaataaa
     5281 acaagtaaaa tccaaaatat agcataaaaa taactatatt catcttgcaa aggataattc
     5341 tcaaaaaaat taaatcttaa aagctccatt atgtgaagca aaggattata ataaaatata
     5401 tcaagtaaag gtcttggcat aagccaagta ggaaatataa tcccggaact ccaataaaac
     5461 actatgctaa aataagctaa taaagttctt aaaggctcta caaaatgcca aataatagca
     5521 aaacaaatcc ccaaagcaaa agctgagcac ataagtaaaa aaatacaaaa taaaactccg
     5581 agtaaatgaa cggggaatac atcaaatcta aaaaaccatc ctgcaaaaaa aagcacagtg
     5641 ataaaaatca caaaataaat acaaaattca agcaaagttc tagcaataaa tacatgtata
     5701 ggctttacag gtttataagc aaaaagagcc aaatttgcct gagtaccatt cataagctga
     5761 gttactatac ttctaaacat aaaataaggc ataatacctg aaattaaaaa cataaaaata
     5821 gaaattcctt caggcataac ttgatgatga tattctctta taatggtaac aattactgta
     5881 atagcaagtg ttattgacat tggttctcca actacccaaa gataacccaa atgcctatta
     5941 gcaccaaatc tagtttttaa ctctctaaaa aataaagcgt gaattacatt taacatttat
     6001 tttctatacc taacaattta cataaactat aatcataact cattttttta aacaaaatca
     6061 taaaaattta ttttttacaa aactcaagct ttttactaag tcctaaagca ttgttagtaa
     6121 atttaagcca aaaaagctct aaagcataaa tttttgcact tttatcaagt atagcaaagg
     6181 gaaatttaga aaaataaatt ttcttttgct ccttacttgc cattttaaac tcggccttag
     6241 cttgcacacc ttttaaaaag gctattttac tttctttggc tatattaagt gctatacttg
     6301 aattttcact ggctaatctt atatgcttag tatcttcatg ggaagcgata ataaaagcta
     6361 aattcttttc atcaaaagca taaaaagcac tagccgtata aacacctttt tcatcaatca
     6421 tagcccaaga taaaagctgc tcatttttta taaattctaa aattctttca tccatattat
     6481 aaaaattata ctaaaatatt tttaaaaata accgattttt gatttaaact ataaatataa
     6541 ggggaagaaa tgcaaattga tgctagtaaa aaccaaagtt tttcgatgga ttatacaaca
     6601 aaaagtggca aacacttagc cttatctatg tatgacaatc aaagcataag ttatgcaaat
     6661 aatgaagaag gtaaaactct taatcttaag cgtcagtatg gttttagctt tacttttgaa
     6721 ggctctaaac tcacacaaaa tgatcttgat gagattaaaa atgctatgaa agaagttgaa
     6781 cctatgatca aagatttttt agcaaattct aaagttggag agttaaagcc aaaggaaatt
     6841 atcgaatcag ctatgcaaat ggcaaatgtt ctaccaactc caaatgataa aaaccatcaa
     6901 aatgctatta tgaataattt tacaaataaa ctcagtgatt tgctaaaaca aaatcaaaca
     6961 aatgataaag atatcaatac ttctatgctt gaagatagca aaaaacttct tgatgaagtt
     7021 ttagaacaaa tgaaaaaaca acttgaaaaa caacaagaaa aagccaagga aaatcaagat
     7081 aagacagatg atagtttaaa tctttacgct taaatcatat aatattaaaa attatcaagg
     7141 agttttaaat gacaaatatc gaaattttag aaaatatgct caaactccaa caaaaactta
     7201 acgacgaaac aaacggctta aattgggaaa atggctacac caaagaagga aaactgatca
     7261 gttggagacg ctgtatttat atggaatgtg cagaacttat agactctttt gcatggaaac
     7321 attggaaaaa catttcaaat ccgacaaatt gggaaaatgt gcgtatagag attgtcgata
     7381 tttggcattt tattttaagt cttttacttg aagagtatcg cgataaaaac aataaagatt
     7441 tcaaagctat agccacagaa gttaatgctg taagcgtgtt tcaagatttt tgcaaagaag
     7501 aagaataccc taatgagggt gatatttatg gcattttaaa tgatatagag cttattatcc
     7561 ataaatgcag tggttttgga tttaatcttg gagaattact ttcaacctat tttactctag
     7621 ctattaaatg tgggctaaat cttgaaattc tttataagac ctacataggt aaaaatgttt
     7681 taaatatttt tagacaaaac aatggttaca aagatggtag ctataaaaaa acttggaatg
     7741 gcaaagaaga caatgaagtt ttagctcaaa ttttagaaca agagcttgat tttgatacta
     7801 tttataaaaa actagaagaa tgctacaaaa aggcataatt tggatatttt aaaacttgca
     7861 atcaaagatt ttttaagtct taaattttta aaatttgcct taattccttt gatttttagc
     7921 cttatactga tgcttttttt aggagtactt ggcttttcgg ccttgcttga ttattttaat
     7981 tctttattta gcgttggaga agattcgttt tgggcgtggt tttatgctct tcattttgta
     8041 caaattttaa tcaccatcat aagtttttta ttttcaggtt ttattgttgt ttttgcttcg
     8101 gtttttttag ccctttttat cacttctttt cttactcctt ttatcgctaa agaaatcaac
     8161 caaaaatatt accattatga taatacaaac gaagtttcaa ccttaaaaac tatctttgaa
     8221 atttttaaaa tatttataaa atttataggg attttattgc tttgcacctt ggctttattt
     8281 ttacctttta taaatatttt tgtatattat cttgcttttt attatctctt tcacaaactt
     8341 ttaatgattg atgttacaag cacgatttta aacaaagaaa gttttaaaaa ttttcattct
     8401 gatttttcgc ctttagagtt taaatttagc actctttgtt tttatctact ctcatcagta
     8461 ccacttttag gacttttttt gcaagtattt tttgtgattt ttctcacaca tttaagctat
     8521 caaagaattt taaaactaaa agctaaggct tgaaatatcg attttgtgat tgtataaata
     8581 agctcttaaa agtcttggaa ttttagctat tctacactct tctttgaaat ttttaggtaa
     8641 tttttgacaa gtttcatact caaaaacaat agcttgttcg tttttatatg caagtgctat
     8701 tttaccacct aaaacacaat caccctttaa aagctctttt ctttgtgccg tgcttaaaag
     8761 caaacctttc attttcaccg ctctagcaat caagctttca tttttagggc aaataagaag
     8821 tccttgaatt tctttgatat tttcaaaatc ataaagtttt ttcctgtctt catcaagata
     8881 agaaaaactt ctttttaaac cctgatgaaa ttcactcaca aaggcattag agaaattttt
     8941 tcttatataa tttctaaaat atttttcatt ttcattactt tcatcatgga aataaaaaat
     9001 atctttttct tttaaaaaag atgaaatttc atctttactt ataaagagta aagggcgtaa
     9061 aagtgtataa tttgagcgtt tttcacattc ttgcatacct aaaatttcag ccaaacctgc
     9121 gcctcgtgaa agttgcatca aaaaccattc aaattgatcg tttaaatgat gggctaagat
     9181 aagatggtca taaccttgct caagacaaat tttttcaaaa aaatcatagc gaaaatctct
     9241 ggcttttttt tcaaagttac tttgaaattt aggagcgtgt tttatgaaaa tttttttatg
     9301 aaattttaaa gcaagttctt tggcttttaa ctcttctaaa tcactatttt ttctagtttt
     9361 gtaatttatc atcacaagat caaagtcgat cttttcttgc attaaaagat aaaaaagcac
     9421 actagaatca cttccataag aaaaagcgag taaattttta ccccttttta aaagggctaa
     9481 aatttcatct ttaatttgca tctacttttc ttaaagcctt agcaaggagt tttttatcaa
     9541 ggttttgtaa aatttcacat tcataaattt gccccatttc caaatttcca cattcgcttt
     9601 cattaataag aatttcccca tcaatctctc tatcccatct taaatcttta gctgcgataa
     9661 aaaactctcc ctcactactt tctcctgtgc aaactactaa acgcttttgc cctacttctt
     9721 tttcaaaact tttttctatc acttcatcaa caattttttc tatgatttta agccttttat
     9781 tgatcacttt aaaaggcact tgctccatat caaaagcggc tgtatcttct tccttagaat
     9841 acgcaaaaac actcacccta tcaaaaccaa agtctttaac aaactcacaa agctcttcaa
     9901 aatctgcctc actttcacct ggatgcccta cgataaagcc cgtgcgtaaa aagctatttg
     9961 gcgcactttt cattaaattt agcatttctt taagtcttgt gctatttgcc ccacgcttca
    10021 tgattttaag catattatca cttatgtgct gcaaaggcat atcaaaataa tttacaaaaa
    10081 tttcagaagc tataatgcgt ttaatcaaag cttcactcgc actcgtagga taaagatata
    10141 aaattctagc cgctcttatg cctttgattt tttccacctc atcgattaag cgtataagcc
    10201 catctttttc acccttatca aacaaataag aactcgtatc ttgtgcaata aaagaaaagt
    10261 ccttataacc tctagctacc aaatctttaa gctcagctat aatgctactt atctcacgag
    10321 attttaactt gcctttaaaa cttgggatgg cacaaaaaga gcatttttga ttacaacctt
    10381 cggcgatttt tataaaagca tgggaatttg aacctgtgat aatacgtttg gaattttcac
    10441 tctgcaaata agtcgaattt gaaaataaat ttgttttttt aagtatcatt tcatcgattc
    10501 tttcataatc acccacacct gtgaaaagat caacctcagg aagttctttc ataagttctt
    10561 cgcggtaacg ctgcatcaaa caacccgtaa ccaccaaaag agaatctttt tttctttgtt
    10621 cgtgcaaatc caaaatcgca ttaatacttt ctttttttgc actatcgata aaaccacaag
    10681 tatttacgat tataacatca gctttgcttg gttcatcgca aagttcataa gcactaaggc
    10741 gccctagcat gatctcacta tcgactaaat ttttattaca acctaaagac ataagataaa
    10801 gttttgacat ttttttccta tattaaagtt ttcttttgat ataatttttg actttaaaaa
    10861 tataattata gcaaagaaat tttatggata attacgaatt tagcgaactt ttaaaaactt
    10921 taaaaaacaa agtcggcaac atagcctcca tcatcaagcc tgaaaatatc caaacaaggc
    10981 ttaaagaaat cgaagagctt gaaaattctc cttctttttg gagtgatgtt aaacaagcag
    11041 gaatcatagg taaagaaaaa actaaaatca ccaatctact taaaaactat gaaaatgctt
    11101 ttaatgctct aaatgacgca agcgaacttt tcgatctggc caatagcgaa aacgatacag
    11161 aaacacttga agctttattt aatgacgcac caaaacttga agataccatc acaagtcttg
    11221 aaatttccat gcttttaagc ggggaaaatg atggtaaaaa tgccattgtt tccattcacc
    11281 caggtgcagg tggaacggaa agtaatgact gggcaagcat actttataga atgtatttaa
    11341 gattttgtga aagagaaggt tttaaagtcg aaactttaga ctttcaagaa ggcgaagaag
    11401 caggacttaa agatgtgagc tttttagtta aaggagaaaa tgcttatggt tatttaaaag
    11461 ctgaaaatgg tatccatcgt ttggtaagaa cttctccttt tgatagtgca ggacgccgtc
    11521 atacaagctt ttcaagtgtt atggtaagcc ctgaacttga tgatgatata gaaattgaaa
    11581 tcgaagaaaa agacataaga atagattatt acagagcaag cggtgcaggc ggacaacatg
    11641 tcaataaaac agaatcagct gtgagaatca cacattttcc aaccggcata gtcgtacaat
    11701 gccaaaatga cagaagtcag cacaaaaaca aagccaccgc ttttaaaatg ctaaaatctc
    11761 gcctttatga acttgaactc atgaaacaac aagatagtgc taatactgga gaaaaaagcg
    11821 agataggttg ggggcatcaa atccgttctt atgtgctttt cccttatcag caagtcaaag
    11881 acaatcgcag cggagaagct ttttctcaag tggataatat ccttgatggg gatatcaaaa
    11941 aaatgataga aggcgtttta attgccttaa aagcggagta acagcttaaa aataagtaat
    12001 ttctgcaaaa tgtcggtata aaaagaatta gaaagatagc gggattttcc cgcttgtttt
    12061 attatcttgc ataaaaccta agagcatcat tcacagaaca ataaactctt ttcttaaaat
    12121 ctttatcgca ataaacactc acaactttat agtcttttta tcgtttggat ttaataagaa
    12181 aacatagttt gagtatggag ttttatctat ttctaaatca cgcttcattt ctttaatttt
    12241 gccttctgga ttgttaatat cactaattgt tctgactgaa gtataatcat aaagtttatg
    12301 atttggatat tttttcataa tctcttgatt acctaaatca aacatagctt gatcgttgcc
    12361 attgtttttt tactcgacta aatcgccatc gccacaacct ataatcaaag tcatagctcc
    12421 taaagccaaa gcacttgtta aaatcttttt cattattttt gctcctagtt ttaaaattaa
    12481 attaatataa ctatacctaa atttaaaatt taaatatcat ttttgcaata aattctaaag
    12541 taaaaatcac gtaaaaattt aactcataat tatttcactc aaacaaattt ttatgcaaaa
    12601 tttcttctaa aaccacagta gcataagagc ctttttgcaa gaaaaactct atacaaaaat
    12661 gagctttttc ttcatcataa cgccatttta actcttctaa atatccccac ataaagcgtc
    12721 ttgaaccttg cattttagcc ttaaactcca aagtatcttt aaaaatttca ttttctaaat
    12781 ttaaggccaa accttctcct gtttcataag ccttagcacc gattaaaagc cccatggcgc
    12841 ttacatctct tgccttaaaa cgcccaagct cagcacttaa atcctcgcat aaaaaacact
    12901 ttccaaaagg ataatgccct aaaacctcac cttttaaaag cttaaaaaat tgttcttgtt
    12961 ttttaagttc cttagcttct tctttagaaa ttttataaat ttggatcaat tctttttcgc
    13021 taaaatcatt tgcaaaatgt gataactcca ctcttttact caaatagcga ttaaaaagct
    13081 cactttgaaa agctgaaatt aaaaactctt tcatttttac atttttcatt tttttgccac
    13141 gcaaaatttc aagcccttct ttataattat ccccaaattt tccaaaacgc tgataaccaa
    13201 aataattcgt aaaaccttgc ttatccaaat tcatcaaagc ttgttctagt tttaaagcat
    13261 cgcttggtaa aacttttttt aagcgtatga aaaaagtatt tccttttaaa tgccctattc
    13321 ttagcttgtt ttcatggata aaaatttcta aaattttaag tttaggatga gaaaaatttg
    13381 acaaaaaact ctcaaatttt ttaggcatag aaaggtattg aaaggttgat ccttgcttat
    13441 ctttaagccc tgcataacca aaatctctta ttttaacccc gcttgtttca cttaaaattt
    13501 ttaaagcttc atttgtggtt aaatcttttt tattgatatg caaaataaga tgttcaccct
    13561 taccgctaaa ttcatacaaa ggcctttcac gcactacaaa atcatcgcta tttttactaa
    13621 aatacgcatt aataggactg tgttttaaac tatacaaagg cttaaaaatg gtgttctctt
    13681 cctctaaatt catattttcc tttcactgct tttccaaaga tatttaattt cacgccgtat
    13741 tttttggcta ttgtttttat attttgacgc tctttttcat caaaagcaaa caaaatttca
    13801 tattcttctc cgctataaag cgtataatca tcaagttttt taaaccaaga aataccgcat
    13861 ttatttaagg ctagaagtct tgataaatcc ttgcttaaac catctgaaat atccatagca
    13921 caagaaatta aaggtgcgat ttcataaaaa aaactagctc ttaattttgg ctttataaat
    13981 acatggtttg gttttaaagt gcccccattt tgtaaaattt caagcccttt taaacttcgt
    14041 cctaattttc ccgtataagc aagtaaatgc ccctttttta aaccttttct aaaaacagct
    14101 ttatcgttaa tctttgaaat gatagtaaga ctaatgtcta ttttatcatt gcttatagta
    14161 tcaccgccta tgatttttat attaaatttc ctagctgttt ttaaaaaacc tttttgcaag
    14221 gctttgatct cattttcgct taaatttttt ggtaaagcaa gtcctaaaag tgcgtatttt
    14281 ggtacagcat tcattgaaat agcatctgag atattaacaa gcattgcttt tgtagcaatt
    14341 tgctctaagc taaaccactc tcttttaaaa tgcacatttt caaaaaacaa atccttacta
    14401 aaacaccaat catcaataat agctccatca tcgccatttt tttcatttaa aaaagctttg
    14461 ataataaaat cttctttgtt cataatgcgt gattttataa aatttccttt taaattct
//
LOCUS       DAQSLY010000033        13513 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.033, whole genome shotgun sequence.
ACCESSION   DAQSLY010000033 DAQSLY010000000
VERSION     DAQSLY010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13513
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.033"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..322
                     /locus_tag="R2H98_000775"
     CDS             <1..322
                     /locus_tag="R2H98_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023671.1"
                     /translation="SKNYEKDFNFISSLFIKKKQNLSKIIHFKVLKDDLKPNVKEKIH
                     FFAMFFTLFKLMAYVVLVAGFLFLHRQDKLDIFAYICGISSLLVCVFIFILYIKKYES
                     KKNY"
     gene            300..1487
                     /locus_tag="R2H98_000776"
     CDS             300..1487
                     /locus_tag="R2H98_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023672.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1480..3576
                     /locus_tag="R2H98_000777"
     CDS             1480..3576
                     /locus_tag="R2H98_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEE9023673.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENI
                     KEEKLNHNTKNQDEEKYIKVSKEETLADDAKTNIKQDVKNEENLPKKEVNANLDSSTK
                     THEENIKENPKFYETKTESKTSINTNTNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEF
                     IKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKN
                     LEHKLNLSIKDLVQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAVYNQANRLL
                     AQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEI
                     LISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDT
                     RNMKNLDLEMGMDKKV"
     gene            3573..3854
                     /locus_tag="R2H98_000778"
     CDS             3573..3854
                     /locus_tag="R2H98_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEE9023674.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(3851..4651)
                     /locus_tag="R2H98_000779"
     CDS             complement(3851..4651)
                     /locus_tag="R2H98_000779"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEE9023675.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKS
                     PCEYESLNALFTRTLQIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(4648..5772)
                     /locus_tag="R2H98_000780"
     CDS             complement(4648..5772)
                     /locus_tag="R2H98_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEE9023676.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYVSINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            5858..7153
                     /locus_tag="R2H98_000781"
     CDS             5858..7153
                     /locus_tag="R2H98_000781"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEE9023677.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            7156..7437
                     /locus_tag="R2H98_000782"
     CDS             7156..7437
                     /locus_tag="R2H98_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEE9023678.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            7434..9059
                     /locus_tag="R2H98_000783"
     CDS             7434..9059
                     /locus_tag="R2H98_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEE9023679.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNFHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLSKS"
     gene            complement(8956..9441)
                     /locus_tag="R2H98_000784"
     CDS             complement(8956..9441)
                     /locus_tag="R2H98_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023680.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEEIRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            9537..10028
                     /gene="mobB"
                     /locus_tag="R2H98_000785"
     CDS             9537..10028
                     /gene="mobB"
                     /locus_tag="R2H98_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEE9023681.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            10030..10872
                     /locus_tag="R2H98_000786"
     CDS             10030..10872
                     /locus_tag="R2H98_000786"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEE9023682.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            10865..11062
                     /locus_tag="R2H98_000787"
     CDS             10865..11062
                     /locus_tag="R2H98_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023683.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            11072..12958
                     /gene="metG"
                     /locus_tag="R2H98_000788"
     CDS             11072..12958
                     /gene="metG"
                     /locus_tag="R2H98_000788"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEE9023684.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDIYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFHNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKMILDNKLLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            12962..>13513
                     /locus_tag="R2H98_000789"
     CDS             12962..>13513
                     /locus_tag="R2H98_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023685.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNDK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQTLVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLN"
BASE COUNT         5139 a         1988 c         1910 g         4476 t
ORIGIN      
        1 atcaaaaaat tatgaaaaag attttaattt catttcatca ctttttatca aaaaaaaaca
       61 aaatttatca aaaattattc attttaaagt tctaaaagac gatttaaagc caaatgttaa
      121 agagaaaatc catttttttg ctatgttttt tactctcttt aaattgatgg cttatgtagt
      181 attggttgct ggatttttat ttttacatcg ccaagataaa ttagatatct ttgcttatat
      241 ttgtggaatt tcatccttgc tagtttgtgt gtttattttt attttatata taaaaaagta
      301 tgagtccaaa aaaaattatt aaatcaatga cagcactttt tgctggtatg gcatttttat
      361 ttgcaggtaa tgccttgata gtaagctcta taggtgttat attaaaagaa aacggagaaa
      421 gttctttagc tgttggagta gtaagttctt gtttttttgt aggcgctctt attggaacca
      481 tcagtgctca taaaattatt tctcgtatag gtcatatacg ctcttttggg ctatttggtg
      541 ctatttttgg aatttcagct atgcttcata cagtaagcga aaatcttatt ttttgggctg
      601 ttttaagatt tttcatagga atttgctact atggactttt aatggtcata gaatcatggc
      661 ttaatgaaaa aagcaaaaat gccattcgat ctagaatttt aggtttttat gaaattgttt
      721 tttatcttgc gtttggtatt ggagttttaa tcatagcgtt aaatttaagc aaacatagtg
      781 tatttatcct cagtgcaact ttaattttac tttcatcttt acctttaaat ctaattaaaa
      841 tcaaagaacc tgttttaccc gcatcaagtc ctatttctat acctaaaatt tttgatatag
      901 ctcctttagc tatcgtcaca agctttatag ccggaatgct tataaatggc tttttttcta
      961 tggcatcttt atttatactt ttgcaaggtt ttgatacaaa agcggtttct tattttatat
     1021 tttgtggggt tttaggtggt tttattgcac aaaccatcat aggaactatt tcagacaaac
     1081 ttggtcgcaa atttgccatt atcacttgtg caagtatagg atttatcact atgcttatat
     1141 ttatcttttt taaacttcat ttatatatgc aatatttttt aggaattact cttggtatag
     1201 gaatattttg cttatatgct ttagcacttg ctagagcaaa tgatgtttta gtaagcaaaa
     1261 ataaaggtgt agagttaggt cgtggggttc ttttttgtta ttctttgggc tctttgtttg
     1321 gccctttaat tttaggtttt ttaatgcaat attttgaaat caaaggtttt atatggtttt
     1381 atatagtttc tttagcattt ttaattcttt ttgctatcaa taaaccaaat attttaaata
     1441 aaaaatttaa gaaaaagcct ggaaatatgg tgatatttga tgattaatac tcaactagca
     1501 agtcaaattg ccaatacgca aaaaaatgat ttaaaagtag ataactctgc ttcaaaagat
     1561 aaaacaaatt taaaagacaa tccaaaagaa gcacttgcac aagctttaaa gcaaaattta
     1621 ggtttaagca aggacgctag tagtgaggaa atactagcaa aatttgttca aaatgaaaca
     1681 ggtaccaaat taaaagaact tgttaataaa cttttagatc aaatcaatgc tcaaaaaaat
     1741 cccgattccc ctgtacttaa acaaggaaaa aatttaaatt tagctcctaa ttttgctaat
     1801 gaattaaaaa tcttaagtac agaacttgca aaaagtgata cttttacaca agttttagac
     1861 agattaaatc aaattttaaa acctgccagt gaaataaaaa acaataactt agctcctttg
     1921 tttaaaaatt caggcgtatt tttagaagct aaattaaaag atgccctaaa cgaagaatta
     1981 ctacccaaaa gttttcattc tcttttaagt acaatcaaag gtcttagtag cgaaaaacta
     2041 agcgttcaga tagcccagct tgcaaataca aatttaagcc caaaagacac tttaaaagaa
     2101 ttaaaaaata ttattaattc tagcaaaaat gaaaataagc aaattttaaa tcaaagttct
     2161 tttaaagcac ttttaaattt aagttctaaa ttggaaaatt ttaaaaatta tataagtaaa
     2221 aatcccagtc atgctcaaga aaaaatcacc cctatagcta ataaaatttt aaaagaatta
     2281 aattccatca aaaatgattt tttcaaagct cttaataagc cagaaaattt aatgataaaa
     2341 gatccaaaca tccttaagca aactgctacc gcctttgaaa aacttgaaaa tactttaaaa
     2401 aatatactag gcaatcaagc ttctaaaata caagataaag aaaatatttt agaaaatctt
     2461 ttaagtaaca aagaaaatat caaagaagaa aaacttaatc ataacacaaa aaaccaagat
     2521 gaagaaaaat atataaaagt atcaaaagaa gaaactctcg cagatgatgc taaaaccaat
     2581 attaagcaag atgtaaaaaa cgaagaaaat ttacctaaaa aagaagttaa tgcaaattta
     2641 gattctagca caaaaactca cgaagaaaat atcaaagaaa atccaaaatt ttatgaaaca
     2701 aaaacagaaa gcaaaacttc aatcaataca aatactaaca caaacaacac gcaaaattta
     2761 aataattctc aaaatattca atctaacaat aaccaaacta tgcaaaatat ttttaaaaat
     2821 caggaattta taaaacaaaa tattgtaaaa aatttagcat ttaatgtaga aaatttagat
     2881 ctagaacaag tgcaagattt aagtaaaaat ttaagcaatc tttctcgtag acttaatgaa
     2941 agcttaaaag aacttgaacc ctatactcaa aatgccaagc ttaatcaagc agaacttaaa
     3001 aatctcgaac acaaactcaa tctttctatc aaagatctag tgcaaattaa accaaaaaca
     3061 gaacaagata tagctgaatc tttacatcat gatgtaaaat caacactttt gcaaatttca
     3121 aatttggcta aaaatgaagg caatgaagct gtatacaatc aagctaatcg tcttttagcg
     3181 caaattgaaa tcaatcagct tatgtcttta gctaatgatt ctatcaatac ttatctgcct
     3241 ttttcttggg atgatttaaa tgattctaaa attatgttta gacgcggaaa aaaggacaaa
     3301 ttttttgctc agattaaact cgaatttgca aaacttgggg atttagaaat tcttatttct
     3361 ttaaataatg aaaaatatat agatattaat attatggcag aaaatattga atttagaaaa
     3421 accatctatg aaaatgccca tgagcttaaa agaaatatca ataaagcagg acttttaagt
     3481 gcaaatttct ttgtaggtga tatcataaga agtaaatttg atactagaaa tatgaaaaat
     3541 ttagatcttg aaatgggtat ggataaaaaa gtatgagcaa aatcaaaaga tcgattaaaa
     3601 aagctgtagc tctaggctat caaaaagaaa aaaactctgc accaaaagtg cttgcaagtg
     3661 gcaaaggaga aagtgctgct aaaattattt ctttagccaa ggaacacgga gttcctatta
     3721 aagaagatga agatttaata gaaattttaa gcaagcttga cttaggtgat gaaattccac
     3781 ctaatatgta taaagctgta gctgaagttt ttgcctttat ctatcaaatg gcaaataaaa
     3841 ctcctaaaaa ctaatccgct attttttctc caaatttaat accctgccct acttttaaat
     3901 taaaagttaa aagtcctttt tgagagatta aaactatagt agaacctagc tcaaaatttc
     3961 ctagttcttc gccttttttg aaatttaaat tttcatattt tctagtaaaa ttatgagaaa
     4021 ttttagcatt ggtttgtatg cttgcatcaa aattaaaacg catttttcct acattttgcg
     4081 ctcctacaaa aacaagccaa aaaatacctt tttcattttg acatttcaag ctcactcttt
     4141 cattttttac atataaatta ctaatgcgtt ctaaatgttt ttcatttacg ctataaagca
     4201 ctccacttgt gtaagttgca cttaaaattt gcatatcaca agggctgtga taacgatgat
     4261 aatcttttgg agaaagataa atattgacat aatcaagccc atttttaagc tcatcttttt
     4321 caaagctatc ttttaaaagc tcctcaatgc tataagtatg tccttttata gaaaaagcaa
     4381 aatgttcttc atttgccaaa aaagtacttc cacactctaa aattttacca tcacttggac
     4441 tgataaaacc ttcttcaagc tttcttggaa tttgcaaagt tcttgtaaaa agagcattta
     4501 aactctcgta ttcacaaggg cttttaaatt cactcatatc gatattaaaa tacttaacat
     4561 aattttcatt aataactttt tgtatcattt taggaaattt aatccccgct acaaaaccaa
     4621 aaagtctcga actttctttt gaaaaactca tttttttcct tttaaattta aaatcactat
     4681 ttcactcgga gcaaaaactc taagacttgg cccccaaaat cctgctccac tactcacata
     4741 aagcttagtt ttttctccta aatcataaag cccatgaaca aaaccttgct gaagtttaac
     4801 taaaaacata aaagggaaaa tttgccctcc atgtgtatgc ccacttaaaa caagatcaaa
     4861 atcacttaaa tcataaagca aagctgtttt aggttgatgt gtgagtaaaa tactagcttt
     4921 acttgtattt aaatccactt ttattcttgc taaatcagga gcatataaac ccctatcaag
     4981 tccggctaaa tctccaagtc cagcaatatt tataaaaccc aaatctaaat tttgattgac
     5041 taaaattttc atattagtat gttttctaag caaatccaaa acttcattga taccatgata
     5101 atactcatga tttcccaaag cataaaaagt tccgtaagtg gagttaaaat cattaagttt
     5161 tgagatgtaa ttttttaaat ctttaggatt ggtatcaatc agatccccta ctattacaac
     5221 catatcagga ctttgcaaat tcactttagt gatgagcttg tctaaaaaat tttcatgcaa
     5281 atttttaccc aaatgtatat cagtaagcat gacaattttt aaatcttttt taagatttgg
     5341 tatttcaaca tcaacactct ttacttcagg tgtttttaga gcattattta tacttacata
     5401 aattaaaaac acacttaaaa ctataagaga aagttcaaaa atcaaacgca aaataagatt
     5461 atatgtttta tctcttttac ccataagagc taaaatcaat ttaacaaaat cccatgctaa
     5521 agtcataaaa aacaaacaat aagtcggcgc ataaaacatg gctaaaattt cataccaagt
     5581 atcacttaaa tattcatctc tacgaaatat taaaaacaca gcttgagcta aaaaaagcac
     5641 aataaaaata aaggaaaaaa ttttataaaa atacttaaaa agagtaattt tcttgattaa
     5701 tcttttataa atataaacat ttgctaagcc aaaaattaat aacacaatga aagaaaaaat
     5761 taaaaatatc ataaaagtat tataaccaag taaaattaaa tatccgtata aatttttctg
     5821 ttataataag cttttaaata attttaaagg ctataagatg taccgttttg caccttctcc
     5881 cacaggtgat atgcacatag gaaatttacg cgcagcaatt tttaattata tctgtgcaag
     5941 acaaaaaaat atggatttta tcttacgtat tgaagatact gataaggcta gaaatatagc
     6001 aggaaaagaa gaagaaatca aagaaatttt aaatcttttt agtatttcat ggcagcatta
     6061 ctatatacaa agtgaaaatt taaaattcca tcgccaaatg gctttaaaac ttgtaagcga
     6121 aaaaaaagct tttgcttgtt tttgcaccga agaagaactt gaagcaaaaa aagagctggc
     6181 taaaaaacaa ggtaaagctt atcgctacga tggcacttgt gaaaaactag ccgatattga
     6241 tgttttagaa tgtgaaaaac cctttgttat ccgtcttaaa aaacctactc atactatgaa
     6301 atttactgat tttatcaaag gcgagcttag ttttgagcct gaaaacatag actcttttgt
     6361 gattatgaga acggataaaa ctccaactta taattttgct tgtgcggttg atgatatgct
     6421 tgaaaatgtc acttgtatta tacgcggaga agatcatgtt tcaaacactc caaaacaaga
     6481 acatatccgc gcaagcttag gttataataa agccatgact tatgcacact tgcctatcat
     6541 tttaaacgaa gaaggtgtta aaatgagtaa aagagaagca cattcttctg taaaatggct
     6601 acttgaaagt ggaattttac ctagcgcaat cgcaaattat ctgatcatgc taggcaataa
     6661 aactccttgt gaaattttta ccttagaaga ggctataaaa tggtttgata tttctaaagt
     6721 ttcaaaagct cccgcaagat ttgatcttaa aaaacttttg caaattaatc gcgaacatat
     6781 caaaatgata aaagatgatg agcttaataa aattttagat ttaaacaaag atcttgcacc
     6841 acttgctaaa ttttacactc aagaagcaag tactataaaa gaacttaaag aaaaaatgca
     6901 agctattttt aacgcaaaaa attttggcga gtttgaaaca gaatgtaaaa ttttaaaaga
     6961 actcttaaaa gatattgaac tttttgaaaa ttatgaagat tttaaaaatg aacttttaaa
     7021 caaaagcaac ttaaaaggta aaaaattttt catgccttta aggataattt taacaggaaa
     7081 tatccacggg cctgagctta gcgatcttta tccttatatt aaaaatttta ttcacgaatt
     7141 agcaaggatt taactatggt tatagactct tttattattt ctatttttca agtactacaa
     7201 attgtcatta acatttatac ttggattatt atcatcacag cacttctaag ctgggtaaac
     7261 cctgatcctt ataatcctat agtgcaaatt ttatataaac taagctaccc tgcttacgcc
     7321 ttagttagaa aaattccaac acgcattggt aatattgatc ttgcgccttt gattatagtc
     7381 ttagcattgc agtttcttgg catttttctt gggaatatct taaggagtat attgtgataa
     7441 aaaaaatact cgttttttta tttatttttt caagtttaaa tgctacacaa tatagtatag
     7501 aaaaactcaa aaaggaagaa aattcacttg ctaaggatta ttatatttat aggcttttag
     7561 aaaaaaataa aatcagtaaa aaagatgcac aggatttaaa ttttcatatt tttcgctata
     7621 taggaaaaat taaatctgaa cttgaaaaaa tcatcccttt aaagccttat atcaacccaa
     7681 aatatgctaa atgctatacc tatacagcaa atactatctt agatgcaaat ttaacttgtc
     7741 aaagtgtgcg cttaaattca ttagttttta tagcgagtct aaattccaaa gaccgaacta
     7801 ctttagctca aacctttaaa aatcaaagac ctgatttgac aaatttattg ctagctttta
     7861 atacttctga tcctatgagc tatatagtac aaaaagaaga tattaatggt ttttttaaac
     7921 tttataatta ttctaaaaaa tacgacttag atttaaatac aagtttagtc aataaactac
     7981 caaaccacat tggttttaaa gattttgcac aaaatattat tattaaaaaa gaaaatccaa
     8041 aatttagata ttctatgcta gaaataaatc ctgaaaatgt aagtgaagat tctgctttct
     8101 atttaggagt caatgcctta acttatgata aaacagagct tgcttatgac ttttttaaaa
     8161 aggcggcgca aagttttaaa tcgcaaagta ataaagacaa tgctatattt tggatgtggt
     8221 tgattaaaaa caatgaagaa gatttaaaaa ctttatcgca aagttcttct ttaaatattt
     8281 atagtcttta cgcaaaagaa cttaccaaca caccttttcc aaagatagaa agccttaatc
     8341 caagcaagaa aaaaaataat tttaatatgc aagatccttt tgcttggcaa aaaataaaca
     8401 aacaaattcg cgatgctaac gcaagtcaac tagatgtctt ggcaaaagaa tttgacacac
     8461 aagaaacctt gcctatttat gcttacatat tagaacgcaa aaataatttt aaaaaacatt
     8521 attttataat gccttattat gacaatataa aagactataa caaaacaaga caagctttaa
     8581 ttttggctat tgccagacaa gaaagtcgtt ttattccaac tgctatttca gtttcttatg
     8641 ctttaggcat gatgcaattt atgccatttt tggccaatca cataggggaa aaagaattaa
     8701 aaattccaaa tttcgatcaa gattttatgt ttaaacctga aatagcatat tactttggaa
     8761 actatcatct aaattacctt gaatcacgtt taaaatctcc actttttgtc gcttatgctt
     8821 ataatggcgg tataggattt actaaccgta tgcttgcaag aaatgatatg tttaagacag
     8881 gcaaatttga acctttcttg tctatggaac tagttcctta tcaagaaagc cgaatttacg
     8941 gaaaaaaagt tctagctaat tatattgtgt atcgacatct tctgaacgat agtataaaga
     9001 tttcggatat ttttgaaaat ttaattcaaa acaaggcaaa tgatctaagc aaatcttagc
     9061 tacaagccta atctcttcct tgacactagg aagagatgct ttaaaataat cagtatagtt
     9121 gttttgtatt atatatttta aatactcatc atccaatttt tcaatattgg cttttttatt
     9181 attgataaaa acttctaaat tttgaatttt taatgtattt ggagtaaaag ataaagctaa
     9241 tacatcatct ttacttgtct tgtctagaat tgggtttaaa taagacatag ttataatggc
     9301 attaatctta tcttgtgtga ttttgtattt ttgagtaaac attaaagttt gagattttaa
     9361 atttgtatcc acaatcgcct gatcttttaa agaacaagct ccaagcaaaa aagcacctaa
     9421 aattacacta taaattttca ttctttttcc atatttttta gtattattgt agccttttaa
     9481 ccctattttt tggtttaaaa agatataatt ttgcaaaaaa attaagagta tattttatga
     9541 aacaacttat tatagctttt agcgggcctt caaattcagg aaaaactaca ctcataacca
     9601 aaatagctga taattttttg caacaaaatt taaaagtttt aatcattaaa catgatcctg
     9661 ccgataaagc tcaatttgat tttaacggta aagatagttt taaatttttt caaagtggag
     9721 ctgaagtcat ggttttaagc cctacaagaa caactttttt ttctcatgaa aatagagata
     9781 ttttaaaagc tttaaaatta agccctgatt ttgacatttg tttggttgaa ggattaaaaa
     9841 ctcttgattt accacgcatt agcgtatttt gcaaagaaat tgatgaaagt tattttattt
     9901 tttcaaacgc cattgcaagc tatgaaaaaa tttctcaccc ttatcttact tggcttgatt
     9961 taaacgatat acaagctatt tgccaataca tacttaaaaa tgctaaaaat ttacaaggag
    10021 aattataaaa tgcaagaagt gatttcttat atacaaaaag cggttttaga aatttctaac
    10081 gctttaaaat ttcccgatac aagctacagt caaaatcaaa attttacagg cgatacccaa
    10141 ctcaaatttg atgttttaag cgatgaaatc atcacaaaaa ctctaagtca atgttcaagt
    10201 attaaagcca tcataagtga agaaaaagac gaaattttaa cgcttaacga gagggcaaat
    10261 tttatcgtag cttatgatcc tttagatggt tctagcttaa tggatgttaa ttttgccata
    10321 ggttctattt ttgctatcta tgaagaaaaa gcaagtgcta aaaatttaag agctgcgctt
    10381 tatagtatgt atggagcgcg attagaactt gtgatttgca aagatcagcc aaaactttat
    10441 cgcttaaatg caaataatga atttattttt ataaaagatc ttaaaatgaa tgaaaaaggc
    10501 aagattaatg ctacaggcgg aacgcaaaaa ttttgggaag aaaaacacgc taaatttatc
    10561 aaaagtcttt ttgatgaagg ctatcgctta agatattctg gagccatggt aagcgatatc
    10621 aatcaaattt tattaaaagg gggtggcatt tttagctatc ctgcaacaca agatgcgcct
    10681 aatggcaaac ttcgtgcctt ttttgaagtc tttcctctag cctttatcat agaaaaagca
    10741 ggcggaaaaa ctacaaatgg aaaaaaccgc tctttacttg aacttgaatt tgataaaatc
    10801 catgcgacaa ctccttgttt ttttggctca gaatatgaaa tttcaaaact tttaaaggct
    10861 tacaatgaat gaagttagag atgaatttga gcaagatatg gataaaaaaa aagaaatttt
    10921 actttcatgt caaaactcaa aaaacctaaa ctcttgttat aattgcgatg aaatttttaa
    10981 ctgccaaact agaaaaaatt atgttgatgc agtctataac agtatgtcta agggtaaaac
    11041 cgaaggcgga tttgactttt aaaggaaaaa aatgcgttat attacaacac caatttatta
    11101 tgtaaatgat gtacctcatt taggtcatgc ttatactacc atcatagccg atactttagc
    11161 aagattttat cgtttgcaag gacatgaaac aagatttcta acaggaacag atgagcatgg
    11221 acaaaaaatc gaagaagctg ccaaactaag aaattccact cctcaagaat acgctgataa
    11281 aatcagtttt gaatttaaaa aattatggga tgaatttgaa atcacctatg atatttacgc
    11341 aagaacaact gatacaaggc atattgaatt tgttaaagct atgtttttaa aaatgtggca
    11401 aaaaggtgat atttataaag atgaatacga aggacactat tgtatttctt gtgaaagctt
    11461 ttttactcaa agtcagctta ttaacgattg ttcttgccca gattgtggca aacaaactag
    11521 aattttaaaa gaagaaagct attttttcaa actttcaaaa tatcaagata aaattttaca
    11581 atggtatgaa gaaaaagatc ccatcttgcc aaaaaacaaa aaaaacgaac ttataaattt
    11641 tgtccaaaac ggccttaaag atctttccat tacaagaaca agttttgatt gggggattaa
    11701 actgcctcaa gaaattaatg atgataaaca tattatttat gtatggcttg atgcactttt
    11761 tatctatgta agctcacttg actttcaaaa caagggagaa aatgctaaat tttggcctgc
    11821 gcatgtgcat ttagtaggaa aagatatctt gcgttttcat gccatttatt ggccagcttt
    11881 tttaatgagc gtggatttgc ctttgccaaa atttataggt gcacatggct ggtggactaa
    11941 agaaggtgaa aaaatgagca aatctaaagg caatgttgta aaacctaaag aagtggttga
    12001 tatctatgga agcgaagctt ttagatattt tttacttaga gaagtgcctt ttggtaacga
    12061 tggggatttt agcgaaaata tgctgataaa tcgtatcaat gcagagctta gcaatgaatt
    12121 tggaaattta cttaatcgca ttataggtat gagtacaaaa tattctcaag gaaatatttc
    12181 aaaagaaggt gttttaaaat ttcacaatgt tgaattaaat caagcaaaag aacacttaaa
    12241 tttagcggta gaatttttag aaaacttaca gtgtaatcgt tatttagaag aactttttaa
    12301 agccttaagt gtagcaaatt tagctattag taaatacgaa ccttggaatt taatcaaaga
    12361 aaacaaacac gaacaagcta acgctttagt tgcactttgt gcaaatattt tagccaaaac
    12421 aagcctttta ttaagcccta ctctaccaaa gtcttgtcaa aaggtggcct tagctttaaa
    12481 ttttgaaatt tcatctacaa attatgcaaa aatgatactt gataataaac ttttagattt
    12541 taaagcaaat ccttgcgaag ctttatttcc aaaagtagaa aaagctcttt taaaacaaga
    12601 aattaaagaa gaacctaaaa aagaagaaag tcctaaaata aaaatcgatg attttgcaaa
    12661 aattgaaatc aaagtcgcta aagtgcttga ttgtcaaaat atagaaggga gtgaaaaact
    12721 tttgaaattt caactcgaac ttgacgataa agaaatccgt caagtactct caggcatagc
    12781 aaaatactat aaagccagtg atttaatcgg taaacaagtt tgcattataa gcaatcttaa
    12841 aaaagctaaa atttttggac atgaaagcga tggtatgata ctttctgcaa aaagcggaga
    12901 taaacttgtt ttaatcaccc ctgaacaact tgtacaaaac ggttctttag tgggttaaaa
    12961 tatgcaaatt agcaatttag gcgaactttt aaacgcgaca ctcattcatg aaggtagcgt
    13021 tttaagcgtg gaaggttttg ccataaattt aaatgaactt aaagcaggct ttgccttctt
    13081 taataacgat aaaaaagaaa ttacccaagc tgtaaaaaaa ggcgcttatg ctataattac
    13141 agaaaatgac attactattg aagataaaga cattttttac tttagagtag aaaatctaga
    13201 acaaactctt gtaagatttt tacgcttttt ttgcgaagat aaagaatgtg aatttttgct
    13261 ttttaaatct tacgaactaa gtctttgtaa ggctttttat tttaacattt taaaaggaaa
    13321 tatttttgct gattttgaaa aactaatcaa agcaaaaaag ggtgaaattt tttgctactg
    13381 tgaagaaaat tacttaaata aactttgtgc ctattctcat agtctaaaag atgctaattt
    13441 taccttatta tcgcgatcta gcttcttttt tacaactttg atttgtgaaa atttatattt
    13501 taaaaatctt aat
//
LOCUS       DAQSLY010000034        13459 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.034, whole genome shotgun sequence.
ACCESSION   DAQSLY010000034 DAQSLY010000000
VERSION     DAQSLY010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13459)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13459)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13459
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.034"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(29..436)
                     /gene="ybeY"
                     /locus_tag="R2H98_000790"
     CDS             complement(29..436)
                     /gene="ybeY"
                     /locus_tag="R2H98_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEE9023686.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            complement(433..1047)
                     /gene="recO"
                     /locus_tag="R2H98_000791"
     CDS             complement(433..1047)
                     /gene="recO"
                     /locus_tag="R2H98_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEE9023687.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCTLGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(1047..1568)
                     /locus_tag="R2H98_000792"
     CDS             complement(1047..1568)
                     /locus_tag="R2H98_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEE9023688.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(1565..2326)
                     /locus_tag="R2H98_000793"
     CDS             complement(1565..2326)
                     /locus_tag="R2H98_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HEE9023689.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNAMQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKFFTSLKTAFANLHTESFWLERTKI"
     gene            complement(2323..3012)
                     /gene="pfs"
                     /locus_tag="R2H98_000794"
     CDS             complement(2323..3012)
                     /gene="pfs"
                     /locus_tag="R2H98_000794"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEE9023690.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(3009..3929)
                     /gene="fabD"
                     /locus_tag="R2H98_000795"
     CDS             complement(3009..3929)
                     /gene="fabD"
                     /locus_tag="R2H98_000795"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEE9023691.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKETGAKRAMLLNMNVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEAIELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            complement(3929..4498)
                     /locus_tag="R2H98_000796"
     CDS             complement(3929..4498)
                     /locus_tag="R2H98_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEE9023692.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(4513..5460)
                     /locus_tag="R2H98_000797"
     CDS             complement(4513..5460)
                     /locus_tag="R2H98_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEE9023693.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSFLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(5464..5961)
                     /gene="pal"
                     /locus_tag="R2H98_000798"
     CDS             complement(5464..5961)
                     /gene="pal"
                     /locus_tag="R2H98_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEE9023694.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(6038..7246)
                     /gene="tolB"
                     /locus_tag="R2H98_000799"
     CDS             complement(6038..7246)
                     /gene="tolB"
                     /locus_tag="R2H98_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEE9023695.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(7256..8035)
                     /locus_tag="R2H98_000800"
     CDS             complement(7256..8035)
                     /locus_tag="R2H98_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEE9023696.1"
                     /translation="MKNYSLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAAKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            complement(8038..8427)
                     /locus_tag="R2H98_000801"
     CDS             complement(8038..8427)
                     /locus_tag="R2H98_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEE9023697.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(8436..8990)
                     /locus_tag="R2H98_000802"
     CDS             complement(8436..8990)
                     /locus_tag="R2H98_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEE9023698.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(8990..9379)
                     /locus_tag="R2H98_000803"
     CDS             complement(8990..9379)
                     /locus_tag="R2H98_000803"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEE9023699.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(9383..10780)
                     /gene="atpD"
                     /locus_tag="R2H98_000804"
     CDS             complement(9383..10780)
                     /gene="atpD"
                     /locus_tag="R2H98_000804"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEE9023700.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(10806..11690)
                     /locus_tag="R2H98_000805"
     CDS             complement(10806..11690)
                     /locus_tag="R2H98_000805"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEE9023701.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(11699..13204)
                     /gene="atpA"
                     /locus_tag="R2H98_000806"
     CDS             complement(11699..13204)
                     /gene="atpA"
                     /locus_tag="R2H98_000806"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEE9023702.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(13218..>13459)
                     /locus_tag="R2H98_000807"
     CDS             complement(13218..>13459)
                     /locus_tag="R2H98_000807"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEE9023703.1"
                     /translation="AFKENIFVGIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKIS
                     QDDSVKIELEELGYELSFSMKALQNKLNEYILKII"
BASE COUNT         4377 a         2573 c         1680 g         4829 t
ORIGIN      
        1 gtcttctagc ccttgaaaaa aatcttactt aatcttccaa agtccttaca atcaaacttt
       61 taggtaaatt aaaatgctct ataagttctt tctctttttc tctcatttct ccattatcat
      121 tttcatgatc aaaacctaac aaatgaagca tagcgtggat aaaaagcaag cttatttctt
      181 cttcatagct atgccctaac tctttagcct tttcttttgc caaatccaca ttgatcacaa
      241 cagaacccaa aggcaaactc tcatcgatat tttcaagtgg aaaagaaagt acatcagtgg
      301 ttttatcttg ttttctttgc tctaagttaa tttcttgcat ttctttacta tccacaaaga
      361 caagctccac atctttagga cttaaaaaac ttgctataga ttctaaaaaa tcacattttt
      421 catcacttaa tatcataaac cttccttaat caaatgatat aaattttcta tttcttcatc
      481 atcaaaaatc gcacaatttt tactactata aaattgtttt agttttttct cttcaaactc
      541 aaatcctaaa gtacattgag aatgcgaagg taaaaaagcc cttagcaatg taatggaatt
      601 ttgaattttc tcatcacagg caaaacaaaa aaaatcttta tgcaatcttc cttcaaattc
      661 caaaattttt aaataagcat caacaataac acgctttgga ttttgttttt caaacctttt
      721 cacacactca tcaagtaaat caaaataaaa actatcaagc tcttctacat cttttaagtg
      781 cctatataaa agacggataa attcttgcca aataagcatt ttatcccttt gcataatcca
      841 taaaaatccc aaatgcaata catctttaag tcttggtaaa aaactaggat tttcttctaa
      901 agcaaagtcg attttatagc cgcttaaaat actagaatgt ctaagtccat aaaaacgata
      961 agccttaata agcattttag gacttaaaat ataaacaatc aaatcctcat ctttaacttt
     1021 ttgagtatga agtataaagc cttgcattaa acaatttcaa taccataagc cctaagtata
     1081 tcaaaagcgg atttttctaa attttcatca aaacttgcac ttaaattttg gtgtaaaatt
     1141 atccttgcat taggcttagc accaaaagct aaaataatat tacaaaacac acaaatatga
     1201 gaaacaagcc ctgcaaaatg aagttcttca taatcacttt tttgtatgaa attagctaat
     1261 tctaagctac caaaagtatt tttataaaaa attttatgag ctttttgtaa aaaaggttca
     1321 aattcctttg gcatttgcca acccaaactc tctttaatgc aatgttttac aggtaaattt
     1381 aaaccttctt tgctttgtag ataatgttca tcatgcgtat cataggttaa aagcaaatgc
     1441 gtgttattaa aatcgatttg atttaaggct ttaagaatat tttctttgat ttttaaagcc
     1501 ttatcaaaac ctaaacttcc atcaataaaa tcattttgat aatccactag aacaaaagct
     1561 tttttcatat ttttgtcctt tctagccaaa aactttctgt gtgtaaattt gcaaaagcag
     1621 tttttaagct tgtaaaaaac ttaggatgat ctttttctaa atttgctaaa agctgtttag
     1681 cttcttctct agcgtgtgga aattttacat ttttttcgct gagtttcata ccaggacaaa
     1741 attcatttcc tatcacgcta agttcatttt gcatagcatt atccctaagc tgtctttctc
     1801 gcacaaaaat caaagggcgt atcacagtta taccgcgttt gctttgataa ataggcgcta
     1861 aggttcttaa agctccatta tgaataaaat tcataaaaaa gctttctgct gcatcatcta
     1921 aatgatgggc tatagcaagc ttgttaaaac ctttttcaag agcgtaagta tataaagctc
     1981 cacgacgcat tctcgaaaaa taactacaaa aacttgaatt ttctcttatg gtatcgcctg
     2041 aaacttcata aatatttgaa tcaagcacac tatgtttaat gccgtgttct tcacaatgtg
     2101 catgaagatg agaataatcc tcgcccatac cataactcaa agttaccgct tcaagttcaa
     2161 atttaaaagg agcgtgagct tgcatacgat ttaaaagatg ggctaaagcc aaagaatctt
     2221 tcccgccact aagccctaaa agaaccctat ctccatcttt aataagtcca aatttagcat
     2281 tagcttgtgc aacttggcgt atgagttttt tgctaagatt tatcataatt tctcgcacat
     2341 tttaagcaca aaattggctg aaattttagc tgaattgatc acaaactcat caaaatcaaa
     2401 ttcagccttt tcccctgctt tatcactcat agctcttaag ataaaacaag gcacctttaa
     2461 agcatcacaa accaaagcca cacttgcgcc ttccatttca caagcatccg cattgaaaat
     2521 ttctctaatt tttgcttttt ttgcttcatc gcaaataaac tcatcacccg ttgcaataat
     2581 acctgcacgc agtttgatat ttaattcctt agcaacttct aaagcaagat tgtttaattt
     2641 ctcatcggtt ttgataaaaa tttcattacc tggaacaaaa cccaaaggat gtccaaaagc
     2701 agtaatatca agatcgtatt gagctaattt tgttgcataa agcaaatcgc caatttcaag
     2761 ttcaggatta aaagcacctg caactcctgt aaaaagcaaa gcttgtgcgc caaatttttc
     2821 tatcatcaca ctagcactaa gagtagaatt taccttgcca attttagaat acgctaaaac
     2881 aagttcatgg tttttatact ttgcaaaata ataagtattg ttagcgtgtt ctattttcgt
     2941 ataatcttta agtgtttcaa gtaaaggagt gatttcttca ctcatggctc ctaaaattgc
     3001 tattttcatc atacaacctt taaaaattca tcaatatcat tcatatttgt taaagcataa
     3061 gtttcttttg aagtgatttt tttattcaaa cccttaagca cacttgcgcc aaattctatg
     3121 aaataatcta cttcattttc acatgcctta atgctttgtt tataaagcac aggagagata
     3181 agttgcgctt ttaaaagctc aatggcttct tctttgcttg tataaatttt ggcatttgca
     3241 ttagaaatta cggctttaaa atttggtttt aacacctttt caagctccac acaaagctta
     3301 gctgaagcat tttccaaaag aggacaatga cttgccacgt tcatatttaa aagcatagct
     3361 cttttagctc ctgtttcttt aaatacactt tcataacttg ctaaatcagg ttttaaacct
     3421 gctacaacga tttgtccatc gcagttataa tttgcagcga aaatttgctt gttttctttt
     3481 tgtgcttttt gacaaagctc ttcaaccttt tcatcatcaa gccccaaaac caccatcata
     3541 cctgcttcaa cttttgcaca atcttcttgc atgaaaagcc ctcttttatt gaccaaagaa
     3601 agagcctcta aaaaatcaaa agcaccattg acagctaagg ctgaaaattc tcccaaagaa
     3661 tgccctaaag caaatttcga acttaaatca ggtttttttt caagtaaaac actataagcc
     3721 attaaggaat ttaaaacgat ggcaggttga gtaaattcac tttgattgag tttttcgttt
     3781 tcttcaaaaa gcaaatgttt aaaatcaatc ttacaaaaat cacttgcgtt ttgaaggagt
     3841 tctttggctt ttatagagtt ttcataaaaa tcttttccca tgccaagact ttgagagcct
     3901 tgacctggaa atataaacgc agcattcatt aatgacaacc gcaaccgccg ccaccacagc
     3961 aaccgccgcc accatgtccg tgtccgtgat gatgatcgtg cccatgtccg cttccacaac
     4021 cacaactatg acttcctgcg ataatacctg taagaatttc atcttcactt gcagctctag
     4081 catctacgat atttaaagaa aaaagcaaat cacgacctgc ataagggtga ttataatcaa
     4141 ttgtcacatc attttcacca atttctttta cagttacacg aacggtttcg ccattttcac
     4201 cttcgccaaa aagttccata cctactttta aatcaatacc tgcaaattgc tcttttggta
     4261 aagtttgaac cgcattttca tcgtattcgc ctaaaccttt ttctttttta attaccacat
     4321 cagcattgct agggcaatca agcttcatca cttcttcttc taagctttct aaaatctgac
     4381 ctttgcctaa aataaaagaa ataggttgag aatataaatt tgattctaaa acttcatttg
     4441 tatttgcatc ttttaactca taaaacattg aaactacact atttttttct atagccattt
     4501 tatctcctta atttattttc tattaggtga agcttttgct tcgggtgaat ttggataatt
     4561 agtttttaaa gctttataaa aaccatttgc tgtttttgta tcacctgttt tatccaatga
     4621 aatggcagta tgatataaaa gttttgggaa ataatctcct tttgtactca aagaagaact
     4681 ttttttataa taaacaatag cattgttata atttttttgt ttatactcga tctcccctaa
     4741 ccaaaaattt gctcttgcag gtttatactg ctttgttatg agaaaattta attttgcttt
     4801 ggaatcttca aaagcatttt tatcaacatc ttttatcgct aattctaaaa tttcattatt
     4861 ttttttcttt ttccaagatt catcaatttg ttttgcttta tcatcttggg tattttgagt
     4921 attattgttt tcaatggtac tatttgaatc tgtagttgaa acaacaacac taggtgtaat
     4981 agttttaacg cttaaatttg catcatttaa ttcgttttta gaaacataat ttgcattaat
     5041 agcatctact aaaaaactaa gttcggctaa aacttttttt acttgcttat tattagcttc
     5101 ttgaattttt ctactttctt caacataagc ctttaatttt tgaatttcac tagtaaaatt
     5161 attttcaata ttttgattat tctcttcaac ttgacttaat ctagaatttg atttggcata
     5221 ttgagaattt ataccttcta aagtgctttg taaaccctcg attctttcgt taatttcatt
     5281 aattctagca tttgtttgta tattttcatt atttaaatta tctaactttt ctttaaataa
     5341 tttttcattt gaagttaaac cataagaaga attgcttgtt atatctcctg caccaaaagc
     5401 tgagctttct gcataaagta aagtagctcc aagaagagct actgtgaata tttttttcat
     5461 taattatctt gataatttaa attcagcacg tctgttttgc gcatcgcaag ctttagtttt
     5521 ttcagtacac acaggatttg tttctccata gcttttaaca gcaattctat cagcatttac
     5581 acctttagcg attaaagctt cttttacagc ttttgctctt tttaaaccta gagcttggtt
     5641 atattcatcg gttccccact catcgcagtt tccttcaaca gtaatactta caccgcttac
     5701 ttcagtgtta aaaatattag catttgtgct tacaacattt tgcatatcag gacgaatgtt
     5761 gaatttatca aaatcaaaat atactttatt taaagtatca ttaagttgag aaatttttga
     5821 atcaatatcc caaccatcac ttccacctga accacgattt gaatcaacac tactatcacc
     5881 gcttacgcta gtgctttttg tgctacaacc actaataaca actgcaagag ctgcgattga
     5941 agtaaaaaga atttttttca tttatgacct ttcaaagtta ataaattctt attattatat
     6001 ctaattttta attaattttg acctaaaatt gaaattttta ccaatcaatt gattgaattt
     6061 ttccaaccct aagaggaaaa taaaaagtct tatttgcatt tacacgaata acacccaaag
     6121 cactttgcgc acctaaatat ttgataaata ctatacttcc accatcacta gaaaatcttg
     6181 gaaataaatt ttttccattt gctgtaagtt gacgaatata atcactatta attgacatca
     6241 aataaatatt aaaaacacct gcttgatttg gttcacgact tgaataaacc aaaaaatctt
     6301 tataagtcga aacagccgaa ttgtttctac catgaaaaac aacttgttca gcactattgc
     6361 tatttaaatc ttgcataaaa atattaggat atcctaaacg atcgcttaca aataccactt
     6421 tactatcatc tgagccaata aaatttccat taacatcaat accagaataa ttagttaatt
     6481 gtgttagatt tttggtattt aagtcatata aataaacatc aggctgatct tttggagcca
     6541 tggtaacaag tagtttactt ccatctacac tcacatcact tgctacaacc ataccgccac
     6601 ttgataaaat tttactagct ttattggtat ttaaatcata acggtataaa gttggcttat
     6661 catgatcata agctgtataa taaaatagag tttgttcttt atttccccat tttggaaata
     6721 aattaagccc accatcaaca ataacttttt gataagttaa agtataatca gccataataa
     6781 tttgactttt tttagagcta gaatttctcg cgatcaaaat tttatgatcc atccaatcaa
     6841 caggtgcaag tcctaacgca tttacagaag ctttgacgct tttatgtgcc aaaaatggat
     6901 attgctctaa accatttaaa gtataagttt gctctgactt atcagaaccg ccagctttta
     6961 tttttacatt taaactcaaa gtgttaccat ttttatttaa agtgtattca aaagtataat
     7021 tacttgtctc agttgcatta gcaacaactt caaagtttga acttactttc aaatcgttca
     7081 caatgatatt ataaaagctt ttctttaaat tctcatcact taaatttgaa ttgtctttaa
     7141 caataatctt tggtaaaact acaccagaat taacaacatc aatcactgga tcttctgccc
     7201 aaagacttcc taaaaagact aaaaaaattg ctacaatttt tttcattttt ttctcctaat
     7261 catttttaac ttttacttca tctcttaaat tcatggtaat gcttatattt ttattttgcg
     7321 gaggataagt aataaattta cctttttgac tttctaaaaa ttcagccact ttagcatcat
     7381 ataaaggatt cccacttttt tcaactgaag tatagccaaa ttttccattt tcatcaataa
     7441 aaatttttac cttaacagaa attttttcac tatttggata atactgagtc catctttgag
     7501 tgataatacg cacaactttc cctaaaaatt catcataaat tccaatcttt tgcgcctttg
     7561 tgctttcgcc ttgcgttgaa ctttcttctt gaagtaaact atcattaagt tgttttacaa
     7621 gttcagaagc ttgaggtttt gcggcactag aagctcctga tttagcactt gattgaattt
     7681 ttgtagtctt ttcttcttgt atttctttaa tatttccaaa aagctcatta aaattacttg
     7741 ccttttggtc aatatcttca gttttaactg ttttatttgt agtctgagca aaaagctttt
     7801 ctatatcaat ttgctctgtt ggtttttgta tttctttagg agtgttgctt tgagtaataa
     7861 cttgttttga tggttcagca agttcaatat ctacaaaact atcttttata tcagtatatt
     7921 gtatagcagg ttcaacctcg cttacaagtc taaaaaaaac aagaattact atactaatat
     7981 atattgctaa agcaagtaaa aacgaattta aattactcaa actataattt ttcatgatta
     8041 ttcagtctgt aaagcaactt tattaaatcc taaatttttt acacttctta agactgaaat
     8101 aacatcgtca tattttaagc ttttatcagc gcgtataaaa accggatctt cggtattaaa
     8161 ttgtgctttt ctttgagcaa gattgtcagc aaaacttata aaatcgtatt tttcttgatt
     8221 taaaaaaatt tctttttttg cattaatact aataattaaa ctcttaacag ttggagtgct
     8281 ggtatttttt tgactacctt gtggaagatt aattttttct tcataagtaa tgcttggagc
     8341 tgttaccatt aaaatcgcaa gcaatacaag cataatatct actaaaggtg tgatattaag
     8401 ttcaggtttt tcatcatcaa atggcatttt taaccttatt tactcgaact tataacttta
     8461 atctcgctat caataatgct taaaagttca aaagcttttc ttttaatgat gagatgaaat
     8521 gtataagcag gaattgctac taaaatacca caacctgtag caactaaagc ctcgctgatt
     8581 ttaggagcta tgatacttaa agaattttga gttccaagcc caccaaaagt ttcaagtata
     8641 gaaataactg tcccaaaaag acctataaaa ggtgaagttg aagcaataat actaagccaa
     8701 gtaagtccag cagaagcgcg gcgacttgct aaatttttat agatttctaa atgatttgaa
     8761 gttgtatcat tgcactttct taaaatcgaa tcagtacgac ttaaatcctt ctcacccaag
     8821 agcaaagttt ctaaactttc tttttcctta tttctccatg tagccaaata agtcaatcta
     8881 gcaaacaaaa tactaaatgc taaaataaaa tataaagaaa gccataataa aactatataa
     8941 gtaataatac ttgaactatt gaaaaaatga aatatagctt caaaattcat taatgcatcc
     9001 ttgcattatc aagttttgaa aaagttgctg ctaaagctgc attatcagaa ctcatagatt
     9061 taatcaaatc ttttgcttga gcaagatttt tttcaatctc actttcatca cttccacaaa
     9121 cccaaaccgc accctttgct aacacgcaaa tcttatcttc atctaccttt gcatgtccag
     9181 catcaatagc aattaattca tggtttaaat cagctttttc aatatcaatt actccagatt
     9241 ttaaagaaga aaccaaagca gcatgtcctt taagcacgcc aaattctcct tcactacccg
     9301 gtaaagtaac agattttact tctccttgat agattacacc caaaggcgta actatctcga
     9361 aattaatcaa atcgttcata aattaacctt ttaatttatc cgcttttgca atagcttcat
     9421 ctatatttcc aaccatatag aaagcatttt ctggtaaatg atcatattta ccttctaaaa
     9481 ttcccttaaa tcctgctatt gtatcttcaa ggcttatata ttttcctggg ctacctgtga
     9541 aaacttctgc aacgaaaaat ggttgtgata agaatttttc aatctttctt gctctttcaa
     9601 ctacaagttt atcctcttcg ctaagctcat ccatacctaa aatggcgatg atatcttgta
     9661 aatctttgta tttttgaagc actgattgaa caccacgagc aactttataa tgttcttctc
     9721 caatgatatt tgggtcaagc attcttgaag ttgagtcaag tgggtcaact gcaggataaa
     9781 tacccttttc agcaatagct ctatttaaaa ccgttgtagc atctaagtga gcaaaaacag
     9841 ttgctggagc tgggtctgtt aagtcatcag ctggaacgta aacagcttga actgaagtga
     9901 ttgagccttt tttagttgaa gtaattcttt cttggaattt acccatttca cttgctaagg
     9961 ttggttgata acccacagct gatggaattc ttcctaaaag tgctgacatt tcagaacctg
    10021 attgtgaaaa tctaaagata ttatcaataa acataagcac atcaagaccc atttcatctc
    10081 taaaatactc agccattgtt aaacctgtta aagcaatacg atttcttgcc cctggtggtt
    10141 cattcatttg tccataacat agagcaactt tgtctaaaac attactttct ttcatttcat
    10201 tataaaggtc atttccttca cgagttctct cacccacacc tgcaaataca gaatagccgc
    10261 tatgcttaaa tgcaacattg tgaataagct ccataataat aacagtttta ccaacacctg
    10321 caccaccaaa aagacctact ttaccacctt ttgcataagg agcaagtaaa tctacaactt
    10381 taatccctgt ttcaaaaatc tcactttttg tgctttgatc ttcaaaagct ggtggatctc
    10441 tatgaattgc ccatttttta tcaaaagaaa tttcttcacc ttcatcgatc aaatctccag
    10501 taacattgaa aattcttcct aaaactttct caccaacagg aacactaata ggagcaccta
    10561 aagcctcagc ttttaagccc cttaccaaac catctgtcat atccatagca atagttctaa
    10621 ctctattatc tcctaaatga gctgctactt ctaaaacaag tttatgtttt tttccttcgc
    10681 tttcaaaatt tacaacaatt gcttcattaa tttgaggtaa atagtcgtta aaatctacat
    10741 caacaaccgg acctaatacc tgtgaaataa atccttgcat tatttatctt ctccttaaaa
    10801 ttttactatt tcattgattc aacaccactg ataatctcta taagctcagt agtaatggat
    10861 tcttgtcttg ctttgttata agctaaattt agttgtttca ctcttgcctt tgcgttatta
    10921 gttgcattat ccatagcttg cattcttgcg ctatgctctg ccgccaaaga atcgattaac
    10981 gcataataca tattatactc aaaatacgtt ttcattaaat cttctaaaag ctcagttcct
    11041 tccggttcaa gctctaaaag agaattatga gtctgttcaa tactctttgg ctcaactgga
    11101 ataagatgat taattttaag ttcttgggta atcatatttt tataaccatt atgaactaaa
    11161 atcacttcat ctgtatttcc atttaaaaaa tcatctacag cagcatgaat tacttcacat
    11221 gctttctcat aatcaggact agaactaaga tggaaatatt tctctaacaa ttctattttt
    11281 tgaaaattaa aatattcaat cccagtttta cctatagctc taagacgaat attaatattt
    11341 tttgcttcat attcttttag catttcactt actgttttta aagtcttaat attaaaacca
    11401 ccgcataagc ctttatctgc agtgataaat attaaatcta cggttttaat ttgttctttt
    11461 ttatgaaaca aagataaacg cacatcatct tcattgtgaa caattttatt gatctgaaat
    11521 gaaatttcac tcaaaatttc atcgattttt tgtgcataaa tttttgatct tttagctgct
    11581 tcttctgctt tttttaactt agcagtagaa actagcttca tagcatttgt agtcttttga
    11641 gtgttatgaa cacttttaat ttttctttta atttctttta aattagacat aaaagacctt
    11701 ataaatgatt tgctttaaac tcattaatgg ctttagctag tttttcttcc aaatcagaat
    11761 ctaaagcttt tttagagcga atttgctcaa aaatatctgg atgttttgcc tcaataaaag
    11821 gataaattcc atcttcaaat tccttaattc tagaaacagc aatatcatct aagaaacctt
    11881 tggttcctgc aaaaattaaa actacttgtt tttcaacgct aagcggagaa taaggtggtt
    11941 gttttaagag ttcaaccatt ctttgtccac gttcaagttg ttttctactt gcctcatcta
    12001 aatcactagc aaattgtgca aaagcttgaa gctctctata ttgagcaagg tcaagtctta
    12061 atgtgcctga aacttgtttt gtagctttaa tttgagcagc cccacctaca cgagatactg
    12121 ataaaccaac attaattgca ggacgaattc ctgagttaaa taaatcagtt tctaagaaaa
    12181 tttgtccatc tgtaattgaa ataacattag ttggaatata agcagaaaca tctcctgctt
    12241 gtgtttcaat tatcggcaat gccgtcaaag aaccagcacc taattcatca tttagcttgc
    12301 ttgctctttc aagcaatctt gaatgaaggt aaaaaacatc gcctggataa gcttcacgac
    12361 ctggaggacg acgtaaaatc aaagacattt cgcgataagc tacagcatgc ttgctcaaat
    12421 catcataaac aattaaagca tgttttgcgt tgtctctaaa aaattcaccc atggttacac
    12481 cagtatatgg agctaagtac tgtaaagccg caggatctga agcaccggca tttacaacaa
    12541 tagtatattc catagcacca tgttcttcta gtcttttaac cacttgtgcc actgtacttt
    12601 gcttttgacc aattgcaaca tatatacaga taactccttg acctctttga gatataatgg
    12661 tatcaacagc aacagtagtt ttacctgttt gtctatcacc tatgataagc tctctttgac
    12721 cacgaccaat tggcacaagc gcatcaatag ctttaattcc tgtatgtaaa ggctcatgaa
    12781 cactttttct cgccataata ccttttgctt tttcttcaac aaaacgatat tcattagcat
    12841 tgatcacacc tttagcatca attggctcac ctaaagcatt tacaacacgg ccaatcaaag
    12901 cctcacctac tggaacttta agtaatttct taagtctttt tacagaagca ccttctttta
    12961 aaccttctcc ttttccaagt ataacaatac ctacactcga ctcttcaagg tttaaggcca
    13021 ttcctttatc accattttca aattctacca tttctccagc cataatattc ttaagtccat
    13081 ataccttagc aacaccatca gctacagaaa taatctttcc tgtttcttca atttcaagat
    13141 ttaaatcaaa attttcaatt ctttctttga ttattgaact gatctcatca gctttaaatt
    13201 tcatttactt tttctcctta gataattttc aatatatatt cgtttagctt attttgaaga
    13261 gctttcatag aaaaagaaag ttcataacct aattcttcta attctatttt aacactatca
    13321 tcttgactga ttttattatt tagtttaata tttgcatcaa attttttgtt aagtttgact
    13381 tcaagatctt taagattttc ttgacttaat ttttctttag aatatacaat accaacaaaa
    13441 atattttctt taaaagctt
//
LOCUS       DAQSLY010000035        13417 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.035, whole genome shotgun sequence.
ACCESSION   DAQSLY010000035 DAQSLY010000000
VERSION     DAQSLY010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13417
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.035"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..509
                     /gene="lnt"
                     /locus_tag="R2H98_000808"
     CDS             <1..509
                     /gene="lnt"
                     /locus_tag="R2H98_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEE9023704.1"
                     /translation="ELSYKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFG
                     EEIPFFKDLTKKYFLKNIEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIII
                     ALSNNAWFNNSSEYKLQQLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLS
                     KEIFNDKK"
     gene            complement(746..1942)
                     /locus_tag="R2H98_000809"
     CDS             complement(746..1942)
                     /locus_tag="R2H98_000809"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEE9023705.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            2082..3305
                     /gene="sstT"
                     /locus_tag="R2H98_000810"
     CDS             2082..3305
                     /gene="sstT"
                     /locus_tag="R2H98_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEE9023706.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            3315..4202
                     /locus_tag="R2H98_000811"
     CDS             3315..4202
                     /locus_tag="R2H98_000811"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEE9023707.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGSVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            4206..5927
                     /locus_tag="R2H98_000812"
     CDS             4206..5927
                     /locus_tag="R2H98_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEE9023708.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNTN
                     EFLQALKDYENLNQALGKIMTYVYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELTPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEVLSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDKNFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5921..6358
                     /locus_tag="R2H98_000813"
     CDS             5921..6358
                     /locus_tag="R2H98_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023709.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            6355..8430
                     /locus_tag="R2H98_000814"
     CDS             6355..8430
                     /locus_tag="R2H98_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEE9023710.1"
                     /translation="MNLFEELNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            8427..9245
                     /gene="truB"
                     /locus_tag="R2H98_000815"
     CDS             8427..9245
                     /gene="truB"
                     /locus_tag="R2H98_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEE9023711.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            9239..9466
                     /gene="csrA"
                     /locus_tag="R2H98_000816"
     CDS             9239..9466
                     /gene="csrA"
                     /locus_tag="R2H98_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEE9023712.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            9463..10230
                     /locus_tag="R2H98_000817"
     CDS             9463..10230
                     /locus_tag="R2H98_000817"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEE9023713.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            10227..10679
                     /gene="smpB"
                     /locus_tag="R2H98_000818"
     CDS             10227..10679
                     /gene="smpB"
                     /locus_tag="R2H98_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEE9023714.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEAKAAMKNYK"
     gene            10690..11292
                     /locus_tag="R2H98_000819"
     CDS             10690..11292
                     /locus_tag="R2H98_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEE9023715.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNDSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            11292..11582
                     /locus_tag="R2H98_000820"
     CDS             11292..11582
                     /locus_tag="R2H98_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEE9023716.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            11579..>13417
                     /locus_tag="R2H98_000821"
     CDS             11579..>13417
                     /locus_tag="R2H98_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9023717.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILNELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNAN
                     LKDLENVLAKMTHHHKIFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHTISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKI"
BASE COUNT         5083 a         1967 c         2033 g         4334 t
ORIGIN      
        1 aagaattatc ttataaaatc accattatta caggagcatt tcatgttgaa aaagagcata
       61 cttacaatag cacttatatc tttaaaaaag gcaatgtcta tattttaaat aagcattttt
      121 tagttccctt tggtgaagaa attccatttt ttaaagactt aacaaaaaaa tattttctca
      181 aaaatattga agaattttcc aaaggtccta tacaaagcaa atataaatta gataatcaaa
      241 ttatcacaaa tgcaatttgt tatgaagcta ccaaagaaca aaactatcaa aattcacaaa
      301 ttattatagc cctaagcaac aatgcttggt ttaataatag tagcgaatac aaactccagc
      361 aactcttaat gaaattttat gcaagtaaat atggggttag tgtttatcat gctacaaatg
      421 gcaaagagaa tatagttata ctccctaaaa agcttttaag caaagattgg aaaaatttat
      481 ccaaagaaat atttaatgat aaaaaataat attaaaattt taattttaaa gtaatttaag
      541 ttattttata ttataattct gtcaaacaat attttgactt agaggggttt ttaccccaaa
      601 gctaaattaa tttagcttcc ttcctaactt ttatatttat gagggatatt gaaaaatatc
      661 cctctaagtc aaaaattaat ataactttat taattcttta taattataca agccttgttt
      721 aagcttgtat aatattgtta attttttaaa gtagcttttt aaactgttct agagcatcaa
      781 gtttttccca aggatagtcc ttttgtccta cttgcccacg agctgctaca tccgcataaa
      841 gaaaagtttc tttacttggt ttatccagat gaaatttatc acggatccaa tttggcgtta
      901 aagaaaaatt ttgcattaca aaatcactta aaacatcgtc atttacactg gtatttgtgc
      961 ccatacaatc cacgcttacc gaagtaggtt ttgcaacacc tatagcataa ctaagttgaa
     1021 ctatacattt tttagcaagc cctgctgcaa ctatgttttt agctaaccat ctacctgcat
     1081 aaagtccact tctatcaact ttagtataat ctttgctcga ttgcgcacca ccacctattg
     1141 gagaataacc tccaaaacta tctactataa gttttcttcc tgttaaacca ctatcatgta
     1201 aagaagaatg attaacatat ttaccagttg gattgattaa aattctagtc ttattaggat
     1261 caaaaagttc ttttggtaaa ttactatcta agataagttt catcactaaa gatcttaaat
     1321 cttctatttt catactttca acacaaggtg cagaaactac tatagtatga atactttgcg
     1381 gtttgcaatt ttcaaaattc gccttagtgc cataatctat agtcacttga gttttaatat
     1441 ccactccaag ttcatgtgga tttgcttttg cataagcata aactctatca catagcattc
     1501 ttgcataact aatagctgct ggcatatatt cctcagcttc acaacttgca aaaccaaaca
     1561 taatgccttg atcacctgct cctgtttcgc catcttcttg atcgacacct tggttgatat
     1621 cagggctttg ttcatttaaa aacaccataa catcaacctc atcaggatgt aaacactgct
     1681 ctttgctaaa atggcctgct ccgtcataac caatgttttt taaaacatct ttaactaaat
     1741 tatcgtaatc agctttacta agtttgtgat ttgacttaac ttcgcctcct atcacaacct
     1801 tatttcctgc gacaaaaacc tcactcgcca cccttgaatt tttgtcattt ttcaagagta
     1861 tatccactat cgtatcagcg attatatcag cgcacttgtc tggatgacct gcacttacga
     1921 cttctgaagt gaatagatac ataaaaagtc ctttcattta aaataaacca caattgtatc
     1981 caaataaact tatcaaagct tgataaatta aaaattctct aaaattaagc aaaagttagt
     2041 taaaatcaac ttttgatata aaaaatattt aaaaggtttt tatgttttct aaaatcattc
     2101 aaagctacgc taaaggcaac ctcatagttc aaatttgcat aggtatagca ctaggaatac
     2161 ttataggcat tagctctaaa gaaatatctg aaattgcaaa tttacttgga atacttttta
     2221 caagtgcctt aaaagctatc gctcctatgc ttgtttttat tttaatttta acctcaattt
     2281 gcactaaaga tttttctcaa agtggtgcta agatcaaaaa tattatcatt ttatatatag
     2341 taggcacctt ttttgcttca gcttgtgcag ttcttgctaa ttttttcttc cctgtaaagc
     2401 ttgttttaga tggagttcaa actgctacaa actcatctcc aacccacatg agtgatattt
     2461 tcaaagatct tttatttaaa attgtcgata atcccataaa tgctctttca agcggaaatt
     2521 atttaggaat tttaacttgg gcaatagctg gaggtatagc attaaaacac tgttctaacg
     2581 aagcaaaaca agtttttata gatatcaatg aaggggtttt aaaaatcgtt aaatttgtag
     2641 taaaacttgc cccttttgga atttttggac ttgtggctaa ttctgtagca caaacaggag
     2701 cacaaggttt gctaagttat gtaaaacttt taattttact tgtagctact atgctttttg
     2761 ttacttttgt tatcaatgcc ttaatagtct ttttttatac aagaaaaaat ccttttcctt
     2821 taatttttat ctgcttaagg cacagtgcat tttttgcctt ttttacaaga agttcagcgg
     2881 caaatattcc tgtaaatatg gcactttgcg ctaaacttgg catagataaa gaattttatg
     2941 gcatttctat acctttagga gctactatca acatggcagg agcagcagtt actatagcta
     3001 ttttaagtct tactgcagcc aataccgttg gtatagaaat cagtctttta caagcctttt
     3061 tattaagcat tattgccacc tttgcagctt gtggggctag cggagttgcg ggcggatctt
     3121 tactgcttat acctttggct tgttctttat ttaatataga ctatgatatt gctatgaagg
     3181 tagttgccat aggttttatt ataggggtta ttcaagatag tgttgaaact gctttaaata
     3241 gttctacaga tgttcttttt acagcaattt gttctaaaaa tgaattaaat tacaatatca
     3301 aataaggtaa aaacatgcgt catctcatca ctacaaagga ttttaataaa gtcgaaatta
     3361 tggagctttt taaagaagca agtgatttct tagatgaaaa acctaggact tttcttgaag
     3421 gaaaaagcat cacgacaatt ttttttgaaa actctacacg caccctttca tcttttgaaa
     3481 gcgctgcaag aagattaggt gctagggttt tacgccttga tgtttcaaga tcaagctcta
     3541 gcaaaggaga aactctttat gatactgctg ctaatttaga tgccatgagt cctaatgcta
     3601 ttgttgtaag acacgcaaac tcaggagttc ctttgatatt agcaaagcat atgcattgtc
     3661 ctgttgttaa tggaggagat ggaaaacacg cccatcctac ccaagcttta ctcgatttgt
     3721 ttacgattta taatcatttt caaggtagtg ttgaaggtaa aaaaatttgc atcgtaggtg
     3781 atattaaaaa ttcccgcgtt gcagcgtcca atatagaact tttaagtaga tttaatcttg
     3841 atattaccct agtagctcca ccgcatttta tgcctaatac ccatcttaaa aaacattata
     3901 aacttgatga aaatattata gcaaattcag atatcatcat gagtcttaga acacaaacag
     3961 aaagacataa taaaaccgtt tatgcttcac ttaaagacta tgcaaatgat ttttgcattc
     4021 aaaaaagctt agtaaaggat aaaaagctta ttttactaca tccaggccct gttaatcgca
     4081 atattgacat aagcgatgaa atgatgagcg atgaaaggac tttagtttta aaacaagtta
     4141 aaaatggagt ggctattaga atggctgttc ttaaaaaact catactagaa aatgaaggat
     4201 aaaaaatgtt agaatgggat ttaagtgctt tatttcacga taaagaagca ttgcaaaatt
     4261 ttacacaaga tcaaatccaa caaagtttaa atttcaaaaa aaactatgaa aataaacttt
     4321 atacattaaa tactaatgag tttttgcaag ctttaaaaga ttatgaaaat ttaaatcaag
     4381 ctcttggtaa aatcatgact tatgtttatt tgctttttgc taaaaacact caaaatggtt
     4441 ctttttacgc acaatacgaa gaagagtgca aaaaaataga agaaaattta ctctttttcg
     4501 agcttgaatt ttgtgagtta actcctgaaa aaagtcaaga atttacaact ttttgcaaag
     4561 attatgattt ttatctttct aatttattgc aaaacaaacg ctataatctt agcaaaaacg
     4621 aagaacgcat tatgctttat ctttccaata caggtgcaaa tgcttttagt agactttttg
     4681 atgaaagtat gagcgcttta aaaatccctt ttgaaggtaa aaaacttagc gaagaagaag
     4741 ttctaagcaa aatgtatgat gaagatagaa aaatacgcaa aaaagctgct aaaaaattca
     4801 gtaaagtttt gcaaaaaaat agcagacttt taagttttat tattaatatg ataaaaacag
     4861 aaagaaaaaa cataagctta ttaagaggtt atgaaaatgc tgaaatttca agacatatca
     4921 gcaatcaaat ttcacaaaaa agcgttgatt ctttgatagc aagtgcgcaa aaacatttta
     4981 acttagtatc gcaattttac aaaagaaaaa aacaaatttt aggctatgat gagcttaaag
     5041 actatgacag atatgcaccc ataggaaaag aagcaagttt tgattttaaa acaagtaaaa
     5101 atattgtttt agaggcattt caagcttttt ctcctcaatt ttatgatata gcaaaaaatg
     5161 cttttgatca aggttggatt gatgtttatc cgcaagaaaa taaacaaggg ggtgcttttt
     5221 cgcattctgc aacttctgat gcacatcctt ttgttttatt aaactacacc aataaaagac
     5281 gcgatctttt tacacttgca catgaattag gacacactat ccatcaaaaa ctttcttata
     5341 atgtaagcta tttaaatcaa aatacacctt taaccaccgc agaaacagct tcagtttttg
     5401 ctgaaatgct cgtatttgat tttattaaag ataagttaaa aaaagaagaa ctcttatctt
     5461 tatatgcaaa taaaatcgaa gatatttttg caacttttta tagacaaatt aattttactt
     5521 gttttgaaag acgcttacat gctcaagaaa atgaacttag tactgaagaa atcaataaaa
     5581 tttggatgga agaatctcaa aagatgtttc aagacagcgt aaaacttaca aaaaattatg
     5641 cttcttggtg gagttatatt cctcatttta tccattctcc tttttactgc tatgcttatg
     5701 cttatgcaca acttttagtt ttagctcttt atggacttta caaaagtaaa aaatgtgaaa
     5761 attttaaaga actttatatc aaaatgcttt ctttaggtgg aagcgtgagt ccaaaagaac
     5821 tagtaggaat gtttggattt gatatagaag ataaaaattt ttgggaaata ggcataaaag
     5881 aaattcaaaa actcatcaat gaattcatgg agttacaatc atgctagaaa caatcttaaa
     5941 aaatgaaaat tttatccata ccatgcaaaa gcattgttat gaagttattt cacaccttat
     6001 agaagaaaat atagaatttt ccatagttgc aaatacaaat ttcatagatt ttaaccctga
     6061 acttcccaaa gagcttgata ttaaacaaaa tccttatgct ctttttgctc ttggaggata
     6121 cacctttgaa tccatacaac taaataaaga tttcattcaa tttcacgcag gttttggaaa
     6181 tgatgatttt gatagttttg taaaggttga tttaggagct atcacgcaaa ttcaagtaga
     6241 aaatagcatt ttattcgtta attttagtct ttataaacgt gaagatagca aaaatttaca
     6301 aaaatctaaa aatatatttt taaataatcc aaaaaataaa gatattttca aaaaatgaat
     6361 ctatttgaag agttaaatga tagtcaaaaa caagcggtaa gccacattga tggagccatg
     6421 cttatcctag caggcgcagg tagtggaaaa accaaaacta tcaccactcg tcttgcttat
     6481 cttatcggtg aagtaggcat cccctcacat aacactctta ctcttacttt tacaaataaa
     6541 gcagctagtg ttatgcgtca tagagcatta aattttctac aaggcaatca caatcctttg
     6601 ctttgcacct ttcataaatt tggactttta tttttaaaac tccattttga aagattggag
     6661 cgtaaaaata gttttattgt tatcgataca gatgatacaa aaaaaataat taaagactta
     6721 atccatgata aaaacaaaga taatgtctat gatattatcc aatacatatc ttattgcaaa
     6781 aatgaaggca aaagagtaag caatgtcttt gaagatttaa atttactaaa agaacataat
     6841 tttgaaaaat atcaaaatga atacaaattt gccaactatt accgtgctta tgaagaatac
     6901 ttattaaaac aaaattttgt agattttgat gatcttttat tgctaagcaa tctcatttta
     6961 gaaaatgata taaattttgc caaagaacaa agcttacttt ataattacat tacagttgat
     7021 gagtatcaag atactaatac cttgcaatat aaaattctaa aaaatctatg ttgtatgcat
     7081 gaaaatatca cagttgttgg tgatgatgat caaagtattt atagttggcg tggagcaaaa
     7141 attgaaaata ttttaaattt tcaaaatgat tttaaaaatg ttaaacttgt aaaacttgaa
     7201 caaaactatc gttcagtagg gactatttta caagcagcaa ataatctcat atctcacaat
     7261 gagcaacgac ttggaaaaac tttaatctgc actaaagata caggggaaaa tattaaaata
     7321 ttaaaaaacg aaaacgaaaa agatgaaggt ttatatatcg ctcaagaagt gaaaaaattg
     7381 ctaaattctg gagtagaagc taaagagatc gccattttat ttcgagttaa tgcactatca
     7441 agagcaatag aagaagcatt tatgaagaaa caaatttctt ataaactact tagtggtatg
     7501 cgtttttatg agagattaga aataaaagat ttaatctcgt atcttagact tatcttaaat
     7561 ccaagcgatg atttgtcgtt taaacgtatt attaatcgcc ccaaaagatc cataggagaa
     7621 aaagccctaa aaaatttaga agaatatgca aaaaaacgtc aaatttcact ttttgatgcc
     7681 ctatgcgaaa gcgatggtgg tgtaggaatt ttaacaacaa aaaaagcaca aaatgaagca
     7741 aatattttta tacaaaatat tcacactcta aaaagctacg ataatgcaaa aaaggttttt
     7801 gacaatatag aagaattatt taaaattaaa gattattttt cagagcaaga tgatggagat
     7861 gaaagaatca gaaatcttga tgagttttat gctaatctaa gagaaaaact caaagaagat
     7921 cccaaagctt ctttagaaga tctacttagt gaaatttctt tattaagcga tcaagataat
     7981 ttagatgaag aatgtgtttg cttgatgagc attcatgcta gcaaaggttt ggaatttgat
     8041 tatgttttta taataggctt tgacgaagga ttttttcctt taaatagcga agaaaatctc
     8101 gaagaagaac gccgtcttgc ttatgttggc atcactcgcg ccaagaaatt tctcacaata
     8161 agtgttgcaa attctcgttt ttatcatggt tcaagagcaa atatcaatcc tagtcgcttc
     8221 ttagaagaaa gtaaattaat caatgaaaaa tcaaaaaatc aaaatataca aaaaactagt
     8281 ttttgcaaag gagatctagt taaacataaa atttttggca ttggcagggt tgttgaagtt
     8341 aataaaagcg gaaaagagga aaagcttaat attaattttg gtggcataat gcgtgtaatc
     8401 atggcaagct ttgtggaaaa agcagtatga acaagatctt tgcagccttt aaaccaaggg
     8461 gtttgagctc taacgccttt ttaagcactt taaagaaaaa atataaaaat aaaaaagcag
     8521 gatattctgg cactcttgat cctttcgcca aaggggtttt aatcgttgca tttggacaat
     8581 acacaaaact tttccgtttt ttaaaaaaaa ccccaaaaac ctataaagct actttatggc
     8641 ttggagttta ctccttaagt cttgatgatc aaaatataaa agaaattcaa aatataaaag
     8701 aatttgatct tgcaaattta aaacaaatca ttgatcaaat gcaaggaatt atctcctata
     8761 caccacctca atttagcgcc aaaagaatca atggaactcg cgcctatgaa cttgcaaaaa
     8821 aaggtataga agcaaattta aaaccttgtc aaatggaagt atttgattgt aagatcttaa
     8881 gctataatca tcctttttta aatattgaaa tcacagtcag tgaaggtgct tacataagat
     8941 cttattgtga actttttgct agaaaactag gtattaatgc gactttaagc tctttagagc
     9001 gcattaaaga aggcaaattt gtttataata atgagaaaag cttaaatgtg ttaaaataca
     9061 ttaacctaaa gccaaatttt atcaaggatt taaataaact cgaaaatggt gctaaaattt
     9121 ttgtcgaaga attagaattt catgatgaag gagattatta tattgaaaca gaaaaatatt
     9181 ttagcataat taatattaaa gaaaatacag taaaatatct tctaaataag gttgaaaaat
     9241 gttaatatta tcaagaaaag aaaatgaaag tataattatc ggagaaggta tagaaatcaa
     9301 agtcgttcaa acagggaaag gatatgccaa aataggtata gaagctccaa aatcccttat
     9361 gatacttaga aaagaacttg ttcaacaagt aaaggatgaa aatttgcatt ctgttgttca
     9421 gaatgatatt aaacttgatg acttaagcaa aaaactaatc aaatgaaagc ttacgctaaa
     9481 gcaaatattt ttttaaaact taccggtttt gactcaagaa aatatcatct tttagaatca
     9541 cgatttatac ttttaaaaga tgtttttgat gagcttgagc ttgttgacaa agaatcagat
     9601 tctaaaaaag aatttgaaat cattagtaat tttaaatgcg aaaataatat tattcaaaag
     9661 gcttatttgc tactttctag aagatataat aacgaattaa aagaattatt tagcaaaaaa
     9721 agtctaaaac tcacaaaaaa tatcccagta tgtgctgggc ttggtggtgg aagtagcgat
     9781 tgtgcgagtt ttttactact aataaatgaa accctaaatt taaaattaaa cctacaagaa
     9841 cttataaatt taagcataca actaggaagt gatattgcct tttttttaag tggctttcac
     9901 tctgctaatg taagtagctg tggcgaaatt atagaagaat ttgaagatga catacctaat
     9961 ttaaaatgga cttttccaca aatatcttgc caaactaaag ctgtttatga tgaatttgat
    10021 agaggaatat ttgactttca aaaaaacaat aatcaagcgc aaatatacaa aaaactcagc
    10081 acaaaagagt tgttacaaaa ttttaaaaac aaagaattaa atgatttatt tactccttgt
    10141 gcaactttat atcctaaaat gaagtcttac ttacaagaag atttttttct aagcggtagc
    10201 ggtagtagtg tttttaaggt tgatcgatga aaattattgc gagaaataaa aaagctttat
    10261 ttgattatag catcatagaa cgctttgaag ccggaattgt ccttaaagga agtgaagttg
    10321 tagccttaag ggcaggaaga gcaaatctta aagactcttt tgttcgcatt ataaaaaatg
    10381 agattttttt acttaattct catatttcat tacttcatac tacacactct ttctataaac
    10441 acgaagaaag aggcgctaga aagcttttaa tgcatagaaa gcaaattgat aaattattag
    10501 gtaaagtaag tatagaagga tatactatcg ttgcattaga tctttatttt aacacaaaaa
    10561 ataaagtaaa agctaccctt gctttagcta aagggaaaaa tttgcacgac aagcgtgaaa
    10621 ctttaaagaa aaagcaagcc gatttagaag ctaaagctgc tatgaaaaat tacaaataaa
    10681 ggaaaataaa tgaaaaaaat ttcagcccta tttttaataa gtttagcatt ttttcttaat
    10741 gcttgctcca aggaagaaga aattcaaaat gattttatgt ttgaagagta tcacaaagga
    10801 gataaaatag tcttaaatag tgtaaatggt ggaagcaaaa ctttaataag aacagataaa
    10861 ggttttgtgg tggaaggaga ggaaggaaaa gttctaatgt ttgatttttt tggcactttt
    10921 tgcaccccat gtaaagaaga agctttagat cttagcaaac tttggaaaaa taattctagc
    10981 aaatttatca ttataggact tacacatttt gaagatgtta gcgatgaaac agttaaaaaa
    11041 ttcgcggatg attatggtgc ttactatttt ctaagcaatg acagctctaa tgatcgtatt
    11101 attgctcaaa ttttaaaaga tatagactat caaaatatgg agcaacttcc ttttaaagtt
    11161 gttttaaaaa atggaattta tcaaaaaata agcgattact ggaataataa tactccaaca
    11221 aatttttatc ttggtaaaat tccaacagaa ctcatgcaag aagatttaaa taaaatctac
    11281 aaaggaaaat aatgccaaaa acccaaactc tagagcaaac aaaacttagt gaaccaaaaa
    11341 tgtataaagt tatactctta aatgatgatg taacaaccat ggattttgtt atagaaattt
    11401 tgatgaatat ttttcatcaa aaccttgaga aagcaagtca aacaatgtta gaaattcatc
    11461 acaatggttc tggaatttgt ggcatttaca cccaggaaat agctctttca aaacaaaaaa
    11521 aagttatgga tgcggctaaa cttgctaatt ttccactaca agcaaaggtg gaagaagaat
    11581 gaaataccaa gaaaatttac aaaaatatct tgataatgcc aaaaatctaa gcttaataaa
    11641 tcaccatgaa tttgttacct gtgagcatgt actgtttgca ttactaaaac taagcactga
    11701 ttttaaggat atatttgaag aattttcaga tggagatctt gaacttctag aaactgaatt
    11761 aaaaaattac atttctcaaa acaatcaagt tattaaacaa gaaatagaac ctacaatatc
    11821 tgttgtttta gatgaaatct tactttcatc taaaaataaa aataatgaaa ttaaaattat
    11881 agatttttta gaaaagctca tacaggattc aagaagttat tctagctatc tcttaaaaaa
    11941 acacaacata aatcttaaca aaattcaaga acttcaaaat catgaaaata tacaaaattt
    12001 aaacaaccac acaagtgatt taacactttt ggctcaaaat ggcaagattg atcctttaat
    12061 aggaagaaaa tttgaacttg aaagaatgat gcaaattctt tcacgtcgca agaaaaataa
    12121 tcctatttta gtaggagaag caggagttgg caaaacggcc attgtagaag gattagcatt
    12181 agctattgcg gaaaaaaagg tgcctaaaaa cttacaaaat gcaaaaattt ttagtcttga
    12241 tatggctagt atacttgcgg gaacaaaata ccgtggagat tttgagaaaa gaattaaaga
    12301 aattttaaat gaacttgaga aaatacccaa tgctatttta tttattgatg aaattcacac
    12361 tatagtagga gctggaagca caggagaatc tcatactgat ttttccaatc ttttaaaacc
    12421 agctctaagt aatggaactt taaaatgcat aggtgcaaca acttttatgg aatataaaaa
    12481 tacttttgat aaaaataaac ccctaagtcg ccgttttgct aaaataaatg tagatgaacc
    12541 aagccaagaa gaaagcttgc aaattcttaa aggattaaaa aacaaatatg aagaatttca
    12601 tcatataaaa ttaaacgatg aaattcttca atatgctgta atttggggta aaaaattttt
    12661 taatgataaa tttttacctg attgtgctat agatctgatc gatgaacttg gcgcttcttt
    12721 tgctttaaat ccaaaagcta aaaaaaatgc caatttaaaa gatttagaaa atgttttagc
    12781 aaaaatgacc caccatcaca aaatatttga attcgatcaa aataaagctt taatgaattt
    12841 aaaaacaaat ttaaaagcaa aaatttttgg ccaagatgaa gttatagata gccttgtttc
    12901 atcacttaag caaagttttg cgggatttaa aaattccaat acaccacgcg gagtgttttt
    12961 gtttactgga tcaagtggag ttggaaaaac agaactttgc aaagctttag ctgaattttt
    13021 aggtttaaat ttagaacgct ttgatatgag tgaatatgca gaaaaacata ctataagtaa
    13081 actaatagga tctccagctg gatatatagg ttttgaagag ggtggacttt taagcaatgc
    13141 tattcgcaaa aatcctttca gtcttgttct ttttgatgaa atagaaaagg ctcatcctga
    13201 tttaagcaat acctttttac agatttttga caatgctgaa ctcaccgaca atagcggtct
    13261 taaagtagat tttaaaaata caatcattat tatgacatct aatctaggac ttaaagaaag
    13321 caatgagctt ggttttttaa gtaaaaatga agaaaaaagt aatcgtgcta tcaaagattt
    13381 ttttgctcca gaatttatta atcgcattga taaaatt
//
LOCUS       DAQSLY010000036        13314 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.036, whole genome shotgun sequence.
ACCESSION   DAQSLY010000036 DAQSLY010000000
VERSION     DAQSLY010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.036"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..139)
                     /locus_tag="R2H98_000822"
     CDS             complement(<1..139)
                     /locus_tag="R2H98_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEE9023718.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KD"
     gene            complement(139..1386)
                     /locus_tag="R2H98_000823"
     CDS             complement(139..1386)
                     /locus_tag="R2H98_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEE9023719.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1390..2592)
                     /locus_tag="R2H98_000824"
     CDS             complement(1390..2592)
                     /locus_tag="R2H98_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEE9023720.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDNYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(2604..3410)
                     /locus_tag="R2H98_000825"
     CDS             complement(2604..3410)
                     /locus_tag="R2H98_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023721.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLKLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYIDNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVFDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3404..4342)
                     /locus_tag="R2H98_000826"
     CDS             complement(3404..4342)
                     /locus_tag="R2H98_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023722.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLSGNNVVVIDNNK
                     AQETNQTESVLPSQNTSLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTLKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPVGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4335..5018)
                     /gene="rlmB"
                     /locus_tag="R2H98_000827"
     CDS             complement(4335..5018)
                     /gene="rlmB"
                     /locus_tag="R2H98_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEE9023723.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIAISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIIKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5020..5856)
                     /gene="rsmI"
                     /locus_tag="R2H98_000828"
     CDS             complement(5020..5856)
                     /gene="rsmI"
                     /locus_tag="R2H98_000828"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEE9023724.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQDWV
                     KF"
     gene            complement(5859..6059)
                     /gene="rpmE"
                     /locus_tag="R2H98_000829"
     CDS             complement(5859..6059)
                     /gene="rpmE"
                     /locus_tag="R2H98_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEE9023725.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6138..6794)
                     /locus_tag="R2H98_000830"
     CDS             complement(6138..6794)
                     /locus_tag="R2H98_000830"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEE9023726.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(6796..7203)
                     /locus_tag="R2H98_000831"
     CDS             complement(6796..7203)
                     /locus_tag="R2H98_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023727.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7203..7628)
                     /locus_tag="R2H98_000832"
     CDS             complement(7203..7628)
                     /locus_tag="R2H98_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEE9023728.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(7628..8209)
                     /locus_tag="R2H98_000833"
     CDS             complement(7628..8209)
                     /locus_tag="R2H98_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEE9023729.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8206..8949)
                     /locus_tag="R2H98_000834"
     CDS             complement(8206..8949)
                     /locus_tag="R2H98_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEE9023730.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLTKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(8952..9914)
                     /gene="moaA"
                     /locus_tag="R2H98_000835"
     CDS             complement(8952..9914)
                     /gene="moaA"
                     /locus_tag="R2H98_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEE9023731.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(9927..10442)
                     /locus_tag="R2H98_000836"
     CDS             complement(9927..10442)
                     /locus_tag="R2H98_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023732.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDNEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(10439..10936)
                     /locus_tag="R2H98_000837"
     CDS             complement(10439..10936)
                     /locus_tag="R2H98_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023733.1"
                     /translation="MELTLFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENFLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(10927..11811)
                     /locus_tag="R2H98_000838"
     CDS             complement(10927..11811)
                     /locus_tag="R2H98_000838"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEE9023734.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKTTLFISAF
                     CHILAVLFWLLFVWEVWGIALGKIALIGVIISGIILALEHRIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            11882..12751
                     /gene="miaA"
                     /locus_tag="R2H98_000839"
     CDS             11882..12751
                     /gene="miaA"
                     /locus_tag="R2H98_000839"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEE9023735.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(12737..13300)
                     /locus_tag="R2H98_000840"
     CDS             complement(12737..13300)
                     /locus_tag="R2H98_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEE9023736.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNINLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         4539 a         2129 c         1659 g         4987 t
ORIGIN      
        1 catctttttt ggctattata tcgatttctc caaatttaga atggaaattt ctttttaaaa
       61 tttcaaagcc ttgttttttt aaaaatttac aagccttatc ttcccctaaa attccatcta
      121 aataagcttt tacacccatt attctatacg catcataaaa ggcttggttt ttataaaatc
      181 ttgtttgcgt aaaatttcaa gcaaattttg tatgcttttt tcataagtta aatgtgtagt
      241 aaaaaacaaa gtgctgtaat tttcatcatt ttttttaggt ttttgtaaaa aactatcgat
      301 agaaatatta ttttcactca tcaattgtgt gattttagat aaaatcccta ttttatcttc
      361 aactttcacc cttaaataat attttgtata aatttcatct ttgcttaaaa gcttgtattc
      421 taaagtattc acaaaaccaa gcattggtgc ttttacctga tctcttgcta tatccataag
      481 atctgaaatc acagcacttg cagtggcctc tcctcctgct cctgctccat aatacaaact
      541 ttcacccaac aaatctccat taatgcttat agcattcatc actccatcaa cttttgcaag
      601 cattttttct ttatctatca tagtaggatg cacccttaat tctactttat tttcacgcac
      661 cttagctata cctaaaagtt ttatggtaaa ttcaaactca ttagcaaaat acatatcttc
      721 aggtgcaatt tcactaatac cctcgatcaa aatatcttca ggtttagctt taagattata
      781 agcgatactt gataaaacaa gcagtttatg tgctgcatct tgcccttcta tgtcaaaagt
      841 tggatcagcc tctgcataac ctaaattttg agctatttgc aaagcttgtt taaaactcat
      901 atttttttga ctcatagaac ttaaaatata attactcgta ccatttaaaa tcccttttat
      961 agccaaaata ttatttgcac ttaaaccttc ttttaaaacc ttgataatag gaattcctcc
     1021 agccacactt gcttcataac caaaagctaa atttttagcc aaattttcaa gttcataacg
     1081 atgataagca agcatagctt tatttgcagt aacaacagct tttttctttt ttaaaatttc
     1141 actcactatt ttaaaagctt catccacccc acccattaat tctacaaaaa catctacatc
     1201 agcatttaaa atttctgcaa cgctatgagt aattggaatt aaagcatttt ttttaggact
     1261 tctagcaaga gcgatcacag gagttatgct ttgcccacat cttgcacgaa taagtttatc
     1321 attttctaaa agaaatttaa ccaccgcact tccaacagtg ccataaccaa gaatcgctac
     1381 tttcataact tactctttta aatatttttt gatattacgt gcagcttggc gtatgcgatt
     1441 ttcattttca attaaagcaa ttcttacata ctcatcacct gcttcgccaa aacctacccc
     1501 aggacttact gcaacactag cacgctgtaa aagttgcttt gaaaattcta aactttttaa
     1561 atgtcttttg ctttcaggga gttttgccca aacaaacata cttgctcttg gtttttgaag
     1621 tttccagcct gcattttcaa aagcttcaag taaaatgtgc attcttttat cataagttgc
     1681 acggatttca tctacacaag tttgatctcc atctaaagct atggtagctg ctacttgaat
     1741 aggtgtgtac ataccataat caaaccaaga ttttattttt ttaagcgcac tgactaagcg
     1801 tttatttcct actacaaaac ccacgcgcca gcctgccata ttgtaagatt ttgaaagagt
     1861 gtaagtttct accgctacat cttttgcacc ttcaatttcc aaaatagaag gagttttata
     1921 gttatcataa gttaaatctg cataagcaat atctgaaata atataaaatc tttctttttt
     1981 tgccgttgct atcaatcttt cataaaaact tttctcacaa gttactgttg ttggattatg
     2041 cgggaaatta acaacgacat attttggacg cgggatgctt tcatttaaag ttttatgtaa
     2101 attttcaaaa aattgatttt catcaagctc aaatttttca ttataagcta aaggcatttt
     2161 tgctacatta cctcctgcta taataaaagc ttgagtatgt ataggataag caggagttgg
     2221 cacaatagca acatctccag gatttataat cgctcttgca agatttacaa aaccctcttt
     2281 tgaacccata gtagctacaa cttcattttc aggatctagg ttgacattat attttctttt
     2341 ataccaatta caaattgcta agcgaagttt ataaatcccc atggatgtag aatatcccga
     2401 ggttttatct ttgttagcac tttcacaaag tttatctata atgtgttgtg gagttttacc
     2461 atcgggattt cccattgaaa agtcgatgat atcctctcca gcacgtcttg ctgccatttt
     2521 tatcgcattt acttctgcga aaacataatt tggaagtctt tctatggtat taaaacggat
     2581 ttcatcaaac atttcttaat cctttatttt ttaagtgtga tttttaaacc cctgcgtata
     2641 ttatctaaac tatacatatc gcttacaata gcatatatag caccatttgg aataagttct
     2701 gaaaaatgat tatttttatt ttcgcttttt actgctttaa ttagattcag atttttatct
     2761 aaaaagaaga ttttaggaaa ccaattgtct aaatcatttg catcaataat caaatttgta
     2821 gcatttttta aatcaaacac atagtcttta aggggttttt ctaatgattt tggagtattt
     2881 aaattaacat ttgtattggt ttttaataca gcattggaaa aatttaaatc atattcatag
     2941 tcatatgctc caatgcgctt aatattatct atatagacag aattttcttt taagagattg
     3001 taaagcgttc caggatctaa aacatattga gattctactt gtatggtata gtcaatattt
     3061 ccttctctta aaatcaaatc tgtagggata aaatatatat atccggcatc tgttaaaaca
     3121 tcggataaaa ttttaaaaaa cataacttca tcagcttttg ctttaaaatt tagttttaga
     3181 ctttgaggat ttgatagtgt taaggcaatt aaagaattgg tttttaatat ttgagatatt
     3241 tttgcaatat cacaatttcc attattatct atgtaagaat tatttgagaa taataattct
     3301 agttgagaat ttttactagg attgtttact aaattttttg ctaattcaag acttgagatt
     3361 gcaaaagata tattaaccca aaaagtaaga ataataattt tttttaccat tctttacctt
     3421 tatttaattt tacaaattca gcagctgaaa tactggtaat ttttccatct ttaatcaaga
     3481 aacgttttga aattcctaca ggaaattttt gttctttatt ttcttgatca aacattgtta
     3541 aagctgcagc ccctgttaaa attaactgat ctttatctaa agaaatatta aaatcttttt
     3601 ctttaacaaa gcttgttttt ttaaggcttt ttaaatctat caaacctatc caaatcttgg
     3661 tagaggtttt aaaatgtgct tcttttaaag aatcagtttt tagtgtattt gtgtcttctt
     3721 ggatttgggt atttttttct tcatcgagta gagttgtgtt attttcactg atattatttt
     3781 ctatgcttat gtttttatca ttttcttgta atgaggtgtt ttggcttggt aaaacgctct
     3841 ctgtttgatt tgtttcttgt gctttattgt tgtctataac aacaacattg tttccactta
     3901 aagattttaa attttcttgt gcttgtccta ttatgtctat aactgttgca ctagtattat
     3961 tttgttcatc tttgaaaaaa gttttaagtg tatcaaaata ataaattcca cttcctataa
     4021 tcactaaaac aataagaaca atcaaaaaag gccaagcgtt agaggatttt tgactataag
     4081 catctagttt tggggttatc atttttgatt ttgtttgtgg agtaggattg ttttcgttaa
     4141 gataagcttc atactcttcg ttaaaatcac taaagtcgag ttcgtattct ctgcttaaaa
     4201 ttttaacaaa acctttaaca ttaaaacgac ttaaaacagc aaaattcttt tctactaaag
     4261 cttcaagaaa atcaagttca atttgcgttt ttgctgcaac ttcttttaaa tttaattctt
     4321 gtattttttt ccaattaagc atttaacatc ctatcacaaa gtattgcaaa agcagcgctg
     4381 acattaagac tatcaaaatt atttttcatc gcaatgccca cacattcatc gcactttttt
     4441 ataattttag agcttaaacc aaaaccctca ctacccaaaa ctaaaacttt tttaccattg
     4501 cttattttta cactgtgaat ttcttttccc gagccatcgc tcgcataaaa ataaaaacct
     4561 acttgtttta gttcgtttat tacacttaaa gcatcgttgc ttattgcaat aggtaaatca
     4621 agagccgctc cgctgcttgt gcgaattact ccttccatgg ctaatttttc accaataaaa
     4681 attaaagccc caacccctaa agcataagct gtacgcgtga tagcccctat atttcctaca
     4741 tcgctaattc cataaagcat aacaataaaa tcattttttt tgatctcatt taaattcgca
     4801 aaagaacttt ctttaatatc tagcaaaaaa ccttgatgat ttccaccttt cgcataagct
     4861 tgagcagttt taaaatcaag ttttttgatt ttaaaacctg attttgcgat tttggaaaaa
     4921 gtaattttat cacattcttt tgctaaataa agctcattga tacagtcttt atgatattct
     4981 aaaatataaa aaaatatttg cttcccataa actatcatat taaaatttta cccaatcttg
     5041 acttaaaagc agtttttgat aaatttcttt tgcatttttt ccattgatct ttgataataa
     5101 ttttgctttt gcttttaaag acagctctaa atccataata tctttttcac aaagagtatt
     5161 ttgcaaaaaa ttttgctctt ttgattgcag tactacaacc cattcaccgt ttaaattaga
     5221 cttttttaaa atttcagaaa gctctttagc attgccttta aatttttttt caaatttttt
     5281 actgatttct ttaatcaaaa aaatttctct ttggctgtct agaatcataa tctgttctac
     5341 taaagataaa atacgcttgg gggattcgta aataatactt ggataaggaa agtttaaaat
     5401 tttttctata tctttttgtc tttctttgcc tttatttgct aaaaaaccaa taaagataaa
     5461 ttctttttga caaaatgctg agcttacaag agcaactaag gctgcatttg cacctggtaa
     5521 aatttcatag gtgatattat tttcttgtgc aaattctacc aaagccttgc caggatcact
     5581 aatccctggc attcctgcat cgcttaaata agctacattt ttttcaaata tctttaaatc
     5641 aatacttgct aaaacttctt tttcattatg ggagtgtaag gctataaatt tagaaatatg
     5701 tatatcagtg tgaaatttgg tatttaataa cgaaatcaaa gacttactta ctcttgtatc
     5761 ttcgcaaaac acaagatcgc aagtctttaa aagttctaag gctctaaaag aaatatcgct
     5821 taaatttcct atgggagtag gaataaaata aagcataatt attgcattgc gtattttttc
     5881 ttaaatttct ctacacgacc tgcagcatct acaatttttt cactgcctgt aaaaaaagga
     5941 tggcaatttg aacaaatatc tactcttaat tctgctttgt ttgactttgt tgtaaaagta
     6001 tttccacaag cacaacttac tttgcattct acatattctg ggtgaatttc ttttttcatt
     6061 agttttcctt aaaaattaaa acaataagcc gtgattataa attatttaac ataaaaaaga
     6121 gattaattta agaaaagtta aagcaaaatt tttgaagcta tagctataat agctgtttga
     6181 ctttttagaa tattagagct tttaagagag attttccggt taaacaataa tctctcatca
     6241 ttgttaaatc caccttcagg acctataaaa tataattctt tttcatcgaa atgactttgt
     6301 tgttctcctt gaaaatcaac cataattgca tttggaaatt tttgaacaaa ttcttgagtg
     6361 ctttggtgga taattaaatc cattttagta tttctaccgc attgttcaca agaagaaata
     6421 atgatttttt caaatctttc taaatcgatt ttaaaatttc tttgtgaaaa atttgtaaaa
     6481 accaaatgta acttttttac tccaagttca tttaagaaag gtagagtttt ttctaaaatt
     6541 ttaatatcta taatggctaa ggctaagttt aattcacttt gttttatatt ttgtgatttt
     6601 ttgtttaaaa attttaaagt gcaagaattt cttgttaaat ttgtgattgt atagttgtaa
     6661 agaaaattat cttgtaaatt tctaagattt agctccgaat tttcctttac tcttcttact
     6721 tttaaatggt taaagttttc accttgaagt tgtataaact cttctccagc ttgcttgtta
     6781 tacaaaaatt gcattttata gatatctttc tattaaaaaa ggcaaaaaca ataaaaaaat
     6841 ttcaaaaggt aaaatcaaac aactaatcca tctaaaagtg gcatattttc taaatcttct
     6901 tgctttttta aaacaaacaa agtgaaaaat tgctaaggca aaaattaaga tccaagaaaa
     6961 aatcattacc cagatattga cattcatttg aaattgtttc attgctgata acaaacaacc
     7021 tgtaaaaata atcaaagcta aaaataaata ataaattggt aaaaataatc gtattctgcg
     7081 aataaaaatg aattcggttt taaaatttcc ttgtgttagt ataagataaa aaagcattaa
     7141 aaaaccgctc gcataaagac tataaagatg taaagctaaa aagaattcgt aactttgatc
     7201 cattattttc ctttgtttat aaaatcagct aaattttgaa tttgttcatc acttaaaaaa
     7261 ctatggtttt tatcttttat cgtttttatt ttttgtataa aaattttatt gctcaaggtt
     7321 ttaatggccg tgctgttttt aggttttaat tccccttttt ctccatgaca agtggcgcat
     7381 ttttgtttat ataaagagtt gataatacta ggattgactt catgttcatc atctgaactt
     7441 tgtgcttcat catctacagg taaaggcagg ttggagtcac ttaattctgt tttttcatcg
     7501 ttttgttcta tttggactac ttcttgatct gtattttgag tcttggaaat atttttttca
     7561 tcattagaac aggcagataa aactaataaa aaaaaactta aggcaattaa aattttagct
     7621 ttttgcatta aatctccttt ggatttataa aaatttcttc attttttaat ttgttataaa
     7681 aatctatatc attccattct gctttaatgc cattggaaaa ttctatgtct tgaagtgaaa
     7741 tttttggcat tagctcacta taggcatctt ctctaaaacc ttgtgcataa cctgttcttg
     7801 tttcatgaac aatgatgctt tgtaaagtca ctccttgttc tccatttacc atttttgttt
     7861 gttttaataa agcatctata agtatgaaaa atacacgaca aaaattttca gcacttacat
     7921 taacaggcag gcaaatccaa cgacttgaat attttttcat ttcttctaaa tattttgcgt
     7981 catcatattt aaaaagagtg atagcatgat caaaactatc aataatttgg cgtatatagg
     8041 tttttaaaag tccaaaatca tagaccattc cagcattatc taaatatttg ctttcaagta
     8101 aaacttcaac tttgtaagaa tgtccatgaa tgctactttt gcaacgctta gaagaacaaa
     8161 atctaacaat gtgtgcgttt tcaaattcaa ataattttct tataatcata caccctcttt
     8221 atcgttccaa agacgaatat gaattctatc agaataatta taaccattct taatacaaaa
     8281 ttcagcaatt ttttgagcat tttttgtaag gttttgctca ttttcaccca taggcataca
     8341 aaaaatttga tttggagctt cttttagaat ttcattgatt tctaaaaatg aattatcaag
     8401 agtattggca tctaaaacaa atttataaaa actatctttt gcgtaatttt taaatgcttt
     8461 taaagcttta aaatttaatc gtttatcttt ttttatccca ctattttgga gtttaacgct
     8521 taaagcaaaa atacattctt tgtaaaaagg atatctatca aaatcaattt ctatgcttcc
     8581 attgctttca aagtgtattt cgaatttatt ttttaataac atttggataa attctataaa
     8641 ttcaggattt tcataatgga ttaatggctc tccacctgtg ataacaacta taggatcaaa
     8701 gtcttttttt aattttatca ctctttttaa aagttcatta gcatttaaag tttcataact
     8761 ttctttaaaa tcttttgtga aaacagctct tatcgtgtca catccaatga gagttttatc
     8821 gttttttgat atttttacat taaaacctaa acagttgaaa ttgcaaccag caaaacgcat
     8881 aaaaatagct aattttccat tatatttgcc ttctccttga atgcttaaga aactttcaac
     8941 aagttgcaaa attaacctcc agtttgataa aaagcacgag atgaggtttc attatcaaca
     9001 acactccatt tatttttttc tggtttattt cttaatactt cttgtaatat ttctacagcg
     9061 gctttaatat caccttttcg aaccgcttct tttatgctta atgcttcatc aaaataaagg
     9121 caaggtatta acaagccttc agcacttaag cgtatgcgat tgcaagaatc gcaaaattca
     9181 tggctatgag gatctataat tccaaattca taatcatctg ccttgtaaat actcacaggt
     9241 gctttttcat ctttttttat aagttgaatt tgatattttt gactcaaaat ttgtataatt
     9301 tcatctcttt ttaatccttg taatttacca taagcatgag tattttccat aaattctata
     9361 aagcgaattt gagctttttt tgattttgca aattccaaaa gagatatcag ttcatcatcg
     9421 tttaaatttt taagagctac agtattaagt tttactttca aatctagatt taaagcttca
     9481 tcaattccag ataaaacact atctaataca tctttttgcg caagagtttt tgcttttttg
     9541 tgatctaggg tatcaagtga aatattaagt cgtttaagtc cagcattttt taggtcttta
     9601 gcaaagtctt ttagtaaaaa tccatttgta gttatagcaa ggtcaatatc gcttttataa
     9661 tcgctaatca tttttataaa aatacttaaa tcttttctta ataaaggttc tccacctgtt
     9721 atacggattt tttcaattcc ttcgtctata gctgctttaa caaataaaaa aagttcttcg
     9781 aagcttaata aattttcttt tggctgataa tcgaaaggaa tttttggcat acaataaagg
     9841 cagcgaaagt tacatctttg tgtaactgaa attctaagat aatttatctt tctaccgaat
     9901 tgatctataa gcatttattt tccattctat tttattaatt tcttaaattt taagacaagt
     9961 tctacatttc cagtgccaat gcgtaaatct ttagcgattt gttctatact ttttccttct
    10021 ttgaaaagat tttctatttt ttgttcttct gtatcgtaat ttggtgtaag tttagccatg
    10081 ctttgtgctt tttgttccaa atttaaaaga cgattttgtt gttcattttg aaaatcttct
    10141 atgatatgtt ccatagtttt tagtgttctt aaaacaggag tgatttttga actgatttgt
    10201 ttatcaagtt caatcataat ttcttctttt aaaagagagg ttttatagtc ttcatcctct
    10261 tcgttatcat ctttaactcc taattcttta cgaaaataat gaagttcttt ggtaatatct
    10321 tctatcacat tttgaagttt tgctattttt gcattatttt ctctttcttt gatattcata
    10381 taggctagca ttgcaattaa aagcacaatt ataaaaacta aataaagtac atcatcactc
    10441 attcttggcc tttcttattt cttatcatat ttctttgaat ttcaacaaca aaagcatcaa
    10501 aagccatttt atcttcaggc ttaattttga taatttttgc caatgtttga ctttgagctt
    10561 tgataaaaat agctattttt tgattattta aatcaaatct taaataatat tctttatctt
    10621 cttctaaaat agtatccaaa aaatttagat attcaaaatt taaagattct attacccctt
    10681 tttgcttaag tggtataagt tctttatttt tatctaaaaa attttcaagc cttaaaatat
    10741 cttcttttag acttaaaaga agatcaaaaa taattttttc accctcatca aaatcaatgc
    10801 gtaaagcaag ttttttccat tttaaaattt gagaaattgc tccaagtttt aggtattctc
    10861 caagaaaacg gttattttct atttcacaac attctaaatg agcttcaaat cctgctttaa
    10921 aaagtgttaa ttccataata aatcaatcca aataaaaata aaaaagataa tacttaaata
    10981 accatttaga gtaaaaaatg ctctatcaat atgagcaaaa tttttatgga caatcctatg
    11041 ctctaaggct aaaataatac cgcttataat taccccaata agtgctattt ttccaagtgc
    11101 tataccccaa acttcccata caaaaagaag ccaaaataat accgctaaaa tatgacaaaa
    11161 agctgatata aataaagtag tctttgaacc aaatttagca ggaatagagt gaagtcctat
    11221 ttttttatca tactccatat cttgtaaaga ataaagcaga tcaaacccag ctgtccaaaa
    11281 agttacacct aaacataaaa taacgctata aatgtgaatt tcacccataa ttataacact
    11341 tcctgcaata ggcgcaagtc ctaaacaaaa tcctaaaact aaatgtgcta aagaactaaa
    11401 gcgcttaaaa gctgaataaa tagccaatac caaaagcaca ggaaaagaca aataaaaggc
    11461 caaagtatta ataaaataag aacatgatat aaaaataagt gcattaataa tgataaaaat
    11521 ccatacgctt tttctaccta tttttccact gacattaggg cgatttgcac aacgaggatt
    11581 atccttatct atatcttcat ccattaaacg atttgtagcc atggcaaaat ttcttgcact
    11641 taccgcacaa ataatgccta aaatcaacgc cttaaaacca aaccaagcag tgtcatttgc
    11701 aagttttgat gctacaatca tagaggaaaa taaaaaaggc aaagcaaaaa tagaatgctt
    11761 aaatactaca agttctaaaa tatctttaaa ttttatccag aatgtgttca tttttctact
    11821 ttaaaatatt ttttgctatg attttactaa aatttttata aattttagga taaatattaa
    11881 aatgtttttt gaaatagcat taataggaac aaccgcgagt ggaaaaacat acatagccaa
    11941 tactttagca agagaattta atgctgttgt tttaagtctt gatagtcttt gtgtttataa
    12001 agagattaat atagcaagtg ccaagccttc acaagatgat cttgcgagta taaaatactt
    12061 tggggtaaat ttattgagtg tgaatgaaca ttttaatgtt gagttattca taagagaata
    12121 tcaaaaagca aaagaatttg ctttagctag aaatttacct ctaattatag taggtggaac
    12181 tggattttat ttaaaaacta tgatagatgg tttaagtgaa aaaaccttag agtcaaagag
    12241 ttctttaaat aacgatgaaa tttatgctct tttattaaat attgatccaa actataaaat
    12301 agaaaaaaat gatacttata gattaaaaaa atggctgggt atttatgaac aaacaagaga
    12361 aattcctagt gaatttttaa aaagaacaca aaaaactggg gtgcttaaag atatagaaat
    12421 ttatgagctt gcgtgggata aagaaatttt aaaaaaacgt attaaaacta gaacaaaaga
    12481 aatgcttgat aatggacttt tagatgaagc aaaaattctt ttttctaaat ttgatcataa
    12541 acttaaagca ttaaattcta taggtttgaa agagtgtaaa gaatatttag atggagaaat
    12601 ttcctttaaa gagcttgaaa atttaatcac gatacatact acacaacttg ccaaaagaca
    12661 aagaactttt aataaaaaat ttcaaagtaa agccttggaa tttgataaag ctttagctac
    12721 tttaagaatg aaattttcaa tcgaaaaata aatgttctat tagaattttt actcctagta
    12781 taattaaaac caatccgcct aaaagttcag ctttattttt aagataaatt ccaaatttat
    12841 tccctatttt tagagcaatg atacataaaa tgaaggtgat aatacctatt aaaaatatag
    12901 ctaataataa atttatattt aaaaatgcaa aactcacacc aactgctagt gcatcgatac
    12961 tcgtagcaat tgctaaagct agcatggttt taaagccaaa ttgattggca ttactatcgc
    13021 aattttcatt ttccaatgac tctttgatca tttttaatcc tattaaagaa agtaaaataa
    13081 aagctatcca atgatcaata ctcgcaataa aagatgcaaa agttatgcct ataaaataac
    13141 caatagttgg catcaaagct tgaaatccac caaaataaat tccaacaata agataatgtt
    13201 ttaaatgtag ttttttaaca ctaaaacctt tgcatagtga tacagcaaaa gcatccattc
    13261 ctaaagcaca ggataaaaaa ataagactat aaaaatccat aataaatcct aaaa
//
LOCUS       DAQSLY010000037        13192 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.037, whole genome shotgun sequence.
ACCESSION   DAQSLY010000037 DAQSLY010000000
VERSION     DAQSLY010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13192)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13192)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13192
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.037"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..420
                     /locus_tag="R2H98_000841"
     CDS             <1..420
                     /locus_tag="R2H98_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023737.1"
                     /translation="ILASENSNQDLLLFLSDEKIQDLFNDFDFFIKENSFYEGDCKDR
                     FFKQLVALELRKKIILFRKNILKNFDLELFENSFFELAIFLEYFYRFLEIKNLNKLYE
                     KYCKDRDKNIFSKIINNKNKFCKLLKKSSKNLKIYKG"
     gene            423..1130
                     /gene="ubiE"
                     /locus_tag="R2H98_000842"
     CDS             423..1130
                     /gene="ubiE"
                     /locus_tag="R2H98_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEE9023738.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEILD
                     YKSFSFGVSSMFIAKKL"
     gene            1127..2290
                     /locus_tag="R2H98_000843"
     CDS             1127..2290
                     /locus_tag="R2H98_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEE9023739.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGNFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            2300..3376
                     /gene="serC"
                     /locus_tag="R2H98_000844"
     CDS             2300..3376
                     /gene="serC"
                     /locus_tag="R2H98_000844"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEE9023740.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGICEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            3373..3723
                     /locus_tag="R2H98_000845"
     CDS             3373..3723
                     /locus_tag="R2H98_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEE9023741.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNETYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3720..4694)
                     /locus_tag="R2H98_000846"
     CDS             complement(3720..4694)
                     /locus_tag="R2H98_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEE9023742.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKIVDTTDEWITRRTGIKERR
                     IASENENSSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4687..5673)
                     /gene="plsX"
                     /locus_tag="R2H98_000847"
     CDS             complement(4687..5673)
                     /gene="plsX"
                     /locus_tag="R2H98_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEE9023743.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNGNATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNRTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKSSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5679..5825)
                     /gene="rpmF"
                     /locus_tag="R2H98_000848"
     CDS             complement(5679..5825)
                     /gene="rpmF"
                     /locus_tag="R2H98_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEE9023744.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5849..6202)
                     /locus_tag="R2H98_000849"
     CDS             complement(5849..6202)
                     /locus_tag="R2H98_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023745.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EAYLSDYFYCINCNN"
     gene            complement(6203..6616)
                     /gene="ndk"
                     /locus_tag="R2H98_000850"
     CDS             complement(6203..6616)
                     /gene="ndk"
                     /locus_tag="R2H98_000850"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEE9023746.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIDFFFKPNEIC"
     gene            complement(6729..7013)
                     /locus_tag="R2H98_000851"
     CDS             complement(6729..7013)
                     /locus_tag="R2H98_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEE9023747.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            7219..7815
                     /locus_tag="R2H98_000852"
     CDS             7219..7815
                     /locus_tag="R2H98_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEE9023748.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7934..9022
                     /gene="flhB"
                     /locus_tag="R2H98_000853"
     CDS             7934..9022
                     /gene="flhB"
                     /locus_tag="R2H98_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEE9023749.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(9028..9771)
                     /gene="motB"
                     /locus_tag="R2H98_000854"
     CDS             complement(9028..9771)
                     /gene="motB"
                     /locus_tag="R2H98_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEE9023750.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(9774..10550)
                     /gene="motA"
                     /locus_tag="R2H98_000855"
     CDS             complement(9774..10550)
                     /gene="motA"
                     /locus_tag="R2H98_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEE9023751.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLVEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            complement(10567..>13192)
                     /gene="polA"
                     /locus_tag="R2H98_000856"
     CDS             complement(10567..>13192)
                     /gene="polA"
                     /locus_tag="R2H98_000856"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEE9023752.1"
                     /translation="IIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYNLKNEYK
                     SDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGY
                     EADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKY
                     GVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSR
                     NLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELNTLLKK
                     LRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFS
                     FCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKIIQNNFD
                     LNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASVELEKA
                     CKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEI
                     LMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKV
                     LNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTATGRLS
                     SKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFA
                     NDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEK
                     YFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSSLQ
                     GSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIMENIVKL
                     KVKLKTSSSIAKNWGDLK"
BASE COUNT         4370 a         1972 c         2096 g         4754 t
ORIGIN      
        1 attttagcaa gtgaaaattc aaatcaagat ttattactat ttttaagcga tgaaaaaatc
       61 caagatttgt ttaatgattt tgattttttc ataaaggaaa attcttttta tgaaggtgat
      121 tgcaaagata ggttttttaa acaacttgtt gcgttagaac ttagaaaaaa aattatttta
      181 tttagaaaaa atatactaaa aaattttgat ttagagcttt ttgaaaatag tttttttgaa
      241 ttggcaatat ttttagaata tttttatcgt tttttagaga taaaaaattt aaacaaactt
      301 tatgaaaaat attgcaaaga tagggataaa aatatttttt ccaaaataat caataataaa
      361 aataaatttt gtaaattgct taaaaaatca agtaaaaatt tgaaaattta caaaggataa
      421 aaatgcaaaa acaagaaaaa attatagaaa tgtttaatca aattgcacct acttatgata
      481 aggcgaatag aattttaagc tttggagctg atgtagcgtg gcgcaaaaaa gcttgtcaaa
      541 gagtgatgag tttgtattta aaaaaagatt taaaaatcgc tgatattgcc tgtggcacag
      601 gggatatgat agagatttgg caagagagtg ctttaaaaat ggaaaaaaat attctaaata
      661 ttaaaggtat tgatccaagt agtggcatgc taaatgttgc aaaagaaaaa tttccaaatg
      721 tcgaatttat agaagcaggg gcgcaaaatt tacctttaga aagtcaaagt ttagatattt
      781 taagcattag ttatggcatt cgcaatgttg tagaaagaca aaaagcctta agtgaatttg
      841 ctagagtact tcaaaaagat ggtattttgg tagttttgga atttacaaaa agagaaaagg
      901 gtggatttat agcagcttgt agagattttt atcttaaaaa tattttacca agtataggtg
      961 ggataatcag taaaaataaa agtgcttatg agtatttgcc aaactctatt gaaggatttt
     1021 taagtaagga agagttcatc ttagaactta aaaatgctgg ttttgaaata cttgattata
     1081 aaagttttag ctttggcgtg agttcaatgt ttatagcaaa aaaactatga caccaacaga
     1141 attaaatctt aaagcaaagg ctttattaga aacacatttt gatgatatag ttttaagtgg
     1201 agaaatttca aaaattactt tgcatggttc aggacattgg tattttgatt taaaagatga
     1261 aagatcaagc attgcttgtg ctatgtttaa aggagctaat ttaaaagtcg gatttaaacc
     1321 agctgtgggg aattttttag agctttgtgg aagtgtaagt ttatatcctg aaagtggtcg
     1381 ttatcaattt atcgctacta gtatgaaaaa agcaggtttt ggggatttgg aagcacagtt
     1441 tttggcttta aaagagcgtt tgcaaaaaga aggacttttt gatccacgct ttaaaaaatc
     1501 tttgccaaaa tttcctaaaa aagtaggcat tatcacttca aaaacttctg ctgctttgca
     1561 agatatgtta aaacttattc accaaaaaga atattttttg gcaaaaattt atatttttga
     1621 tgctttaact caaggaaata atgctccttt ttctcttata caagctttaa aaaaagccga
     1681 tgatatggat ttagatgttc ttattatagc acgtggtgga ggaagcagag aagatctttt
     1741 ttgttttaat gatgaaaatt tagcaagaga gatttttaaa gcaaaaactc ctattatttc
     1801 agccatagga catgagattg attatgttat tagtgatttt gttgcagatt ttagagctcc
     1861 aacgccttca gctgctatag atactttgtt ttattctaag ttggatatag agcaaagttt
     1921 ggatttaatg gaagaaaaat taatgcaact ttggaattat aaaatacaaa attatgaaaa
     1981 tttgctttta aatttaagca aatttttcaa atttaattct ttgccaaaaa taatagatga
     2041 aaaaataaaa caaagccata atatagaaaa gcaattaaat catctattgg caaatcaaat
     2101 gcgttataat gaattaaaat tagataaatt gcaaaatgct tatttgcaac atgagaattt
     2161 ttttaataaa agcaaaaagt ttatttgtat cagaaaaaat ggtaaaatag caaatttaga
     2221 agatcttaag agtgatgata tcgttatttt aagttctcaa acttctcaaa aagaagcaaa
     2281 aattttataa ggatagatta tgagaaaaat caatttcagt gcagggccat cgactttacc
     2341 tttagaaatt ttagagcaag ctcaaaaaga actctgtgat tatcagggta ggggttattc
     2401 tataatggaa atttctcacc gcacaaaagt atttgaagaa gtgcattttg gagcacaaga
     2461 gaaagctaaa aaactttacg ggttaaatga tgattatgaa gtattatttt tacaaggtgg
     2521 agcaagttta caatttgcta tgattcctat gaatttggct ttaaatggga tttgtgaata
     2581 tgcaaataca ggagtttgga caaaaaaagc aattaaagaa gcacaaattt taggtgtcaa
     2641 tgttaaaacc gtagcaagta gcgaggaaag taattttaat catattccta gagtggaatt
     2701 tagagataat gctgattatg cttatatttg ttctaacaat actatttacg gcactcaata
     2761 tcaaaattat cctaaaacta aaactccttt gattgtggat gcatcgagtg attttttttc
     2821 tagaaaagta gatttttcaa atattgctct tttttatggc ggagtgcaaa aaaatgctgg
     2881 aatttcgggt ttaagttgta tttttatccg taaagatatg ttagaaagat ctaaaaataa
     2941 acaaattcct agtatgttaa attatttgac tcatgctgag aatcagtcct tgtttaatac
     3001 gcctccaacc tttgccattt atatgtttaa tcttgaaatg gattggcttt taaatcaagg
     3061 cggacttgat aaagtacatg agaaaaattc tcaaaaagct gctatgcttt atgagtgtat
     3121 tgatttaagt aatggatttt ataaaggaca tgcagataaa aaggacagat ctttaatgaa
     3181 tgtgagtttt aatattgcta aaaataaaga tttagagcct ctttttgtaa aggaagccga
     3241 agaagctgga atgataggac ttaaaggaca tagaatttta ggaggaattc gtgcaagtat
     3301 ttataatgcg cttaatttgg atcaggtaaa aaccttgtgt gaatttatga aagaatttca
     3361 aggaaaatat gcatgataaa gcgttttgat gagtgcgata gaatgtcgca aattattgtt
     3421 tttgataaat attttaagac tgcaggacaa gtggcttttg aacctagcgg agatattaaa
     3481 aaacaaacca aagaagcact tgcagaactt gatgctttgt ttgaaaaaat aggcgcaagc
     3541 aaaggagatt tgattcaaat tcaaatctgg ttagctaata tgcaagattt tgatgcaatg
     3601 aatgaaactt atgatgcttg gattaaaaat tatcctaaac ctgttagagc ttgtgtagga
     3661 agtgctttag cagagggtta tttggtagaa attcaagctt ttggaaagct aagagagaat
     3721 taaaaattct ctcctccaaa ttttaaaagc gcagatcccc aagtaaaacc accgccaaaa
     3781 gcatctagta agatcagatt tcctttttta agtcgtcctt cttcataggc atcattcatt
     3841 gccataggta tagaagcagc tgaagtattg ccatattttt gtacggtaat cacacatttt
     3901 tcatcgctta gattgagttt ttcttggacg gctttaatga tgcgtagatt agcttgatga
     3961 ggaataaaaa gatcaatttc ttgtgctaaa atgttatttt tagctaaaat ttctacaaca
     4021 tcattgctaa gcgtgtttac tgctatttta aaaacttcat tgcctttcat ttgcatagaa
     4081 agtgtttgac atagacttga tttttgcgat ctttgagtca ttaaaagatc tccataatta
     4141 ccattgcttg cagtatgtac atcaaggata tgattttcat tgtccaaact tacaactcca
     4201 gcacccgcac cgtctccaaa gagtatgcaa atgcttctgt cattgtaatc cataattgaa
     4261 cttgtttttt cagctcctac gattaaaaca ttttttttca aaccactttc tactaaggct
     4321 ttagcttgtt caagcaaata gataaaacca gaacaagctg ctgaaatatc aaaagcacta
     4381 atatttacaa gtcctaaatt tgaagcaatt ttacaagccg ttgaaggcat agtaaaataa
     4441 tcaggactta aagtggctac aagaatcgca tcaatatctt caggttttaa atttgctctt
     4501 tctatggctt ttaatgcagc ttttgtgccc aaatcgctag aattttcatt ttcactagca
     4561 atgcgtcttt ctttaatacc tgtgcgtcta gtgatccatt catcggtggt atctactatt
     4621 ttttcaagat cagcattgct taaaattttt tctggaatat aagaagctat acttttaaga
     4681 ccggctttaa gcattgtatt tcccaagttc attttctata agttcattga tatgagattg
     4741 gctaaaattt atagcttgaa aaattgcatt tttaatagct ctagaatcac tttttccatg
     4801 acttatgatc acgcagccat taactccaag aaggggtgct ccgccatatt cttgccaatc
     4861 tgtgtgtttt tttaattttt taaaagatga cttcataagt aaagcaccta ttttagaaat
     4921 aaaagattgc tttacttcgt tttttagaag ctgaaaaata gctgttgcta caccttcaca
     4981 agcctttaag ataacgtttc catcaaaacc atcgcagact aaaacatcta tttcaccatt
     5041 gaaaatatct ctaccttcag cattacctat aaaatttgga atttttttca taagctgatg
     5101 actttctttg gtaagttcat tgcctttgca ttcttcttca ccattagaaa gtaaagcaag
     5161 gcgtggtttt tgaatttgca taatttctct agcataaact tcacccatta tggcaaattg
     5221 aaataaattt tcagctttac aatctgtatt agctccaaca tccaaaagta aagttctgtt
     5281 aacgatattt ggcattaaag tggcaatagc aggtcttgaa atacctttaa gtcttccaag
     5341 ccttaaggta gccaaagaca tacttgctcc actatgaccc gctgaaacta cagcatctac
     5401 ttttttttct tttaataaat taatagcttt gtatatggtt gtttctttat tttttaaagc
     5461 atctgtggca tttccattca tcgaaaaaat ttcactagct tcttcgtatt gtatatattg
     5521 ttctaatttt tttggtatta aaggttttag aattttagaa tttcccacta agatagcgtt
     5581 aaaaggtttt gcttctagtg cctttaaaac gccttctata atgggttttt ctccaaaatc
     5641 accacccatt gcatcaatgg caatgttaat cattgatttt aatattcctt agttgttgga
     5701 ttcgcacggt gaggcatttt gtagcttcca tctttgtctt ttataggcat aggaagacta
     5761 actttatagt gagttctgcg tttagctgca cgagttttgc tcactcttct ctttggtact
     5821 gccatttttt ctcctttata aaatttaatt aattattgca atttatgcaa taaaaataat
     5881 cactcaaata agcttcaagc tcgctaatag caacttctat taaatcaata tgtccatcaa
     5941 aaaattctat agtattgctc aattcgtttg cttcatcttt aaaaatacca tcacttgcaa
     6001 aaagttctaa attttcttta atttcaagtt ctaactcagt tccacaacta tcacaaggtc
     6061 tatagataaa accttgcata atagcattta ttttaacaag cttaggattt atttttacta
     6121 aatttccctc aaaaatcata ttttcaagat taagtttaaa aggatattcc tttgtattaa
     6181 tcttagaaaa agggattttc atttagcaaa tttcatttgg tttaaagaaa aaatcaattt
     6241 ctatttttgc attttccaag ctgtcacttc catgaacagc attagcatca atactctcag
     6301 caaaatcggc tctaattgtt cctgctttag cttctttagg atttgtcgct cccattaaat
     6361 ctctattttt taatacagca ccttctcctt ctagtacaga aacaacaaca ggaccgctaa
     6421 tcataaattc aaccaagtct ttaaaaaaag gtctttcttt atgaacagca taaaaatttt
     6481 cagcttgttc tttactaagt tgaacttttt tcattgcagc gattcttaat ccattgcttt
     6541 caaaacgatc taaaattttt cctataacac cttttttaac agcatcaggt ttaattatag
     6601 ataaagtttt ttccatcttt gtaataactc cttattttaa taaagcttaa aattatactt
     6661 gaatttgttt aaagaaagtt aaattaaaag aaaaagctag gaatctctag ctttttaatt
     6721 ttttaaaatt atgcaaaaac tggagtgtcc ccacttctca tatcagcgcc aatattatca
     6781 cgacttggtt gtcctgattc tacagcactc caaactatac atccatctgt tgggcaagca
     6841 ctggcacaag ctggttgatc attatgtcct acgcattcaa cgcatttgtt tgcataaaca
     6901 taatatctat cttcaccttc tggattgtta gcatcatcaa cgatagcact cactggacac
     6961 tcatcaatac aagaaccaca agcaatacat atatctgtaa tttttacagc cattttttct
     7021 cctttttaat attaagattt aaaagatttt agcataaaat tcttaaataa tgtaaatttt
     7081 gataatcaaa aatttacatt atttgataat aattataact ttcttaaatt tttaatatta
     7141 ttttagatat ttaaaaaaaa ataaagattt aaacgatata atttcgttat caataaaatt
     7201 tattatttag gagaaaatat gatagttact aaaaaagctt tagattttac tgctccagca
     7261 gtattgggaa acaatgaaat tgttcaagat tttaatcttt ataaaaacat aggtccaaaa
     7321 ggagcggtag tattctttta tccaaaagat tttacttttg tttgtccttc agaaattata
     7381 gcttttgaca aaagatatca agaatttaaa aatcgtggca ttgaagtaat tggaatttca
     7441 ggagataatg aattttcaca ttttgcttgg aaaaatactc cagtaaatca aggtggtatt
     7501 ggtcaggtta aatttccgct tgttgctgac ttaactaagc agattgctag aaattttgat
     7561 gtactttatg cagaagcagt tgcccttcgt ggttcgttct tgcttgatgc tgatggaaca
     7621 gttcgccatg ctgtggttaa tgatttacca ctaggtagaa atatagatga aatgttaaga
     7681 atggttgata ctatgctttt tacaaatgag catggtgaag tttgtcctgc aggatggaat
     7741 aagggcgatg aaggtatgaa agctaaccct aaaggcgtgg ctgaatatct tggcaaaaac
     7801 gaagctaaac tttaatttct tagtataaag cctctttacg aggctttttc ttcattttta
     7861 ttctttaatt gaaattcata aattttctac tataatttta cacacatatt aaaattttta
     7921 tttaggctaa aatatggcag gcgaagatca agaaaaaaca gaagaaccca cgtccaaaaa
     7981 gatagaagat gcgcgtaaag aaggtaatgt tccaaagtct caagatgcgg cagctattgt
     8041 aactttgata attggagtaa ctataacttt atttatgatg agttttatgg gcgagagaat
     8101 tgtaaattta tatagatact atcaaagttt tattggtgtt gaatttgatt tgcgtattat
     8161 tcaagccatt atgattaaaa gcatttttga ggttttaatt attcttgcac ctattgtttt
     8221 aagtattatg attgctgggg ttttgggaaa tattatgcaa tttggtttta tttttacaac
     8281 caaacctatt atgccaaatt taggaaaaat caatcctttg aaaggtttaa aaaacctttt
     8341 ttcattgaaa aaaattgttg aaagtataaa aattatttta aaagtgggta ttgtttttac
     8401 tatagctttt atagttttgc ttaaatttat gcaagagctt ccaagagttg agctttatac
     8461 tatggttgca cagcttactt ggctaagaga tagggctatt gttttagcag ctattgttat
     8521 agttgctttt ttaattattg ctgttttaga tgtttttttg gtgcgttttc agtattttaa
     8581 aggtttgcgt atgagcaaac aagaaataaa agatgaatat aaacaaatgg aaggagatcc
     8641 tcaggttaaa ggtagaattc gtagacttca aatggaagct gcccgtcgcc gcatggttca
     8701 agatgttgca ggtgcggatg tagtgattac aaatccaact cattatgccg tagctattcg
     8761 ttatgataca agtaaagaac aagctcctag agttgttgcc aaaggagtgg attttctcgc
     8821 acttcgtata aaacaagtag cctatgaaaa taatgttgta gtttatgaaa atcctccttt
     8881 agcaagggag ctttataaag cttgtgatgt taatgatctc attcctaggg aaatgtttaa
     8941 agctgtagct gaggtgctag gatttgttta taatacaaat aataagagtc gtttagctgg
     9001 tcaagtaaaa aaaggaaact aaaactttta aggtgcttta gttcctattt tattgataag
     9061 ttcaagaact gatttttgag tgcttgtatc tgccgtatcg actttaaaat atatttctac
     9121 tctattattt tctagggctt gcggatttcc attgatggga ttattaagcc cgtagctttt
     9181 aatgctaata tttttcaaat ttgctccacc ttctataaaa tattttaata cattttccgc
     9241 tctttggtag gcgagttcat aacttcttat aatagagtcg ctattgtctg tatagcctct
     9301 aatttctatt tttgcttgag gtggcaaata tgttgttagc tcagccatac gttttaaata
     9361 atcttgtata tcagctgaaa cgatttgagc actacctctt tcaaattcaa ctttagatgg
     9421 aaggttaaga gcaacctgat tatcgctttg atctagagct gcttgaagac gtttgatagt
     9481 ttcttgctgt gtcatagtca tttgttttaa cgatttgagt tcatcgcttt cttcttttgc
     9541 tgcgccttta tatttttctt gggttttact ctcttctttg actgtttgag tagaggtgta
     9601 atcaaagatt ttaacaaatt cagtttttaa agcctctact ttagcaggat ttgttttaga
     9661 aattgcccaa agagcaataa aaagtgccaa aagcaaactt agaaagtccg cataaggtac
     9721 agcccatttt tcgcctgctg gacattctgg gcatttatgt tttttagcca tttttaacct
     9781 ttgtcaaatt gtgaaattct tggatcatcg tgacttaaga agttaaaaag tttagcttct
     9841 aaatctctag gattagcacc ttctgcaatt ccttttatag cttcagtaat gacaatttgc
     9901 tcttttacaa gatccattcc attagctttt aattttttcc cccaaggagc aaaaagtgca
     9961 taagcgccaa aaattcccgt aactgtagcc gtgaaagcac ctgaaatacc tgctgccatt
    10021 gcttgaggat tgtctagtaa tttaagagct aaaataagtc caaaaaccgc tccaacaagc
    10081 cccatggtag gacaagtctc tccaaatact atccaatatt ctgcacattc tttataatgc
    10141 tcttcaagtt gttcagtttg tatttccatg ctttcatgaa tttcttcaaa gcttttacca
    10201 tctacaagca tcatcatagc attttttaaa aattcatttt caatctcact ggttcttgat
    10261 tctaacgcta aaagaccatc tcgtcttgca ataatagcaa attcgactag ctgggctatc
    10321 ctttcgggta aatttactcc agaaccttta aaaacaactt tgagttcttt gtaggctgct
    10381 tttacaattt ttttatgcgt agaagtcatt gcgcaaaatg cagctgttgg cataactatg
    10441 agaaaggaag aaagatgcac aacatgcaaa ggattgcctc cctctagtat atctcctacc
    10501 gaaatactag taactgcaag caccattcct aatatggttg aaagatccat taatttatct
    10561 ccttgattat tttaaatcgc cccaattttt ggcgatactt gaacttgttt ttaattttac
    10621 ttttaatttt actatatttt ccataatatc tctagttttt tttacaaaat tttcacacaa
    10681 atcgtctttt acttcaaaaa ttaattcatc atgaatttgt aaaataagct ttttatcttc
    10741 atttaattcc ttattgattt ctagcattgc aagcttgatt acatctgctg ctgagccttg
    10801 caagcttgaa ttaatgcttt ctctttcata catggcaatt tgcataggtt ttgcgttttc
    10861 aaaatcaaaa taacgcttgc gaccgcttaa agtagtgata aagccatttt gtttagcttc
    10921 atttttaact gtttcaaaat attttttaat actagtaaaa ttttcaaaat atttttctat
    10981 gtaagatttg gctaaattag cttctatttt taaattttga cttaaggttt tataacccat
    11041 accataaata agtccaaaat ttatactttt tgcaacactt ctggtttcat aattgctttc
    11101 accaaaaatc attattgctg ttcttgcgtg tatatcttca tcattggcaa aagcatttaa
    11161 aagtttttca tcttcgctaa aatgtgcaag tattctaagt tcgatttgag aataatcaag
    11221 agagataaaa ctaaatccat ctttagctac aaagcaagat ttataatctt ttgcatattg
    11281 tccgtgtgca gggatgtttt gcaaatttgg atccttagat gaaagacgtc ctgtagcggt
    11341 tccagtttgt aaaaaacttg aataaatgcg tgaattttta tcttttaacg ctagttttaa
    11401 caaaggttcg caataagtgg aataaagttt ggcaagttct ctataatcta aaattttagc
    11461 aattacagga tgtttatcta aaagtatatt taaaactttt tcatcggtag aatatcctgt
    11521 ttttcctttt tttccgcttg ggagtttgag tttttcaaaa agtatatcac ccatttgttt
    11581 aggtgaattt agattaaatc tatcctcgca aagagtataa atttcttcac ttaaattttt
    11641 gatttcattt tcaaattttt tcataaggat ttcaagtgca tttgtatcaa gctttatgcc
    11701 attttcttcc atcatcataa tgattttaat gaaatcaaat tcgcagtttt tagcaagttc
    11761 taataaagga gtttcaagat tttttaaaaa ataaagataa aatcttaaag tgatataagc
    11821 atcttctgca gcgtatttac aagctttttc aagttctaca cttgcaaaat tttctccttt
    11881 tttaacaagg ctttcaaaat gcaaggtttc gtaattaaaa agtcttaagg ctaaatcatc
    11941 catatttact cttaaagaag gatttttaag ccatgccaaa atcattgtat ctgcgtattt
    12001 ttgaggtaaa tttaagtcaa aattgttttg aatgatttta aaatcatatt tgagattgtg
    12061 ccctataaca aaatgattaa agattacttc tatagctttt ttggcacttt gcaatgagat
    12121 ttgctcacct actccaagat aattatgagt taaaggcacg taaaaggctt cattttcatt
    12181 catgcaaaaa ctaaaaccaa caatttttgc ttctttagta tcaagtcctg tggtttcggt
    12241 atcaaaagca ataatacttt ctttatcaag ggtatttaaa atttcaaaaa gtttgttttc
    12301 atcttgtact aaagtggctt taaaacctaa atttttatct ttattatcag gattttgacg
    12361 cagtttttta agcaaagtat taagttcgta atgttctaaa atttcaagta tttttaaaag
    12421 aggttcttca tcaggataag tggctttttc tatgagattt tgtacttcta aattgtcata
    12481 caaagaagct aattttttgc ttaaaaatgc attttcctta ccctctaaaa gcaagttacg
    12541 acttctttcg ttacgtacta gggttaaatt ttcataaatt ccctctatgc taccaaactc
    12601 atcaagcaag gttttagctc cttttgcacc tataccttta acgcctggaa tattatcaga
    12661 actatcccca caaagagcta aaaaatctct gatttgatta ggttttactc cgtatttttc
    12721 taaacacgct gcttcatcat agtcgttttt agaaatagga ctgtaaatgc ttgttttgcc
    12781 atcttttatg agttgataaa gatctttatc ttgagtgata atgcgtacaa aaatatccct
    12841 atcttcacaa gtttttacaa aagaagcgat gatatcatcg gcttcataac cttcttgaga
    12901 aacgcttata aaacccattt tttctatcat ctttatgcaa attggaattt gttctagaag
    12961 ttcaggcggt ggtggagtgc gattttgttt atagtttgga tcaatttcac tacgaaaagt
    13021 ttttcctttg gaatctaatg caaaaacaat ataatcactt ttatattcat tttttaagtt
    13081 ataaataaaa tttgcaaaac cgctaatcat tccactagct tgtccttgtg aatttttaaa
    13141 accttttaat gcgtagtaaa gtctgaaaaa aaatccaaaa gtatcaataa ta
//
LOCUS       DAQSLY010000038        12938 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.038, whole genome shotgun sequence.
ACCESSION   DAQSLY010000038 DAQSLY010000000
VERSION     DAQSLY010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.038"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            128..1534
                     /gene="aspA"
                     /locus_tag="R2H98_000857"
     CDS             128..1534
                     /gene="aspA"
                     /locus_tag="R2H98_000857"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEE9023753.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1551..2888
                     /locus_tag="R2H98_000858"
     CDS             1551..2888
                     /locus_tag="R2H98_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEE9023754.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYARGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVVLGFVLAPMLI"
     gene            2994..4355
                     /locus_tag="R2H98_000859"
     CDS             2994..4355
                     /locus_tag="R2H98_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEE9023755.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAT
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEEQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4365..4760
                     /locus_tag="R2H98_000860"
     CDS             4365..4760
                     /locus_tag="R2H98_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEE9023756.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRAKDFRLEIKAKINLICRKDKS"
     gene            4757..5380
                     /gene="lpoB"
                     /locus_tag="R2H98_000861"
     CDS             4757..5380
                     /gene="lpoB"
                     /locus_tag="R2H98_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEE9023757.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTITKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5463..6800
                     /locus_tag="R2H98_000862"
     CDS             5463..6800
                     /locus_tag="R2H98_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023758.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINIQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAIISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6810..8012
                     /locus_tag="R2H98_000863"
     CDS             6810..8012
                     /locus_tag="R2H98_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023759.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNVLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANEATLK
                     QIANRISGDILNAIYPLKVAAVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8171..8479
                     /gene="rplU"
                     /locus_tag="R2H98_000864"
     CDS             8171..8479
                     /gene="rplU"
                     /locus_tag="R2H98_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEE9023760.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8490..8744
                     /gene="rpmA"
                     /locus_tag="R2H98_000865"
     CDS             8490..8744
                     /gene="rpmA"
                     /locus_tag="R2H98_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEE9023761.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8851..9888
                     /gene="obgE"
                     /locus_tag="R2H98_000866"
     CDS             8851..9888
                     /gene="obgE"
                     /locus_tag="R2H98_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEE9023762.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDVQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASVGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNK"
     gene            10011..10766
                     /gene="proB"
                     /locus_tag="R2H98_000867"
     CDS             10011..10766
                     /gene="proB"
                     /locus_tag="R2H98_000867"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEE9023763.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10840..11757
                     /locus_tag="R2H98_000868"
     CDS             10840..11757
                     /locus_tag="R2H98_000868"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEE9023764.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTSSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11720..12373
                     /locus_tag="R2H98_000869"
     CDS             11720..12373
                     /locus_tag="R2H98_000869"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEE9023765.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDENFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12370..>12938
                     /locus_tag="R2H98_000870"
     CDS             12370..>12938
                     /locus_tag="R2H98_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009294348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEE9023766.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSS"
BASE COUNT         4715 a         1723 c         2395 g         4105 t
ORIGIN      
        1 aatttattgt atttgaaagt agttttctta ttaaccaatt attaactaaa aatgcaatat
       61 cattatttta tgatttaaat caaaaatttt tgattttaaa ttaaaatact tttatgaaag
      121 gttcaaaatg ggaacaagaa aagaacatga ttttattggg gaattagaaa tctctgatga
      181 ggtttattat ggagtgcaaa cttttagagc tgttgaaaat tttgatattt ctcatgatag
      241 attaaaagat tttcctcgct ttgttagagc tttggctaga gtaaaaaaag ctgcagctat
      301 ggcaaatcat gaattaggtc ttttggataa aaatatccaa gatgcgatta ttaaagcgtg
      361 cgataaaatt ttagaaggtg ggtattatga tcaatttgta gtagatatga tccaaggagg
      421 tgctggaaca agtacaaata tgaatgctaa tgaagttata gcgaacatag gacttgaact
      481 tatgggtcat aaaaaaggtg aataccaata tcttcatcca aatgatcatg ttaatttaag
      541 ccaaagtact aatgatgctt atcctacggc tttacacctt gccttacatg attatttaag
      601 tgatttggca aaagctatgg aacatctaaa aaaagcttat gagagaaaag ctgaagaatt
      661 taaagatgtt cttaaaatgg gtagaaccca actgcaagat gctgtaccta tgactttagg
      721 tcgtgaattt aaaacttttg ccgtaatgat aggtgaagat atacaaagag tattagaagc
      781 tagaaaattg attttagaga tcaatttggg tggaactgct attggaacag gaattaattc
      841 tcatcctgat tatccgaagg ttgtagaaag aaaaataaga gaagtgacag gttttgaata
      901 tactgtggct gaggatttaa tcgaggcgac tcaagatacg ggagcttatg tacaaatttc
      961 aggtgtttta aaacgtgttg caacaaaact ttctaaagta tgtaatgact taagactttt
     1021 aagtagtggt ccaaaatgtg gtcttaatga gattaatctt ccaaaaatgc aaccaggtag
     1081 ttctatcatg ccaggtaagg taaatcctgt tattcctgaa gtagttaatc aagtttgtta
     1141 ttttgttatt ggagcagatg taactgtaac ttttgcttgt gagggtggac aattacaact
     1201 taatgttttt gaaccagttg tagcatatag cttatttaat tctgttgtaa tgctagaaaa
     1261 agcaatgtat actttagctg ataaatgtat agatggtatt accgcaaatg aaaaaatttg
     1321 ttcagacttt gtctataatt cagtaggtat agtaacagct ttaaatcctt atattggtta
     1381 tgaaaattca gcttctatag ctaaagaggc aatgaacact ggaaaaagag tggctgatat
     1441 tgcgcttgaa agagggcttt taagtaaaga acaaattgat gaaattttaa ctccatcaaa
     1501 tatgctaaac cctcacatgg aagctaaaaa atagcatttt aggatttaat atggatataa
     1561 tgataatttt gcaagtaatc gtccttcttg gggcgatttt tatcggtatt cgcctaggcg
     1621 gtattgctat aggttatgct agaggattag gtgtagttat attagggctt gttttaggta
     1681 tgaaacctgg taatattcct tgggatgtta ttttaattat tgccgcagct attgcagcaa
     1741 tttctgctat gcaacaagca ggtggacttg attacatggt aagggtgaca gaaaaaattt
     1801 taagatcaag tcctaaattt ataaattatt tagctccagc ttgtgggtgg ttgcttacaa
     1861 ttttagcagg aacaggaaat gcagtatttt ctttaatgcc tgttgtagtt gatgttgcaa
     1921 aatctcaaaa cataaaacct agtgttccac tttcattaat ggttgtttct tcgcaaattg
     1981 gaatcactgc ttctcctgta agtgcagctg tggtttatat gagcggcgtt ttagagccac
     2041 ttggatggaa ttatccaact ttaattggaa tttggattag cacaactttt gtagcttgta
     2101 tgcttgcagc ttttatagtg agtttaatca ctcctatgga tttgagtaag gatagtgttt
     2161 atcaagaacg attaaaagca ggacttgtaa aggatgcagg agctgttttg catggcgaag
     2221 ataaaccagg tgctaaactt tcagtggtaa ttttcttgat cactgttttg gcagttgtac
     2281 tttatgcaac cgcaatttca agtaatatta aatggattga tcctgttgtg gttccaagag
     2341 atgcagctat tatgagcttt ttgcttactg cagcaacttt gatcacttgg ctttgtaaag
     2401 ttgaaccagg taaaattctt gacactagtg tatttaaaag cggtatgact gcttgtgttt
     2461 gtgtttttgg tgtagcatgg cttggaaata cttttgttgc aggacacgaa gcttctatca
     2521 aagaagtagc aggcgactgg gttaaacaaa cccctgctat gttagcagtt gcatttttct
     2581 ttgcaagtat gcttttatat tcccaagcag caaccgcaaa ggccattgta cctgtaatta
     2641 tcactgcttt aggaatttca gcagcaaatc cgcatgattc ttatatgctt gtagcttgtt
     2701 ttgcagcagt ttcggcactt tttgtgcttc caacttatcc aaccttgctt ggtgcagtgc
     2761 aaatggatga tacaggaacg actagaattg gtaaatttat atttaatcac tcattcttta
     2821 taccaggggt tttagctatt gcaattgctg tagtattagg ctttgtatta gctcctatgc
     2881 ttatttaaat caaaccctag gtttttctcc tagggttaaa tttttttcat tagtttttaa
     2941 gtatatacta cgttataata ttcattttca attttcttta agaaaggaat ttaatgaaga
     3001 taaaagttgg gttgattttt tcaggtattg tttgcctttt tttaacagct tgtgttaatc
     3061 aggttaaaca aaatacaaca tttgaaaata ctttaacaca aaaatattgt ggtgatgatt
     3121 ttttcaatca aaatttagaa aaaattaaaa aaaatgatga tgtcatttat acaggattaa
     3181 atgcaggttt gattgctaga aattgtggtg attttaataa aagtaatgta ttttttgatg
     3241 ctgtagaaga atcttataaa tatgatgtgg atttagaaaa tgtaagccct aaagcaacta
     3301 aatttgttgg tacaaccttg cttaatgata ctatagtaga ttatgatggt tctttatatg
     3361 aaagaattat ggttaatata tataaagctc taaactatat ggaagaagat gattatgaaa
     3421 atgcaagagt tgagtttaat cgtgctttaa tgcgtcaaga taaggcaaaa gaatattttg
     3481 ctaaagaaat tgaaaaaaat cgtgctgatt tagataaggc aaaagaagat aaaaattatg
     3541 ataaaaatat gaatgaaaat tcaaaagtta tagaagagca atatgacaac ttatttaaag
     3601 aatttgatac aacaaaaaat ttcataaatc cttatgcgac ttatcttgct tcaatatttt
     3661 tctttatgga taaagattat agaaaagctg cagatttatt tagagaagta gctattattt
     3721 atccaaaaaa caaaactatc aaaaaagagg ctaaaatttt taaagaatat gccacaaaaa
     3781 taaaagtcaa aaaagctaaa aaatatgttt ttgtagttta tgaaaatgga tttggtgtag
     3841 ttaaggatga atttgcttta accttacctt ttatagtgga taaaaaaatt attagcacaa
     3901 atattgcttt acaaacctta aaaaaaaggg aagcttcttt tgcaaattta aatataaatg
     3961 gtcaaaatac aaatgatttt gtagatttag acaatattgt cgctactgaa tttaaaataa
     4021 atatgcctgc aatgattgct aaagccttag ctcaaactat aattaaaacc actttaaatg
     4081 tagctgttgc aaataatgac tctacaggtg gatggctaag tcttgcaaca gcagtagcaa
     4141 ctgctgcaac caataaagct gatgtgcgtt cttggagagg tttaccaaaa agtattgcca
     4201 tagcaacaat agaaaacgac ggaaatttag aaatcaaaga tccacaaggc aatattttgt
     4261 ttcaaaaatc attggataaa aataaaaatg ctcttgtgat agtgcgttct tttgctccgt
     4321 atttacccgc aagtgttgct atcatggaaa aataaggcta aaagatgaaa aaaaatattt
     4381 tatttatttt aatgttttta cttagtgctt gtgcaccaag ttatcaaata aattcaaatc
     4441 aaaatactgt aattttaggt tcaaatttac caaaaagttt agtaaaacaa tttcaaaagc
     4501 gtataaatag caatggttat ttagaatttg aagtgatttt acgcagtact tttgctaaag
     4561 atgtaattta taaagtggat tggttagata aagatggttt tgtgctaaga gatgttttaa
     4621 atgaggacta tcaagccctt agaattccag caggacaaga ggtaattctt cgtaaacttg
     4681 catctgatac aagagcgaag gattttagat tagaaattaa agcaaaaatt aatctcattt
     4741 gtaggaagga taaatcatga aaaaaacaaa aattttagga acagctctta ttggagcttt
     4801 gctttttagt ggttgtgcgc aaacagctta tacagatgga aaggcaagtc aggtaaaaaa
     4861 aggcgatgct ttaaccttgg gtcttgatag acaagatttt gaaagtgcag ctgaaactat
     4921 gataaatagt atgttaagcg atcctgcttt tgcaaatatt aaaccaggta caagaaaggt
     4981 tattgctatt ggtagggttg taaatgatac cccgcaaaga atcgatactg aaaaactcac
     5041 cgcaaaaatc acttctgcat taagaaaatc aggtaaattt gttctaactt cagcagttgc
     5101 tgcaggcgga gcacttgata gcatgagtga agatgtaaga gaattaagag ataatgatga
     5161 gtttaatcaa aaaaccataa caaaaaaagg gacattggta tcgcctgatt tttctcttgc
     5221 gggtaaaatt agacaagata atgtaaaact tagcaatggt aaaactcaag tagaatactt
     5281 tttcttgcta agacttactg atctaacatc aggtttagtt tattgggaag atgagcaaac
     5341 tattgataaa accggttcta gtaaatcagt tacttggtaa aataaaaatt aatttatgaa
     5401 taaatttttt tagctcaagt gtttagcttg ggcttttttt atgattttta aaaggatacg
     5461 aaatgaaaaa aatattattt atcggctctt tagttatggc aagtttactt tatgcacaag
     5521 gttcccagcc tgtagaaatt acacaacaag atataaatat tcaaaatgaa atgtctgacg
     5581 caagtactaa ggatattacc ccaaaatcaa ttgaagattt ttttgaagaa tttgccgata
     5641 atttcggtat agaatatggt ataaccaaag atggaaaaac tttttataca ggaaaaagta
     5701 ctgttgctgt aaatgatact gatccacaat ttgcacaagc tttacaaaat gcttatcaaa
     5761 aagcaatgtt aaatttacaa agcgaattta taagagatgc ttttggaaga attgctacaa
     5821 gcaagattca aaattatgaa gcagacaatt ctactaatgc taaggaattt gatgaattgc
     5881 caaaaggtga taaggttgat caaattttaa ataaacttac acaattagct ggtgctcagc
     5941 ttgataaggc attaaaagat ttaggtatag atacaaattc tttaagcgaa gacagaaaaa
     6001 agactttatt aaagcaagaa tttcttaata aaactatgac aaatgccata ggttctatga
     6061 gtggacttgt tcctgtgcaa actatagtta cacaaagaag aggtgagtat gatgtaggtg
     6121 ttattgctat tatttccaat aaaactcgcc aattagcaaa agatatggca ctagcaagac
     6181 agagtgctat taagggtaaa ggcaaggcaa taagtgagta tctgccaaaa gatacaaaag
     6241 gctttttaaa tgaatatgga attcgcttag tttatgatga aaatggtgca cctattattt
     6301 taagttatgg aaactggggt tatgtagcag atcctagcaa tgctaaaaaa acaaatattt
     6361 tagaagatag agccaaagaa acagcactta ctatggctga tgctgctatt atagagttta
     6421 ttaatacaaa tttaagtctt aaagatgaaa gaacaactgg tgatacttac gaggaaatca
     6481 tcaaacaaag tattaatgtt aatgatagtt ccactcaaga acaaactcaa aacataacaa
     6541 atattattga caaagtaaat agtaaaataa aagcaagcgc aagcggtaaa attcgtggta
     6601 ttcgtactct taaaaaatgg agctatacaa gtgaaaatgg tattgaacat gtaggagctg
     6661 tgagatttta ttcttatgaa aatttagcta acacaaatga ggctttaaat tcaaagtcaa
     6721 atgcaacaaa aaatgaagct aaaaaatctt ctagcataca aagaagttct aatgttgtaa
     6781 atagcatgga tgatttttaa aggtaaaaga tgaaaataat taaaattctt tttttaggct
     6841 tatttttaag cctaagtctt aatgctaaag ttataaccac aacttcaaca aaatcaagca
     6901 caggtgaagg cacaggcttg actagggaag atgcgataaa caatgccatt atagaagcta
     6961 taggaaaaat gagtggagta agcatcaatt ctcttaagaa atctaacact agcgtttcaa
     7021 ctgataattc aggttcaaat atacaagata attacagcga gcaaatttca aaagccacca
     7081 aaggtagagc tgatacttat gaaatcaata gtgttgaaca agatgcaaat ggtaaatata
     7141 cagccaatgt aacgattttt aaaaccacaa caacaaaaaa gtatcaagct ccaggtttaa
     7201 gtgcagataa tagaagaagt attactgttt ttgattctac tccagatgct gcaaaaagag
     7261 gtataggctc agctttgcaa caaaaaatca tttctgattt attgcaaagt cgtaaattta
     7321 atgttttaga ccgtgattct agtggctatt atgaaatgga aaaagcttta atcaaaagtg
     7381 gcgacgcagc tagcgatgaa gtttataaac ttaaaaatgt gttagcaaca gattatattt
     7441 tattgttttc tatttcagga cttgaaggta aacaaaaaac aagcaattta acaggaaaaa
     7501 gcaaaactga aattgaagtt atcgtagatt atcgtgtgct tttatttgct acaagacaaa
     7561 ttaaattttc taatacttta agcatgaaag tcaatcttaa agacaatagt cttagtgcca
     7621 atgaagctac actcaaacaa attgcaaacc gcatttcagg agatatttta aatgcaattt
     7681 atcctttaaa ggttgcagct gttgaaaaca atgaagtaat attttctcaa agcttaaatc
     7741 aaggtgatgt ttatgaatgt tttgctcttg ggaaggttat aaaagatact tatacaaaag
     7801 aaaatacagg aagagtagaa agcaaaacag gaagtattga aatcactcgc acaagcccta
     7861 aattttctta tgcaaaaatc acagaaggta gtgtaaaagt gggcgatatt tgcagacctt
     7921 taagtaatac tggtagtgga aatggctaca ctataggtcg tgatgcaaat tatcaaaccc
     7981 aagaaggcgg cggagtaaat ctaggctttt aaatttttag agtttgattt ttctcaaact
     8041 ctaaactctt tcttaaattc atcaaaaatt aaagaaaaat tttgtaaaat cgaaatttta
     8101 ttaaaccact aaagctttta aatccgttat tacggtgctt tatggtacta ccaatttata
     8161 aggaaaagca atgtatgcta ttatcaaaca cagcggaaag caatacaaag taagtgttgg
     8221 cgatgagcta aaactagatc actttgaagc tgaaagcaaa gcaagtattg aagtaagcga
     8281 agttcttgct atcaatgata aagaattaaa ggtaggtgcg cctttcgtag caggtgcaaa
     8341 agttgttttg gaagtgatca atcacggaaa agataaaaaa gttgtgattt acaaaaaaag
     8401 acgcagaaaa gattctaaac tcaaacgcgg ttttagaaga caatttactc gcgttgtagt
     8461 aaaagatatt aaagcttaag gagtaaagaa tggcacacaa gaaaggtcaa ggttcaactc
     8521 aaaataaccg cgattccata ggtcgtcgtt taggtgttaa aaaatttggt ggcgagtttg
     8581 ttagagctgg aaatattatc atccgccaaa gaggaactgc aactcatgca ggtaacaatg
     8641 taggcatggg aaaagatcat actatctttg ctctaattga tggttttgta aaattcgaaa
     8701 gaaaagacaa agatagaaaa aaagtttctg tatatcctgc ataagttttt aggacgcttt
     8761 ttagcgtctt gaaaacttta aatttataaa tttaacttct tttatttact caaatttagc
     8821 tttataaatt taaagtcaaa ggcaatttaa atgtttattg atagtgttaa aattacttta
     8881 gcttcaggcg atggtggcaa aggtgctgta agttttcgcc gtgaaaaaca tgttccactt
     8941 ggtggccctg atggaggaga tggtggaaat ggtggtgata ttattttcgt atgtgataat
     9001 aatacccaca ctcttgtaaa tttcaaaggc aaaagagaat tacgcgcgca aaatggtgct
     9061 ggtggaatgg gacgcaataa aaatggcaaa aagggtgaaa atttagaact tatagtgccc
     9121 gaaggaacgc aagttatcga tgtacaaacc aatgaaattt tacttgatct taccaaagaa
     9181 ggacaaagag agcttttttt aaaaggtgga aaaggtggac ttggcaacac ccattttaaa
     9241 cacgccacca atcaacgccc cgattacgca caacctggta taaaaggaga aagtcgctta
     9301 gtcagacttg aacttaaact tattgccgat gtagggcttg tgggctttcc aaatgtggga
     9361 aaatctactc ttataagcgt tgtttcaaat gcaaaacctg aaattgcaaa ttatgaattt
     9421 accaccctta ctccaaaact tggactcgta gatgtagatg agtataattc ctttgttatg
     9481 gctgatattc cagggattat cgaaggagca agtgtgggta aaggcttagg acttgccttt
     9541 ttaaagcaca tagaaagaac gagcttttta cttttcgtgc tagatcctat gaggcaaatg
     9601 cctttaaaag aacaatttat agtactaaga aaagaacttg aaaaattttc caatgaactt
     9661 tttgggcgta aatttggcat catgatttca aaaagtgata gtgttcgttt aggagaggaa
     9721 tttgctgagc aaattgcttt aaacattaat gagttagaca attatctcaa agaaataaat
     9781 aatccacaaa gctttttaat caaagtctca agccttgaaa aaacaggact taaagaactt
     9841 aaattcatgc ttttagaaga aattaaaact ttaagaaata acaaataaaa attttaacaa
     9901 tctaggaagt gttttatatt aaaaatttca aacactccct attttttcaa aaaataacta
     9961 gtttatatga aattttggct aaaattataa aaatttttca aggaataagc atgaaaagaa
    10021 tagttgttaa agtgggttct catgtgatta gcgaagaaaa cactttaagt tttgagcgtc
    10081 ttaaaaattt agtcgcattt ttagctaaac tcatggaaaa atatgaagta attttagtaa
    10141 cctcggcggc tatttcggca ggacacacca aactagatat cgatagaaaa aaccttatta
    10201 ataaacaagt tttagctgct attggacaac cttttttaat cagtgtttat aacgagcttt
    10261 tagccaaatt taacaaacta ggcggacaaa ttttacttac aggcaaggat tttgactcta
    10321 gaaaagctac caaacacgca aaaaatgcta tcgatatgat gataaattta ggaattttgc
    10381 ctattatcaa tgaaaatgac gctacagcta tagaagaaat tgtctttggt gataatgata
    10441 gtttaagtgc ttatgctacg catttttttg atgcggattt gcttgtgatt ttaagcgata
    10501 ttgatggatt ttacgataaa aatcctagtg aatttagtga tgcaaagcgt ttagaaaaaa
    10561 tcactcatat taaagaagaa tggctacaag caaccataaa aacaggtagt gagcacggaa
    10621 caggtggtat agtaaccaaa cttaaggcag ctaaattttt acttgaacac aataaaaaaa
    10681 tgtttttagc aagtggcttt gatttaagtg tggcaaagac atttttatta gaagataaac
    10741 aaataggtgg aactttgttt gagtgattaa tttattaaat tctcttttaa aatcaaataa
    10801 gctataatta aaacttttaa tttcacacaa agcgaaaaaa tgaaaaaaat tatttttatg
    10861 ggcactccat cttacgcaac ttgtatttta aaagcactag tagaaaatga aaattttaaa
    10921 ctcgtagcac tttttactca gcctgataaa gccgtaggta gaaagcaaat tttaacttca
    10981 agtgatacta aggctttttt aagtcaaaat tatcctagta ttcctatttt tactccaagt
    11041 tctttaaaag ataaaaatat tataagagag attaaggatt taaatcctga ttttatcgtt
    11101 gttgctgcct atggaaaaat tttacctaaa gccattttgg atttagcgcc ttgtgtgaat
    11161 ttgcatgctt ctttacttcc aaaataccgt ggtgccagtc cgatccaaag tgcgatttta
    11221 aacaaagatg aaaaaagtgg agtttgcacc atgctcatgg aagaagggct tgacacaggt
    11281 gctatacttg aaagcttaga atgtgatata aaagataaaa attcaagtga agtttttgaa
    11341 cttttagcaa atttggccgc taagctcatc ctctctactc ttttaaattt cgataaaatc
    11401 acccctaaaa aacaagagga aagtctagca acactttgta gaaaaatcaa aaaagaagat
    11461 gggcttataa atttgcaaaa tgcaagagaa ctttatcaaa aatatctagc tttcacccct
    11521 tggcctggag ttttcttgga aaatggactt aaattcttag aacttgaact tgtggatgaa
    11581 ttaaaacaaa atgctaagat gggtgaaatt ttagaattag aaaaagaaag ttttttgctt
    11641 gcttgcaaac aaggagtttt gcgtattaaa aaacttcaag aaagtggaaa aaaagctctt
    11701 gatggcagga cttatttaaa tggaaaaagg cttaaaagtg aagatagttt gtgttgaaag
    11761 tatagactca actcatcttt ttttatgcga gcaaatacgc aatggaaaga ttgatgaaaa
    11821 ttttgctatt tatgctttag aacaaacaaa tggagttgga agtagggaaa attcttggca
    11881 aagctctaaa ggaaatttac atctttcttt ttgtattaaa gaagaagatt taccaaaaga
    11941 tttaccttta gcttctgtga gtatttattt tgcttattta cttaaagaag ttttacaaga
    12001 aaaaggttct aaaatttggc ttaaatggcc taacgatcta tatttagatg ataaaaaagc
    12061 tggaggagtt ataagtgcta aaatttcaaa ttttatcata ggcggtatgg gtttaaatct
    12121 taaatttgca ccccaaaata cagctttatg cgatatagaa atttcgctta aagatttagt
    12181 gagtgagttt ttgcaaaaag tagaaaaaaa aattttatgg aagaatattt ttagcaagta
    12241 tatgttagaa tttgaaaaat caagaaaatt tagcgtccat catgaaggta aagttttttc
    12301 acttgaaaat tcttttttgt acgaagatgg ttcaatttta ctaggcgata aaagggtgta
    12361 tagtttaaga tgagcgaaat tattacaata gcaaatcaaa aaggtggagt aggaaagact
    12421 acaacagcag taaatttagc cgcttctttg gctgtggctg aaaaaaaagt acttttgatt
    12481 gatgttgatc cacaagctaa tgcgactaca gggcttggtt ttaatcgtaa taattatgag
    12541 tataatattt accatgtttt tataggaaga aaaaagcttt cagatattat tttaaaaaca
    12601 gaattgccac aacttcattt agctccttca aatataggtc ttgtaggtat agaacaagag
    12661 cttgctaaag gtgaaaataa tgagaaaaaa atgttactta aaaatcaaat tcaagaagta
    12721 attgatgagt atgattttat tattattgat tctccacctg ctcttggaag tattactata
    12781 aatgcttttg cagcaagtga tagcgtaatt atccctatac agtgtgaatt ttatgcgctt
    12841 gagggtgtag ctatggtttt aaatacaatt aaaattatca aaaaaactat taattctaaa
    12901 ctcagggttc gtggattttt accgacaatg tatagctc
//
LOCUS       DAQSLY010000039        12920 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.039, whole genome shotgun sequence.
ACCESSION   DAQSLY010000039 DAQSLY010000000
VERSION     DAQSLY010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12920
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.039"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            11..556
                     /gene="nadD"
                     /locus_tag="R2H98_000871"
     CDS             11..556
                     /gene="nadD"
                     /locus_tag="R2H98_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEE9023767.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            584..910
                     /gene="rsfS"
                     /locus_tag="R2H98_000872"
     CDS             584..910
                     /gene="rsfS"
                     /locus_tag="R2H98_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEE9023768.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(941..1318)
                     /locus_tag="R2H98_000873"
     CDS             complement(941..1318)
                     /locus_tag="R2H98_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEE9023769.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(1365..2735)
                     /gene="pgmL"
                     /locus_tag="R2H98_000874"
     CDS             complement(1365..2735)
                     /gene="pgmL"
                     /locus_tag="R2H98_000874"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEE9023770.1"
                     /translation="MLDVIFREYDIRGLYGKELNKKSVKAIGFCLGKTMLNKGCKNVS
                     VGYDARYSANELFNYLISGLNKAGIKIYDIGLAPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGVAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            2858..3394
                     /gene="fliL"
                     /locus_tag="R2H98_000875"
     CDS             2858..3394
                     /gene="fliL"
                     /locus_tag="R2H98_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEE9023771.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPAQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            3394..3741
                     /locus_tag="R2H98_000876"
     CDS             3394..3741
                     /locus_tag="R2H98_000876"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEE9023772.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAVV"
     gene            complement(3742..4161)
                     /locus_tag="R2H98_000877"
     CDS             complement(3742..4161)
                     /locus_tag="R2H98_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023773.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(4158..5519)
                     /locus_tag="R2H98_000878"
     CDS             complement(4158..5519)
                     /locus_tag="R2H98_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEE9023774.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDKVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFGKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEGKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGVVEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(5516..6637)
                     /locus_tag="R2H98_000879"
     CDS             complement(5516..6637)
                     /locus_tag="R2H98_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEE9023775.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFSIKVDLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLRKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(6710..7894)
                     /gene="kpsS"
                     /locus_tag="R2H98_000880"
     CDS             complement(6710..7894)
                     /gene="kpsS"
                     /locus_tag="R2H98_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEE9023776.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAMKMKKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(7891..9961)
                     /locus_tag="R2H98_000881"
                     /pseudo
     CDS             complement(7891..9961)
                     /locus_tag="R2H98_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
     gene            complement(9958..10470)
                     /locus_tag="R2H98_000882"
     CDS             complement(9958..10470)
                     /locus_tag="R2H98_000882"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEE9023777.1"
                     /translation="MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(10460..11221)
                     /locus_tag="R2H98_000883"
     CDS             complement(10460..11221)
                     /locus_tag="R2H98_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEE9023778.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVYTFFCAKDFMLKCIEEKQ
                     DLIISYADIIYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKTNAHDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK"
     gene            complement(11223..11825)
                     /locus_tag="R2H98_000884"
     CDS             complement(11223..11825)
                     /locus_tag="R2H98_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEE9023779.1"
                     /translation="MFIGITQRLICNDSYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHMSPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAEDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(11816..>12920)
                     /locus_tag="R2H98_000885"
     CDS             complement(11816..>12920)
                     /locus_tag="R2H98_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023780.1"
                     /translation="KAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPFAGVARA
                     AFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFLKDFGHL
                     RAGTYNILSPRYDEDFELYFDADQKDSKVYLQDKAFVFSEEKTRALNALLKEHGLEIN
                     ACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYDIEKEDLAHLDIKSILNL
                     YSSLYSINPKEQFIEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIPNFITQK
                     SITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAIRASELG
                     MPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
BASE COUNT         4469 a         2221 c         1594 g         4636 t
ORIGIN      
        1 taaaatttta atgaagatag cactttttgg tggcagtttt gatccaccgc ataatggtca
       61 taatagcgtt gttttagagg ctttggaaaa attagatatt gataaactta ttattatgcc
      121 tacttatatc aatcctttta aacaaagttt tagtgctgat gaaaagcaaa gattcttatg
      181 ggttaaaaaa ctttggggac atttgccaaa agttgaaatt tgcgattttg aaatcaggca
      241 aaaacgccct gttcctagca tagaaagtgt taagtatctt tataagcttt ataatcctag
      301 taaattttat cttttaattg gcgcagatca tttagaaaaa cttcatcttt ggcatgattt
      361 tgaaaaactc aattctttag tagaatttgt tattgccaat cgcaatgata taggaattcc
      421 taagaatttc aaagatttaa aaaccaataa aaaaatcgct tcttctttca tacgcgacac
      481 tttaaataca aatgaggttt gtgaagaaat taaagatgaa gtaaaaaaat attatgaaaa
      541 attacaaaaa aattgataca atttcaaaaa ttaaaggaca ataatgcaag aaagaataga
      601 tttaatcgtt aaaattttag atgaaaaaaa agctgaaaat atcaaaacca ttgacatgag
      661 cgagcaagaa tactttgtaa aatatgtcat tattgcagct actttaggag aaagacacgc
      721 tctatccttg atcgatgagc ttaaaacaca acttaaagcc aaaggtgagg aatttttaaa
      781 catagatagt agcgaagaat ggagcgtgat tgatcttggc gatattttaa tccatctttt
      841 aacaccagaa cacagaggaa tttataatat agaagaatta ctagaaaacc ttaaaaaagg
      901 tagggtttaa aaaagctaaa tttaattagc cttttaattt ttagagatta tcaatatatt
      961 ctttaatttc ttttttaatt ttctcttttt gttcttttaa agcttctttt ttagctttat
     1021 actcagcctt actcatataa tctttttgtt ctttcaaggc atcaagttct ttttcgattt
     1081 tttccacttc ttgttcttta agttttttag cttctaactt tttatcataa aacataggat
     1141 ctttagcaca atcattttgt acttgtttta aagcaagctc taagcttaaa gttctagctg
     1201 tatcattatg cgctttagaa aaactgattt ctttattgat acgatcgatt tttctatcac
     1261 attcacttgc accaaaagca aaagcacata gtgtaagtag aataagtatt tttttcattt
     1321 ttaattcctt tttaaaataa attaaatcgc ggaatattat ctcatcaatt cttaaatcta
     1381 gcttttatat cattaaacaa agtaaatacc atactttcaa gctcttttgc tctttctaaa
     1441 gatgttgcct caaagcgtgt gataagataa gggctggtat tagatgcacg aagtaaagcc
     1501 catccatcgc caaaatctat cctagctcca tcaatttcac aaagactttt aacacctttt
     1561 aaagctcctt tttcaatctc tttttgaaat tcttccacaa gtttgaattt ttcttcttca
     1621 tttacaggaa ttttaatttc aggtgtagta taaagttttg gtaaagcttt aatcatactt
     1681 tctagatcaa aacctttata aacaagctcc aaggctctta aaaatgcata aattccatca
     1741 tcataaccaa aatatctatg tttaaagaaa atatgcccac tcacttcagc agctaaatca
     1801 atatcttttt ctttcatcat ttttttgata ttagaatgtc ctgtttttcc cataaaaata
     1861 gttccaaatt tagccacttc atcaaaaaga tttttagaac attttacctc acctaaaatg
     1921 cgtggattag ggatatcttt agcaaacaaa taacaaagct catccccaca aaatacatga
     1981 gttttactca aagcaaccat tctatcagca tccccatcaa aagcaaaagc taaagaataa
     2041 tcttgatttt gatttaaaaa ttctctaatc gcacttaagt tttcttcttc tgtaggatct
     2101 ggagcatggt ttggaaactg tccatcaggc tctgcaaaca ttacatgagc ttttaaattt
     2161 aaagccttga ttaaaggctc tatcaccact ccagccacac catttgtgca atcaacacca
     2221 aatttataat taaaatcctt taaaaagcta aattgctcgc acataaattt cacataaagg
     2281 tttaaaatat cgtatttttc tacttctaaa ttttcttcaa tatcatcatc taaatgctta
     2341 taaacttctt ttgaaaactc ttttaattct acaccaaaaa aactttcttt attaatagta
     2401 attttaaaac cattataatc ttttgggtta tgagagcctg ttatcataac atttgcatca
     2461 aatttcaagc cctcataaag actaaaatat cccaatggag ttggcgcaag ccctatatca
     2521 tagattttta ttcccgcttt gttaagtccg ctaattagat aattaaaaag ctcatttgca
     2581 ctatatcttg catcatagcc cacgcttaca tttttacagc ctttatttag catggttttt
     2641 cccaagcaaa aacctatagc cttaacactt tttttattta gttctttgcc ataaagccct
     2701 cttatatcat attccctaaa aatcacatct aacatttttt tccttcaaat tcatctcttc
     2761 tttaacctaa aatttatcgt ttttctaaag caaatttgga tagaaaagaa atttttgcta
     2821 caattttaca ttaatttcac taaatgaagg aaaatttatg gatgaagaat tagaaaacga
     2881 agaaacgaaa aagaaaaaag gcggttcact tgtaattatt attgttattt tactttttgt
     2941 tttacttctt agtattatgg gagtaattgc ttggcttatt tcaagcagtt caagtgatga
     3001 aagtgaagtc aaagaagctc caaaagaaga ggcaaaagcc gataaaccta aagtttcagc
     3061 tcctgctcag cgaggtagtg attttgctaa tataggtcct atgtatccac ttgatccttt
     3121 taccctaaat ttacttagcg atagcggctc aagatatgta aaatgcacta tagaactaga
     3181 acaaaatagc gaacttttaa aacctgaact tgataaaaaa gtcccagtca ttcgtgatat
     3241 tattattcgt acattaacag ctaaaacttt tgaagaagta agtacacaaa aaggcaaaga
     3301 acgtttaaaa gatgagctag ttggaaaaat caatgaaatt ttaaccgatg gctttattaa
     3361 aaatgtttat tttacggatt ttgtagtttc ttaatgcgtg taggctgtga tatcatcgcc
     3421 atttctagaa tagaaaaaat tcattctaga catggcaaaa attttttgga taaatttcta
     3481 agcccaaaag aacaaatact cattaaaaat ccagcaactc tagcaggtct ttgggctgct
     3541 aaagaagccg ctagcaaggc tttgggtgtt ggaatttgtg aattatgcag tttttttgat
     3601 attgaaatat caaaagatga aaaaaacgcg cctaaattaa aatattctca aaaaattaca
     3661 aaagatttta atatcactca aacttcccta agtatttctc atgataatgg ttttgctata
     3721 gccatagtgg ctgtagtttg attattttcc tatagtttgc ttgtctaaat ttcttgaaag
     3781 tatgaaatcc accacaggtt gttctctttt gtttgctctt ttacaatgat ctttttgaaa
     3841 aaaatctgtg atttttataa caatccttgc ccattttttg cgatttcttt cacgccacgc
     3901 atgagaagaa acgctctccc aagcatagcc attaaacaag cttgcattta caaaatgatc
     3961 taaggctcta acaccctgtc ttgctcgtgc ggtattaaaa aaaattccta taatcacgat
     4021 aaaaagatat cctaaaactg ctaaaggtac tattgcacaa agcagaatag tccctgctaa
     4081 tttttctttt aagcttcctt ttaaagtgcg ttttacacga cgacgaaaat tggcgcgaat
     4141 tttagttcta actcttttca tagctttctt ttgctaaatt ttatcctcat accattagcc
     4201 gaacgcactg ttaaacgccc tactacatca ggtacaaaac cttcttcaag ttctagtttg
     4261 taagttttta aaatattagc caaaatcaaa atcgcttctt gcatagcaaa accttgtcct
     4321 atacaaattc tttcccctac cccaaaaggc aaataagcat cttttttgta ctctccttca
     4381 aaacgagaag gattaaatcc atgcggattt gtccaaaatt cttcatgtct gtgtatcagc
     4441 caaggagcaa tcaccacccc agaacctttt ttaataagct tatctctaac ttgggtatct
     4501 ttttttgcct ctcttgcaaa aaacccaaca ggaggataaa gtcttaaaga ttctttaaaa
     4561 atatttgtta agtatttaaa ctgtcttaga tgcgaaattt caacgactcc accctgtaaa
     4621 acctgagtaa tctcctcgta agctttttct tgctccttag gataaagact aagcaaataa
     4681 agcgtccatg tcaaagaact tgctgtggtt tcatgtcctg ctaaaaaaag catagccact
     4741 tgatctaaaa tttcctcaaa agaaaaacgc ttatttgtat cagcatccac tactaaaagc
     4801 aaagatccta aaatatcttc aaattctgca ttatctgcca tatcatatct tggttttatg
     4861 atatcactta aaacctgtct gatcacatct ccggctttag cacgcttacg atctcctagc
     4921 acataagaaa gccattttgg aaaacgaaac atacgacgca tggctgtatg cacgctttgc
     4981 tcttgaaaag tcacaaaggc gtttaagatt tttttacctt ttccctcatc gagttttgaa
     5041 gacataatgg tgcgaaaaat cacatcagcg gtaataaaag tcatagcttc atctacttcg
     5101 ataacagcat gatttggata cttgccaaaa cgatccatca tatctgccac agcttcactc
     5161 ataagattaa acactttatt gatacgagtc atttcaaaac ttggacgcaa aagttctctt
     5221 tgttttttcc aaacttcacc atttgtagta aaaatactct cccctaaaag cggacttaaa
     5281 agctcatgta aaaatgcact tttaggaaat tctctaacct tatcaaccat cattctttta
     5341 acttctttag tatcatttat gacataaaga tcaaaatttg gcatcttcac atagcctgtt
     5401 tgcattttat aactacgctc ataaagcccg tcaagccaag atctacgctt taacaaaaaa
     5461 gttaagagcg tagaagcttt atttttataa ggttttggaa aaaaggggca ttcactcata
     5521 tttttacctt ttcttctaaa aatttaggca ttatgatgaa agaaaaaaaa tcataatcac
     5581 ctttaacact aatactataa agatataaaa agtgcgcttt gtttttatct ctttttattt
     5641 ttttatactc atgtttttca tataaagtgt gaaatttagc acttaaaaat ggaggtgtaa
     5701 atttagcatt tacgccactc gtgcggaaaa aatccacttg aggaaaacat gctccatcaa
     5761 taatcgatgt gtaatcatac cattttaaat caaaccttga aacaaattca agcttctttc
     5821 taaattcatc cgcttttttt tgataactca ctaaaggaat gcattctcct aaagtaagaa
     5881 tttttaattt acgaagtaaa gataaatcta aattttgtct taaaatacac tccaaaactt
     5941 ctatacaaac tatagttcca acactatgtg ctactaaaac aagttcataa tcttgtttat
     6001 tttcattttg ttttagctta tctactatgg tatttgcaaa aagcttgatt ctttcttgca
     6061 tagtgcctgt ttttttatct tgccaagtag cacaaaaagc acaaattctt gctatccaaa
     6121 atacagctaa tttcttacct aatttaaata aaaaatgatt tagtaaaaat cctaaaaaac
     6181 atcctatgat gatagctaaa gaaaaatgca tataattttg caaaaaagca aaacttccaa
     6241 aagccaaaac caaagaaaat agtaaagaaa ataacacata aaaaaaagga taataacctg
     6301 tgataagttg ataaatcgac tctttgccaa atttgataaa aagccctgtg atagtataaa
     6361 ttctaaaaaa actataacaa tctgccaaag catctttata attttctgac caatttttct
     6421 taacaatatc attccatgtt aaaaaatgat atttagtttg tactccttcg caagaaattt
     6481 gaaaaaaagg aaattgctca tttttttcaa ttttacttaa atcaacttta atgctaaaag
     6541 catgagaata atcttttagg ttttttttaa ataaatcata ataaaatcta taacttttag
     6601 gatcatatcc tgctatataa aatacttccc tatccataca ataatttctt tttgctttta
     6661 attataacaa ctttgcttta aaagctctct taatcaaagc tttttagtct tatttgtcta
     6721 aaaagaaatt tttataaaaa ttgccgttga attgattagt ttgtaaaaga tattttttaa
     6781 aattacatac caaaacagga ttgggtttat aagcatgagc ttcacgccaa aaaaattgaa
     6841 gtttttttgg ataagataag ccttcaaaat cataaaaagc attgccacaa accttagtcg
     6901 gacagccttc taaaatagca ctaaggccta ctgttgaatt tatagtaata caacccaaag
     6961 cctttcttaa aagaactggc aagtgggtat catgaacata taaaaccctt ccttctacat
     7021 gatatttttg acttaaatca tttatgagtt tagaataatt cttatagccc ctatccatgg
     7081 gatggtgttt aaaaactaga taagatttag ctcttgcatg gtttgcaaaa gaaagtatgg
     7141 tttcctctat aaagtgctct atgctttttt tgtaatgata tttaatttgc gtatcgctat
     7201 aaacttgtaa aatcgccaaa aagtactttt tttctaaatt ataaatcttt tcatttagtt
     7261 ttttttctgt aatcttataa agatactttc tatacaatga tctaaaccaa aataaaaatt
     7321 caaaaggata taaagtgcga tgatgaagtt tgttgttaaa aaatggagcc aaaataaaag
     7381 caaacaacca atacaaaaaa gcatcaaaag ccataaattt aaatccacct ggaatttctt
     7441 ttatactttc tttggtaaaa atattttgag aaagataaaa atttttatca cgcggtaaag
     7501 aagaatttgc attcacccca tctttttcca aagtaataca ataaggcctt aaatatcctt
     7561 cttcaaaaat ccatatttca attcctaatt ctttagccac tttaatagcc ttagcatgta
     7621 taatgcgaca atcattatac attaaaatag catcgatttt tttattttga aaaaaatctc
     7681 tatagaaatt ttcaagatct ttttcatcac acttacacct cgttccacta ggatagaaaa
     7741 aaaaatctcc gccgttaaaa ttgagtttaa aaactttggt ttggtttttt ttcattttca
     7801 ttgcaagatg atgaaaaaaa tttcccacag gtccttgcaa gagtaaaaca tttttaccgc
     7861 taaattcttt tttaatttta gtgctaaatc tcatttcttt gctaaaaatt cataaaatct
     7921 tcttattttt ctaagcataa aagttttaaa atctattgcc aattttatat atttttttga
     7981 aaaataagct ttttgtaaat ttagcattat atctaaacaa acttcaattt cacataaagt
     8041 ttttgtttta ggatttatat atcttggata tatgatcaaa gcacctgcta caagctcttc
     8101 taggcttagt tttcttgttc ttctttcgca tctatattta tcttttgtta aaccccagcc
     8161 cgcataaaaa ggcatgccat aagtaaaaac ttttttagct cttaaaagag catcaaaacc
     8221 acttgtagaa gtaatagtgt gaatttcatc agcaattttt atagcgctat caatactgca
     8281 atcttttaca atctcatcac aaaattccaa gatgagtgtt tcatctttta aacctacacg
     8341 gttgccgctt aacacatcag gatggggttt aaagatgata taagcatctt gatttttaga
     8401 acgcacctcc ttaagcaaat caagagtaga taagccaaaa ccccctaaaa tcatcgaagc
     8461 atcatcttca acttgagcag ggattaaaat aatcttttgt cctattttgg cattgatttt
     8521 taagtcttca tgctttaagc cattgtattt tgaaaagcgg ttctcaagta agatttttat
     8581 aatatttttt gccctattta gcatattttc atcaaaaatt tcgttttgca aaagctcttc
     8641 taatttactt gctttatttg gatctatgta aagtccttta tcatcaacga ttaaagaaaa
     8701 agggcgcgta agatcagaac ctaaagagat tgagcgaata aatccatctt caactaaaga
     8761 aattttggga gtaaaatgga gcaaattctc atcttgcgct ttttttataa gagtagtttt
     8821 aagagcgtta taatctatcc ttttacccca aatgaaaaat ttatcatttt ctttaagttt
     8881 atatctagct aaagatttta aagaatttaa aaaaataatt ttattatctt tggccttaaa
     8941 aaaaggcttg ataaaatgcc ttttccataa ggtaaaacct aacataaaaa gcttgttaga
     9001 atttaccttt tctatatctt tatattttgc taaagtttga atagtatcaa aaatattact
     9061 tttttgattt aaataaggat taaaatactc gctataaagt atataagcag catagaaaac
     9121 ttcttctaaa cttctttttt gcatccttct tttacgctct aatttatctt ttgttagacc
     9181 ccaacctgca taaaaaggca taccataaca aatacactca cattcttgca tcaaagcttc
     9241 aaaacccata ccagaagttt tggtataaac cttatcaaaa aactcaagta aggctatggg
     9301 attaaaattt tcagtaatta aaatacattc tttaggtaag gaatttatat ctaaatcact
     9361 ttgtttttta ccgcttaaaa catcaggatg gatttttata taaattttag atttaggatt
     9421 ttcttttatg gcatctttta tcatatcgac ggttttaaaa cctttagcaa gcccaaattc
     9481 aagcgaggca tcattggccg tttgggtgat gattaaaacc cttttttcat ctttttgaaa
     9541 ataatcatct ggaatatcga gattgttatt atacttgcta attttatatt ttttgataag
     9601 ctctatagct ttttttagct tgcttgattt cttcatcttt aaattcacaa gtatttaaaa
     9661 gattttcaag ctttgaaggc attgttgcat cataataaat gcctatatca tctttaacca
     9721 tagaaaaact tgggctattt tcaaccccta agtttaatga gcggataaat ccatcttcta
     9781 aaagtatgaa tttagcctta tattttttag ctaaattcat agcttttaaa cctgattttt
     9841 tgcgtcccca accaaagaaa agatcatctt ttttgatttt taaatttttc ttatacaaag
     9901 aaatagtata aaaatttcta gcattagcaa taagtttttt tgatattgag taatgcttca
     9961 caatgccaat ttctttatta taagttcaac tttttcttct aaattatttc gacaagaatt
    10021 atcaatcact aaatcagcct ctggtttatc aaattctata tcaacaccaa ctacattatc
    10081 aatttcttta tttaaagcct tagtataaag ccctttttga tctctttgca ttaattcatg
    10141 catatcgcat tctatataaa tttcataata attttttaat tgctttctat tgtaatcata
    10201 aatctcatta aacattgaaa tcgtagtgac aataactatc ataccttgat cgtttaaaaa
    10261 ttttgcaaat ttagctcttt tcaaagccat atctatgcga ccttgtttat cgtatgcata
    10321 atgtcctaat atttctctta actcatctcc atcgagataa ataagatttt tatattttag
    10381 ttttaatttt tcatacaaag cttgacctat agttgttttt ccgcttccag ctaaaccagt
    10441 aagccaaata atataaggat tatttttcaa tttgcacctc taaatcactc ataaaatcaa
    10501 tttcacacca attgccatca atttccactg cttttgcgtt gttatatttt tcaattaaag
    10561 cctgcaaaaa acttgtcata tacatatttt caaaattttt attatcatat aaaatatctc
    10621 ggtcaagcat ttcataaaaa gcaataactt cggaaagaaa ttgataagaa aatttaaaaa
    10681 gtcctatata ttgagcttct atctcatcat gggcattagt tttttttcca agttctataa
    10741 tataaccatt tgtcatcttt aatgtttcag catcttctaa aggatttgca aagcgtttgc
    10801 tccaaagctt acgccaagac ttatcaacta ctatagcaag ttcttctttg gcatttataa
    10861 gcttttgcac gcaatcttga aaataaataa tatccgcata agaaataatc aaatcttgtt
    10921 tttcttcgat gcattttaac ataaaatctt tagcgcaaaa aaaagtataa accatattgg
    10981 ttttatcata ttttgaatta ataaaaaaat gctcaatatc atatttatta agataatttt
    11041 ttagcacatc gtttaaatat ccacccacaa cagctatttc atttatacct gctgatttta
    11101 aagcttcgat ttcataatct attatttttt tattcttata ctcaaccata cactttggtt
    11161 gatcttttgt taaaggcatc agccttgatc caaaacctgc tgctaagata attgcattca
    11221 tattattcct tgattaaact aaaccactct cttaaaattt gaatattatt aagcccattt
    11281 tctctttcaa tatgccacat tataccaaaa atattttcat acttatgctt aaaagcttct
    11341 atggtattat cttctgctaa gcaaagttct acaagatctt cgcctaattt ttcaatagca
    11401 aaattatgaa aagaattgct tataaatttt tcttttgaga aaaatacttc atgtttgcct
    11461 atatgatttt cacaaggact catatggctg ttaaaataat gagctatcat ctgagcccct
    11521 ctgcaaattc ctaaaagtgg tattttttct tctaaacaaa tttctataac ttgcttttca
    11581 tataaatctc tctttttgga taaaacatta ggactataaa aacttaaatc attgccacca
    11641 cttaatatca cagcttttat tagatgttta taataagaaa aatctatttc atagctaaga
    11701 ggaagaggag taaaattttt aaataaatct ttattaaata attttcccca atccaaagcc
    11761 aaacattctc tttcttcatg ataactatcg ttgcaaataa gcctttgagt aatacctata
    11821 aacaaaatat ttgctcactt tcacattcta tattgatttt tttagctttt aaatattttt
    11881 caaaattttc ttctccaact cctataacag caggcattcc aagttctgag gcacgaatgg
    11941 ccatatgtga attagcaccc ccataacatg taataagtcc tgctatattt tttgtaaata
    12001 aataatcata tccgggatct gccgcataaa ttaaaacaat ctttccttct aaatctttat
    12061 cattttcctt cgccgtaaat gcagtaatgc tcttttgtgt aataaaattt ggaataatgc
    12121 tatgattata aaaagaaaaa atttcatcag cattacaaag taaagaagga agttttatag
    12181 cttgtgtaag ttcatattct tttttattgc gattaatttc ttctataaac tgctcttttg
    12241 gatttataga ataaagacta gaataaagat ttaaaatgct ttttatatca agatgagcca
    12301 aatcttcttt ttcaatatca taatatttgc ctaattcttc tatataaact atggctttag
    12361 aaagcaatct agtaaattca aatttaacga gctctctacc ctcgatagcc tgttttaaaa
    12421 aatcaaaaaa ttcacaagca ttaatttcta gtccatgttc tttaagcaaa gcatttaaag
    12481 ctcttgtctt ttcttctgaa aaaacaaaag ctttatcttg taaataaact ttactatctt
    12541 tttgatctgc atcaaaataa agctcaaaat cttcatcata ccttggcgat aaaatattat
    12601 aagttcctgc tcttaaatgt ccaaaatctt ttaaaaattg atctttgttg tgaaaattaa
    12661 gatggtttgt ttgtttgctt aaatttttgc tcactgtatt gagtgaattt aaaaaatcat
    12721 ctttttcctc tttggttata aaatcaatct caactaaaga atttaaaagt tgcattgcta
    12781 caaatgcagc cctagccacc ccagcaaaag gcaaggttcc ataacgcttg cattcttcaa
    12841 taagccaata aattttatca attaaagaaa aattagaatt aataatgcca tcatatcttt
    12901 cttttagctt ataagctttt
//
LOCUS       DAQSLY010000040        12852 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.040, whole genome shotgun sequence.
ACCESSION   DAQSLY010000040 DAQSLY010000000
VERSION     DAQSLY010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12852
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.040"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            14..1111
                     /locus_tag="R2H98_000886"
     CDS             14..1111
                     /locus_tag="R2H98_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEE9023781.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1206..1778
                     /locus_tag="R2H98_000887"
     CDS             1206..1778
                     /locus_tag="R2H98_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023782.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1794..2360)
                     /gene="rsmG"
                     /locus_tag="R2H98_000888"
     CDS             complement(1794..2360)
                     /gene="rsmG"
                     /locus_tag="R2H98_000888"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEE9023783.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(2361..2921)
                     /gene="ribA"
                     /locus_tag="R2H98_000889"
     CDS             complement(2361..2921)
                     /gene="ribA"
                     /locus_tag="R2H98_000889"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEE9023784.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            2979..3962
                     /gene="hemB"
                     /locus_tag="R2H98_000890"
     CDS             2979..3962
                     /gene="hemB"
                     /locus_tag="R2H98_000890"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEE9023785.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQDVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIINPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGGR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            3959..4879
                     /gene="argF"
                     /locus_tag="R2H98_000891"
     CDS             3959..4879
                     /gene="argF"
                     /locus_tag="R2H98_000891"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEE9023786.1"
                     /translation="MKHFLTLRDCSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVVGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDKKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            4876..5367
                     /locus_tag="R2H98_000892"
     CDS             4876..5367
                     /locus_tag="R2H98_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEE9023787.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5354..6709
                     /gene="hemN"
                     /locus_tag="R2H98_000893"
     CDS             5354..6709
                     /gene="hemN"
                     /locus_tag="R2H98_000893"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEE9023788.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDVEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6711..7976
                     /locus_tag="R2H98_000894"
     CDS             6711..7976
                     /locus_tag="R2H98_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEE9023789.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            7973..8734
                     /locus_tag="R2H98_000895"
     CDS             7973..8734
                     /locus_tag="R2H98_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023790.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPF
                     LKSMIYKNKSENSSEKIFTLMINQKKHYKLIANLS"
     gene            complement(8737..8943)
                     /locus_tag="R2H98_000896"
     CDS             complement(8737..8943)
                     /locus_tag="R2H98_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023791.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIIK"
     gene            9177..9788
                     /locus_tag="R2H98_000897"
     CDS             9177..9788
                     /locus_tag="R2H98_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023792.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQTTLITTMIVVAKIFGPYLGLFFKRKNISFKIMLLSGGACIFICGFCMLFLQNL
                     VLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPNQTAYIMSAFWSITFVILSFNLWVV
                     SWSVDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            9790..10941
                     /locus_tag="R2H98_000898"
     CDS             9790..10941
                     /locus_tag="R2H98_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEE9023793.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNYRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(10945..11685)
                     /gene="yaaA"
                     /locus_tag="R2H98_000899"
     CDS             complement(10945..11685)
                     /gene="yaaA"
                     /locus_tag="R2H98_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEE9023794.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYGEF
                     IKNASLKNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGVSYEYLNFKILDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIALEILD"
     gene            complement(11777..>12852)
                     /locus_tag="R2H98_000900"
     CDS             complement(11777..>12852)
                     /locus_tag="R2H98_000900"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023795.1"
                     /translation="SACGNSIDEKTVKKYENQLNQTVKQEIASLSQDSGIKIEFSDFK
                     CNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIYKGEANTSISIKEYYN
                     DLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFINKLSSDSYTLSFDNS
                     INKQENNYIDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKGIKFNTQTLAMDEQAI
                     NELLNIANYEQASNFSNTIQKYIILNNFKIDSTLKTEGVFSSYITTAKENLQTLKTQS
                     QNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYSTQGIDSIEKLSINNQD
                     ATEALKIILPFIMFSMLMGGASF"
BASE COUNT         4374 a         1538 c         2287 g         4653 t
ORIGIN      
        1 aaaaggaaaa taaatgaaaa caagtttttt agcacatagc gtggctatag tgcgatcaaa
       61 ttttaagggt ttgcttttta ctgcttgtat agtgattttt gctatgtatc tttctagtgt
      121 tcaaagtatc aaagatacca ctcatttagc agcgactgct tttgctatta tcataggagt
      181 gttgctttct ccttggtttt ttaaatacca acatcatttt caagccggag tgcattttag
      241 tgcgaaaaaa cttttaagac ttggcattgt tttatatggt tttaatatca ctttaactga
      301 gcttttaagc gtaggattga aaggattttt gctttctgct atagtgatat tttttgtttt
      361 tattattgct ttatttgtgg gaacgaaaat ttttaaactc gataaagaaa cttctatgct
      421 tgttggagct ggaagtgcga tttgcggtgc ggcagcggtt ttagcactag agtcaagttt
      481 gaaaagtgat ccttttaagg gaattttagc tgtaggtacg gtggtgattt ttggacttgt
      541 atttatgttc ttatatccca tagctttttc tttaaatctt tttccttttt ttgatcaaaa
      601 tgctatgggt gtttttatgg gagctacttt gcatgaggtg gcaaatgtcg caggtgctgc
      661 tgaaatggca aaggatatgg caggatttga gcaaggtgct tctaatgttg cagtgattat
      721 aaaaatgatg agagtgattt tacttgtgcc ttttttgctt atagtgactt attttttcgc
      781 taaaaatcaa cattcaagca gtggaaaaac tgcaaaaagt atcactatac cttattttgc
      841 ttttgcattt ttaggcatga tagttttaaa tacttattta gcaagcaaag aaagtatttt
      901 aggtattgct acgagtgata tcatctcttt aggtaaaaca ctttgtactt tatgtatcgt
      961 ttttgctatg gcagctttag gcttgcaaat tgactttaaa aaatttttaa aaagtggctc
     1021 tagggtattt ggcttggctt ttgttttagg gcttgttttg atttttggag gatatttttt
     1081 aaccttagct tttaaaggta tactttggta ataaaaatta ttttttattt tagaaaattt
     1141 tattttatta atcaactaag aatataattt aattcattaa ttaaatttat taaaaaggaa
     1201 taaagatgaa aaaaattctt gtaagtgttt taagttcttg cttgttagct tcggctttaa
     1261 gtgctgtatc ttttaaagaa gatagtttaa aggtttcttt tgaaggatat aaaactaaag
     1321 atatgatagg aacaaaaggt gaatttaaaa atgtagaata taaattttct aaaaatataa
     1381 aggatttggc aagttatctt aaaggcgcta aagctaccat aaagccaagc aatgctttta
     1441 tgggtgaagg caatgatatt ataaccaata atatcacaaa agtatttttc cctgctttat
     1501 tgggagatac ggatattaaa gttgtttttc aagatgtgat tgcgggtgaa aataaaggcg
     1561 ttatttcagc aaaaattact atggataaaa aaagtactat tgtaccttta acttatacca
     1621 tcaaagataa taaatttgaa gctaaaggac aacttgattt gcatactttt aaaaatggtt
     1681 ctaaagcatt aaaagcatta agcgatgttg ctgcaggaca tggtggaatt tcttggcctt
     1741 tagtggatat cagttttaat gctgatttag cagaataaaa agtagcctta gggctacttt
     1801 aaaatacaat atcttcttaa attattttca aaaatttcat aatcttttat attttcaagt
     1861 tcttgataaa tttcactacc tttccataaa ataaaaactg tattttcatc ttttagattt
     1921 ttgcaaattt caagcaaagg cttgacatcc attaaggctc ttgaagtgat gatatcagct
     1981 ttaaaggtat tcttgtattc ttgaactttt tctttgtaaa tatgtaaatt tggaagttca
     2041 cattctattt ttaatgtccg caaaaaggca gcttttttgg gattgggttc gaaaagatga
     2101 aaattgcttt gcagtaaaaa agctaaaaat acagctggaa atcctgcgcc acttcctata
     2161 tcggcaatat tttttgcttt agaaaaatca taaaaatcta aaattttaat actatcaaag
     2221 atattttcat ctatattttt taaatgagta agattgtgaa tgcggttaaa tttagataat
     2281 aattctttat aaatttttac cttttcttca aagtttttta aatcatagtt ttgcaaaaaa
     2341 tcataatctt taaaaatcat ttatttaaga tgtcccattt gagtttgttt tatgtttaaa
     2401 tactctacat taaaacgatt aggttctatt aaaatcggta tgcgtgtgat gattttttct
     2461 ttgatagaat ctagcttttc agggttattt gtgagtaaat taaccttaga aatttcatag
     2521 tgtttgagta taaattctac aatttcataa gttctctcat cggctttaaa gccaagctga
     2581 tgatttgctt taatcgtatc aaaaccttta tcttgtaaag cataagcatt aaccttgtta
     2641 aaaagcccta taccccttcc ttcttgtcta agataaatca ccattccgcc attcttttct
     2701 atatatttta gcgaaaattc aagctgttct ccgcagtcgc attttaaact tcctaaagca
     2761 tctcctgtta agcactctga atgaattctt agattgagtg tatcttttgg agtgttttta
     2821 aatatgcata aatgttcttt atcgttttct ttgaaacttt gcatttggaa atttccccat
     2881 ttgctaggta aattcgcaat ttctgaaatt tttatttcca tttactactc tctataatca
     2941 aatttatgtt aagattttag caaaaaaagg acaaaaaaat gtttaaaaga tttagaagat
     3001 taaggcttaa tgaaaactta agatctatgg taagggaaaa ttctttaagt gtaaatgatt
     3061 tgatttatcc gctttttgtg gttaatggaa cggggataaa aaaagaaatt tcttctatgc
     3121 ctgatgtgtt tcaaatgagt ttagatgaaa ttttaaaaga gtgtcaagat gtagttaatt
     3181 taggcattaa agccattata ctttttggcg ttttggaaaa tgagaaaaaa gacagctgtg
     3241 gaagcgatgc tttagatgat gaagggcttg ttgcaagaag tataagagag attaagaaaa
     3301 attttccaga tctttttata atcagtgatc tttgtttttg cgaatacaca gatcacgggc
     3361 attgtgggat tatcaatcca aaaacaaaaa gtgtggataa tgatgtcact ttagaaattt
     3421 cagccaaaca agccttagtt cacgcaagag caggggtaga tatgatagca cctagtggaa
     3481 tgatggatgg tattatcact actttgcgca aagctttaga taaagaaggt tttgaaaatt
     3541 tgcctataat ggcgtattct actaaatttg cttcaagtta ttatgggcca tttcgagatg
     3601 tagcagaatc agctccaagt tatggaggta gaaaaagcta tcaaatggat tttgctaatg
     3661 gtaaagaagc tttagaagaa agcttggaag atgaagcaca aggagctgat attttgatgg
     3721 taaaacccgc tcttgcttat cttgatgtgg ttaaagaaat atcccttcat tctaacttgc
     3781 ctttgtgtgt ttataatgta agcggagagt atgctatgtt aaaggcagct aaaaatgcag
     3841 gagtgattga ttatgaaaaa gttttgtatg aaactatgat agcttttaaa agagcagggg
     3901 caaagcttat catcacttat catgccaaag aattagctaa aatgttaaaa ggagaaaaat
     3961 gaaacatttt ttaactttaa gagattgttc taaggaggaa attttaagcc ttgtaaatca
     4021 tgctagcgag ttaaaaaaag agcctaaaaa acttttacaa gataaaactt tagcaatgat
     4081 ttttgaaaaa aactctacaa gaacaagaat ggcctttgaa ttagccataa cagagcttgg
     4141 cggaaaggct ttatttttaa gtagcaatga tttacaactt agtcgtggcg agcctgtaaa
     4201 ggatacagct agggtggtag gggcgatggt tgattttgtg atgatgagag tcaataaaca
     4261 tgaaacttta ctcgaatttg caagatattc taaagcccct gtgatcaatg ctttaagcga
     4321 gctttatcac cctactcagg ttttaggaga tttgcttact atcaaagaat ggaataagat
     4381 gcaaaatggt atagcaaaag ttgcttttat cggagatagt aacaatatgt gcaattcttg
     4441 gcttattgcg gctgcgattt tgggctttga atttagtata gctataccaa aaaactataa
     4501 aattagccct gaaatttggg aatttgctat gaaacaggct ttgatttcag gagctaaaat
     4561 ttccttaagt catgataaat ttgaagcctt aaaggataaa gatgtagtca ttaccgatac
     4621 ttgggtttct atgggtgaag agaatgaaaa agaacgcaag attaaagaat ttgaaggatt
     4681 tatgatcgat aaaaaggcta tgagcgttgc caataaagac gcgatattgc ttcattgttt
     4741 gcctgcttat aggggttatg aagtgagtga agaaattttt gaaaaacatg cagatgtgat
     4801 ttttgaagaa gcaagaaatc gcctttatgt ggtaaaagcc ttgctttgct ttttggataa
     4861 tcagagagga agagaatgaa agagctagaa aagtatagca cttgcttaaa acgcattgat
     4921 gaatttagtc aaaatctagg aataaagaaa aaagatagaa cgatttttaa aatgaagcaa
     4981 agcgagaatg aaaacgaaaa atgtttagtt cttgaaaatg gaagttttga ttctcctgag
     5041 ccttggtttg tgatcgatga aaacgatgaa attcacactt tgctttcttt gcaaagtctt
     5101 aagaatatac ttgaaagttt aaaacaaagt caaaaagaga attttgaatt gcgtttagaa
     5161 aaggcgattt atcaacaaat tcctgtagat tttaacgatg tttggacggt tgctatggat
     5221 gagatcaagc aaaaggcgca aaatggcacc atggaagtta gtattgatct tgaaaaatta
     5281 atttctaaaa tcaaacaaga gcatccaaat ttatttgtag atatgcaagc gatgatagaa
     5341 agggtaaacc aaaatgagag attataaagc ttttgtaaaa tactctaaag caggaccacg
     5401 ctacacttct tatcctacag cagtagagtt taatgcaaat ttcaaatacg aagaatatat
     5461 agaaatttta aaaaagcaag atagatcttt atcgctttat tttcatttac cattttgtag
     5521 gagtgcttgt tatttttgtg gttgcaatgt tatttataca gccaaagaag agagtaaaga
     5581 aaggtattta acttatattt ttaaagagct tgatatttta agtactattt tagatactaa
     5641 aagagaagtg gtgcaaatgc actttggggg cggaactcca acttttttta gtgctaaaca
     5701 acttcaaaat ttgattttaa aaatcagatc tgtttttgga aatttttcta aagatgtaga
     5761 gattagctgt gagatcgatc cgcgtttttt aaatgaggaa caagccacag ttttaacgca
     5821 aaatggcttt aatcgtatca gctttggagt gcaggatttt gatgaaaaag ttcaaaaaga
     5881 aattcatcgc atccagcctt ttgaattaac acaaaatgct ttaaatcttg taagaagcaa
     5941 agggataaag tctgtaaata tggatttaat ttatggtttg ccttatcaaa atttacaaag
     6001 ctttacacaa actttagaaa aagttatgct tttaaaccct gatcgtttgg cgatttttaa
     6061 ttacgctcat gtgccttggc ttaagaaaaa tatgagaaaa tttgatgaaa ataccttgcc
     6121 aagtcctgat gttaagcttg aaattttaga attttgtgag aaatttttaa gcaaaaatgg
     6181 ttataaaatg ataggaatgg atcattttgc aaaagaaaat gatgagcttt ttaaagcttt
     6241 agaaaatgga actttgcata gaaatttcca aggttatact accaaaggcg gtgctgattt
     6301 agtcggtatt gggcttacaa gtataggcga agggcaaaga cattatgcgc aaaattttaa
     6361 agatatgtca agttatgaag ctgcattaga tagaggagtt ttgccttttg aaagaggcgt
     6421 agctttaagc gatgatgatg agcttagaaa agcagtgatt atggagttaa tggcaaattt
     6481 taagcttgat atcaagtcaa tagaaaaaga attttgcatt gattttcagg agtattttaa
     6541 agaggattta aaagctttgg aagaatacaa agattttatt aattttgatg aaaattttat
     6601 caaagtcaat gaaacaggcg ttttgcttat aagaaatatt gctatgtgtt ttgatgctta
     6661 tatgaaaaac attagtgaag ataaaaaagt attctcaaaa acggtgtaag atgaaattta
     6721 gtcaaataag tgatgcttgt gttaaatgtg gcaaatgtat acctgtttgt actatacatg
     6781 aagaaaatcg cgatgaaatt actagtccaa gaggattttt agatctttta gctgcttata
     6841 aagagggaag tctagagctt gataaagaag ctaagaaagt ttttgaatct tgttttttat
     6901 gcaccaattg tgttgaagta tgtccaagta aattaagagt agataatgcc atagaagaag
     6961 ttcgttatga tatagctaaa aaatttggta tagcttggta taaaaaactt atttttttct
     7021 ttctaagaag acgcaaaatt ttagatttgg tagctaagct tggctatgtg tttcaaagtt
     7081 gtgcgtttaa aattcaaaat gagaatgaaa atacaggtat gaaggcaaga ttttccatgc
     7141 cttttgttaa aaagggaaga ttgcttacaa gttttaataa aaaaagtttc ttaaattcta
     7201 atccaaaatt tatcaataat gatggagaaa aaacaatagg tttttttgta ggttgtttgg
     7261 cgaattattt ttacatagat acggctaatg cagtgcttaa aatcgctaag gaattaaaaa
     7321 tcaatgtgga tttgatgaaa gaacaagtgt gttgtggagc gccgcaattt tttacgggtg
     7381 attttaaaag tgttgaagtt ttggctaaaa aaaatattga gtattttgaa aaaaaattag
     7441 aaaaattaga tgctattata gttcctgagg ccacttgttc ggctatgtta aagatagatt
     7501 atgaacattt ttttataatg caaaatgatt tagactgggc aaaacgcgca aaatgtgtgt
     7561 catctaagat atatatggct agcgagtatt tttataaatt tacttcttta gaagaaattt
     7621 taaaaacaaa aaataaaatt aattatagca ttacttatca cgatccttgc catgcaagaa
     7681 aaatgcaagg ggtttttaaa gagccaagag aacttttaaa aacaaattat cattttgtag
     7741 aaatgagtaa ttctaatact tgttgcggtt ttggcggggt gggtatgcaa acggattatt
     7801 atgatagagc cttaagtgta gggcttaaaa aagcacaaat gatcgatgaa agtaaggcta
     7861 gtgtggtaag tgccgagtgt tcagcttgca gaatgcaaat ttcaaatgca ttagaacaaa
     7921 attcaagcaa ggttgttttt gctagtcctt tagaacttat agcaaaagct ttgtgatgat
     7981 gaagatagta tttaaaggca aaagttctga atatgaaatt caaagatcgt gcttttgtgt
     8041 tgatgctttt gtgattaaag ataagattga agaacgagat ggtgttgatt ttatcacttc
     8101 aaatgtagat cttttggaat ttagtgatga cagttttact tttgaagaaa ttgtaaaaca
     8161 ttttaatatt tgtgatagtg aagatatgat tatcgttgaa gattttgaca tgaaatcaaa
     8221 caaagataat caaaaccaag aagatgatat agaacacaac atcttaaaat ccgaaaaaat
     8281 aatacatgaa aacacaaaac aaacaagtat gcaatttaaa aatttaaaat ttttttcaag
     8341 aatttttaaa aatgaaaatt ttctttctga ttttaaagaa agtaagcaag aagttgttac
     8401 tatcaaaaaa catgaaaaac ttgaaatttt taaaaattta tctcaagaag atcaagaaat
     8461 tagctttgtt aaaattgaaa ttttaaatta tgatagtaat gaagatagtt taagttttaa
     8521 tcttgatata tttccaagcg gtatgagcta taagtacgga attttaaaag gctctatgca
     8581 tattatttta caaggtaaaa cttctagtac gatgcttttt ccgtttttaa aaagtatgat
     8641 ttataaaaat aaaagcgaaa attcaagtga aaaaattttt actttaatga taaatcagaa
     8701 aaaacactat aagcttatcg caaatctttc ttagttttat tttattatat tttctatatt
     8761 agagcgattt ttttcaatta aagagcgatt tttttgagtt gtttctttaa gatcggctat
     8821 atcttctttc atattttgta tgttttggtt gagtaatttt atcttttttt catagcgagt
     8881 aacgatgata aagactacaa ataaaaatat aataatcaaa aaaataaatg ctaaaaattc
     8941 catatttttc ctttttaaaa ctagattttg aaatatatca tttaaatact tcaaaaaact
     9001 tttacgggtt ttttattttg tattttagtt tttttatctt taaacttata tataaattgt
     9061 caaaaagtaa caaaaaaata tataaaaaaa taattaaatt aaaaaaataa ttaaagataa
     9121 taaatatctt atttttttat gttatatttt aatagatatc taaaaaggat tttaatatgg
     9181 aaaaatcact tttatttcat tttagacgca ttggagttga atttatcatt tttagtgttt
     9241 atgctgtttt tagtatctct tgggcagcga cagggtcttt gatgcctttg atttcaaatg
     9301 atcttgccct aaatactcag caaactactt taatcactac catgatagta gtcgcgaaaa
     9361 tttttggtcc ttatcttgga ttatttttta aaagaaaaaa tatctctttt aaaataatgc
     9421 tattgtctgg aggagcgtgt atttttatat gcggattttg tatgttattt ttacaaaatt
     9481 tagtattgat acagattttt gctgtgttat caggcatttt ttattctatg tggtttccat
     9541 ttttctttaa tctaccttca gaactaaaaa attccaatcc aaatcaaact gcttatatta
     9601 tgagtgcttt ttggagtatt acctttgtta tactatcatt taacctatgg gtagtatctt
     9661 ggagtgttga taaaacccat agttttactt tgggttttgt ttatattttt gctttgattt
     9721 ttatttcagc gatcttagca caatttgttt tacctagaag agaaaatttt atacaaggag
     9781 aaaaatagaa tgaatttaat tccagaaata ctagacttac aaggcgaatt tgaaaaaatt
     9841 cgtcatcaaa ttcatgaaaa tcctgagctt ggttttgatg aattatgtac tgcaaaatta
     9901 gtggcgcaaa aattaaaaga atttggttat gaggtttatg aggaaatagg aaaaacaggc
     9961 gttgtggggg ttttaaaaaa ggggaatagc gataaaaaaa taggacttcg tgcagatatg
    10021 gatgctttgc ctttgcaaga atgcacaaat ttgccttata aaagcaaaaa agaaaatgta
    10081 atgcatgctt gcggtcatga tggacatact acttctttat tgcttgctgc aaagtattta
    10141 gcaagtcaga attttaatgg tactctaaat ctttattttc aacctgctga agagggcttg
    10201 ggtggtgcta aggcaatgat agaagatgga ttgtttgaaa aatttgatag tgattatgtt
    10261 tttggatggc acaatatgcc ttttggtagc gataagaaat tttatcttaa aaaaggtgcg
    10321 atgatggctt cttcggatag ttatagcatt gaagttattg gaagaggtgg tcatggaagc
    10381 gctccagaaa aagcaaaaga tcctatttat gctgcttctt tgcttgtggt ggctttgcaa
    10441 agtatagtat ctcgcaatgt tgatcctcaa aattcagcag ttgtaagcat aggagctttt
    10501 aatgcaggac atgcttttaa tatcattcca gatattgcaa cgattaaaat gagtgttaga
    10561 gcattagata atgaaactag aaagctaact gaagaaaaaa tttataaaat ttgtaaaggt
    10621 cttgcacagg ctaatgatat agagattaaa atcaataaaa atgttgttgc accagtgact
    10681 atgaataacg atgaagctgt ggattttgct agtgaggttg caaaagaatt atttggcgaa
    10741 aaaaattgtg aatttaatta tcgtccttta atggcaagtg aggattttgg gtttttttgc
    10801 gaaatgaaaa aatgtgccta tgctttttta gaaaatgaaa acgacattta tttacataat
    10861 tctagttatg tttttaatga taaactttta gctagggctg caagttatta tgcgaagcta
    10921 gctttaaaat acttaaaata aaaactaatc tagaatttca agcgcaattt cttcctttaa
    10981 acctttgatt tgaatttctt tgagttttag atttgaagga aggtttgcta aaagctcttt
    11041 attgtttttt acttggtttt ttgcacttat ggagagtaaa attcccctgt aagctttagc
    11101 aaaatgactg atgactttac cattttttac aaatttatag gtataaaatt tcttttttgg
    11161 ggtatagaat ttatcataaa atcctgctct aagatcaagt atttcttcat tttccaagta
    11221 ttcatctaag gctttactaa aatgttcttt ataaaatttc tctatggtaa aatttcctat
    11281 tttagcccct tgcttgaatt tataaaaggg tagggtatca ttagctctta caacgccaaa
    11341 aagattagaa aatataagag tattttctaa aatataagct tgactttttt tatctaggat
    11401 tttaaaatta agatattcat aacttacccc agtgtaaagc attatagctt cttgagtggg
    11461 agcttgtttt aagtcgtgtt taaatttatc aatttcattt tcgtttttaa tgccaaaaag
    11521 ttcttgtaaa ttttttaaac ttgcattttt gataaattct ccataatgct ttaaagcttc
    11581 cattctataa ggaaataatt ctttaaatat aaatgagttt tcatcgatgg gattttttgt
    11641 acaattttca tttttacttt cactagggga gaataaaatt ttcattttag ccttttttgt
    11701 taatgttatg aaaacattaa gagcaaagaa tttaatcttg cttttaatgt ttttgaagtt
    11761 tttatcattt taaaatttaa aatgacgctc cgcccattaa catagaaaac atgataaatg
    11821 gaagtataat ttttaacgct tctgtggcat cttgattgtt gatgctcagt ttttctatac
    11881 tgtcgattcc ctgtgtgcta tagtcactaa cagggatgtt tttaaatttt aaatcaagat
    11941 tgagtttata atcatcgttt tgagtaatat tgtttaaaat agctaaagct ttatcaaaga
    12001 ttaatgcttg ttcttcattt tgactttgag tttttaaggt ttgtaaattt tccttagcag
    12061 ttgttatata gctactaaat acgccttcgg ttttaagagt tgaatcaatt ttaaaattgt
    12121 ttaaaatgat gtatttttgg attgtattgc taaaatttga agcttgttcg tagtttgcta
    12181 tattaagaag ttcattgata gcttgttcat ccatagctaa agtttgagtg ttaaatttta
    12241 tacccttaga atcaaggtaa ttaagcaaat cttcttttag atttatattt aaatttgtat
    12301 tgaaatttaa ttttgcgtta taaaatttta tatcaagatt atctatataa ttgttttcct
    12361 gtttgttgat ggagttgtca aatgataaag tataagaatc tgagcttaat ttattgataa
    12421 aagagctgat ttttggatct tgttgaaata agcttgcatt gatgtcacta acaacttttt
    12481 ctccaagttt aaaatcttca aaaaccaaat ttgattgtat gcttttttgg tttttaaaaa
    12541 gatcgttgta atattcttta atgctaattg atgtatttgc ttcgcctttg taaatttcat
    12601 ttgaacgaat tttgatattt tttgcttgaa atagttcttg atactcatcg ttattatctt
    12661 ttgcaagagt tttgaaattt ggacttaaac acgctataaa atcaccatct gcattgcatt
    12721 taaaatcaga aaattcaatc tttattccag agtcctgaga aagacttgca atttcttgtt
    12781 taactgtttg atttagttga ttttcatatt ttttaactgt tttttcatct atggaatttc
    12841 cgcaagctga aa
//
LOCUS       DAQSLY010000041        12366 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.041, whole genome shotgun sequence.
ACCESSION   DAQSLY010000041 DAQSLY010000000
VERSION     DAQSLY010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12366
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.041"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..324
                     /locus_tag="R2H98_000901"
     CDS             <1..324
                     /locus_tag="R2H98_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEE9023796.1"
                     /translation="NVFKNTQNKNFIKLSAQKDITLLKEELQNYFNSFDSEGIMVSSL
                     DLINACKISSEAIFRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGN
                     FCLGK"
     gene            335..2521
                     /gene="purL"
                     /locus_tag="R2H98_000902"
     CDS             335..2521
                     /gene="purL"
                     /locus_tag="R2H98_000902"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEE9023797.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGKSLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKIFAISSVGVNLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDNIELSKAELDKLYFESFKEQIQ"
     gene            2518..3288
                     /locus_tag="R2H98_000903"
     CDS             2518..3288
                     /locus_tag="R2H98_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEE9023798.1"
                     /translation="MTLVLIILVILVFYWYYKTWGKQDFLNSAARGAKGFAKGFVRGV
                     MEERMDEFKRRMNYYVIVLLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELSNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            3291..4823
                     /gene="purH"
                     /locus_tag="R2H98_000904"
     CDS             3291..4823
                     /gene="purH"
                     /locus_tag="R2H98_000904"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEE9023799.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLDFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAMF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDEFKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKVAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            4918..5379
                     /locus_tag="R2H98_000905"
     CDS             4918..5379
                     /locus_tag="R2H98_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023800.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLMQEV"
     gene            5836..6369
                     /locus_tag="R2H98_000906"
     CDS             5836..6369
                     /locus_tag="R2H98_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEE9023801.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNAGIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVAQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            6385..6504
                     /locus_tag="R2H98_000907"
     CDS             6385..6504
                     /locus_tag="R2H98_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEE9023802.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            6520..6954
                     /locus_tag="R2H98_000908"
     CDS             6520..6954
                     /locus_tag="R2H98_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEE9023803.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            7053..8030
                     /locus_tag="R2H98_000909"
     CDS             7053..8030
                     /locus_tag="R2H98_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEE9023804.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKKVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPNPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            8027..8914
                     /locus_tag="R2H98_000910"
     CDS             8027..8914
                     /locus_tag="R2H98_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEE9023805.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            8911..9783
                     /locus_tag="R2H98_000911"
     CDS             8911..9783
                     /locus_tag="R2H98_000911"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEE9023806.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGIEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(9795..11141)
                     /locus_tag="R2H98_000912"
     CDS             complement(9795..11141)
                     /locus_tag="R2H98_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEE9023807.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENKHYAKLEY
                     EQNVSILPQFTYNINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGSPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDAT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            11190..>12366
                     /gene="pif1"
                     /locus_tag="R2H98_000913"
     CDS             11190..>12366
                     /gene="pif1"
                     /locus_tag="R2H98_000913"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEE9023808.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     "
BASE COUNT         4453 a         1437 c         2341 g         4135 t
ORIGIN      
        1 aatgttttca aaaatactca aaataaaaat tttatcaagc ttagtgctca aaaagacatc
       61 actttattaa aagaagaatt gcaaaattat tttaattctt ttgatagcga aggtattatg
      121 gtaagttctt tagatcttat taatgcttgt aaaatttcaa gtgaagcgat ttttagagct
      181 aaagggcttt tagaggaaag ttctttagaa ctttttgctt ttgagcttaa tttagcgatt
      241 aatgaacttg caagatttac caaagatttt caaagagatg aaattttaga cgaaatgttt
      301 ggtaattttt gtttaggaaa atgaaaggat aaaaatggac aaagaaacca taaaagcaca
      361 taaaatcagt gatgaagaat atgcacaaat tttagaaatt ttaggacgcg agccaaattt
      421 attagaactt ggggttattt ctgcgatgtg gagcgagcat tgctcttata aatccagtaa
      481 aaaatatctt aatggttttc caactaaagc accttgggtg attcaaggcc caggagaaaa
      541 cgcaggggtt attgatattg ggcaaggtat ggcagcagtt tttaaggtag aaagtcacaa
      601 tcatcctagc tttatcgagc cttttgcagg tgcggctacg ggagtagggg gaattttgcg
      661 tgatgttttt actatgggtg caagagtggt tgcagggcta aattctttaa aatttggcaa
      721 tattcatgat gaaaaatgcg gcaaacatca aaaatacctt gttaaaggtg tggtaaatgg
      781 aatttctcat tatggaaatt gcatgggtgt gccaactata ggtggagaat gtgcttttga
      841 tgagtgtttt aatggaaata tcttagttaa tgcctttgct ttaggggttt gtaaaagtga
      901 agatatcttt tatgctaagg ctgaaggtgt aggaaatcct gtgatttatg tgggttcaaa
      961 aacagggcgt gatggacttg gtggagcggt tatggcaagt gatagcttca atgaagaaag
     1021 caaatctttg cgtcctacag tgcaaattgg cgatcctttc agtgaaaaac ttcttatgga
     1081 agcttgttta gagcttttta aaactgatta tattgtgggt attcaagata tgggtgctgc
     1141 agggcttact tcaagttctt ttgaaatggc aggaagaagt ggcagtggca tgaaacttta
     1201 cttagataaa actcctatac gtgaaagcgg tatgactcct tatgagttaa tgcttagcga
     1261 gtctcaagaa agaatgctta tttgtgcgaa aaaaggctat gaagataagg ttatagaaat
     1321 tttcaaaaaa tgggatttag atgctgtggt tataggtgaa gttaccaata caggaaaaat
     1381 ggagcttttt tggcatgatg agcttgtagg gcttattcct atcgagcctc taagtgaaaa
     1441 agcgccgatt ttaagtcgtc ctataagtga gccaaaatat ttaagtgaaa ttaaagatta
     1501 taaatttgag ctaaaattaa gcattcaaga gctttttata caaatgcttc aaaatgaaaa
     1561 tattaacaac aaagctttta tttatgatca atttgattca agtgtgcaaa ccaatactat
     1621 aaaagctgat ggaagattag gtgctagtgt tattcgtatc aaagaaaatg gtgcaagtgt
     1681 ggctatggct atagaatgta actcacgctt aaattatgta aatcctaaaa taggagcagc
     1741 tttagcagta gcttcagcag gaagaaaagt tgcttgcacg ggggctaagc ctttggcaat
     1801 aagtgattgt ttaaattatg gaaatccgca aaatcctgaa gtgatgtggc aatttgcgca
     1861 aggttgcgaa ggcattaaag aagcttgtaa agagttaaat accccagtag taagcggcaa
     1921 tgtttcactt tataatgaaa ctgaaggcgt aagtatttat ccaagtccta ctatagtaag
     1981 cgtaggggtt ttagaagatg caaataaaac cttaaaagct agttttgaaa aagaaaattt
     2041 aagtgtttat cttttgggta aaagtttagg ggaatttggc ggatctatgg taatgaaaat
     2101 ccaagataaa aaagtatcag gaagtcttaa agagcttgat tataaagctg aaattgcact
     2161 ttgggatttg ctttataaag ccaatcaaaa ttctttactt gagtgtgcca atagcgtagg
     2221 aatagggggt attgctatga ctttggcaaa aatatttgct atttctagtg tgggtgtaaa
     2281 tttaacaagt ggttttgatg atgaaaaaat gatttttgat gagagtgcaa gtcgtgctat
     2341 agtagggctt agcaaagaaa atgaagaagc ttttttaaat ttagccaaag aatttggagt
     2401 aaaagcttat aaattaggtg tgagtacaag ccaaaaacat tttaaacttg ataacattga
     2461 gttaagcaag gctgaacttg acaagcttta ttttgaaagt tttaaagagc aaatccaatg
     2521 actttagttt taattatact cgttattttg gtgttttact ggtattataa aacttgggga
     2581 aaacaggatt ttttaaactc agctgcaaga ggagccaaag gctttgctaa gggttttgtt
     2641 cgtggggtta tggaagaaag aatggatgag tttaaaaggc gtatgaatta ctatgttatc
     2701 gtacttttgg caaaaattgc aaaaagtgat ggtagggtaa gtgaaaatga agctgaaatg
     2761 atcaaagatc ttttagatgc aaatgccaaa gatgaaaaag aaagagcttt tttaaaagca
     2821 agttttaatg aacataaaga aaatttaagt gatgcttttt atgtggcaaa agatttttta
     2881 aaagaagtgc ctttgcctaa aaatgagcgt tttaatgtct tgcgtgtgct tgtttttatg
     2941 gctttaatcg atgcagattt taatgctaaa aagcgtgaaa ttttagagca aatcgctaaa
     3001 gcctttgata tagcaaaaag cgaattagac gcttttatag caagtctttc aaatttaaaa
     3061 agtactaaaa aagaattaag ccttgatgaa gcttttgcta ttttagaact ttcaaataat
     3121 gcggatttaa atgcggtaaa aaaacaatac cgcaatttag caaaaaaata tcatcctgat
     3181 attttaaatg caaacaatgt tagtgaagaa gagcttaaaa tcggtgtaga gaaatttcaa
     3241 aaaatcaacg aagcttacga aaaagttaaa aaacatttag aaaggtaaaa atgagagcat
     3301 tacttagtgt gagtgataaa gaaggcatag tagaatttgg caaagagctt gaaaatttag
     3361 actttgagat tctttcaaca ggtgggactt ttaagctttt aaaagaaaat ggaataaaag
     3421 ttatagaagt gagtgatttt acaaagagtc ctgagctttt tgaagggcgt gtgaagactt
     3481 tgcatcctaa gattcacggt gggattttac acaaaagaag cgatgaaaat catatcaaac
     3541 aagcaaaaga aaatgaaatt ttaggcattg atctagtttg tgtgaattta tatcctttta
     3601 aaaaaaccac catcatgagc gatgattttg atgaaattat agaaaatatc gacataggtg
     3661 ggcctgcgat gataagaagt gcagcaaaga actataaaga tgtgatggta ctttgcgatc
     3721 cgcttgatta tgaaaaagtg attgagactt taaaaaaagg tcaaaatgat gagaattttc
     3781 gtttaaattt gatgataaaa gcttatgagc atacggcaaa ttatgatgct tatattgcaa
     3841 attatatgaa tgaacgcttt aacggaggtt ttggagcgag taaatttata gtagggcaaa
     3901 aagtatttga tacaaaatat ggagaaaatc cacatcaaaa aggggcttta tatgagtttg
     3961 atgccttttt tagtgcaaat tttaaagctc ttaaaggcga agcaagtttt aataatctaa
     4021 ccgatattaa tgcagcttta aacttagcta gtagctttga taaagctccg gctattgcta
     4081 tagtaaaaca tggaaatcct tgcggttttg ctataaaaga aaatttagta caaagctata
     4141 tacatgcttt aaaatgcgat agcgttagtg cttatggagg agtggttgca atcaatggaa
     4201 ctcttgatga ggctttagca aataaaatca atgaaattta tgtagaagta atcatcgcag
     4261 ccaatgtaga tgaaaaagct ttagctatgt ttgaaggtaa aaaacgcatt aaaattttca
     4321 ctcaagaaag tccattttta atccgcagtt ttgataaata tgattttaaa catattgatg
     4381 ggggttttgt atatcaaaac agcgatgaag ttggcgaaga tgagtttaaa aatgcaaagc
     4441 ttatgagtca aagagaggca agtaaggaag aattaaaaga tcttgaaatc gccatgaaaa
     4501 tagcagcatt taccaaatca aacaatgttg tttatgtaaa aaatggcgct atggtggcta
     4561 taggcatggg tatgacaagc agaatcgatg cagcaaaggt agcaatcgct aaagctaaag
     4621 aaatggggct tgatttgcaa ggttgcgttt tagcaagtga agcctttttt ccttttagag
     4681 atagcataga tgaagcaagt aaagtagggg ttaaagctat agtagaacca ggcggaagta
     4741 taagggatga tgaagtggta aaagcagctg atgagtatgg tatggcgctt tatttcacag
     4801 gagtaagaca tttcttacat taagtttaat agaatgttat gttttttaca cataatttaa
     4861 taaaaattaa attatgtgta aaatatttcc gaaaaatttt atttttagaa aactatgatg
     4921 tttaaaacta taggatttaa ggtttctgct gcaatttttg tggtgttgct tataagtttc
     4981 attgtaatgc aagtgatttt aaatttggat tttaaaaata ctgccaataa aatgagcagg
     5041 gcaaatttaa ataccgtaag tacttctgtt tttcaaacaa tgagaatggc tatgaattta
     5101 ggagatcctg aaaaaattaa agaagccatt gaagatgtaa aaagtataga gggtattagt
     5161 gatattaaaa tttatccttc aaaagatact atagatcttt ttgagatgaa agcccctcaa
     5221 atttcaaatg ataagcgtat tatagaacaa ttttcaaatc ctaaaattca agctttggaa
     5281 gaaaatataa atggtgttgt gtatttaaga ttgatacgcc ctttgattgc agatgaaagt
     5341 tgtgttactt gtcatgaaat gctaatgcag gaagtgtgat tggggttatg gatatatcac
     5401 attctttaga aggtgtttaa aaagatataa gcaaaaccgg tcaatcttat attataatat
     5461 ttactattgc tttgattttt accctttgtg gtggttcttt taatgcttaa agttgttgtt
     5521 ggaaagcccg ttttagagct tttaaatcat gctaaagaat tagctcaagg aagcggcaat
     5581 tttaaaagct cgtatttcag ttaaaggtca agatgaaatt gctttagctt gtggatatat
     5641 caatcaattt atcgaaaaaa ctcacaaggc agttagcagt gcaagtcata atttaaaaaa
     5701 tgtagaaaaa caaagcaatc ttttaaattc aaatgctatt ttttaagtga tatcagttca
     5761 caaagtcata agcaaataga tcaaagtttt aaacttggtg caaatgttgg caatgaactt
     5821 agagaacttg ctagtttgtc aaataaggca aatagtgcca atgaaaaatc ctttttatta
     5881 ttagagcaaa tgcttaaatc tttgtttaat gttgctaata aagtatcaat agtatcccaa
     5941 aatgaaaatg aattggctaa aaaagttgaa aacatggtca atcaagcagg taatatacaa
     6001 aaagcaactc aaatgatgga taagatcgca gataaaacaa aattaccatc cctaaatgct
     6061 ggcatagaag tagctagggc tggtgcattt ggactaggtt tttctgtaat tgctgaggat
     6121 gataggcagt tggctcagaa cagtgaagaa tttttgggaa atgtagctca aattacaaaa
     6181 gagcttttac aaagtattaa tgaggttaac gcagaattaa agaaaaatac tcaaagtata
     6241 caagctttaa atgatgacac cgctttattg gttgatgatg ctaatgaggt taaattatgt
     6301 aacgaagatg ctagggcttt ggtaactcaa tgtactgaaa aaataaaaat ttcccaagag
     6361 aatatataaa atttactttc tcgtatgcaa gaaaatgttg aagtaagtga aaagaatgaa
     6421 gaaatttcta aaattctact tcaagttgta gatgagttaa aaatagtgtg tcataatctc
     6481 gaaagcgaac ttaaccaatt ttaaatttaa aggaataaaa tgaaaaaaac gcttcaaatt
     6541 gctttagctg caactttttt tgcaggttgt gctagtactt ctgttacttc atctacttct
     6601 aaaggtaata atgaacttgt acaaaatcag cttttcaaaa tagaaaaaat tatagttaat
     6661 ggtaaaactt ttgatccaaa aaacgcagag gaaagtccaa atattagttt tgaaaataat
     6721 aaattttatg gttattcagg gtgtaatcgt ttttttggtt cttatcaaac taaggcggat
     6781 actttgcaaa tcgaaggtga tcgcgtagct tcaactcaaa tgctttgtca tccaatggat
     6841 gtaatggatt ttgaaaattc tttcctttca aatttcaaag gaatttttaa aatttcaaat
     6901 gaaaatggaa aacttgtttt aagtaatgat gaaatgaaga tcttttttaa ataatatcct
     6961 aaagcctcga aatatcgagg taatcttctt aaatttgaca aaagtctaaa aaatgataca
     7021 attataattt tattatcaaa aaaggtagtt aaatgataaa atcaattcct gaatggagtg
     7081 agcaagaata cctcatgctt tctttacccc atgaaaaaag cgattggaat ccctatttag
     7141 aggaaatttt gcaaagttat aaagaatttg taaaagcagt gagtgaattt caaaaagttt
     7201 tacttatagc tcctaaacag agtgattttg aaaattttaa agatataaaa aaagtagagt
     7261 attttaaatg tgataccaat gatacttgga tacgtgattt tggagctata gatataatag
     7321 aaaatggtcg tttaaaggct cttgatttta cttttaatgc ttggggaaat aaatttcaaa
     7381 gtgagcttga taatgctgta aattctaagc tttttaaaga gaaatttaaa gaggaactta
     7441 aaaaggttga ttttatttta gaaggaggaa gtattgactt taatggagag ggtgtgatgc
     7501 ttacaagctc tcattgtctt ttaaatgaaa atagaaattc tcatctaaac aaaacccaaa
     7561 ttgatataaa attaaaagaa atttttggtt taaagcaaat tatttggcta gaaaatggtt
     7621 tcataaaagg tgatgataca gatcatcata tcgatacctt agcaagattt atagataaaa
     7681 ataccatagc acattgtatt tgtgaagatg aagaggatga acattatttg cctttgcaaa
     7741 aaatgaaaga agagcttaaa aaaacaggct ttgatttagt agaacttcct atacctaatc
     7801 ctttatacta tgaaggaaga agattaggcg caacttatgc gaattttgtt tttataaata
     7861 atgctttaat tgtgcctttt tataaggata aaaatgatga aatcatagct aaaagacttt
     7921 ctaaagcttt acctagtcat aaaattatag gagtagatgc aagagtgttt ttacgacaaa
     7981 acggttcttt gcattgttct tgtcaaaatc gtttcaaagg tttaagatga gtttgcaaaa
     8041 aaaagcaact cttgtagcaa gtttatgtgc cattgtttta gccttggtta aatttatagt
     8101 aggcttaaca agtggttctg ttgcagtact ttcaagtgcg attgattctt taatggattt
     8161 tgctatttct gcttttaatt ttttggctct taaaaaaagc tcacaaaagg cgaatgaaaa
     8221 ttataatttt ggtttttcta aaattgaagc tttaatgggt ttgttagaag gtgtttttat
     8281 agttggcgtg gggattttta ttttttatga gagtatttta aagatttatt ataaagaaga
     8341 aattaaagat ttaaattcaa gcatctatgt gatgattttt gctttaatta tgactttttt
     8401 tcttgtactt tttttaaatt atgtagctaa aaaaaccaaa agtttaatta tagaaagtga
     8461 tgctttgcat tacaaaacag attgcttaac caatgcttgt actttagggg ctttggtttt
     8521 gatttatttt acaaatttac atattattga tgctattttt gggatagtga tcagtcttta
     8581 tacggcattt tctgctttta aaatcattaa aaaagcttta gcttttttaa tggatgaggc
     8641 tttacctaag gaacaagtgg ataaaatttg tactttgatt tctaataatc ctgaaataat
     8701 ttcctatcat gaattaaaga cgcgtaaaac tccaagttgt aattatttaa gcgtgcattt
     8761 ggttttttgc cctataattt cgcttttaaa tgcgcataaa atttcagatg aaatagaaga
     8821 aggtgtgcgt aagatgtttg aaaatgaaaa atgggatata caaattcatt tagatcctta
     8881 tgatgatgca gaacaagaaa ggcaaagaca atgaaaatcg ctttaataca acaaaaattt
     8941 catttaaata aagaacaaac tataaaaaaa acttgcgaat ttatagaaga agcctctaaa
     9001 caaggagctg agcttgtttg cttaggagaa cttcatcaaa gtgagtattt ttgtcaaagt
     9061 gaaaatgtgg atttttttga ctatgctaat gattatgaaa aagatgtgaa attttgggca
     9121 aatatagcta gaaaaaatca aatagtgctt attgcttcat tgtttgaaaa acgaagtgcc
     9181 ggactttatc ataatactgc agtggttttt gaaaaagatg gttctatagc aggcaaatat
     9241 cgcaaaatgc acatacccga tgatccttgt ttttatgaaa aattttattt tactcctgga
     9301 gatttgggtt ttgaacctat aaatacaagt ttaggtaagc ttggagtgct tatttgttgg
     9361 gatcagtggt atcctgaagc agcaagaatt atggctttaa aaggagctga gattcttatt
     9421 tatcccacgg caattggttg gtttgataag gataaagatg aagaaaaaca aagacagctc
     9481 aatgcttggc ttggcgtaca aaaaggacat gctatagcta atggtttata tgtagtagct
     9541 atcaatagag taggttttga aaaagatgta agcgggatag aagagggcat tagattttgg
     9601 ggaaattctt ttgtttttgg ccctcaaggt gaagaacttt gtcttttaga ttctcaaaac
     9661 gaatgtgtaa aaatcataga aatagataaa aaaagaagtg aaaatgtgcg tcgttggtgg
     9721 ccttttttgc gagatagacg catagaatat tttgcagatt taactaaaag atttattgat
     9781 taaatcaata aatcttattt gttttgtata ttttcaagat agctttttat ttgctctttt
     9841 tcttgttcat ttaaatttat aaaacttatt tctttaagtc ttgataaaag caaattatct
     9901 tctaaaattt cattttttcc tatttctaaa gaagtgatga cgctagaact tatgagaagt
     9961 ctttgggttg catcttttct taagccccat atattatgta tggcaatatt attatctgta
    10021 atttgtcctg cataaagcat aatatgtcca ggtaaataaa gtaagcttaa ataagctttt
    10081 ccaaagcggt ttaaaaaatc ttttttttga gaattgctaa gagtgcttat atcaaaatga
    10141 ttaaaagaat ttttttgtgc agctgaattt cttggtagat aaagtccaaa agctgaaaag
    10201 atatcacgag ttagtaaaga acaatctctt tcaaaattat aaccgcccca gccataaggc
    10261 aaatttaaaa cttgtgaaag ttgatttttt aaatttttat cattgaattg taaaggaaat
    10321 ttagatacat cttttttaga aattttatat tttttagaac ctatttttcc ataaaaatag
    10381 tttttatctt ctttgtagta aggatagata gcaccaattc tactttcaaa gaaaaattta
    10441 ccatcctcgc tatagatagc aaatttttct tttagtggtg tgataaagtt gagattttca
    10501 tagattttcg ctctatcgtt tgagaaaaat tccaaatttt tactttcaac aaatccaaat
    10561 ccagcttcac ctaaaacaaa agcataacgc ttatctttac taaaatgtga aattaagaca
    10621 ggggatccag tatttaaaat gccatcgctt gcatagtcaa aaggaattcc ttcattttca
    10681 aaaaaaggat tttttaagat agctctttgg gttggaagat ttttaatgat tgtattttgg
    10741 ataatcaaag ctttttgatt aagtttgcca aattcttgga tatttgcgtt atttatagca
    10801 tttttaaacc atgaaagcgg aataatttgt ttattgaaaa aataataagt attttttgaa
    10861 tttaaatata aaggaaagga ccaaaaaata ttttgtcctt tgtagttttt aaatgaatca
    10921 tgccaagggt taaagaaata ttttttatat cgttttgcat caaaattaat attgtaagta
    10981 aattgtggta aaatgcttac attttgttcg tattcaagtt ttgcataatg tttattttca
    11041 tttttttgtt ctaaattttc atgatgaagc gaagttaaat tttttgttga acaagctgtt
    11101 aaaaatagca ctataaaagt aaaatataaa caagatttca taatcaacct tttagaaaaa
    11161 atagttataa ttaaagctaa ggaaatataa tgcttgataa actagaaaaa attttagctt
    11221 atgataatgt ttttttaagt ggtggcgctg gagttggtaa aagctttttg acaaatgagc
    11281 ttatcaaatc ttatagaaaa caaaaaaaat tagccatagc tcttggttct agtgctctat
    11341 cggcatttaa tataggcggt gttactttac acagcttttt ttgtttaggg tattgtgatg
    11401 atatgatgaa attaagtgca ttggatcgca atcaaaaaca aaaagaaaaa ttaacaaaac
    11461 ttaaagagct tttaaaaacg attgagctta ttattatcga tgaaatttcc atggttagcg
    11521 caaatgtttt tgaaatgata ggctttagac ttaaaaattc tcaatttaat ggaaaaattt
    11581 tagttgttgg agattttttt caactgcctc cagtaattaa agaaaaaaaa gaaactttat
    11641 ttaaccattc ttattatgct ttttcttcat ttttttggca agatttaaat tttaagaata
    11701 ttaaactttc tcaacctaaa agaacgcaaa atatggaatt ttataaccat ttatctttga
    11761 ttagacaagg ttttttagat gaaaaaattt taagcttttt tgaatctttg cgaattgatt
    11821 ataaagaatt agaaaattta gaagatgatt atactttact ttgtggtatc aataaaaaag
    11881 taaacaatat caatcaagaa aaattaagca aacttgagac cccgcttgta tgctttaagg
    11941 ctcaggttaa aaaagaagat aagagaataa aagatgaaga gcttgattct tggattagaa
    12001 gcttaaatat attggaagaa ttaaatatta aaataggcgc tcgtattatt ttttgcgtaa
    12061 ataattggga taagaattat tataatggag agcaaggcat tatagaagat attctttatg
    12121 aagaggagaa aatttatatt agcattatta aaaataatgg gatgaaaatt ttacttgaac
    12181 cttatacttt ttttatggaa gaacttgagc aatcaggtaa agattttgtt gttaatattc
    12241 tcgcaagtgt tacacagttt cctattaaat tagcttatgc tattactata cacaaatcac
    12301 aaggtatgag tattgaaaaa ttagtgtgtg atattgatca tatttttgaa aatggacagc
    12361 tttatg
//
LOCUS       DAQSLY010000042        12365 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.042, whole genome shotgun sequence.
ACCESSION   DAQSLY010000042 DAQSLY010000000
VERSION     DAQSLY010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12365
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.042"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..165)
                     /locus_tag="R2H98_000914"
     CDS             complement(<1..165)
                     /locus_tag="R2H98_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023809.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFII"
     gene            309..593
                     /gene="gatC"
                     /locus_tag="R2H98_000915"
     CDS             309..593
                     /gene="gatC"
                     /locus_tag="R2H98_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEE9023810.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEISVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            661..1224
                     /locus_tag="R2H98_000916"
     CDS             661..1224
                     /locus_tag="R2H98_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEE9023811.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSRLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            1226..1699
                     /locus_tag="R2H98_000917"
     CDS             1226..1699
                     /locus_tag="R2H98_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEE9023812.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDIHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1700..3205
                     /gene="lysS"
                     /locus_tag="R2H98_000918"
     CDS             1700..3205
                     /gene="lysS"
                     /locus_tag="R2H98_000918"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEE9023813.1"
                     /translation="MFDNILEQQRIEKAKELKKLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            3202..4446
                     /locus_tag="R2H98_000919"
     CDS             3202..4446
                     /locus_tag="R2H98_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEE9023814.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            4443..4988
                     /locus_tag="R2H98_000920"
     CDS             4443..4988
                     /locus_tag="R2H98_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEE9023815.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            5002..5838
                     /locus_tag="R2H98_000921"
     CDS             5002..5838
                     /locus_tag="R2H98_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEE9023816.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSLNNNDSTNFAMPDQEVPAEPTATTSENTTPQASAPKQEVKQTAKPKEE
                     AKKQIAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5835..6623
                     /locus_tag="R2H98_000922"
     CDS             5835..6623
                     /locus_tag="R2H98_000922"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEE9023817.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6698..7597)
                     /locus_tag="R2H98_000923"
     CDS             complement(6698..7597)
                     /locus_tag="R2H98_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HEE9023818.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7687..8502
                     /locus_tag="R2H98_000924"
     CDS             7687..8502
                     /locus_tag="R2H98_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEE9023819.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8572..9354
                     /locus_tag="R2H98_000925"
     CDS             8572..9354
                     /locus_tag="R2H98_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEE9023820.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNAKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9338..11329
                     /locus_tag="R2H98_000926"
     CDS             9338..11329
                     /locus_tag="R2H98_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEE9023821.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLEG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11322..12047
                     /locus_tag="R2H98_000927"
     CDS             11322..12047
                     /locus_tag="R2H98_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEE9023822.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRKQLVAQRNK"
     gene            12075..>12365
                     /locus_tag="R2H98_000928"
     CDS             12075..>12365
                     /locus_tag="R2H98_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9023823.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNFFKSGFISKQDLLKALKIL"
BASE COUNT         4274 a         1485 c         2397 g         4209 t
ORIGIN      
        1 gattataaaa tttccagcaa accaagcaac taaaattatc acaacagcag atatataaaa
       61 tttatacttg cgtataaatc tctctccttt gataaaattt tctataaatt gttcttctgt
      121 gttaagttca tttttaacag cttttaaatt atcttttagt cccaaaattt atccttgaaa
      181 aaatattttt atttttgtat agaaaaatta tgatattgta tcatataaat tgcaaaatat
      241 cctaaacaat ttaaagcttt ttatgatata attttcaaaa ttttaacttt tttattaagg
      301 tttaagaaat gcaaatagat gagaaattat taagcaagct tgaaaaatta agtgctttac
      361 aaataacaaa aaacagaaat gaaactattg cacagttaag tgaaattgtg aattttgttg
      421 aaaaattaaa cgaacttgat ttagattccc aagagattag tgtgagtact ataaaaggtg
      481 gagctccttt gaggattgat gagataagaa atagcaatgt tattgatgag gttttagatt
      541 gtgctccaaa aaaacaagaa catttttttg ttgttcctaa aatcatagaa tgattaactt
      601 agcatttagt gcttatttgt agaataaatt taaaacaaaa aaaatcagag agtgattgaa
      661 atgaattttt attggtttga tgcttttatt ttaggattta ccttgctttt agggcttaag
      721 ggtattatca atggtttgat aaaagaaatt tttggacttt tgggtattat tggtggtgtt
      781 tttattgctt caaaatatgc aactcaagca gctgaattta tacaaagtac tttttataag
      841 atagaaaatc aaagcttagc tggatttgct ggatttttag ccatattaat tattttttgg
      901 atagtttgtt tattggtggg taattttctt tctaggttga ttaaattaag tggcctaggt
      961 tttttagatc gtattggtgg ctttatattt ggtggagcaa aaatcttttt aatttttgca
     1021 attttagttt tttgtgtggc aagaattgat tttttaaatg ataaattaga taattttgct
     1081 aaaaatagct atactttaaa tttacttaaa gaaacgggat cttttattat gaatcaacct
     1141 ttaacagaaa atagtctaga tcatgctagt gaaaagttgc aagatattgt aagtgattta
     1201 aacaatactc aaaaagggga gtgatatgct gatagaaaat gtggaatatg atgttttact
     1261 tgagagattt aaaaaaatat taagacaagg cggacttaaa tataccaagc aaagagaagt
     1321 acttttaaaa actctttatc acagtgatat tcattacaca cccgaaagtt tatatatgga
     1381 aatcaaacaa gctgaacctg atttaaatgt aggaattgca actgtttatc gtactttaaa
     1441 tttacttgaa gaagcagaaa tggtaacttc catttctttt ggttcagcag gtaaaaaata
     1501 tgagcttgct aataaacctc accatgatca tatgatatgt aaaaattgcg gaaaaattat
     1561 agagtttgaa aatcctatta tagaaagaca gcaagccttg attgcaaaag aacatggttt
     1621 taaacttaca gggcatttga tgcagcttta tggtgtttgt ggtgattgta ataatcaaaa
     1681 agcaaaggta aaaatataaa tgtttgataa tattttagag cagcaaagaa tagaaaaagc
     1741 taaagagtta aaaaaattag ggattaatcc ttatcctcat tttttagaaa aggaaatgtc
     1801 tttaaagact tttaaggata aattttctta tattttagag caagttgaaa aaagagatga
     1861 aagtgtcaat gctgttgttg caggacgttt gaaacttttg cgtatagctg ggaaatcaat
     1921 ttttgcaaac attgaagatg aggatacaaa tttacaaatt tattttagta aagatagcgt
     1981 aggcgaagag ctttatacga ttttaaaaaa gaatttagag gtgggtgata ttgttttggt
     2041 taaaggtttt ccttttgtaa ctaaaacagg tgaatttagt ttgcatgcaa gcgaagtaaa
     2101 actcgctaca aaagctattg ttcctttacc tgaaaaatat catggattaa cagatattga
     2161 gcaaagatat cgtaaacgtt atgttgatat gataatgaat gtcgaagtta gaaaagattt
     2221 tttagtgcgt tctaaagtgg tgagtttaat ccgtcatttt tttgaaaata aaggcttttt
     2281 agaagtagaa actcctatga tgcatccgat tgcaggtgga gcaaacgcta agccttttgt
     2341 aacttttcat aattctttag gcgtagaaag atttttaaga attgctccag aactttatct
     2401 taaaagactt atagtaggtg gttttgaggc ggtttttgaa atcaatcgtt gttttagaaa
     2461 cgaaggtatg gatttaactc ataatcccga atttacaact atagaatttt attgggccta
     2521 tcataattat aaagatttaa tggatttaac cgaagaactt tttgctttac ttttggataa
     2581 acttaattta ggaaaaacaa tagaatttga tggaaaaatg ataaattttt ccaaaccttt
     2641 tgaaagaata acctataaag acgcactttg taagtatggt ggtttagata gggatttaat
     2701 cgaagataag gaaaaaattc ttactaaatt aaaagcagat ggttttgaag cgaatgaaaa
     2761 gcttgaactt ggacatttgc aagctgaact ttttgacaat tatgtggaag aaaaattgat
     2821 caatcctact tttgtgattg attttcctat ttccataagt cctttatcaa gacgtagcga
     2881 tgaggattct cagattgctg agagatttga gttgtttatt tgcggaagag aattggcaaa
     2941 tggttttaat gagcttaatg atcctcttga tcaatatgag agatttttaa aacaaattga
     3001 agctaaaaat gcaggcgatg aagaggcttg tgaaatggat gaagattttg taaatgcttt
     3061 gggttatgga atgcctccaa cggcagggca gggcataggt atagatagac ttgttatgct
     3121 tttgacaaat aaaaaatcca ttcgtgatgt gatattgttt cctgcaatgc gtccattaaa
     3181 atcagaacta aaggagaaag aatgagttta gaaatgtttg ataaagaaat ttttgattta
     3241 acaaacaaag agttagagcg tcaatgcgaa ggtcttgaaa tgatagcgag tgaaaatttc
     3301 actttacctg aagtaatgga agttatggga agtatcttga cgaacaaata cgcagaaggt
     3361 tatccaggta aaagatatta tggtggttgt gaatttgttg atgagattga aactctagct
     3421 attgaaagat gtaaaaaact ttttaattgt aaatttgcta atgttcagcc taattcaggt
     3481 tctcaagcta atcaaggtgt ttatgcggct ttgattaatc caggtgataa aattttagga
     3541 atggatttaa gtcatggtgg acatttaact catggtgcaa aagtaagttc ttcgggtaaa
     3601 atgtacgaaa gttgttttta cggcgtagaa cttgatggaa gaattgatta tgaaaaagta
     3661 agagaaattg ctaaaaaaga aaagccaaaa ttaatagttt gtggagctag tgcttatgca
     3721 agagtgattg attttgctaa atttagagaa atcgctgatg aagtaggcgc ctatcttttt
     3781 gctgatatag cacatattgc aggtcttgtt gtagcaggcg aacatccaag tccttttcca
     3841 cacgctcatg tagtaagttc aactacgcat aaaactttgc gtggcccaag aggtggtatt
     3901 attatgacaa atgatgaaga gcttgctaaa aaaattaatt ctgccatttt tccaggtatt
     3961 caaggtggtc ctttgatgca tgtaattgct gcaaaagcag taggatttaa atttaatctt
     4021 agcgatgagt ggaaagttta tgcaaaacaa gtaagaacca atgctcaagt tttagctaat
     4081 gttttaatgg atagaaaatt taaacttgtt agcgatggaa cggataatca ccttgtttta
     4141 atgagttttt tagatcgtga atttagtgga aaagatgcag atttagctct tggaaatgca
     4201 ggtattactg caaataaaaa taccgttcca ggagagatta gaagtccttt tatcacaagt
     4261 ggattaagac ttggaactcc agcccttact gccagaggtt ttaaagaaaa agaaatggaa
     4321 attgtgtcaa attatattgc agatatttta gatgatatta ataatgaaaa attacaagag
     4381 aatattaaac aagaattaaa aaaacttgca agtaatttta ttatttatga aagggctatg
     4441 ttttgatttc accaatggat atgtcgctaa ttaaaataat tggcgatcat tattatataa
     4501 gacgcgataa aattgtaaat aaaattacac atagaggtcg cttatttttt gataaatttg
     4561 aaagagttga tgctccttta aatttaaatg tcatgagaga acacgctgct aaaaaaattg
     4621 ttgtcgctca tgatttaata acaaaagata ataaagtaga aaatattgtc tttgattata
     4681 atggttttaa tgctgaaaga ttttatcacc gtgcacaact tattttaaga gaagaaggtt
     4741 ttataaattt cacagcctat aagactaaaa ctccaggaca tttacatctt tatattcaca
     4801 aaggacacac ggcgttaaac gaaggttatt ctttagcgtc taaactttca atgatgtttg
     4861 caagtaaaat gccagtagaa tggaaggtgt ttcctagcat ggatgtacct agggaattta
     4921 atattttaat attgccttat gaggtttatc aaaaagaacg aggaagttct tggtctaagc
     4981 atatgtaaga aaggacaaat tatggaaaat caaaaaaatg aatttgatga tattatttta
     5041 gaaaaaagta ataaaagtga aaaagtaaaa aaaattcttt tacgagttat tgctttagtt
     5101 attttgtttt tagctatcat gatagttatg aagcttatta atggtagtgg tgatgaaaat
     5161 acgcaaaatc aaagtgtatt gccaagtgaa cctatagcaa ctcaagacaa taacaatgat
     5221 acttcttttg aaagtatgcc aattacagat aatacttcag cagaagatca atttgaggca
     5281 ttaagaaaac aatttcaaga tgaacaaaat acaactcaaa atacaacaac ctctagttta
     5341 aataacaatg atagcacaaa ttttgctatg cctgatcaag aagttccagc agaaccaaca
     5401 gcaactactt cagaaaatac cactccacaa gcaagtgctc ctaaacaaga agtaaaacaa
     5461 actgcaaaac ctaaagaaga agcaaaaaaa caaatagctg taaaaaaaga aaaagaaagt
     5521 gcaaaacaaa cccctaaaaa agaacaaaat gcaaatgatt tatttaaaaa tgttgatgct
     5581 aaacctgtac atccaagtgg tttggcatcg ggtatttatg tgcaaatttt ctcagtaagt
     5641 aatttggatc aaaaatcaaa agaacttgct tctgtaaagc aaaaaggtta tgattataaa
     5701 ctttataaaa ctacagttgg aggtaaagaa attaccaagg ttttaatagg accatttgaa
     5761 aaggcagata ttgcagcaga acttgctaaa atccgtaagg atattgcaaa agatgctttt
     5821 tcttttactt taaaatgaaa tttttagcag ttataggcga tcctatttct cactctaaat
     5881 cgcctagaat gcataataat gctattaaag ccttagggct tgatagcatt tatacacgct
     5941 atcatttaag aaatgctaac tgtttaagag aagatttttt taaattagga cttagtggag
     6001 ctaatattac tttgcctttt aaggaaaaag ctttagatat tgctgatgtg aaggatgatt
     6061 ttgctagaaa tattggctca gcaaatactt tatgcttaaa agaagataaa atttacgctt
     6121 ataatactga tgctttaggt tttttagaag ctattaagga ttttgataat ataaaaaaag
     6181 ctttgatttt gggtgctgga ggtacagctt tggcgcttgc ttatgcatta aaacaaaaag
     6241 gcgtagaagt gtatatagct aatcgtagta aagaaagatt taaagatttt ttagcttatc
     6301 caacttatct ttataaaaac ttgcaagatt ttgactttga tttggttata aattcaactt
     6361 ctgctggatt aaaagatgaa aatttacctt gtgatagaga gcttttagat agaattttac
     6421 ctaaagctaa atttgctttt gaggtaattt atggcagaga aacacctttt tatagattgt
     6481 gtaaagagta tcatttaaaa attaaagatg gacttgatat gcttttatgg caaggagttt
     6541 ttgcttttga actttttttt gaaatacaag ataaaagaga gatgataaaa aatgcaatgc
     6601 aacaggcatt gattttaaag tagaatgata gttatttttc ttgtataaga aaatcttatt
     6661 ttttgtgtga gaaagtttaa ttttcccaca agttttatca ttcaaatatt tctaccccat
     6721 cttgattttt actttgatta ttttgatttg ttgaagatgg atttgtagga atattttgtg
     6781 taggcgtgtt ttcaattgta ttattttgat tagaatttgt ttgaggtaag ctttcttcaa
     6841 aggtagcatc gccatcaaaa ctattaaaac cactgtttgt attaggtata gttttgccta
     6901 tgtctgttgc ttttggtaga ttgttataaa gtgtatttaa tgtattttta taaaaagcta
     6961 aaaaactttt atcaatttca aaagcaggtt gctctaaacc tttattgagt tgagttggta
     7021 cggtagagat agtagtttta aacatattaa ctccatcatc atttttaata ggatagttaa
     7081 gcgcaactaa agaatccagt ttggtgctac ttgaaagatt ggttgaattt tgtggattgt
     7141 gtgcatctat aaaatctatt ttacctttaa aatttatacc taaattggat tttacataat
     7201 ctccactcat aaaattgctt gttttttgtg catttttttc ttccgtataa atactgattg
     7261 aacttttaag agtgtagtct ggattagtag taactatttt atagcctttt agttgagcga
     7321 tggttttgat ctgctcttct aaattttgtt ttaaaagatc aatttctttt tctatgcgaa
     7381 ttttaagcac tgaattttca aaataatcag aataattgtt attttgttct atattaatag
     7441 gctcaagagc aatgcttact ccagaatcaa taggttcaac ctttgttgga acttggggtt
     7501 taaaatttgg catagaaaca ttgacaaaat tactgcttgt acccccacaa gctgctaaaa
     7561 ttaacatact actagcaagt aaaatatatt ttttcatttt ttacctttat ttaatgtgtt
     7621 tgtgttaatt atagcaagtt aaagtttttt tgttatattt ttataaaaga aaattaggaa
     7681 agatatatgg aattttggca gcatatttat tcaaatttta atgttatagc ttttagcatc
     7741 tttggtttaa aggtgcattg gtatggcatt atgtatgtta tagctttgct tttggctttg
     7801 cttttggcta aattttttgt aagaaaattt caactagaca ttaatgaaaa acatttggat
     7861 agttatttta tatgggttga aataggggtt attttaggtg caaggcttgg atatattttg
     7921 atttatgatg caaatactat gtattatatt actcatcctt ggcaaatttt taatccttat
     7981 attaatggtg aatttgtagg tattcgaggt atgagttatc atggagcaat tataggattt
     8041 ttgatagcta ctttattgtt ttgcaaaaaa tataaaacaa atccttggat ttttcttgat
     8101 ttggtcgctt taagtgttcc attggcttat gtttttggtc gtataggaaa ttttttaaat
     8161 caagagcttt ttggtcgcat tacaaatgtg ccttggggaa tttatgttga tggagtattg
     8221 cgtcatccat cgcaacttta tgaagcattt ttagaaggta ttgttgtttt tattatagtt
     8281 tatttagcaa gatttaagca aagttttcaa ggggaattga ttcttgttta tgctggtgct
     8341 tattcattgg caagatttat atgtgaattt tatcgcgagc ctgattttgg tataggtttt
     8401 gttttatggg gtatgagtat ggggcaaatt ttaagtttta taatgtttat aacagctttg
     8461 ttagtttata tttgtataaa gtttaaaaaa gtaaatattt aatctatctt aaagactttt
     8521 gtaatataat gaaatggatt ttttttaatt tctttttaca aaggagtaaa gatgcgtgag
     8581 cttatcgaag gttatttggg taagagcatt gagggcaaaa aaagtaaaat gcctgcgaaa
     8641 ttagacttta tccaaagtgc ttcagggctt tttttaggtc tttttatgtg ggtgcatatg
     8701 ctttttgttt ctacaatttt agtcagtgag gattttttta attctgtggt ccatttttta
     8761 gaattaaaat ttgtttatga taatcctgtt atgagttatc ttacttcatt tttagccgcc
     8821 tgtgttttag tggttttttt cgttcatgct ttacttgcaa tgagaaaatt tcctattaat
     8881 tatcgccagt atcaaatact aagaacacac agtaaaaaaa tgaatcacag cgatacttcg
     8941 ttatggtggg ttcaagcttt tacaggtttt attatgtttt tcttaggttc tgctcatctt
     9001 atttttattg taaccaatgc agataaaatt agtggtgata tgtcaggaga tagggttgta
     9061 agtcatttta tgtggctttt ttatgctgtt cttttagtgt gtgttgagct tcacggaagt
     9121 ataggtcttt acagactttg tgttaaatgg ggttggtttg aaggaaaaaa tgcaaaagaa
     9181 agtcgtaaaa agcttaaaac tgctaaatgg ataatcagca ttttcttcct agttttaggt
     9241 gtattaagtc ttgcagcatt tataaaaata ggttatgaaa actaccaaaa tcaaacccaa
     9301 actactgcga tgataaaaaa ctacaatgga gcaaattatg aatatacaat atagtgatgc
     9361 tttagtaata ggcggaggat tagcaggtct tagagcggct attgaagtag caaagagtgg
     9421 ccaaagtgta acacttttaa gtatttgtcc agtgaagcgt tctcactctg cagcggtgca
     9481 aggaggtatg caggcaagtt tagcaaatgg ggcaaaaggt gagggtgata atgaagatct
     9541 tcactttgca gatacagtaa agggaagtga ttggggctgt gatcaagaag tagcaagaat
     9601 gtttgctcaa actgcaccaa aagcagtgcg tgaacttgcg gcttggggtg tgccttggac
     9661 tagagttact aaaggtccaa gaactgttgt aatcaatgca caaaaaactg tgattgaaga
     9721 aaaagaagaa gcgcacgggc ttattaatgc tagagatttt ggtggaacta aaaaatggag
     9781 aacttgctat atcgcagatg caacagggca ttgtatgctt tatggtgtag caaatgaagc
     9841 tattaaacat caagtaaaaa tcattgatag aatggaagca gtaagaatta tccatgatgg
     9901 taaaaaatgc ttaggtgtga tcgctagaga tttaactaat ggacaactca ttgcttatat
     9961 tgcaagagga accatgatag caacaggggg ctatggtaga atttataaac aaactacaaa
    10021 tgcggtaatt tgcgaaggaa cgggtgcagc catcgctctt gaaacagggc tttgcagact
    10081 ttcaaatatg gaagcagtgc aatttcatcc aactcctatt gtaccaagcg gtattttgct
    10141 tactgaaggt tgtcgtggcg atggcggaat tttacgtgac gtggatggat atcgttttat
    10201 gcctgattat gaaccagaga aaaaagaact tgcaagccgt gatgtggtaa gtcgtagaat
    10261 gatggaacat attcgtaaag gcaaaggtgt aaaaagccct tatggggatc atttatggct
    10321 tgatatttct atattgggtc gtgctcatgt ggaaaaaaat ctccgcgatg tacaagatat
    10381 ttgcaaaact ttcaatggta ttgatccagc agatgaaggt ccaaaaggtt gggcgccagt
    10441 tcttccaatg cagcattatt ctatgggtgg aattagaact aaaccaacag gtgaaagtca
    10501 atggctagaa ggactttttg cttgtggaga agcagcttgc tgggatatgc acggatttaa
    10561 tcgtttaggt ggaaattcat gtgctgaaac tgttgtagca ggtatgatag tgggagatta
    10621 ttttgcagat tattgtaaaa ataatggtga agtaattgac acaaatgtag taaaagactt
    10681 cttaactaaa gagtatcaat atttaaaatc tttagtagat aaagaaggta aacataatgt
    10741 ttttgaaatc aaaaatagaa tgaaagaaat catgtgggat aaggtagcta tctttagaac
    10801 aggtgaaggt ttgaaagaag cagtagatga acttgaaaaa ctttataaag attctcaaga
    10861 tgttaaagtg cattgtaaag agcttgattg tgcaaatcca gagcttgaag aagcgtatag
    10921 agtaccaaga atgttaaaaa tagcactttg tgtagcttat ggagcgcttt taagaacaga
    10981 aagtcgtggg gcgcattata gggaagatta tccaaaaaga gatgatttaa attggatgaa
    11041 aagaaccaat actttttggg tagaaggcga aacattacca cgcatagaat atgaagagct
    11101 tgatattatg aaaatggaaa ttccaccagc attccgtgga tatggagcta aaggaaatat
    11161 tatagaaaat cctttaagtg aaaaacgcca agctgaagtg gatgcaatac gtgaaaaaat
    11221 ggaagctgaa ggcaaaggtc gttatgaaat tcaaaacgct ttaatgcctt atgaattaca
    11281 agctaaatat aaagcaccaa accaaagaat aggagttgat tatgagtaga aaattgacaa
    11341 taaaggcatt taaatataat cctttaagca aaatttctaa accacatttt gtgacttatg
    11401 agcttgaaga aactcctttt atgacggttt ttgtatgttt gactttgatc cgtgaaaaaa
    11461 tggatgcgga tctgagtttt gactttgttt gtcgtgcagg gatttgcgga tcttgtgcaa
    11521 tgatgattaa tggagtgcca aaacttgctt gtaaaacttt aactaaagat tatcctgatg
    11581 gagtgataga gcttatgcct atgcctgcat ttaggcatat taaagattta agcgtgaata
    11641 caggcgagtg gtttgaagac atgtgtaagc gtgttgaaag ctgggtgcat aatgaaaaag
    11701 aaactgatat ttctaaactt gaagaacgca ttgagccaga agttgcggat gaaacttttg
    11761 aacttgatcg ttgtatagag tgtggaattt gtgtagcttc ttgtgcaact aaacttatgc
    11821 gcccaaattt catagctgct acaggacttt taagaacagc tagatattta caagatccgc
    11881 atgaccatag aagtgtggaa gatttttatg aattagtagg cgatgatgat ggtgtttttg
    11941 gttgtatgtc attgcttgct tgtgaagata attgccctaa agaattacct ttgcaaagta
    12001 aaatcgctta tatgagaaaa caacttgtcg ctcaaagaaa caaataaatc tttccccttt
    12061 ttaaggggaa gattatgaaa gaattattcc aaaaaatttg gcaaaatgaa cttcaatttt
    12121 taaattttga tgctaaattt caagataaaa gcaaacttga tacggccgag tgtgcgatta
    12181 ttttaagtgt caataaagac aattatgaaa gatattttct cttaaaagaa tttcaagagc
    12241 tttgcaaaaa aattgattta agagtggata tttttagtat acaaaatgct caaatttgta
    12301 ttttaaattt ttttaaatca ggttttattt caaagcaaga tttgcttaag gctctaaaaa
    12361 tttta
//
LOCUS       DAQSLY010000043        12234 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.043, whole genome shotgun sequence.
ACCESSION   DAQSLY010000043 DAQSLY010000000
VERSION     DAQSLY010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12234
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.043"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            29..232
                     /locus_tag="R2H98_000929"
     CDS             29..232
                     /locus_tag="R2H98_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023824.1"
                     /translation="MLLNTPCRGIIDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
     gene            584..2674
                     /locus_tag="R2H98_000930"
     CDS             584..2674
                     /locus_tag="R2H98_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEE9023825.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKARAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLIDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSTSMVDDLQGIYLDIFESSGMENKIGAVDSGLKLKIESLFSK
                     GMALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     IVAIVSYLVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDTKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2671..3210
                     /locus_tag="R2H98_000931"
     CDS             2671..3210
                     /locus_tag="R2H98_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEE9023826.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGYPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            3293..4696
                     /locus_tag="R2H98_000932"
     CDS             3293..4696
                     /locus_tag="R2H98_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEE9023827.1"
                     /translation="MSIYFMHFLISVLPLSILMAFITPNKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4683..5975
                     /locus_tag="R2H98_000933"
     CDS             4683..5975
                     /locus_tag="R2H98_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9023828.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLACFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGAGAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALFGFIFGTALSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5965..7083
                     /locus_tag="R2H98_000934"
     CDS             5965..7083
                     /locus_tag="R2H98_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEE9023829.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNIEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     SNGKNTKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKVKT
                     QAISNEFIDAKPISSVSLSEGLVLRKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            7080..7733
                     /locus_tag="R2H98_000935"
     CDS             7080..7733
                     /locus_tag="R2H98_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9023830.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7730..8218
                     /locus_tag="R2H98_000936"
     CDS             7730..8218
                     /locus_tag="R2H98_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEE9023831.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLTS
                     LL"
     gene            8179..8682
                     /gene="traF"
                     /locus_tag="R2H98_000937"
     CDS             8179..8682
                     /gene="traF"
                     /locus_tag="R2H98_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEE9023832.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFAFVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8691..9128)
                     /locus_tag="R2H98_000938"
     CDS             complement(8691..9128)
                     /locus_tag="R2H98_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEE9023833.1"
                     /translation="MKKTILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYG
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIVWLLENKPKDVIGI
                     SAPDMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(9428..9844)
                     /locus_tag="R2H98_000939"
     CDS             complement(9428..9844)
                     /locus_tag="R2H98_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023834.1"
                     /translation="MKKLGLVLAALVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVGPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SNGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
     gene            complement(10380..10667)
                     /locus_tag="R2H98_000940"
     CDS             complement(10380..10667)
                     /locus_tag="R2H98_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002926587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEE9023835.1"
                     /translation="MQILESDLFTNELNIILSFIVRKESIKVKNTFKNDLYKALKKLD
                     FMPYKFRKSLAFDDENVRDFIFKGYVIPYKIDKEKDLIIILGIYKENLPNF"
     gene            complement(10667..10897)
                     /locus_tag="R2H98_000941"
     CDS             complement(10667..10897)
                     /locus_tag="R2H98_000941"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023836.1"
                     /translation="MQTITIKAKEQEINKLLDILKELNISYELESNNYKKALNDYESG
                     KSWQETKQELHKALNDYESGKAKLTPLGSEWL"
     gene            complement(11339..11707)
                     /locus_tag="R2H98_000942"
     CDS             complement(11339..11707)
                     /locus_tag="R2H98_000942"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023837.1"
                     /translation="MEKVDYCRMSCLDGKINAFKYLLDLFLSDLENENDVKTCNMFEN
                     DTSIEYVKDMLMMMLDKIKEIVIDQDNCHHNIDMYASVYHEIIKDELGKEFTPKELKE
                     LHKKQEERLLKELLEGSKKK"
     gene            11846..12073
                     /locus_tag="R2H98_000943"
     CDS             11846..12073
                     /locus_tag="R2H98_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023838.1"
                     /translation="MTRLEFDEKIKQLGLTRKIFADIAKVSYSGISTNWKDDKEIPSW
                     VEPFLYYYEKGLALDELLKILEKYKNKEKLE"
BASE COUNT         4304 a         1792 c         1795 g         4343 t
ORIGIN      
        1 ttttaaatga gaaatcagga gcttgctaat gttacttaac acgccttgca gggggataat
       61 agatacaaat tttgaaagca aaagaattag cataacttca actttaaaat ttcaagaaaa
      121 aaaagaaaaa gtagaagcta aggctgagaa agaagaagca aataaagaca atagcaattc
      181 tacaaacaca aataccaata aaaaagataa acttttggat atatctgctt agtctaaaat
      241 atactatagc tatatctcct taaagaatac gcaataaatg attttttgat ttttattaag
      301 cttttaaaac atcgaaaaaa ggaaaaatta aaaaacacaa aaacaatatc ccaaagtcca
      361 tagcttagaa gaagaccttg cgatacttaa aaacaaccca tattaaatca caaaaataaa
      421 atatatttaa atatttatta aaatacattt tataatttaa taaaaaaata ttatcaacat
      481 aaaagcttat tttttagttc tatttaagat ttttagtatt atactagcca ttatttattt
      541 tgataataaa tattattttt atcaaaaatc aaggataatg ataatgaaaa tttttaaaat
      601 tatattttta attataagta tttttttatc aagctcagct tttgctaggg tagatgatta
      661 tattaatgaa gcaaatctta tcaaagatat gctaaaacaa agcatagaaa cttataaaaa
      721 gggcgataat ctaggcgcca aaaagcttag cgaagatgcg tattttcaac attttgaaaa
      781 tatggaaggc tcaataggaa gaaacatagg aagaaaagct atcactatgg agcgtaaatt
      841 tgtaaatttg cgtcgcatgt ataaagatga agctcctttg acacaaatta atgctttaat
      901 tgatagtctt tattatgatc ttgatgaagt agctccgatt ttacaaaatg gatatcgttt
      961 aaaagcagaa gcaagcgata taaactatga taaggctaga gctgaaaaat caagcctaga
     1021 agccaatgcc aaacgcgaag ctgatgcaga agctttaatc gcacaaatga tgggtgtaga
     1081 taaaaaagat ttagcacaaa gctctttaac cacccaagct cctatacctg taaataatga
     1141 tacaagcaaa cttatagatg ataatgcaag caccgattta caagctgccg ctgcaatgga
     1201 cgtaagattg caatttatac tagataatat ctctaccaaa ttttcacagg cagctaatgc
     1261 ttttaaagaa aaaaactacc aaactagtaa agatttttta aatgatgcct tatttagtga
     1321 ttatcgcaat accaaagtag aaattttagt aaataaattt accaaagcag gaaacgatca
     1381 aaaaattcaa caagccatac gcacccttat acgccaaatc aacgatgcaa aaatagatga
     1441 aaaaggctta agagatggct tagataacat agaagaacaa atttttgatg ttttcttaca
     1501 aattccaaat tcagaacttt caagtttgca aatttcaggc tttaatgatg aaacaaaagg
     1561 caaagattat gccaaagttt ctaatgatat caaacttgct ttagatgaaa ttttaaaaaa
     1621 ttatgatggc tttagcactt ctatggtaga tgatttacaa ggaatttatc tagatatttt
     1681 tgaatcaagc ggtatggaaa ataaaatcgg tgctgtagat agtggcttaa aacttaaaat
     1741 agaaagttta ttttccaaag gcatggcact gattaaagca agtgcagata aaaaagagct
     1801 tgaagctact tttaatgact tagaacaact catagccagc agcgtggata aaattcaaga
     1861 ttctactcct tattcgctgt ttatatgggc tttaggtatt attttgcgtg aaggcttgga
     1921 agctttgatt atcattgtag ccattgtttc ttatcttgtg caaagtggca acaaaaatcg
     1981 tctaaatatc gcctatagtg ctctttttac aggagtgatt ttaagtttta ttaccgcttt
     2041 tggagtttct tggctattta aagaaaatgc aggtcaaagt agagagctta tagaaggtat
     2101 taccatgctt atagccgtat tactactctt ttatgtgggc ttttggctac tttcaaacgc
     2161 acaaaataaa aaatggacaa gctttatcaa acaaggtgct atagatgcta tatcaaataa
     2221 tagcgcaaaa accctttgga ttaccgtatt tttagctgtt tatagagaag gtgcagaaac
     2281 tgtgcttttt tatcaagcct tgctttttga tactaaaaca agcactgatt ttggtgctgt
     2341 ttttggcgga cttggacttg gaattttaat acttattgtt ttatattttc ttttaaaagc
     2401 aggagccatt cgcatacctg taaaacaatt tttctatatc acttcttaca ttatttttta
     2461 catggttttt gtttttacag gcaaaggcat agccgaactc atagaaggaa aagtcatcat
     2521 tcctagtctt atacctatga attttgaacc gattttatgg cttggaattt atccttacta
     2581 tgaaacttta atccctcaat ttatagtttt gatcatgcta attattggca ttttaataac
     2641 aaaacaaatt tcaaaaaaag gagtaaaatc atgataaaaa aagttttatc agtagttgct
     2701 gcagctgcgg ttattagtac aaatttattt gcaggcgaag tgccgatcgg ctatccaaaa
     2761 gaacttaatg gcatggaaat agccgctgtt tatttacaac ctattgaaat ggagccaaga
     2821 ggtattgact tagctgcatc tttagcagat attcacctag aagctgacat tcacgcactt
     2881 aaaaacaatc caaatggttt tccagaaggt ttttggatgc cttatttaac tatagcttat
     2941 gaacttaaaa ataccgacac aggtgcaatt aaacgtggaa ctttgatgcc tatggtggct
     3001 gatgatggtc ctcactatgg tgcaaatatt gctatggaaa aagataaaaa aggtggcttt
     3061 ggcgtaggaa attatgaact tactttttat atctcaaatc cagaaaaaca aggttttgga
     3121 cgccatgttg atgaagaaac aggtgtgggt aagtggtttg aaccttttaa agtagattat
     3181 aaattcaaat acacaggcac gccaaaataa ttttacgctc ggattttccg agtgtttgaa
     3241 tatttttatt tttatttgaa aaattaaaat aacaatgttt aaagagtaaa ttatgagtat
     3301 atattttatg cattttctta tcagtgtttt accgctaagt attttaatgg cctttatcac
     3361 tcctaataaa aaatatattt ttaaaagttt tttagtagtt tttttgggct ttttatttgg
     3421 atattttgct ttttttatcg cagcacaatt tttaaaaacc gaaaatttaa tctttaattt
     3481 tgattttgtt tttataggtt tattgctagt aagctttata ttttattttt ggaaaaaaat
     3541 tgaaatttta aattttattt tattgggaat tttaagtttt tgcaccgctt tgcattatta
     3601 ttttttaagt caagatttcc ctatttttac tagctcttta atcgatagcg aaggtataag
     3661 ttctttaggt tttattgctt tagccttgct tgtttgtatt ttgattttct tctttttaaa
     3721 atggcaaaaa aattttaatc aaaaaacaag ctttatgctg tttttactgc ttatccttat
     3781 agaaagcgat aaagctctag ccaatatctt gcttacttta atgcgaaatt ccatcataga
     3841 aactcatgct tttttggtga gttttgtagg aaaaagtaat tattttggtg tttttggaat
     3901 ttatgtttat ttaattttca tcactttttt agcattctta agcttaaaaa ttcgcaaaaa
     3961 aaatataagc aaaaaacaaa ttttagatat aaattatcgc aaaaacgaag ctaaaacaag
     4021 tcttattaat cgctattttt ccagtgtttt tatctcctgt gttataagtt tttgcattgt
     4081 tttatacttt tttatggtaa gctctaagcc tttaaccata gatgagccta aagaaatttt
     4141 acccgataag aatggcaaat ttatctttga tatagctctt ttaagggaca acaaactcca
     4201 ccgctttgct tatatcagtg ctgaaggcaa agtgataagg ttttttctta tcaacaaaag
     4261 agaagataag gattctcctg tagctgtttt tgatgcttgt atgatttgtg gagatatggg
     4321 ctatatcaaa aaagatggac aactcatttg catttcttgc aatgtgcgta ttttcttgcc
     4381 aagtgtaggt aaaagcgggg gttgcaatcc tatcccactc aaatacgaat acgatggtaa
     4441 aaaaatcacc atagatgtta aagatgtaat agcgggatct aattatttta gtcaaatcaa
     4501 agaaattgaa gtgcaagatc ctgtatcaaa aacaaaggtt ataaacaccc aagctccttt
     4561 ttcttatagc tataaaggga ttacttatta tttttcaaat caaaacaact atgaagaatt
     4621 taaaaaagat cctacaaaat atgtagaaga aaacgaagcc caatttttaa tccaaaggag
     4681 aaatgatgtt ggctaaaatg atttttaact ctatatttaa aaacaaaatt caaaaatttt
     4741 tagcctttct tgcttgtttt ttagccacgc ttttgctctc tactatgcta aatattaccc
     4801 taagtatagg tgatgaagta actaaacaac tcaaaagcta tggctctaat atccttgttt
     4861 tacccaaagg ctcaagcctt agtatagaaa taggtaatga actttatgaa cccttaaaaa
     4921 acaaaaacta cctagaagaa aaaaatttat atatgattaa agacatttat tggcgtaaca
     4981 acatcaccgc acttgctcct tttttggaag gtaaaatcac aattgaaaac tcccaacaaa
     5041 aagcacttat ttatggtact tattttcaaa aagccataaa aattaaagat gatgatgatt
     5101 ttatcacagg tataaaaagt ctttatcctt atttagcagt gcaaggagaa tgggcaaaag
     5161 atgatagcaa tgaaatcatg ctaggcgaag actttgctaa aaacaataaa ttaaaattag
     5221 gagatactat caaactcata ggagaaaaca atcaaagcaa agaagcaaaa atcgtaggca
     5281 ttttacttca tgccaatcct aaaatgtcaa ataaaatcat cgctccttta aatttagctc
     5341 aagatttact caacaaacaa gggctttact caagtgcaga agtaagagct tttaccatac
     5401 ctgaatcagc cctttctgaa aaagtacgtc gcatgggaga agaaaaatta gatcagttag
     5461 aatatgacaa atggtattgc tcagcttatg taggctcaat cgctagtcaa attagcgatg
     5521 gcttaccagg tgctggtgca aaagctctaa atgctataag cgatgctcaa agcttggtgg
     5581 ttaaaaagat ccaatcctta atgggcatta cttgcattat ttgtcttatt gttgcaagca
     5641 ttgcgatttc aagtctaatg agttctgaaa ttcatcgcag aaagaaagaa ataggacttt
     5701 taaaagtact tggtgctaat acttttcaaa tttatctcat ctttgctagt gaaaatttaa
     5761 tcgtagcttt atttgctgct ttatttggct ttatttttgg cacagcactt tctcaaatca
     5821 tcagtcttag tatttttgga tattttattg atatagcctt tatagcttta cctttaagct
     5881 ttatttttgc aggacttatt gccttacttg gttgcttgct tcctataaaa aatatcacac
     5941 aactttcagc tgcaggagtg ctttatggta gataagtttt tcctcaatga gctttttaaa
     6001 agcattagct tttcttatca aagacttttt attatagttt taagtgtttt tataggagca
     6061 cttacttgct cagctttttt aaatatttat tttgatatcg acatcaaact ttctaaagaa
     6121 ttaaaagctt atggagcaaa tgtaatgata agtcccaagc aggatgaaaa ttttatctcc
     6181 aatattgagt atgaaaaaat aaaagaaaat ttaaaggcta gagctttaac tccttttttg
     6241 tatgattttt taaatttagg cagtacaagc ggggtggttt taggcactga ttttagggct
     6301 ttaaaaatca ctaaaccttt tttagaagtt aaagaaggaa gcttttctct aaatgatttt
     6361 gatgaaaatt cagccttttt aggagttaat ttagccaagc aactaggcct aaaagcaggc
     6421 aatgaacttc aaatttataa tccaagcaac ggaaaaaaca caaaacttac cataaaaggc
     6481 atactttcaa gcaatgatga atttgatagc attgttttag ctcctttaag cgtggtgcaa
     6541 aatttaagcg atagagccgg tattaactat gctaatgctg tagtttatgg aaattttgat
     6601 gaagttaaag tcaaaacaca agcaatcagc aatgaattca tcgatgcaaa acctatatct
     6661 tcagtatcct taagtgaagg tttagtgctt agaaaaatca aagctttaat gtttttaatc
     6721 atacttgtag tattgatcat agttactact agcgttaata caactttaag ctctattata
     6781 ttttctcgca aaaaagaaat cgcactgcgt ttagccttgg gtgcgaaaaa aagtgaaatt
     6841 tttaaacttt ttgctagtga atgctttata gtaagttttt ttgctagttt aatcggagct
     6901 ttttgtggaa tatttttagc caatgtcttt ggttatttga tttttaattc tagtattgat
     6961 tttagattta tagctgtttt tatagcctta atcatttctt tgatttttgc ctttttggct
     7021 gcattttttc ctataaaaag agcattaaaa atcaatgtgt gtgaaaattt gaaaggtgaa
     7081 tgatgaaaaa agaacttatt aaaataaaca atttaaataa agaatttggc aaagttaaag
     7141 ccttaaacaa tatcaactta agcgtctatg aaggagaatg gcttgccatc atgggtccat
     7201 cgggaagtgg aaaatcaacg cttttaaaca tactatcact catggatact ccaagctctg
     7261 gagagtatat cttggataat gaaaacctag agcaaatgga tgaagagcaa aaaatcacct
     7321 tgcgtcgtga aaaaatagga cttgtctttc aacaatttca tcttatcccc tatcttaacg
     7381 ctttagaaaa tgttatgctc tctcagtact atcactcaag tgtagatgaa gaagatgcca
     7441 aaatggttct tgaaaaagta ggactttcac atagactcac tcatttacct agccaattaa
     7501 gtggcggaga acaacaaaga gtttgcatag caagagcttt gatcaacaac ccagagcttt
     7561 tgctcgcaga tgaacccaca ggaaatttag atgaagctaa tgaacaaatc gttcttcaaa
     7621 ccttgcaaaa attaaaaaat gaaggcaaaa ccatagtttt aatcacacac aatcctgatt
     7681 tagccaaatt cgcagatcga acccttatct tacaacatgg ggtgttaaaa tgaaaaaaag
     7741 ccttttaatc ttaagcattt tgttcttgct caatgcttgt tcttttgaaa attcaaaaga
     7801 tactggaaaa gttggagaaa aaagcgctga aatttcagct aaagatacct taggaaaagc
     7861 tgtaaaactt gctgatgata atacaagttt aaaagtctta gtcttttttc aaaatggctg
     7921 cccttcttgc ttaaaagaac tcccttcttt agatgaattc atacaaaatc accccaataa
     7981 aatcagcgtt tatgctataa attccatcga taatgccaat gtggttaagg ttttagccga
     8041 acaatttgac tttaaaaatg taaaagtttt aaaagacgat cttaaaatca ccaatgatcg
     8101 ttacgctgtg tttgcaaccc ctactaccat catcattaaa gatggaatga taaaagatag
     8161 aattttagga gaaaaaccat gggaattttt cgaatccaag cttacttctt tgctttaatt
     8221 atagctttat tttttgtagc ttgtgatagt ggagaaaatt ttaaagcttt aaatagtgat
     8281 aaaacctata attttgccta caatggtttt gaaaaaagcc taaaactaaa tgataaagca
     8341 caaaattttg ccttcgtatt cttcacaaaa gattgcggag tttgtaaaga acaaattcct
     8401 attttacaga atttggctaa aaattatgat tttaatatct ttgtggtttt aggcgatgca
     8461 aatgatgcaa acgatgcaaa agcttgggct gatgaaaaag gtttatctaa tttagcaatg
     8521 ttttatgaaa aaagagcagc taaatacctt tcaagtgcca ttggggaaat atatggagta
     8581 cctgtgctta gttttttcaa agaaggaaaa atggatgaaa aattcatagg cttaactcct
     8641 tatagcatac ttgaaaaaga aatcaaaaaa gtaaaaagct aaaatttact ttaaagcttt
     8701 ttatctccta taaaatatcc ataaagctca tagcttccat cttttttcat caaaattaca
     8761 ggatattttt cactataacc ttgttccatt cctgggcttc cttgtggcat gtcaggagct
     8821 gaaattccta taacatcttt aggtttgttt tcaagcaacc atactatggc actttcagga
     8881 acatgccctt caatagcata gccttcgatc acacccgtat ggcaactttg atactcatct
     8941 tttataccca ttttttcttt gattttaaga aaatcattgg ttttatgaac actaacccca
     9001 taacccttag ctttcatata atcagcccaa agatcacaac agccacaagt aggactttca
     9061 taaacttgta tttccttagc ttgcgtaaga gtgagtaaaa aaagaatggt taaaattgtt
     9121 tttttcataa ttgctatcct aagtaaaaaa tatataataa tacttttata aagttaatat
     9181 catcacattt ttaacactaa aaatgaattt acaaaaattt aatcaagaaa aagattttta
     9241 atgagtgctg attttgtctt tacagcaaag atataaaaga taaaacgatt taaaaaacta
     9301 gaaattttta acttaaaaag cttaaaattt agatatactt tatacttact atgttttttc
     9361 atagtatgtt ctaatggtgg atttccgcca agagtgaaaa ctcaaggcgg atttttattt
     9421 gcaatattta cttaatagaa taattatgat cagctgtgcc tccacataaa taccccttct
     9481 tatcaaaact tgcaatttcg caagaaagag tagataatct agctctttta ccattactag
     9541 ttaatataag aacttgttta taataaacat aattgctttt atctgaatat tctttttgta
     9601 ttatagcttg agttgaatta taagttcttg gaccaacttt tgcaacaata tctgcttcat
     9661 aaaaagttgc ctttttaaaa agtggctcag ttaaagttga ttttatactc tcttggaaat
     9721 atttgttttg catttcgctt gctgaaactg gaactaaatc ttttttattg ataactatca
     9781 aatctgcaaa tgctgacaca ttcaaagcaa ccaaagctgc taaaactaaa cctaattttt
     9841 tcattttatc tccttgaatt gaattttgta tatttgaatt atttttcaaa tcttttgcaa
     9901 gataattttt aaatttatct aaattaaatt tgcattttat ctaacaatca taagaaattt
     9961 taaaatgaaa taaaaattta tgagaaatca actcttgttt gaaaatgata aaagtaagtg
    10021 gtgcagatga aaggacttga aatatataac taaaaataaa tacctatttt atagtatttt
    10081 tataatagtt acctttatta agttaccttt ttatttgtat agaaatttaa agaatatcct
    10141 ttgaaaactt aaatcaaatt tgaaaactac acttttcaag ctttatttat ttatatcatc
    10201 attaaagccc tattttatag ggttattaaa aattatatta aggtattttt aaagccattt
    10261 aagtttattt agcttaaata gaatgtttca cgcttttttt atttaagttt tctcattttt
    10321 ttaagctttt ttagcttgaa acttaaactc attttttcaa aagcttaaaa agtaattttt
    10381 taaaagtttg gtaggttttc tttataaata cctaagataa taattaaatc tttttctttg
    10441 tctattttgt aaggtattac ataaccttta aatataaaat ctcttacatt ctcatcatca
    10501 aaggctaaag actttctaaa cttataaggc ataaaatcaa gcttttttaa agccttgtat
    10561 aaatcatttt taaaagtgtt tttaactttt atactttcct ttctcacaat aaaggataaa
    10621 ataatattta attcatttgt aaataaatcg ctttctagga tttgcattac agccactcac
    10681 tgcctaatgg cgttaattta gccttaccgc tttcataatc atttaaagcc ttatgtagtt
    10741 cttgttttgt ttcttgccaa cttttgccgc tttcataatc atttaaagcc tttttatagt
    10801 tgttgctttc tagttcataa ctgatattta actcttttaa aatatctaaa agcttgttta
    10861 tttcttgttc ttttgctttt attgttatgg tttgcatagc ttttccttta ctgattcaaa
    10921 gtttagttat tataacttat tttattttat aagcctttaa aagaaaagct atttaattaa
    10981 aatactttga caaatctata taagttaaag ttaggtagct tttaagccct aggtttaatc
    11041 tacccattag ccccccccca ctaattagct catcttttta agtggtgttt tatacaaaag
    11101 ccctaaaatt agcttctttt atcgtttcaa cctttcttaa aattatctta aatattaaat
    11161 taatttttgt atatttcaaa gtttgtttta tatggagtaa attttattta catcatcttt
    11221 tttatatact ttttataagg attttattgc gtggtttatt tgtatttgaa tttagaagat
    11281 taaaaataga tttttgccct taaaggtaag ggtagcaagt taaacttact accttgtttt
    11341 atttcttttt actcccttca agtaattctt ttaataatct ctcttcttgt ttcttatgca
    11401 gttctttaag ctctttaggg gtaaattctt tacctaactc atcttttata atttcatgat
    11461 aaacacttgc gtacatatct atattgtgat gacaattatc ttggtcgata acaatttctt
    11521 ttatcttatc aagcatcatc ataagcatat cttttacata ctctatactt gtatcattct
    11581 caaacatatt acaagtttta acatcgtttt cgttttccaa atcacttaaa aataaatcta
    11641 aaagatattt aaaagcgttt attttgccat ctaggcaact cattctacaa taatctacct
    11701 tttccatttt ttctcctttt tttatgtatt taactaaaaa taaagtgtaa ttttatattt
    11761 ttttactaaa aaagtcaata tatttttatg ttatttaata aaaaaatgtt ataattattt
    11821 tataattaac taaaaaggtt ataaaatgac aagattagaa tttgatgaaa aaattaagca
    11881 attaggatta acaagaaaaa tatttgcaga tatagcaaaa gtaagttata gcggaatttc
    11941 tacaaattgg aaagatgaca aagaaattcc atcgtgggtg gagccttttt tatattatta
    12001 tgaaaaaggt ttagccttag atgagttatt aaaaatacta gaaaaataca aaaacaaaga
    12061 gaagttagaa taagccttta aaagtttatt ttcactctta aagttcttac atttttttaa
    12121 aatcttttct ttttccatac tatgtttttc catctatgga aaaacaaaaa atcttacttt
    12181 tccatttttt tatccttttg tattgattta ataattaaaa atcacaatta tata
//
LOCUS       DAQSLY010000044        11976 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.044, whole genome shotgun sequence.
ACCESSION   DAQSLY010000044 DAQSLY010000000
VERSION     DAQSLY010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11976
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.044"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            154..660
                     /locus_tag="R2H98_000944"
     CDS             154..660
                     /locus_tag="R2H98_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HEE9023839.1"
                     /translation="MKYFIDKNDNNQIYAYEDEVSDEQIKTGLTPISEEEFNALTSPP
                     KSEEELLNEAKELKINEINAKKESVLNGGFSFKGKIYQSSNEDQLRINGAVTNALVNP
                     NLIPYIDWIALDNTTTRFSVDEFKLFASSMAYFVQETIFKASALKEKARNAQSKEELD
                     LIVWESEK"
     gene            657..1028
                     /locus_tag="R2H98_000945"
     CDS             657..1028
                     /locus_tag="R2H98_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HEE9023840.1"
                     /translation="MTKAELKRVCVKPYDKDRFEVIQDYEFALLSFKGIVPKGFKTDG
                     ASIPRLFWSLFPPFKSEYFSACVVHDFLCEKANSRTDYRTADLALKEAMTLLGCSRLK
                     IFVFYHSCNLYHAIKCLIKGK"
     gene            1128..2141
                     /locus_tag="R2H98_000946"
     CDS             1128..2141
                     /locus_tag="R2H98_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023841.1"
                     /translation="MKDYGISFIPDINQGSKEPSEPIVSDKLNAQKVNELIDKKLKLF
                     KEELVNKEELKSLIEEILQDQNFQNTNIKISKTPPNYNTQAKVGEIWAVVESKKQLFI
                     CTANDNDFTSWVDLLGDGSNDIAPKEKIIITFDNTTTGGQYGGCMSDLRLGFENGFAT
                     PNKVQDEYENAKFTMTKDGNGLNRSDFTIDSNPIAGENQILGTIKTSGIYQETYHKIA
                     HVFKKYNGGSDECCLWSSSGTREVSIELENTPMPNKLFARGNGYYGQTEITNVRVKKS
                     IFIGEQEIQSEDFNVEKLEASADTYGDYAFLFEISKQDQIVMKKELNLNPKKTKNTKN
                     VKK"
     gene            2152..3345
                     /locus_tag="R2H98_000947"
     CDS             2152..3345
                     /locus_tag="R2H98_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HEE9023842.1"
                     /translation="MAANYGVNFNISNGAASPIKVQSDTPIGIAGAIKGASKEMIYTK
                     AGYESVDSFPIFAFSNVSKAKEFVNDLIKENNLQDFRLLDTLECINLQNVSNVIIISF
                     FEESEESENTLTNIVNAIEAFKKAKHKTGFSPDLIIAPYYSHEAGVKAKLESVASSMN
                     ITAIVDLYATNVGEAINTMEAFSSKRLIATWPQVQILNTQGKYAYVPQSPIIAGLIAH
                     TDGDKEYGFSDSYSNRVMNGVTGTEYFIEFINGFDCDAERLRNAHISTCILSEGYRSW
                     GGETSHEDTIWQDLARVRTFDRIALAGQKAAFKAIDKKASELYFIKISIEELLRDLKG
                     AKVLIGYEVSWDEERNTDANVSAGKFYLNIKMMNNPIVKQITLEFIYSDEWASDLIKT
                     ISADS"
     gene            3372..3881
                     /locus_tag="R2H98_000948"
     CDS             3372..3881
                     /locus_tag="R2H98_000948"
                     /inference="COORDINATES: protein motif:HMM:NF016846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HEE9023843.1"
                     /translation="MKRIIGEVIQEGNIYIDGQGYLGVVRNLKLPDIEQEMIETKGVL
                     GANYSSGVLKPLEISFKLAVVDPVLYAAFFHTTFSEIKAPLLFRESVHKGGKNYGISA
                     EFLGEFISISESDHESGKEVEAEIKMAVHFYMQRRNNIPIITYDHKNTILMINGVDMM
                     SDVRSNLTL"
     gene            4034..4273
                     /locus_tag="R2H98_000949"
     CDS             4034..4273
                     /locus_tag="R2H98_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HEE9023844.1"
                     /translation="MKEKIIKLENGEELKMREPNVRVLKNATNKGEKEMEQTICMIAA
                     LTNKQESEIEDLNLKDFKALQDALKDFLVEAGVIA"
     gene            complement(4385..4690)
                     /locus_tag="R2H98_000950"
     CDS             complement(4385..4690)
                     /locus_tag="R2H98_000950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023845.1"
                     /translation="MKVLKFINDDIISHIALLLTTLIPAFYISYQSASDGFFNTMAIF
                     IFSYFISIIITAILVMIMPPIALLLILPTWLIVISLDFILFAILKIYFLKNKTIKNS"
     gene            4732..6948
                     /locus_tag="R2H98_000951"
     CDS             4732..6948
                     /locus_tag="R2H98_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEE9023846.1"
                     /translation="MENAGSIGIGVILGLAIKNASAVGKVVKDFSNLEKIAAKTKLGI
                     NGLQKELNTLKLNANLRAELKAQRKGLQDEFLSLGNVIRGGIIGKGLGEAISFESAMA
                     DVRKVVNFDEGDDIKKMSADILKMSQTLPVTANELAAIAAAGGQIGLGSKDVREFTNL
                     VTKMKVAFDMSAEDVGDSVAKIKNILGISLKDMEDLGDSINNLSDNSASKAREIIDVM
                     KRTAAAGKQIGFTKEQIAALSSSFISLGKGPEVAGTAINSLYRVLATADNIGTKTESA
                     FAKLGISGAFLKQASFDDPQKALDMFLQRISKLDQKEQMGVLVDIFGREFADDMATLV
                     GGLDTYKEALKNAGDEAKKGSLQREFDTRAATTENSIILMKNAFNSLAVNLGSVFLPA
                     ISWVSAGISYLVNSITYITGLVPGLNGVLGGLIATFLLAKPAVLAYAIAKNYLKDCTI
                     LLKSALIKTRIHLLAFRNSCILSNITLKAKTVTTTIYTTSLKALSFVLGGLNKVFKAV
                     AIGIRVLSMAMMSNPIGLILGGIAIVAGLIIANWDKVKSWFKSFIEWLKPVWEPIYNV
                     IKAVFDKCALVFTSFKDIIMSVASPLAEFLNSIWQGVGDFFYSIFGSLFDWFASKLSW
                     VGDMISSISGFIKDALDFVGLGDDEEVKISQSEQNKEKVFTTNTYKDELAETKSINHT
                     PSFNNGNINISVNGTFNIATKDGNFNMQEFANTIQKSVFDALRKQEQNKINTTIYG"
     gene            6952..7440
                     /locus_tag="R2H98_000952"
     CDS             6952..7440
                     /locus_tag="R2H98_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HEE9023847.1"
                     /translation="MSEYIEIKGLENFFKACDKLIDMDKHGQSIMAGAGESIRNSIID
                     SFKNERSIFNGKWQSLKPATIKQKIKDGKNKGILKRDGELSNALNWQSEPTKSGVKVF
                     NNIQTENGFKYGYVHQWGNRKRKIPQRAFLPIDNNKVLHPSIRSVIYKDTKDFIEKIV
                     KK"
     gene            7642..8457
                     /locus_tag="R2H98_000953"
     CDS             7642..8457
                     /locus_tag="R2H98_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEE9023848.1"
                     /translation="MKNNTDKFLKTSTLTKPTRTTLKAPFAWVGGKNYLAKEIIALMP
                     EHKSYIEVFGGALSVFYQKSASKIEVINDINDELINLHLCIRNKPQSLANVLNSMIIS
                     RKIFHMLKNKEIKPKNDLERAAFYFYLINTSFGSSMGQFAMSKQRAPKRLYRDFSLHT
                     KRLKNASIENKSFEYILKEYDYNEALFYLDPPYVGTENYYKNTGGFGLKEHELLCNLL
                     KNIKGKFMLSYNDCELIRELYKDFNIKELKVRYSLNNNVLKRKESKELLIMNF"
     gene            complement(8485..8772)
                     /locus_tag="R2H98_000954"
     CDS             complement(8485..8772)
                     /locus_tag="R2H98_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023849.1"
                     /translation="MSKVIVDIKKGFSKTFINAICNHNNELVLEYLKNGMSATKECMG
                     EEPMFYAITHNNFGAILLLLKYGAILDKNYLEECNKDFSKEALKFLSSLLK"
     gene            complement(8852..9046)
                     /locus_tag="R2H98_000955"
     CDS             complement(8852..9046)
                     /locus_tag="R2H98_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023850.1"
                     /translation="MKYPNVYVKLVGEDGNAFSILARVSKALKKAGVSKEEISKFQKE
                     AMSSDYNHLLNVVQDWVNTN"
     gene            complement(9056..9376)
                     /locus_tag="R2H98_000956"
     CDS             complement(9056..9376)
                     /locus_tag="R2H98_000956"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023851.1"
                     /translation="MKDIKNYTDKELKEKIIQDLESEFRILYKKLLKEKDYLARDNIL
                     ELMTIYNMGINSYSIAKNLEMNEDKSLIQVPLFERYIIGRKFVVKYNDEKQRYELKST
                     FCEF"
     gene            complement(9457..10086)
                     /locus_tag="R2H98_000957"
     CDS             complement(9457..10086)
                     /locus_tag="R2H98_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HEE9023852.1"
                     /translation="MQMQEVIEKLKDILASEGKRDLKTKDIAKELGINPDTFNSMKFR
                     NSIPYPQILNFLNERNISINYFFYGVSPKDQLECENKYKILKLYKTNASLGGGGINDL
                     IDCSELIVDEKLLNFFGSKECEFITCYGESMEPLIKDGSICVIDRNKAFKNKSICVIN
                     TRDGLFIKQVLKQDDGVILHSLNPLYKDIFYKNGDFLLIGVVIGELSKM"
     gene            10381..10581
                     /locus_tag="R2H98_000958"
     CDS             10381..10581
                     /locus_tag="R2H98_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023853.1"
                     /translation="MGIVTSIRKYKNTLSKNVTILEGKKHFWDIKFKIKARVYPSFKQ
                     HLITFLGQSGHFGIFGIFYALD"
     gene            10687..10923
                     /locus_tag="R2H98_000959"
                     /pseudo
     CDS             10687..10923
                     /locus_tag="R2H98_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
     gene            complement(10915..>11976)
                     /locus_tag="R2H98_000960"
     CDS             complement(10915..>11976)
                     /locus_tag="R2H98_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023854.1"
                     /translation="CLFDLLESRLYLSFLSEFADQNDQFLSNVYAKLLNSITDFEKNV
                     QKITSVKLAIIIPEKTIKSYSNTIINSSIAYLLRQRAEIKVKVFLTGTEDSDKIRAAL
                     DAAQAQGYQYAIAGFTLKGANELKNYSGNMKIFIPTIHKNNIQISNQNIIFGSIDYDA
                     QIATLLSKSNANIAIFSDGSALSSNLNSRILAQNNNARIYTIEGEKLDFSRLLRSQGG
                     VNNASIFFNAPLIKTALASSQLRIYNIHPYVLLSTQINYNPTFLSLTQQGDRENFIIA
                     NSINNHDDNLVYLNEIFNQSIDYNWIAYATSIGVDYFYTEFLNKKSESLFDEKIKNSQ
                     VDYKVRLMQGKQASFEELK"
BASE COUNT         4325 a         1580 c         2073 g         3998 t
ORIGIN      
        1 caatacacta attcaacagg taaatatatt ccattaacac attatgaagg tattttgaaa
       61 ccaaatgaca catataaaat agaattgttt aatattgtta tggataagcc aaatattgag
      121 gcaacaattt taaatgtcca ataaggagaa aaaatgaaat attttataga caaaaacgat
      181 aataatcaaa tttatgctta tgaggatgaa gtgagcgatg agcaaattaa aacaggttta
      241 acacctatta gcgaagaaga gtttaatgct ttaacaagtc ctcctaaaag tgaagaagag
      301 cttttaaacg aggcaaaaga attaaaaata aatgaaatca atgctaaaaa agaaagcgtt
      361 ttaaatggtg gattttcttt taaaggtaaa atctatcaaa gttctaatga agatcagtta
      421 agaattaatg gagcagtaac caatgctctt gttaatccta atttaattcc ttatattgat
      481 tggattgcgc ttgataatac aactacaaga tttagcgtag atgagtttaa actctttgca
      541 agtagcatgg cttattttgt gcaagagact atttttaaag caagtgcttt aaaagaaaaa
      601 gctagaaatg cacaaagcaa agaagaactt gatttaattg tttgggagag tgaaaaatga
      661 ctaaagcaga attaaaaaga gtatgcgtaa agccatacga taaggacagg tttgaagtga
      721 tacaagatta tgagtttgct ttgcttagtt ttaaaggcat tgtgccaaaa ggatttaaaa
      781 ctgatggtgc aagtatccca cgcctttttt ggtctttgtt tccacctttt aaaagtgagt
      841 attttagcgc ttgtgtggtg catgattttt tatgcgaaaa agcaaattca agaactgatt
      901 ataggacagc tgatttagca ttaaaagaag ctatgacttt gcttggatgt tcaagactta
      961 aaatctttgt attttatcat tcttgcaatc tttatcatgc aataaaatgc ttgataaaag
     1021 gaaaataaaa aaaggtgagc tacccacgca gtgggacggg ggctttagta aaagcgactt
     1081 tgggcggatt ttattcgcac aaagtgaaag cataaaaagg agttaaaatg aaagattatg
     1141 gaatttcttt tattccagat attaatcaag gctcaaaaga gccaagtgaa cctatagtta
     1201 gtgataagct taatgctcaa aaagttaatg agcttataga taaaaaacta aagcttttta
     1261 aagaagagct tgttaataaa gaggagctta aaagtctcat tgaggaaatt ttacaagatc
     1321 aaaatttcca aaatacaaac ataaaaatat caaaaacccc acctaactac aatacacaag
     1381 ctaaagtagg agaaatttgg gcggttgtag aaagtaaaaa gcaattattt atttgcactg
     1441 ctaatgataa tgattttaca agctgggttg atttactagg agatggtagc aatgatattg
     1501 cccctaaaga aaaaatcatc atcacatttg ataacactac aacaggtgga caatatgggg
     1561 gttgtatgag tgatttaaga cttggttttg aaaatggttt tgctactcca aataaagttc
     1621 aagatgagta tgaaaacgca aaatttacta tgactaaaga tggtaatggt cttaatagaa
     1681 gcgattttac tatagattct aatcctattg caggagaaaa ccaaatttta ggaacgatta
     1741 agacaagtgg tatttatcaa gaaacctatc acaaaatcgc ccatgtgttt aaaaaatata
     1801 atggtggttc tgatgagtgt tgcttatggt ctagctcagg aacgagagag gtaagcatag
     1861 aacttgaaaa tacaccaatg cctaataagc tttttgctag aggtaatgga tattatggtc
     1921 aaacagaaat taccaatgta agagtaaaaa aatccatttt tataggtgag caagaaattc
     1981 aaagtgaaga ttttaatgtt gaaaagttag aagctagtgc tgatacttat ggagattatg
     2041 cttttttatt tgaaatttct aaacaagatc aaattgttat gaaaaaagag cttaatttaa
     2101 atcctaaaaa aacaaaaaat acaaaaaatg taaagaaata aggagtgaat aatggcagca
     2161 aattatggag ttaattttaa tattagcaat ggtgcggcaa gtcctattaa agtgcaaagt
     2221 gatacgccta taggtattgc tggggctata aaaggtgcaa gtaaagaaat gatttacaca
     2281 aaggctggtt atgaaagcgt ggatagcttt ccaatctttg ccttttcaaa tgtaagcaaa
     2341 gcaaaagaat ttgtaaacga tttaatcaaa gaaaataact tacaagattt tagactttta
     2401 gatactttag aatgtatcaa tctacaaaat gtttctaatg tcataattat cagctttttt
     2461 gaagaaagcg aggaaagtga aaacacttta accaatattg ttaatgccat agaagctttt
     2521 aaaaaagcaa agcataaaac aggttttagc cctgatttaa tcattgctcc ttattactca
     2581 catgaagcag gagtaaaggc taagcttgaa agtgtggcaa gttctatgaa tatcacagct
     2641 attgtggatc tttacgctac aaatgttggc gaagctatta atacaatgga ggcttttagc
     2701 tctaaaagat taattgccac ttggccacag gttcaaatct taaatacaca aggaaaatac
     2761 gcttatgttc cacaatctcc tatcatcgca ggtttaatag ctcatacaga tggagataaa
     2821 gaatatggct ttagtgattc ttactcaaat agagtgatga atggggttac tggcacagag
     2881 tattttatag agtttatcaa tggctttgat tgtgatgcag aaagactaag aaacgctcat
     2941 atttcaactt gtattttaag tgaaggttat cgctcttggg gtggggaaac tagccatgaa
     3001 gatacgattt ggcaagattt agctcgtgta agaacctttg atcgcatagc tctagcagga
     3061 caaaaagcag cttttaaggc tattgataaa aaagcaagtg aattatattt tataaaaatc
     3121 agcattgaag aattgctaag agatttaaaa ggagctaagg ttttaattgg ctatgaggta
     3181 agctgggatg aagaaagaaa cacagatgcc aatgtgagtg ctggtaagtt ttatctaaat
     3241 ataaaaatga tgaataatcc aatcgttaaa caaatcactt tagagttcat ctactctgat
     3301 gaatgggcga gtgatttgat taaaactatt agtgcggata gttaataaat ttttacaagg
     3361 agaaaataaa aatgaaaaga ataattggcg aagttataca ggaaggtaat atttatatag
     3421 atggtcaagg ttatcttgga gtggttagaa atttaaaatt gcctgatata gaacaagaga
     3481 tgattgaaac caaaggagtt ttaggagcaa attatagtag cggggtttta aagcctttag
     3541 aaattagctt taaattagcc gttgttgatc cagtgcttta tgcggctttc tttcatacta
     3601 cttttagcga gattaaagct cctttgcttt ttagagaaag tgttcacaaa ggtggaaaaa
     3661 actatggtat tagtgctgag tttttaggag agtttataag cataagtgaa agtgatcatg
     3721 aaagtggaaa agaggtggaa gctgaaatta aaatggcagt tcatttttac atgcaacgcc
     3781 gcaataacat tccaatcatt acctacgatc ataaaaacac tattttaatg ataaatgggg
     3841 tggatatgat gagtgatgta agaagcaatt taacccttta aacactgatt aatcggagtt
     3901 taattaataa tactgggatt ttaggattaa agtttggctt tttgggcatt gcgtagcaat
     3961 gggtggggaa gcctttagtt gcttctcagg cggaattact tccgccataa agaaggataa
     4021 aaaggaaaga aaaatgaaag aaaaaataat caaacttgaa aatggcgaag aattaaaaat
     4081 gagagagcca aatgtgcgtg tactcaaaaa cgccactaat aaaggtgaaa aagaaatgga
     4141 gcaaactatt tgtatgatag ctgcacttac caataagcaa gaaagtgaaa ttgaagattt
     4201 gaatcttaaa gattttaaag ctttacagga cgctcttaaa gattttttgg tagaagcagg
     4261 agttatagct tagaggctat agcccttata agtcatactt tgcattgggg attaaatgaa
     4321 gttttagatt taagcttaga tgagtttgaa gaagctttag caatttcaaa agaattttta
     4381 aaggctaaga gtttttgatt gttttatttt tcaaaaaata aatttttaaa atagcaaaaa
     4441 gaataaaatc taaacttatt acaattagcc aagtgggtaa aataagcaat aaagcaatgg
     4501 gtggcattat catcactaaa atagcagtta tgataatgct tataaaataa gaaaaaataa
     4561 aaatagccat tgtattaaaa aaaccatcac ttgcactttg atagcttatg taaaaagcag
     4621 gtatgagcgt tgttaataat aaggcaatat gtgaaattat atcatcgtta ataaatttta
     4681 aaactttcat agtaaagatt ttaaaataca atcgcttaaa aagggttgaa tatggaaaat
     4741 gctggaagta ttggaattgg tgttatttta ggactagcga ttaaaaacgc aagtgccgtt
     4801 ggcaaggtag ttaaagattt tagcaattta gaaaaaatag cagcaaaaac taaactcggc
     4861 attaatggat tgcaaaaaga attaaacact cttaaactca atgccaattt aagagcggaa
     4921 ttaaaagctc aaagaaaagg tttgcaagat gagtttttaa gtttaggtaa tgttattcga
     4981 ggtggaatta ttggtaaggg tttaggagaa gctatcagct ttgaatctgc tatggctgat
     5041 gtgagaaagg ttgtgaattt tgatgaaggc gatgatatta aaaaaatgag tgctgatatc
     5101 cttaagatgt ctcaaacttt acctgttact gccaatgagt tagcagctat agctgctgct
     5161 ggaggacaga ttggacttgg ttcaaaagat gtaagagaat ttacaaatct tgtaactaaa
     5221 atgaaagtgg catttgatat gagcgctgaa gatgtgggag atagcgttgc gaaaattaaa
     5281 aatattttag gcatttcttt aaaagacatg gaggatttag gcgatagtat taataatctt
     5341 tcagataata gtgcatctaa ggctagagag attattgatg ttatgaaaag aactgcagct
     5401 gctggaaagc aaataggatt tactaaagaa caaattgcgg ctttaagctc ttcttttata
     5461 tctttaggta agggacctga agtagcagga acagctatta atagtcttta ccgcgtttta
     5521 gccacagctg ataatatagg aactaaaact gaatctgctt ttgcaaagct tggtataagt
     5581 ggagcatttt taaaacaagc cagttttgat gatcctcaaa aagctttaga tatgttttta
     5641 caaagaattt caaaactaga ccaaaaagaa caaatgggcg ttttagttga tatttttggt
     5701 cgtgaatttg cagatgatat ggcaactctt gttggagggc ttgacactta taaagaagct
     5761 ttaaaaaatg ctggtgatga agcaaaaaaa ggctctttac aaagggaatt tgatacaagg
     5821 gctgctacca ctgaaaattc tattatatta atgaaaaatg cttttaattc cttagctgtt
     5881 aatttaggtt cggttttttt acctgcaata tcatgggtga gtgctggaat ttcttatctt
     5941 gttaatagta tcacttatat tacaggactt gtccctggtc ttaatggggt tttaggagga
     6001 cttatagcca cttttttgct cgccaaacct gcagtcttag cttatgctat tgctaaaaac
     6061 tatcttaaag attgcaccat tttacttaaa agtgctttga ttaaaacaag aatacatctt
     6121 ttagcttttc gtaattcttg tatattatct aatattactt taaaagcaaa aaccgtcaca
     6181 actactattt acacaacctc ccttaaagcc ttatcttttg ttttaggtgg gcttaataaa
     6241 gtttttaaag ccgtagctat tggtattaga gtgttaagca tggctatgat gagtaatccc
     6301 atcggtctta ttttaggggg cattgcaata gtggctgggc ttattattgc aaattgggat
     6361 aaggttaagt cttggtttaa atcttttata gaatggctta aacctgtttg ggagcctata
     6421 tacaatgtca ttaaagcagt atttgataaa tgtgcccttg tatttacaag ttttaaagat
     6481 attattatga gtgttgcttc tccattagct gagtttttaa attctatttg gcaaggtgtt
     6541 ggcgatttct tttatagtat ttttggttct ttatttgatt ggtttgcttc taagctttct
     6601 tgggtaggag atatgatctc atctataagt ggctttataa aagatgctct tgattttgta
     6661 gggcttggag atgatgaaga agttaagata agccaaagtg aacaaaacaa agaaaaagtc
     6721 tttactacaa acacttataa agatgaatta gctgagacaa aaagtataaa tcatactcca
     6781 agctttaata atggcaatat caatataagc gttaatggta cttttaacat agcgactaaa
     6841 gatggcaatt ttaatatgca agaatttgca aatactatac aaaaaagtgt atttgacgct
     6901 ttaagaaagc aagaacaaaa caaaattaac actacaattt atggataaaa tatgagtgaa
     6961 tatatagaaa taaaagggct tgaaaacttt tttaaagctt gtgataaatt aatagatatg
     7021 gataaacacg ggcaaagcat tatggcgggt gctggagaga gtataagaaa tagcattata
     7081 gactctttta aaaacgaacg cagtattttt aatggaaaat ggcaaagctt aaaaccagct
     7141 accataaaac aaaagataaa agatggtaag aataaaggaa ttttaaaaag agatggagaa
     7201 ttaagcaatg ctttaaattg gcaaagcgaa cctactaaaa gtggcgtaaa agtctttaat
     7261 aatatacaga ctgaaaatgg ctttaaatat ggttatgttc atcaatgggg aaacagaaaa
     7321 agaaaaattc ctcaaagagc ttttttaccc atagataata acaaagtctt gcacccaagt
     7381 ataagaagtg tgatttataa agatactaag gattttattg aaaaaattgt taagaagtga
     7441 caatatgggg cattgcatag caaggaatgg tcgggcgtgg cctttagtga tgcgactttt
     7501 tggaaaatcg caatttttca aaaagtgtta gcaagaatgg caaggaagac taaagccttc
     7561 ctttttctaa aaactagcaa aagcattata gctttatttt taaagactag ctttttaaat
     7621 tttattttga aaggagtttg tatgaaaaat aatacagaca aatttctaaa aactagcaca
     7681 cttactaaac ctacaagaac tacactaaaa gctccgtttg cttgggtggg tggtaaaaac
     7741 tatttagcta aagaaatcat cgctttaatg cctgagcata aaagctatat tgaagtcttt
     7801 ggtggagctt taagtgtttt ttatcaaaaa agtgcttcaa aaatagaagt cattaacgac
     7861 attaacgacg agcttattaa tttacatctt tgtataagaa ataaacccca aagcctagca
     7921 aatgtgctta attctatgat aataagtaga aaaatctttc atatgcttaa aaataaagaa
     7981 atcaagccaa aaaatgactt agaaagggct gctttttatt tttatcttat caatacttct
     8041 tttggatcaa gcatgggaca atttgccatg agtaagcaaa gagcacccaa aagattatat
     8101 agagacttta gcttacatac aaaaagactt aaaaatgcca gtattgaaaa taaaagcttt
     8161 gaatatattt taaaagaata tgattacaat gaagctttat tttatttaga tccaccttat
     8221 gtaggaactg agaattatta taaaaacaca ggaggttttg ggctaaaaga acatgaactt
     8281 ttatgtaatt tgcttaaaaa tatcaaaggt aaatttatgc tttcttataa tgattgtgag
     8341 cttataagag agctttataa agattttaat attaaggaat taaaagtaag gtattcttta
     8401 aataataatg ttttaaaaag aaaagaaagt aaagagcttt tgattatgaa tttttaaaag
     8461 ctaagagagt aaaaatactc tcttttattt tagcaaagag cttaaaaact ttagagcttc
     8521 tttgctaaaa tctttattgc attcttctag gtaattttta tctaaaatag caccgtattt
     8581 taataaaagc aaaatcgctc caaaattatt atgagttatt gcataaaaca taggctcttc
     8641 gcccatgcat tctttagttg cactcatacc atttttaaga tattctaaaa caagttcatt
     8701 gttatggttg caaattgcgt ttataaaagt cttgctaaaa ccttttttga tatctactat
     8761 tactttactc atcttatctc cttttgtttt gataagacaa gattagcttc gcttggctga
     8821 atgtgtgctg ttgtttgaca tctttttgaa atcaatttgt attaacccaa tcttgcacca
     8881 catttaataa atgattataa tcactactca tggcttcttt ttgaaattta cttatttctt
     8941 ctttgcttac acctgctttt tttaaagcct tgcttactct tgctaaaata ctaaaagcat
     9001 tgccatcttc tcctactaat ttcacataaa cattagggta tttcatcttt tctccttaaa
     9061 attcacaaaa ggtacttttt aattcgtatc tttgtttttc atcattatat ttaactacaa
     9121 attttctacc tataatatat ctttcaaaca aaggaacttg tataagactt ttatcttcat
     9181 tcatctcaag gtttttagcg attgaataag agtttatgcc catattataa atagtcataa
     9241 gctctaatat attatcccta gcaagataat ctttttcttt taaaagcttt ttgtacaaaa
     9301 tcctaaattc actctctaaa tcttgtatga ttttttcttt taattcttta tcggtgtaat
     9361 ttttgatatc tttcatgttt atctcctttt ttgatagaac aaccttgtgt tttacattct
     9421 ctgtgagatt agcttgactt agcttattgt gtgctgttac atcttagaaa gttctccaat
     9481 tactacacca attagtaaaa aatctccatt tttataaaat atatctttat ataaaggatt
     9541 taaagagtgt aaaatcactc catcatcttg ttttaaaact tgttttataa aaagtccatc
     9601 tctagtatta atcacacaaa tgcttttatt tttaaaagcc ttatttctat ctattacaca
     9661 aatacttcca tcttttataa gtggctccat gctttctcca tagcaagtga taaactcaca
     9721 ctctttacta ccaaaaaagt ttaataattt ttcatctaca ataagctcag agcaatctat
     9781 taaatcattt attccgcctc cgcctaaact cgcatttgtt ttataaagct ttaaaatttt
     9841 atatttattc tcacattcta attgatcttt aggagagaca ccatagaaaa aataattaat
     9901 gcttatattc ctctcattta aaaagtttaa gatttgtgga taaggaatgg agtttctaaa
     9961 tttcatggaa ttaaaagtat caggattgat tcctaattct ttggctatat cttttgtttt
    10021 taaatctctt ttgccttcac tcgcaagtat atcctttaac ttttcaatca cttcttgcat
    10081 ttgcatttta aatcctttga ttttaacttc aaagaattta aacataaaat ttcaaaaagc
    10141 aattaaaaac ttttgatttg aaagattttt aatataagag cttgaaaaat ctaacttcaa
    10201 gctctctaaa ttgatattta aaaacatctt actaagctat ttttttaaca agatttcata
    10261 aaaaattgct tcattacttt ttaagttttc tatgtaacta tcttccaaag cttaatgcca
    10321 tagatagtta catgctattt ttatataaaa agtggttaaa ctatgattat atagtgtttt
    10381 atggggatag ttacatcaat aagaaaatat aaaaatactt taagcaaaaa tgtaactatc
    10441 ctagagggta aaaaacactt ttgggatata aaatttaaaa tcaaagctcg tgtttatcca
    10501 tcttttaaac agcatttaat cacttttttg ggacaaagcg gacattttgg gatatttggg
    10561 atattttacg ctttagatta ggaaagataa aaagtcattt ttgtaagctt taaaatccta
    10621 ttatttggga tttttgctaa aattatttag ggatagttac atgttctttt taaaataccc
    10681 cttacacatt ttttacttac aaaagcaaat tgcaatttct taaaacctgc aaaacttgga
    10741 gatatgatag agattaaaac aaaaatttta gaagtcaaaa atgcttctgt ggaaatttta
    10801 caagaaattt ataaagatga aattttgttt tttaaaatgg aattaacttt agcttttatt
    10861 aaaaacgaaa aaccagctag aatggatatg cagttaaaaa agctctttga agaattattt
    10921 taattcttca aagcttgctt gcttaccttg cataagacgc actttgtaat caacttgaga
    10981 atttttgatt ttctcatcaa ataaactttc gcttttttta tttaggaatt cggtataaaa
    11041 gtaatcaact cctatgctag tagcataagc aatccagtta taatctatac tttgattaaa
    11101 aatttcatta agatagacta agttatcatc gtggttattg atagaattag caatgataaa
    11161 attttctcta tctccttgtt gtgttaaact taaaaatgtt ggattatagt tgatttgagt
    11221 ggataaaagc acataaggat gaatgttata aattcttagt tgagaacttg ctagagctgt
    11281 tttgatcaat ggagcgttaa aaaatattga ggcattatta actccacctt gtgatcttaa
    11341 aagtctgctg aaatcaagct tctcgccttc tatggtatat attctagcat tattattttg
    11401 agcaagaatt cttgaattta gattgcttga taaggcagag ccatcgctaa atattgcgat
    11461 attagcattt gatttgctta aaagtgtggc aatttgagca tcatagtcaa tacttccaaa
    11521 aataatattt tgatttgaaa tttgtatgtt gtttttatgg atagtcggta tgaaaatttt
    11581 catatttcct gagtaatttt tcaactcatt agcacctttt aaggtaaatc cagctatggc
    11641 atactgatat ccttgagctt gtgctgcatc aagcgcggct cgaattttat cactatcttc
    11701 tgtgccggtt aaaaaaactt ttactttgat ttcagctctt tgtcttaaaa gataggctat
    11761 gcttgaattt attatagtat ttgagtagct ttttatggtt ttttctggga taattatcgc
    11821 aagtttgaca gaagtaattt tttgaacatt tttttcaaaa tcagtaatgg aatttaataa
    11881 ttttgcataa acattagata aaaattgatc gttttgatct gcaaattcac ttaaaaaact
    11941 aagatataat cttgattcta aaagatcaaa aagaca
//
LOCUS       DAQSLY010000045        11260 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.045, whole genome shotgun sequence.
ACCESSION   DAQSLY010000045 DAQSLY010000000
VERSION     DAQSLY010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11260
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.045"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..605)
                     /locus_tag="R2H98_000961"
     CDS             complement(<1..605)
                     /locus_tag="R2H98_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEE9023855.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGV"
     gene            complement(602..1720)
                     /gene="carA"
                     /locus_tag="R2H98_000962"
     CDS             complement(602..1720)
                     /gene="carA"
                     /locus_tag="R2H98_000962"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEE9023856.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1720..2271)
                     /locus_tag="R2H98_000963"
     CDS             complement(1720..2271)
                     /locus_tag="R2H98_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEE9023857.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2364..2882)
                     /locus_tag="R2H98_000964"
     CDS             complement(2364..2882)
                     /locus_tag="R2H98_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEE9023858.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(2875..3303)
                     /locus_tag="R2H98_000965"
     CDS             complement(2875..3303)
                     /locus_tag="R2H98_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEE9023859.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(3300..4550)
                     /locus_tag="R2H98_000966"
     CDS             complement(3300..4550)
                     /locus_tag="R2H98_000966"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEE9023860.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4578..4675)
                     /locus_tag="R2H98_000967"
     tRNA            complement(4578..4675)
                     /locus_tag="R2H98_000967"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4639..4641),aa:Sec,seq:tca)
     gene            4815..6023
                     /gene="yedE"
                     /locus_tag="R2H98_000968"
     CDS             4815..6023
                     /gene="yedE"
                     /locus_tag="R2H98_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEE9023861.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTKFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6027..6254
                     /gene="yedF"
                     /locus_tag="R2H98_000969"
     CDS             6027..6254
                     /gene="yedF"
                     /locus_tag="R2H98_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEE9023862.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(6270..7739)
                     /gene="putP"
                     /locus_tag="R2H98_000970"
     CDS             complement(6270..7739)
                     /gene="putP"
                     /locus_tag="R2H98_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEE9023863.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(7757..11245)
                     /locus_tag="R2H98_000971"
     CDS             complement(7757..11245)
                     /locus_tag="R2H98_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEE9023864.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILVQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIKDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIISKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         3746 a         2094 c         1388 g         4032 t
ORIGIN      
        1 acgccatacg ataaataatt aaataaattt ttcaaaaaat cactaaaaaa ctgtgaaatt
       61 ttagaaaaaa ataacatcgc aggtaaagtt gatattccaa aaatcatcat taccaaaata
      121 ccttcaaaaa tattttgctt actcattgca ttggctataa aaaaatacac caatccacaa
      181 ggaacaaaac catttgaaaa tcctaaaaat atggctgatt ttaatccttt aaaattttta
      241 gattttttaa taattttctt tacaaaacta tcaaaaaaaa cattattttc aataaaagat
      301 aacatattgc ctctaaaaat aagagcaaaa cccaaaatca tcataaatat accaagaata
      361 aaaaatgaca aactttgaac cttagcattg attgccaaga tattcccaaa agtcccaaaa
      421 attatcccta aaacaatata agcaaaaatt ctaaacaaat tataaataaa agttaataaa
      481 aataaattat tgctttttga attcaaattt ataaaaagta aattaaaacc accacacata
      541 gaatagcagt gtccaaaact agataaaaaa gcaacgctga taatagctaa aaaatctata
      601 ctcacatcaa attcataaat tctttaaaaa tatacttact ttcatgagga cctgaagaac
      661 tttctggatg atgttgcact gaaataatag gatagtcttt atatcttact ccttcaacat
      721 tatcgccaaa taaatttcta tgagtgatat gagccacttg agctaattct tctggaacat
      781 tataattatg attttgtgcg gtaatttcta ccgtttttgt atcaagattg atcacaggat
      841 gatttgctcc atgttgtcca aatttcattt tataagtttc atatccaaaa gcattactta
      901 aaagctggtg acctaagcaa attccaagca taggaatttt agcttctgca agttttttaa
      961 tctctgcaat ctcttgtttt aaaatccttg gctcacctgg accattagaa agaaacacgc
     1021 cttgaatttc acctttttta tacagagtaa tcaactcatc tgctttaaca ttatatggat
     1081 aaacttctac ttcaaaacct acttctacaa gttcatttaa gatatttgtt ttaacaccat
     1141 aatctataac agcaactttt ttctcacttc ttttagcatc attaaatttt tgaaaactag
     1201 cgttccaaac gccttgttta tgagaataat ttttcttagt gctaacttct tttacaaaat
     1261 ttacttcatc aatttttgct gatttttcta aggcgatttt taaatcttct ttatttgaaa
     1321 tttcagttga aattacagct cttaaattgc cattatttct tatcattttt actagatatc
     1381 tcgtatcaag ttcataaatt cctatttttc catgtttttc aagataatct tgcagacttt
     1441 ctttagcgcg aaaatttgaa aaactggaac ttaattcacg cattaaaaca ccacttgcaa
     1501 aaatttcctt gctttcatta tcattttcat tggttcccac tataccaatt tctggcatgg
     1561 aaaatacgat aaattgccct gcataagaag gatctgaaat aatttcttga taccctgtta
     1621 aagaagtgtt aaatacaagc tctccaaaaa aagtaccgct ctttccaaaa gccttagcac
     1681 ttaaaaaaat atcattttct aaataaatat aagccttcat taaaacatac ctttttttct
     1741 gagctcttct tgatagagtt tttcaaagat aagatcgtat tcttcgctac ctggaatagg
     1801 ttttgtttta taattgctaa ttttctcata aacctcatct tcaagttttt cataaatttt
     1861 aagataagac tctatgcttg aaaagattaa atttttaact ctattttcac tcactataaa
     1921 attaatataa tcattctcta caagttcttc taaaatttga tgcgctagat gattatgtct
     1981 atcttcagaa tctaaaatca cattaaattc aggagctaac tttttcttca caagccaaaa
     2041 catattttta cgatctactt gcataagctc catttcatct tcttgttgct ctaaaagctc
     2101 ttttactctt tcatctaatt ttctttcatt tagaatatct ttctctaaaa cttctattat
     2161 acatacctta agcttttcta attgatcttt aatttctaca aaagaagaat tagctatatc
     2221 taacatcatt ttatttgcga tataaggaat atgtggtaat tttatacgca tcttaaaaac
     2281 cttttatttg ataatgtttg aaataatagc ttatttttgg taaaagaatg ttaaaaatga
     2341 aaaattttca ttattttaat cacctaatta ctagcattat tatctaaatt tttcaaaagc
     2401 aaagtaagct cgctagcttt ttttggatcc attttagata aaacacctga aattttacgc
     2461 gattccaaag aaagcattat tttgcttgca tcctctgcat ccatttgact taaaacatct
     2521 gcaatggctg catctttcat ttgggaataa atttctttaa ccctaccttg tgttttatca
     2581 ttgattgaat ttaaaatctt ttgttgttct tctacaagcc ttgcgttttc aagctttaat
     2641 tcttcaattt ttgccaaagt tgcattaacc tcagcctctt ttttttctaa attttcaagc
     2701 ctttcttttt gcaaagcttc aaaagaggct ttataagctt ctaaagattg tcttgcttca
     2761 tcaaattctc tagtttgcaa ttcaatttga gcttttctag cttcaaaata ctgctcacaa
     2821 tcttgttcag ctccaaaaac tacacttgaa ataaaaacta acaatataaa ttttttaatc
     2881 atctttttct cctttgaaaa aacgactgat tgcaatttca tctaaaaatt tttcttcagc
     2941 cttggcaagt tctttttgct tttgtttaat ttcctcggct tctaaaacct tcattttttc
     3001 ataatctaaa tgtgcttttt gatataaaaa ctgataatga ttcatttctt ttttagaaag
     3061 ttctactttc tccttagctc ttgccaaagc ctcgcgtcct acttgtgcca tacttaaatt
     3121 cgatcttaac tctgctatag atcctgattt tggcaatacg cctaaacttt cacactcttg
     3181 gcgtgaaagt tcataagctt tttcatgttc aagctgtctt tgtttggctt gattaagatt
     3241 tgattctgct ttatcaagtt gttgttttct tacctttaca acagaattat atttactttt
     3301 cataagatga tagtatcatc tctttcaggg ctagtagaaa tatactttac cttaacccct
     3361 gcaagctctt caagtcttgc tatatatttt ttagcatttt ctggcaataa atcataatct
     3421 tttataccaa aaactttatc ccaaccatcc atttcttcat aaataggttg aacattttct
     3481 aaatcacttg gtatatagtc gatttccata cccttatatt cataagcacg acaaattttt
     3541 atcttttcaa aaccatctaa aacatcaagc ttcatcaaag ataaagcatc aagaccatta
     3601 agccttgctg tatatcttac agcaaccgca tcaaaccatc cacagcgtct tttgcgtccc
     3661 gtgcttacgc caatctcttt tccaatttgc gcaatttttt ctccatcttc gcccttatcc
     3721 tcagtaggaa aagctccatt tcccacacgc gttgcataag cttttacaat acctataata
     3781 tttcccgctt ctttaggatt taacccaagt cctgttaaag cgcctgctga aatagtactt
     3841 gaacttgtaa cataaggata agttccatga tcaatatcaa gcatagagcc ctgagctcct
     3901 tctaaaagta ctcttttatc ttcatctaaa gccttccaaa gcattcttgt agtatctgta
     3961 atataaggag ttaaaatttc attaaaacgt tttaaatcag caagcaattc ttcagcactt
     4021 ggaatttcaa tttcaagcat ttcaaaaaaa gttttattag cttcaaaatc ttttatcaaa
     4081 gcctcgcaaa gtctttgtgg ttctaaaagc tctccaactc tatgtcctgt acgattaatc
     4141 ttatctgcat aagaaggtcc tataccctta cctgttgttc ctatggcatt tttgcctttg
     4201 agcttttctt ttgcaatgtc tattaaagaa tgatgtttta aatttaaatg agctctatcg
     4261 ctgatatata atctaccttt taaattttca aattgagcca tttcagcaat caatacttca
     4321 ggagaaacca caactccatt tccgataata ttaatacatc ttggatgcaa aactccactt
     4381 ggcataagat gaagcgcata tcttacacca tttacccaaa tcgtatgtcc tgcattgtgt
     4441 ccacctgcac ttctgcaaac aaaatcataa ttttcacata atttatcaac taccttacct
     4501 tttccttcat cgccccattg aatgccgaca ataatatctg ctttgctcat aaaaatttcc
     4561 ttgattttac ttaatattgg cgagaagatg agagaatcga actccccaaa gaatagtcaa
     4621 ctatcctttc atctgatttg aagtcagtgg cgatcaccag atacgctaat cttccaaagt
     4681 gataattata gcgattttta atgaaaaaca aaataaattt atcaatattc tttttgactt
     4741 catattaaat ttaagctata atctcactct tttttagcat caagttttga tgattacatt
     4801 tttaggatct ttctttgaat tcttttaaac aaaaatattt aatcaatttt tgggacaatt
     4861 cccgttctat gattgcactt ggaattttaa gtgcagtgta ttttgggatt tttggtggcg
     4921 tttgggctgt tactggagaa atgacacgtt ggggtggcga gtttttagag cttttaggta
     4981 tgaatttaga tggatattct tattaccaaa agcaaaattt aaatggaacc cctttaacaa
     5041 gaactgatgg tattatgctc ataggtatgt ttataggttg tttagtagcc gcacttttag
     5101 ctaacaaagt caaatttcgt ctacctgcta gcaatataag aatttttcaa gcaatagtag
     5161 gtggaattct ttcaggatat ggagcaagac ttgcatttgg atgcaattta gctaattttt
     5221 ttacaggttt accttatttt tctttacaca cttggctttt tactgttttt atggttttag
     5281 gaatttatct aggagtgaaa atttgcaaca cttccttttt taaacctaaa gctaaattag
     5341 aacgtgtaaa taaagaaaac ttgccgttaa acaagcaaag tttgcgtaca aaattatatt
     5401 ttaacttagg catattgctt ttcatagcct ttttagtttg ggtgttttat cttgttttta
     5461 caaatggcaa tatcagcaca caaaacaaac aaagtcttct agctttagca ctgatttttg
     5521 gttttgtttt tggctttgtt atttctagag ggcaaatttg ttttacttct tgctttagag
     5581 atttattttt atttggtaga gataatgcta taaaaggcgc attaatcggt atgattatcg
     5641 cctctttaat cgcttttgct tttatcttgc aaggtcatac tagcaaactc atagaacttt
     5701 ctcctgctgt agctgtggga gcatttttgt ttggttttgg tatagttttt gccggaggtt
     5761 gcgagtgtgg ttggacttat cgtgcctttg aaggacaaag tcattttata atagtaggaa
     5821 ttgcaaatat aataggaact atgattttag ctttaagtta tgacttttta ccaaaagctt
     5881 ttaaagaagg tataaaaatc aatcttttaa ctaaatttgg caatttaaat ggatttttta
     5941 tcaaccttat tttattcatc ttaatgtttg tttttgtagt attttacaaa aaacactttt
     6001 ttaaaaatca acttaaagga taaacagtga aaattactta tagtttaaat ttacaaggtg
     6061 aagcttgtcc ttatcctgct atagcaacac ttgatgtctt acctaagctt aaaagtggag
     6121 aaattttgga agtgctttgc gattgcccac aaagtatcaa ttccatacct caagatgtaa
     6181 aaaaccgtgg ttttaaagtg cttgaaatcg atcaaagtgg acccacacta agatttttaa
     6241 tccaaaagcc ttaaaaaagg cttttattct caaagctctt ttaacatctt ttcataagct
     6301 gctttagttc cagatcttac atttgtaaac aaacttgcaa taataatcac caccgaagct
     6361 actaaaaacc ctggaactat ttcataaaga cctgaatttg caaaattctt ccaaagcacc
     6421 acagtagcag ctcctgttat catacctaag atcgctccta ctcttgtcat cctactccaa
     6481 aataaagaaa aaagcattac agaaccaaaa gaagctccaa atccagccca tgcataagaa
     6541 actatactca aaacacttga gtttttatca gtagaaatca aaaacgctat tacagctacc
     6601 aataaaacac ctaatttacc taaatttaat acaatatgac ttggtgcatc ttctctaaaa
     6661 atctttttat aaaaatcttc cgctatagta gaacttgaaa ccagcaattg tgaacttgcc
     6721 gtactcataa tagccgctaa aatagcactg agtaaaatac ctgctatcca aggattaaat
     6781 aaaagctgcg acatcacgat gaaaatcttt tcaggatctt gcaaacttaa ttcaaattta
     6841 tgcacataag ctatacctaa aatacctatc atacaagcac ttaaaagaca aaccgccatc
     6901 caagcaatac ctataaaagt ggccatagga atatctttag tagaacgaat cgacataaaa
     6961 cgcactaaaa tatgtggttg accaaaataa cccaaacccc aagcaagtgc agatataatg
     7021 cttacaattc ctactccttc gcccatagat aaagcttgtg gctttatttc tcttactata
     7081 ttcatcgctt caccaaaacc acctaaatga taaagcataa ccaaaggtac aataattaaa
     7141 gccatcatca ttaaaagccc ttgtatcata tccgtccaac aaaccgcctt atatccacct
     7201 aaaaaagtat aagcaacaat aataatcgtt ccagtagtta aagcataatc gtatctgata
     7261 ccaaaagtac tttcaaaaag ttttgctccg cttacaagcc ctgatgaaac ataaaaggta
     7321 aaaaatatca aaattaccac cgcacataca atgcgcagta tatgtttatc atcatcaaaa
     7381 cgagtttcaa aataatcagg aatagtcaaa gaatttgcaa tcacactggt ataaattcta
     7441 agtctttttg ccacaaaaat ccaatttaaa ctagctccta tagtaagccc aattgcaata
     7501 taagaatcta taaaaccact tacatataaa gctcctggta aacccattaa aagccaacca
     7561 ctcatatcag aagcccctgc gctaagtgca gatatcacag gccccatagt acgcccacct
     7621 agaaaataat cctctgaatt tttattttgc ttataaaaat aaaaacctat ataaagcatt
     7681 aataaggcat acactacaaa catcactgct attggggtat taatttgaac cacttccatc
     7741 aatctctcct tgatcattaa gatattgctc taatgcctaa atttccataa cgatgaaaag
     7801 atatacttaa agctttttca ttaaaataat ttaaaagttc aaaacgacca tttaataatg
     7861 gcttttctct tataatgatt ttagcaagct ttgcagcctc tttataaatc tcatcattta
     7921 catctggctt tgctaaataa cgcactcttt catattcttt aatactcttg ataaaatttt
     7981 ctttattttc ttttaaaaac aatacttttg ctcctatgct ttgaacaatt cgttctatca
     8041 tactaacatc ttgttcatca taactgatac ttagatcaat atttgcaata tttgcaccta
     8101 aaaccacacc taaaacatct tttaagcttt catttccaca aagtcttaaa accatattct
     8161 ttattttagt ataagaaaaa agattatctt ctccacgaat attgacataa tcttttgaaa
     8221 cactaaactc gtttttataa tgataagcat aagattgaga cattttaatt aaattgttta
     8281 taaaatcttg tgcttctttt aaatctattt gtgctaattt ttttgaaaat ttatcttcaa
     8341 ttaaatgatc atcaaaatct tcttgcttaa tctctaaaaa ttgagtgata taattataaa
     8401 ttcccacttt tctacccaaa cctatagctg attttttaat cccaccaaaa ggttgacgca
     8461 gcactatagc ccctgtggtt ggtttattga tataaatatt tcctgcttct atgtgagtgt
     8521 gaaaatactc ccattctctt tcatctaagc tttcaaaacc tgcagttaaa ccataacctg
     8581 tggaatttac tatatcaata gcttctttta agtctttagc cttcatcaca cttaaaatcg
     8641 gtacaaaaag ttcattcata tgagtaaaat cacccttttt agtgccatat tttatgcctg
     8701 gagtcatcaa ataaggatta tcctctaaaa acttaggttt taatgcccat tcttcataag
     8761 gttgtaattc atctaaggcc ttttgaactt tagaacttgg cttatcagct aaagtaccta
     8821 atttattttt aaattcaaaa ggattgccca ctgccataga actcgcagca tccactaaag
     8881 tctttttaaa ttcttcatca tgataaacct cttcttctaa gactagcaaa gaagtagctg
     8941 aacatttttg accgctattg ctaaaagcag aatgaatgat atttttaatc gcactatcac
     9001 gatcagcaaa tttagaaatt atagtcgcat tctttccgcc agtttcagca cttaaaagca
     9061 aggttggatt agcttttaac atagcataag cagtatcctc tcctcctgta agaattgaaa
     9121 atttaatcgc ttcatcaata agtaaatatt tagaaatatc acttcctttt gaaggtaaga
     9181 aaatcaaagc atcttttgga atacccgaat cccaaaaaca cttacaaagc atataacctg
     9241 ttagagttga aagtgaagaa ggtttgtaaa tcaccacatt acctgcggct agtggtgcag
     9301 ctatagtacc tactgaaatt cctataggaa aattccaagg agctatggta acccctatac
     9361 ctttaggtgt gaatgtaact tttggatttt gttttttaag ctcttctaaa gagtgcggat
     9421 aaaactctat aaaatcaata gcctcgctta cttcaggatc gatctctaaa aaggttttgc
     9481 ccacttctaa agctgccaaa cctatcaaat cccctcttct ttctctcatc agttttgcac
     9541 ttttggctaa aatttgataa atttcatcat gacttttttg tgtaaatttg gaatttttag
     9601 ctacttctaa agcttgtttg atttcttttt ctcctgctaa ataagccttt cctataactc
     9661 tatctttgat cttatcttta acttctaaaa catttaaatt ttctgcttta aaatcaagtt
     9721 cgcctataac aggataaaca tcataatctt ttaaattttc atatttagtt ttaatttctt
     9781 tagcccacgc tctattttgt actaaaataa aatccgtatc gctttcattg ctaaattttt
     9841 tactttcata agaacttatg atatttgatt ctttatttct atcttgctta cgatgtgtag
     9901 tattatcaag agtttttatg ccttctaaag attttaaaaa aagttctttt tggatattcc
     9961 agttcttatc tcctacttta agattgaaaa aataacgcat aaaattatct tcacttgtat
    10021 tttcatcaag gcgtcttaca agataagcaa tggcattgtt aaaatgtgct tcatcgcaaa
    10081 ctggggcata aaggattaga tcatgcattt tagataattc ataagaacat tgcaaactca
    10141 taccttcaag catttcaaaa gtaaaagaat ccaaagcacc cacttcactt atgcgtgtat
    10201 aagcataagc aatctcaaag atattatgac ttgcaattcc tatgttgatg tatttataat
    10261 tatctccttc aagaataaaa tcaagcattt tattataatt actatcagta tctatttttt
    10321 tgtaaaaagt aggaagctcc caaccccttt gagacgcaat ggtttcttca ctttccatat
    10381 tagcaccctt aacaaaacgg atcttaatag gcttcatacc ttttaaaacc ctctcttttg
    10441 aaaaagcaaa aagtttttta agatacttat aagaatcagg aatataagct tgcaaaacaa
    10501 tccctgcttt aatatcaaat ttagccacac tttccataaa agctgcaacg gtgagctcta
    10561 aatccctaaa ttcttccata tcaagattga taaatttaga tacaccttgt tttttctctt
    10621 cttctaaggc taaagcataa agataatcta gtctttttac gacctcttct ttagaataat
    10681 taaaatctat aatattaatt tgtgaaaaaa tagtagtaat ttttatggaa atataagtga
    10741 tatagcttga ttttaaggct tcttcgtatt tttgcatacg atatttactc tcagcttcac
    10801 ctaaaacctc ttcgccgatt aaattcacat ttaaggtaat tttatcttgc tcttttcttt
    10861 tcttaatatg tggttctaaa acactaggat ttgcatctag aaccatagct ttagtatctt
    10921 ctcttaaatg tttgacaaaa aaaggtacac ttaaattagg agcaaatttg ccaaaattta
    10981 aaaagctaaa aagtaggaat ttttcaaaag tgctaaaaaa atccgctatg ccatatttac
    11041 tcaaagtata ttctataagc tcaaaacttg catttttatc tttacatcta aaagaacgat
    11101 ctaaaagctc tataagcata actttatttt tgggattatt aagaagtttt tgcattttag
    11161 catgaaattc tttttcagaa tttgaaatat tggcttctat ttgtccttgt aattcttcag
    11221 ctaaggctaa agctttttgt atcatttcgt atctcctaag
//
LOCUS       DAQSLY010000046        11183 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.046, whole genome shotgun sequence.
ACCESSION   DAQSLY010000046 DAQSLY010000000
VERSION     DAQSLY010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.046"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            1..382
                     /locus_tag="R2H98_000972"
                     /pseudo
     CDS             1..382
                     /locus_tag="R2H98_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(394..2070)
                     /gene="ilvD"
                     /locus_tag="R2H98_000973"
     CDS             complement(394..2070)
                     /gene="ilvD"
                     /locus_tag="R2H98_000973"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEE9023865.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNNYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICVPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            2230..2877
                     /locus_tag="R2H98_000974"
     CDS             2230..2877
                     /locus_tag="R2H98_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEE9023866.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVSAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            2942..3181
                     /locus_tag="R2H98_000975"
     CDS             2942..3181
                     /locus_tag="R2H98_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEE9023867.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            3214..3789
                     /locus_tag="R2H98_000976"
     CDS             3214..3789
                     /locus_tag="R2H98_000976"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEE9023868.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(3790..5235)
                     /locus_tag="R2H98_000977"
     CDS             complement(3790..5235)
                     /locus_tag="R2H98_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEE9023869.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(5245..9735)
                     /gene="gltB"
                     /locus_tag="R2H98_000978"
     CDS             complement(5245..9735)
                     /gene="gltB"
                     /locus_tag="R2H98_000978"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEE9023870.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHIAYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(9869..11176)
                     /locus_tag="R2H98_000979"
     CDS             complement(9869..11176)
                     /locus_tag="R2H98_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEE9023871.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSVSLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNTDKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         3670 a         2186 c         1612 g         3715 t
ORIGIN      
        1 caaaagcgct atactttagc cttttttata ggtatattag cgggtatttt cggagctatt
       61 gttaaatggg gttgggaagt accttttcct ccaagaaatc ccaatgtttt ttgaccagca
      121 gatgctttag aacgtgttac tccacctaaa atttttctag aacaactagg cttacctact
      181 gaaaggtgca gtttttggat tttttgttta tctttttgcc catgttattg taatgccttt
      241 aattgcagaa gttccaccac tttctgaaat tccttttgat gaacacctgt ctgaaatttt
      301 tggccatatt gtttggctgt ggggcatgga aatagttcgt agagatataa gaaatcgtat
      361 aaccaaagaa atagaagaat gaaaggaaac ctttcattcc atatctaaaa ccgcaccttt
      421 actagcattg ctaacaagtt tttgatacat tctaagccat cttgaagaca cctctttttg
      481 aggcaatgca aattcttttt tacgtttagc aatttcttct tcacttacat ttgcatggat
      541 agtataagca tctacatcaa tttctatttc atctccatct tttaaaagtc ctataagacc
      601 accttcagct gcttcagggg aaatatgacc aacgcttaaa ccccttgtag ccccgctaaa
      661 acgaccatcg gtgattaaag ctacatcagc acctaaaccc atacccatta aaagtgaagt
      721 aggacttaac atttcttgca taccaggacc cccttttgga ccttcatagc gtattacaca
      781 aacatttcct ttttgcacct tgcctttgat aatgcctttt atagcttcat cttgagagtt
      841 aaaacaaaca gctttgcctt taaattttct ttctccgatt attcctgcgg tttttataac
      901 gcaaccttgc tcggctaaat ttccaaacaa aatggcaagc ccacctactt ttgagtaagc
      961 attatctact ttacgaatga tattttcatc tttgattttg gcatttttta agcgttcttt
     1021 gagactttct cctgtaatgg tcagtgcatc aagttctaaa atatgtcctt gtctgcttga
     1081 aatttcagcc ataactgcac tcacaccgcc tgctttgtgg atatcatcca tataaacact
     1141 atttagcgac ggggctattt ttgctatgtg tgcaactttg cttgagatga aatttaaatc
     1201 tttaatatct agtgccaccc ctgcttcacg cgaaatggca agcatgtgta aaacagtatt
     1261 gctacttcca cccattgcca tatctactac catagcatta cgcacggctt tttgagtgat
     1321 gatattgcga attttaaaac gctcatctaa ggcgatttca caaatacgac gcgctgcttt
     1381 tcttaaaagc tcttctcttt ctttgcttaa agctaagatg gttccattac cttctagtgc
     1441 tatacccata gcttcgcata aggtattcat agaatttgct gtaaacattc ccgagcaaga
     1501 tccaccactt ggacaggctg aacattctat atctttaaat tcttcttcgc taattttttt
     1561 ggcttcataa gcccctacag cttcaaaaac agagctaaga ctaatctttt ctcctttttt
     1621 agttacccct gaagccatag gcccaccact tacaaaaatg gttggaacat ttactcttaa
     1681 agctcccatt aacataccag gagtgatttt atcgcagttt ggaacacaga ttaaagcatc
     1741 aagttgatga gcattcatca ctgtttcaat ggaatttgcg atgatttcac gacttggtaa
     1801 agaataaagc ataccttcat gtcccatagc tataccatca tctacaccta tggtattaaa
     1861 ctcaaaaggc acacaaccat ttttgcgtat ctcatcttta atgattttag cataattatt
     1921 taaaaaataa tgtcctggga ttatatctat atagctattt gctacaccta taaaaggttt
     1981 gtcaaaatct tcatctttca aaccacaagc acgaagtaaa gaacgattag gtgcttttaa
     2041 atgtcctttt tttatcgcat cgcttctcat tgtaactcct gataataatt ttttaaaatt
     2101 atatttagca aagcttaatt tttgtgaaat ttattttgat atacattttc ataaatgata
     2161 aaaattatta attgacaaaa atattttttt ataatacaat gctttttgat aatcaaaaaa
     2221 ggagtcaaaa tgagacaata tgaaacctat aaatgccaaa aatgtggtaa tgaagtagaa
     2281 gttcaaaatg taggtggagg taagcttagt tgttgcggtg aagaaatgaa atgtatcact
     2341 acagatttaa ctgcagtaaa tttgatgaaa gcttttgcgg gcgaatctat ggcgagaaac
     2401 aaatacgatt tatttgctga tgtagctgaa gaagaaggtt ggcatgcggt tgctagacat
     2461 tttagagaag cagctgaaaa tgaaaaatgg catgcaagag cagaatttaa agcttatcat
     2521 gaaatcgttg atggaaaacc tttagaagta actacaaaaa acctagtaag tgctgcagaa
     2581 ggtgaaaact atgagcacac aactatgtat ccaaattttg caaaaattgc tgaagatgaa
     2641 ggtaaaaagg ctatagcaag attatttaca gctattggta aagtagaaat cgaacacgaa
     2701 agagaatatc tagcgcttaa aaaaatgctc gaagaagaag aattttttaa tagtgaagta
     2761 gaagaattat gggtttgtga agtatgcgga catatacatc gtggcaaaaa agctccagca
     2821 gcctgtcctt tatgtaaagc accaaaagag tattttaaac gcgaattttt gggttaagtt
     2881 aagaaattct tatccttttt aagataatat tataattatt ttttaataaa aggataagaa
     2941 aatgaaaaaa ttactatttt tattttttgc tttaacggct tttctctttg gtgctgtaaa
     3001 tatcaacact gcaacactaa aagaattaaa aagtttaaat ggtattggcg aagctaaggc
     3061 taaagcgatt ttagaatacc gcaaagaagc aaattttaca agtattgatg atcttaaaaa
     3121 agttaaaggc ataggtgata agctttttga aaaaatcaaa aatgatatca caatagaata
     3181 aaagggcatt tttgcccttc tttttagaaa aatttgaaaa ctttatttga cacaaaagaa
     3241 cttttaaacg aatttgatat aaatttaatc ggtattgatg aagcaggacg cggtgcttta
     3301 gcaggtccta tgatgatggc agcttgcaaa ctgaacaaac aacttgatgg gttgtgtgat
     3361 tctaaaaaac taagcgaaaa aaaacgcgaa gaactttatg aaatcatcat caaaaattca
     3421 aactatctca tacttgcttt ttcttcagaa caaatcgacg cactaggctt aagcacttgt
     3481 ttaaaaaaag gcttaaaact tataaaaaag cattttaaaa cagaaaataa cttcttatat
     3541 gatggaaaca ccaacctagg tataaacggg ataaaaacac aaatcaaagc cgacactagc
     3601 attttgcaag taagtgcagc tagcatactt gcaaaagtta gtaaagatag ggtgatgaat
     3661 ttcttagcta aagactttcc ttgttatgaa tttgaaaaaa acaaagccta tggcacaaaa
     3721 gctcataaag aatttatagc taaatttgga atttgcaaac tccaccgaaa aagttttaaa
     3781 cttttatgat tattttgcta aattttgatg caaactcaaa gcacattcta taccatcttt
     3841 tatagcccaa acaactaaag attgtccttt tctagcatct ccacaagcaa agattttttt
     3901 atgagtggtt tggaaatttt ctgtgcttat gttgtttttc tcatctaatt tcactccaaa
     3961 atttttagag atagcttctt cgcacccgct aaaacccata gctaaaagca ctaaatccgc
     4021 tttataagtt tttttagaat ttgaaatttc gacatttata gctttgcctt ctttaaactc
     4081 gcgttttaaa tcatttgctt caacaccttc tacatgagtt tttcctaaaa atttctttgt
     4141 cattttttga tattccctag gatctttgcc atatacagca atggcttctt ctaaaccata
     4201 atcagtagta aaaatgtcag cttttaaagg ccaaggattg ttttggcttc tttgcaaagg
     4261 tctttttgga cttctttcaa aacgcactat agatttagcc ccttgtcttg tcgctacagc
     4321 gatacaatcc acacttgtat ccccgcttcc tataaccaag acatttttac ctttggccat
     4381 atctgcaccc ttgcctgttt ttaacaaagt tttggtattt tgcgttaaaa aatcaagggc
     4441 aaattcaacc ccttttagct ttctaccttc tatatcaaga tctataggct tacttgctcc
     4501 tgtacaaagc accaaagcat caaattcttt tagaagtttt gaaaccttat ctttgctgtc
     4561 tatattttca ttcactttaa attcaatccc acttttttta agcaaatcca cccgtctttg
     4621 aactatactt ttatcaagct tcatatcagg gatgccatac atcaaaagtc cgcctatttt
     4681 atcgcttctt tcaaaaacac ttactttata acctagtgaa tttaaagtat tggcacaagc
     4741 aagcccagca ggcccacttc ctatgacagc gatttttttg ccattgtatt gcttaggttt
     4801 atttactctt actaaatttt ccttaaaagc attttctata atggataatt cattattttt
     4861 tatgctcaca ctaacaccat ttatcgcaca cacacaagaa tcctcacaag gagcagggca
     4921 aacacgaccg gtaaattcag gaaaaggatt ggtaagatca agtctttcat aagcttcttt
     4981 ccataaagaa cgataaacaa gatcgttcca ttcaggaatg agattgttta aaggacagcc
     5041 cacatctttt ccttcgctca tcacacccgt atgacaaaaa gctaccccac aatccataca
     5101 tcgtccacct tgaatttctt gttctttttt atccaaaggt atagtaaatt ctttgaaatt
     5161 taaaaccctt tccttaggag caattttttt aaaatccatt cttttaaagt ctaaaaaacc
     5221 tcttgcattt cccattttta ctccttattt ttgtgtgatt ttcaaaaatg ctgctaaatt
     5281 tggatctttt tcatttttac aaagatcaag catttttaac atcttttcat aatctcttgg
     5341 catgacttta aaaaagtctt ttttatcgaa tttttctaag atatctttag cctttttaga
     5401 atctgtataa gcgatatgtt tttctatcac ggcttttaat tctttttcat ccttggcatt
     5461 aagatcttta atatccacaa gctcggtatt tacatgagct tcattgtgtc ttccaaagat
     5521 ataaacaacg cccccactca taccagcagc gaaattcgca cccacatctc caagaactac
     5581 aacttgtcca cctgtcatat attcacaacc atgcacacct gttcctaaaa ccacagccaa
     5641 agcccctgaa tttcttacac aaaatctttc ccctgctata ccatctaaat acacttcacc
     5701 ttttgtagct ccgtataaac aagcatttcc tgcgatgata ttttcttcag gtgaaaaagt
     5761 ggcttcattt gaaatttttg ctatgatttt accaccactt aaacccttgc ctaaataatc
     5821 attgctatcg cctataatct caagtttaat accctttaac aaaaacgctc caaaactatt
     5881 gcctgcattg cctatagctt tgatatggat actatcttca tctaaagcat cttttccata
     5941 agtttttaaa atttcacttg aaagcatagt tgcaaaagta cgactttgat ttcctacttc
     6001 taaagaaagt ttgataggct cttttttctc cacagcattt ttacaaagtg gtagtaaaat
     6061 tctataatca atcgtttttt caagtttatt gtctttataa tctttaaaat gcacagcggt
     6121 tctattataa gtaggcaagg attttaaaat tttatctaaa tttagctttc ctgctttacc
     6181 ttgcacactt ttttggcgga gtttatccac gcgacctatc atatcatcta ggcgttcaaa
     6241 accaagcctt gccatgtatt ctctaagctc ctcagctata aaatacatga aattaatcac
     6301 atcatctact ttgcctttga aacgatctct aagttctgta tcttgagtgg ctataccaaa
     6361 aggacaagta tttagatgac aaactctcat cattgtacaa cctaaaacaa tcaaaggcgc
     6421 ggttgcaaaa ccaaattctt cagctcctaa aagtgctgct atggctaaat cacgcccatt
     6481 cataagcttt ccatcagttt ctaatcttac cctatctcta agcttattta agatcaaagt
     6541 ttgatgcgtt tcagctaagc ctaactccca aggaattcca gcatgcggta tagaagttct
     6601 aggacttgca cccgtacctc catcataacc tgaaacaagg attaaattcg cgcctgcctt
     6661 agccacacct gcagcaaccg ttcctatgcc attttcgctt acaagtttta ctgaaatttt
     6721 agcgtctttg ttcgcatgtt ttaaatcata aatgagttga gccaaatcct caatagaata
     6781 aatatcatga tgaggaggtg gggaaataag cgtcacacct gcagtagaat gtctagcctt
     6841 agctatccaa ggatagactt taaagcccat taattgtccg ccctcacctg gttttgcacc
     6901 ttgagcgact ttgatttgaa tttcttttgc atgacttaag tagtttaaat ccacgccaaa
     6961 acgcccactt gctacttgct taatggctga gtttttatcc acaccctctt tgatttcata
     7021 gcgttcttca tcctcaccac cttcacctga atttgattta gcacctattt tattcatagc
     7081 ctgtgctaaa cactcgtgtg cttctttaga aatagaacca taactcatcg ctcctgttct
     7141 aaagcgttta actatacttt ctacactttc aaccttatct atactgatag cttcactaaa
     7201 atcaaattcc atcaaagaac gcaaattaac ttgtttttca tctactaaag ccgagtattt
     7261 tttaaagctt ttatagtctt tgttgcgaca ggcttgctga agattaaaaa tcacaagcgg
     7321 atcgattaaa tgttcttctt tagcacttct aaaaccatga attcctttag aatctaaagc
     7381 cttatgtgta tcgttaaaag catgtttgtg taaagcaatg agttcttttt caaaatcttc
     7441 taaatccata ccttcaatgc gtgaagttgt agaagtgaag tatttatcaa tcaccttaga
     7501 gcttaagccc agacattcaa aaagtgcaga gccattataa ctttgcaagg tagaaacccc
     7561 cattttagaa gcaattttga ctataccact tgaacttgcc ttgatgaaat tttctaccgc
     7621 cttttcataa cttaaattta aatctttatt ggcaatgagt ttttgtatac tctcataaac
     7681 caaataagga ttaataacag tcgcaccata acctaaaaga catgcaaaat gatgaatttc
     7741 tctaggttca ccactttcga tgataagact tgtatgtgtt cttaaatttt ttcttactag
     7801 atgattatgc actccagaaa cagcaagcaa agcagggata taagcgtttt tttcatccac
     7861 tcctttatcg cttaaaatga taatagaaac acctttttta acctcatctt ctatcttaac
     7921 gcaaagttca tctaaagcct tttctaaagt ttttttagaa taatcataaa gtatagaaaa
     7981 ttctttaact tgaaatttat ttaaagcctt aacttcaaaa agttcttcat tgcttatcac
     8041 aggcaaggct atttttacgc gttttgcatt gttttcatcg ggttttaata aattgccttc
     8101 gcttcctaga taaatccttg tagaagtaac aatctcttct cttatggcat caaggggagg
     8161 attagttact tgtgcaaaaa gttgtttaaa ataattatac aaaggttgat aagttttaga
     8221 aagtatagcc aaaggagtat ctacacccat agctgctata gcttctttac cattttgagc
     8281 catagcagcc acactcattt taagctcatc ataactccaa ccaaaagctt tttggagttt
     8341 taaaacctca tcttctttta aaaactgatg tttataaact ccgctttttt gtttttcaag
     8401 ttcaactaaa tttttaagcc attttttata aggcttagca ttagcataat gctctttgat
     8461 ttcattatca gctataaccc tacctcttgc tgtatcaaca agtaaaagtt ttccaggttc
     8521 taagcgtttt ttggctttga tatttttttc atcaagtttt aaagcccctg tttcacttga
     8581 aagtatgagc atatcatctt ttgtaagata ataccttgaa ggacgaaaac catttctatc
     8641 caaactcgcc cccataatca ctccatcagt aaaaactata gcagcaggcc catcccaagg
     8701 ctccatcaat aaagaatgat attcataaaa agcacgcttt ttgctttcca tattttcatt
     8761 tttatgccaa ggttctggca ccatcatcat aaaagcttct tctaaagtac gaccatttag
     8821 agctaaaaat tctaaagtat tatcaaacat tgcagaatca ctgctaggct tagctatgat
     8881 aggaaaaatt tcatctaaat tttcaaaata ctcactttgc atcaagcctt ctctagctct
     8941 tatgctatca acatttccgc gtatggtatt aatctctcca ttatgcacca tataacggtt
     9001 tggatgggct ctttcccaac ttgggaaggt attagtcgaa aagcgagaat gcaccaaagc
     9061 gatggctgat ttcatattga catctttaaa atcaagataa aaatcgctca attgagttga
     9121 aagaagcatt cctttataaa ctatggtgcg tgaagaaaaa cttgaaaaat aaaattttgg
     9181 cacattaata gctctttttt ctataagtcg acgcgtacta taaagcactc tttcaaactc
     9241 aagtcctgca cttattttac ttggtttttt cacaaaggct tgtaaaaaat aaggcatagc
     9301 ttttaaagca cttgcaccta tatcgctagg attaaaaggc acttctctaa aacctaaaaa
     9361 ttcaagtttt ttatccttta aaccttgtaa aaatatttct tttgcttctt cttttgcatc
     9421 agtattgggt gataaaaaca tctgtgctac agcataatca ccctttttag gaagttcaaa
     9481 acccaattct tgagttttaa aaaaatcatg tggaatttgg attaaaatcc ccgccccatc
     9541 acctgaattt tcttcagctc ctgcaccacc tcggtgttca agattcatca aaatttctaa
     9601 agcatcacaa ataaccttat aagaagcaat accgcgtata ttagcaactg cagcgatacc
     9661 acaggcatcg tgttcgttct ttgggtggta taaacctatg ctttgattat tttctaggat
     9721 attttctaaa tccattttgc tctccttata agactgattt aaattttgtt agctttataa
     9781 ggattatagc atacattttt ttaaaatcga tataattttt atcttaaaaa taaataaatt
     9841 aaaaaatatt ttgatagatt tgcaaaaatt ataaaaacat ggcgataata ctacccaaaa
     9901 tcaataatgg accattataa aaaataaaag ttggtatgca agtatcttta atgtgatcgt
     9961 gttgtttatc agtatttaat cctacagtag ttcccatggt tgtttcactg gctggacttc
    10021 ctgcatctcc taaagctcct gctactccta agataaatat aataagtgct gtactaaaac
    10081 caagttccaa acaaatagga caaaaaagcg tagctatgat aggtatagtt ccaaaagaag
    10141 tacctatacc catagtgatg ataagtccta ttaaaagcat gaaaaatact gctaaaaatt
    10201 tactttgctc catccaagga acgactgaat ttacaagatc tactactgat ccactttctt
    10261 ttaaaacttc tccatatcct gcagcaacaa ggataacaaa agctataaaa cccatcattt
    10321 taagcccatc atcaaaaact tcattgactt ttgaaaattc aactccaccc aaaataacca
    10381 ttaaaacaaa acccaaaagc cctgataaag gtaaattcat agtcaaaatt tgcaaaatta
    10441 aagttaaaac aagcccagct aaaacacccc attctttacg cgtcatttca agattttcta
    10501 aatccacttt agcaatttct acttcttgat actctcttga cttacgataa aacacaaaaa
    10561 gcgctagaaa aagtcctgct atcatacaaa tagcagcgaa atacatagta tttgtaacat
    10621 catttaaaga tacacttaca ttatttgcat ttaaattatc ttttaaaaga tcttgaaaag
    10681 taagtccaaa gcctactggc aaaaccatat aaggcgtagt aagtccaaaa gttaaagcac
    10741 aagcaaccgc tctacgatcg attttaagtt tattaaaaag acttaaaaga ggtggaatca
    10801 acaaaggtat aaaagccaca tgaataggaa ttaaattttg agaaaaacaa gaaatcaaag
    10861 ctatagacaa aagcaataaa tattttttat gagatataaa atgacttact atcttaatca
    10921 aatatgcagt taaatttgtc tttgaaatcg ctgcggcaat ggcccctaaa agtatatagc
    10981 taagagctgt ttttaaattt tctttcattc cgcttataag tatattcata gtatctacga
    11041 gttcaagatg agaaaataca cctgcaacaa gagctgagat caaaagactc aaaagtacat
    11101 taaaacgaaa caaacaaagt aaagtcatca aaacaacact gataatgata ggattagtaa
    11161 gtaaagtcaa aattattcct taa
//
LOCUS       DAQSLY010000047        11030 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.047, whole genome shotgun sequence.
ACCESSION   DAQSLY010000047 DAQSLY010000000
VERSION     DAQSLY010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.047"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            29..1054
                     /locus_tag="R2H98_000980"
     CDS             29..1054
                     /locus_tag="R2H98_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEE9023872.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1148..2485
                     /locus_tag="R2H98_000981"
     CDS             1148..2485
                     /locus_tag="R2H98_000981"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEE9023873.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALND"
     gene            2478..2948
                     /locus_tag="R2H98_000982"
     CDS             2478..2948
                     /locus_tag="R2H98_000982"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEE9023874.1"
                     /translation="MTKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            2932..3384
                     /gene="hemJ"
                     /locus_tag="R2H98_000983"
     CDS             2932..3384
                     /gene="hemJ"
                     /locus_tag="R2H98_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEE9023875.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(3381..4727)
                     /locus_tag="R2H98_000984"
     CDS             complement(3381..4727)
                     /locus_tag="R2H98_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEE9023876.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            4855..5106
                     /locus_tag="R2H98_000985"
     CDS             4855..5106
                     /locus_tag="R2H98_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023877.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINDTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKVYEITDTDLDKDF"
     gene            complement(5129..6607)
                     /gene="cmeC"
                     /locus_tag="R2H98_000986"
     CDS             complement(5129..6607)
                     /gene="cmeC"
                     /locus_tag="R2H98_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEE9023878.1"
                     /translation="MNKIISISTIASFTLLISACSLSPNLNTPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKETYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNT
                     KYSYANSIVDVIKAFGGGFEQNEDTSKNIKEESKNLDISFRE"
     gene            complement(6600..9722)
                     /gene="cmeB"
                     /locus_tag="R2H98_000987"
     CDS             complement(6600..9722)
                     /gene="cmeB"
                     /locus_tag="R2H98_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEE9023879.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGVIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPNEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            complement(9722..10825)
                     /gene="cmeA"
                     /locus_tag="R2H98_000988"
     CDS             complement(9722..10825)
                     /gene="cmeA"
                     /locus_tag="R2H98_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEE9023880.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEVPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            complement(10920..>11030)
                     /locus_tag="R2H98_000989"
     CDS             complement(10920..>11030)
                     /locus_tag="R2H98_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEE9023881.1"
                     /translation="HLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
BASE COUNT         3640 a         1657 c         1788 g         3945 t
ORIGIN      
        1 ttaatttatc tttaatagga gtttataaat gaaagtaaaa tcattgctaa tcgcatcctt
       61 agttgctttt tcaagcttaa atgctgcaag tcttatagat gaagctaaaa attcaggtct
      121 tgttgcctta ccaaaagatc aaaaaggcgt tgatgaaatt ttaaaacaaa atggagtaaa
      181 ggctagtgaa tttactcttg aaaaagcaga gcttggcaaa aagctctatt ttgaaccacg
      241 tctttcaaaa agtggtatca tttcttgtaa tacctgtcat aatgtaggac ttggtggaac
      301 agatggaatc agtactgcaa taggtcataa atggacagca aatcctcatc atttaaattc
      361 accaacagtt tataatgcag ttttaaataa tactcaattt tgggatggtc gtgcaggaac
      421 attagccgat caagctaaag gtccaatcca agctgatcct gaaatggcaa ctcctgctaa
      481 acttgcagta gaaaaaattt catctttgcc tgaatatgtg agtgagttta aaaaaatcta
      541 tggtaaaagc ggtgtaaatt ttgacaatat tgctgatgca attgcaaatt ttgaaagaac
      601 tttgatcact ccatctcgtt ttgataaatt tttagaaggc gatgaaaaag ctttaacaaa
      661 agaagaacaa aaaggcttaa agctttttat agataaaggt tgtgtagctt gtcataatgg
      721 tgtgaattta ggtggcaata tgcaagcgtt tgaagttgct ggtaaatata aatttgcaaa
      781 tttaggtgat tttaaaggtg atgcaaatgg catggtaaaa actccaactt taagaaatgt
      841 tgctgaaact gctccatatt ttcataatgg tgcgatttgg aatttaaaag atgctattaa
      901 ggaaatgggt agtgtgcaac ttggcattaa aatttctgat aaagaagcaa aaagtattga
      961 aactttctta aaatctttaa caggaacaaa accagcaatt gtttatccac aacttcctat
     1021 ttctactgaa aaaactccta aacctgaact ataaggttcc aaacaagctc taattttaga
     1081 gcttgtttaa atttctttat cttagctttg ttataattgt ctttaaattt tgctagaaag
     1141 gtttgcaatg aaactttttg gaactgatgg agttcgtgga aaagcgggtg aatttttaga
     1201 tagttttttg gctatgcgtt tagcaatggc tgcgggtatt tattttaaag ataaaagtat
     1261 tactaataat atcttagtag gaaaagatac aagaagaagc ggctatatga tagaaaatgc
     1321 tattgtttca gggcttactt ctataggata taatgttata caaattggtc ctatgccaac
     1381 tcctgcgatt gcattcttaa ctgaagatat gcgttgtgat gcagggatta tgatttcagc
     1441 ttctcacaat ccttattatg ataatggtat taaatttttt gatgctcatg gaaacaaact
     1501 cagtgaagat atagagaaaa aaatagaaga aatttatttt gatgataagc ttatacaagc
     1561 ctctaaggta gatatggaga aaattggtca agcgaaaaga attgatgatg ttataggaag
     1621 gtatattgtt tctattaaaa attcttttcc aaaagatctt actttaaagt ctttgcgtgt
     1681 ggttttagat gtggctcatg gggcagctta taaggtagca cctactgttt ttaaggaatt
     1741 aggtgctgaa gttatagtaa tgagcgataa acctaatgga cttaatatca atgaaaattg
     1801 tggagcttta catcctgcaa atttagctgc tgaggtaaag cgtttgcgtg cagatgtggg
     1861 ctttgctttt gatggtgatg cagatcgttt ggtggttgta gatgaaaaag gcgaagtggc
     1921 taatggagat agtttattag gggttttagc actttatctt aaagaacaag gtaaattaca
     1981 atcaagtgtt gtagccacta taatgagtaa tggtgcttta aaagaatttt taaataaaca
     2041 tggtatagaa cttgatactt gtaatgtggg cgataaatat gtgcttgaaa aattaaaagc
     2101 caatggtgga aattttggtg gagagcaaag tgggcatatt atttttagtg attatgcaaa
     2161 aactggagat ggtttgatag ctgctttgca atttagtgct ttaatgcttt ctaagaaaaa
     2221 atctgcaagc tctattttgg gtcaagtcaa accttatcct cagcttttaa ccaatcttaa
     2281 aattgcagaa aaaaaagatt tagataaaat taaaggttta aaagaattaa aaaaagattt
     2341 agaaaataaa aatattaata ccttatttcg ctattctgga acagaaaatt tgataagact
     2401 tttactagaa gccagagata ttaagctctt agaaaaagaa atgaaaaatg ttgtggagtt
     2461 ttttaagaaa gctttaaatg actaaaactt ttaaatttat tttttatttt tggggtgcct
     2521 ttgttttggt ttttgccctt gatcaatggg taaaatcctt aactttagca ggatttagat
     2581 ggcagagtga atacctagat ttaacttatg ctctaaatac aggcgtagct ttttcaatgt
     2641 tgagtttttt agaacataat ttaaaatatt tacatcttgc tttaattggc gtgcttttta
     2701 tttatctttt ttggcaaaga acacttttaa aaactcatag catagctttt ggaatgatgc
     2761 ttggtgccgg cgtttcaaat ttattggatc gttttataca tggaggtgta gtggatatgt
     2821 ttttttggca taaatggttt aattttgcta tttttaatgt tgcagatgtc atgataaata
     2881 taagtgtggc tttgatttta atacaagaaa tatttaaaaa aaggaaaaaa gatgacagaa
     2941 tggattaatg attattattt ttggattaaa tgggtgcatt atttggcatt tgtttcttgg
     3001 atggcgggtc ttttttattt acctcgtctt tttgtgtatc atgctgaaca taaagacaat
     3061 aaaggttttg tcgaggttgt aaaaattcaa gaaagaaagc tttattatta tatacaaact
     3121 cctgccatga ttgtgacttt aatcacagga agtttaatgt tgcatgctca taaggaagtt
     3181 ttaatggtag gtgcgggttt tatgcatgtt aaacttacct gtgttacact tttgattatt
     3241 tttcatatac ataattatta ttgtttaaaa gctttagcaa atgatacttc tactaaaagt
     3301 ggaaaatatt ttagaattta taatgaattt ccaactataa tgtttattat catcgcttta
     3361 atgatggttg ttcgtccctt ttagtttgtc tccgctttaa attccatact agcggagtta
     3421 agcggatcaa tattttcttt catgatatcg atataatctt tatttttaag acgcttatca
     3481 tctctaaata ctgcgcgcac aagatccatt cctgtgtaaa aatctttcat taaaaccaca
     3541 aaaagatatt gaccaaattc agttgcgatt aaagcatttt gatcttttat gatggcacca
     3601 cttgttttaa gtcctaaaag ttctatgaaa agttcttttt cgagattgca atttagagtt
     3661 ttattaaatt tatcaatttc tattttccct gaaaaaattt cagttaaaaa gacatatttg
     3721 ataatttctt ttttatcaaa acaagctttg gctatattag cattttgttt ttcttgtata
     3781 aatttagcat aatcatttag attaaatgca ttgattaaaa gctccccatc taaaaagcta
     3841 aaagctccgc tgcctactcc taggtattca tgatgagaac tgacatattc gtcattaagc
     3901 ttgttttttt ctaaagaaaa actccaacca ttgttttggg tatagtcttt aaaaaattct
     3961 cgtatgattt gataataagt aaattcatta tctttaatgc tcactcctag acttttagcg
     4021 atattatctt tggtaagatt tgatttcatt aaaggatagg ttgtgatttg ttgcggggct
     4081 aaatttttag caatttctaa gtcatttaaa agttgttttt cgttttgtcc tggaagattg
     4141 aaaataagat ctatactaaa aataggtaaa attcctaaag cttttgaaat tttttcttga
     4201 agttctttag atgaaccaaa tttattatat cttgccactt ttttcaaagt ttcatcatca
     4261 aaactttgaa tcccgcaact taaacgatca attatacctt taaacataga aagcttattt
     4321 ggatcaatat gatttggatc gctttcgcat gaaatttctt ttatattaaa taacttttta
     4381 caaagttcta aggtttttaa taattcctct tcatcaatca gtgttgtacc accacccaca
     4441 tacatggagg taaaatcaaa acctttattt ttcatgattt taatttcttc tctaagattt
     4501 tgaaaatata ctttggctaa attttcatca taataatatt tatgaaagct acaataagga
     4561 caaaaagtat ggcaaaaagg tacatgggca taaagcatat agcttttgtc ttgttttgga
     4621 attttttctt cgggttgttt taaaagttcg acattgaaac ctttttggag ggatttttcc
     4681 atcatagtat gagagtattt taaagctaaa ttttgaaata aattcataag tggcctatat
     4741 attaaaatat ttaagatata actttatcaa tttttagcta aaataggagt aaatttttta
     4801 tttcttaaat aaaaaatggg attaagtttt taaattattt aaaaaggata taaaatggat
     4861 aaagccaaaa ttgttcaaaa tttaaatgct ttgtttaaac aaagagcaga gttttactct
     4921 tattttgatg aaaatattgc caaaatcaat gatactgaag tatttgattt taagaatgct
     4981 aaaaatttaa atccagaaga ggtatataag caattttatc attttgatta tgctataaga
     5041 aaattattgc ctgctattta caaggtttat gaaattacag atacagattt agataaagat
     5101 ttttaattta tttagagaat agaacgaact attctctaaa agatatatct aaattttttg
     5161 attcttcttt tatattttta ctcgtgtctt cattttgctc aaatcctcca ccaaatgctt
     5221 tgattacatc tactatggaa ttggcataag aatatttagt attattaaaa gcaacggcag
     5281 cattaagcca attttgacgt gcctctaaat aatcttgcaa agacatttct cctatatcat
     5341 agcgttcttt agcaatttca tagattcttt tgtaagattg ttcgcttgct tgtgcattat
     5401 cgtattgtaa gcgtatagtt tttctagcta ctaaagcata gcgaatttct ccaaaagcag
     5461 taatcaaagt attttgataa tttacaaaag cttcatcttt attaagcttg gctaaattta
     5521 cattttggta aatttcaccc caatgaaaaa taggcagagt aaagtttcca cctatattcc
     5581 aagtcttaga acctccttta accaaggtat ctaaatcccc gctttcaaat cccaataatc
     5641 ctgttaaaga aaggctaggt aagaaagccg tgcgagctac tccaacaaga taattttgct
     5701 gagttaattt ttctaaagaa gagccaatat ctggacgttg aagcaagatg gtacttgaaa
     5761 ttccagttgg aatgtcaaat tctttaagat taaaaacttg atagctttga tttttgtaaa
     5821 gtatgtcatt taaatcattt gaagttaaaa tttttaaagc tttaaggtaa ttttctttat
     5881 ttaactttgc ttcattatat tgcaaagcca tactttctaa gttggctctt gcttgagcaa
     5941 gttcatattc acctacagca ccaacttgaa atttttcatc attaatccta taaatttctt
     6001 ttgccgattc ataggtttct ttaagagcat tttcattttc ataagcattt acaagattaa
     6061 aataagtttg aactgtattt gaaataacag aaagtcttgc agcttcataa tcatactcac
     6121 ttgctttaaa gcctgatttt gaggcgcgat atgtatcgcg atattttccc caaagatcga
     6181 tttcatagct taaattaagt cccattttaa aatcattacc gtaacttact tccccagttc
     6241 gattgcttgg agcatttata gctgtttttg cacgacttcc gcttgcacta ccatcaaatt
     6301 ttggcaacaa actgctaaaa tctataccta attgagcagc agcttgttcc atgtgtatga
     6361 aggcaagttt taaatcatta ttatttttaa gtgctaaatc aaccacttta tttaaatttt
     6421 catcatcaaa gtctttccac caattttttg tgatagagct attgttttct ttttcccaag
     6481 ataaggctcc aagcttatta tcaatgctat agtttgcttc gggagtattt aaatttggac
     6541 ttaaagagca agctgaaatc aaaagagtaa aacttgctat agtgctaatt gaaattattt
     6601 tattcatgaa ccttacctct ttttttatct agccattcat taaaattttc taaaagatag
     6661 aaaaataaag gcacgaagaa tatcgctaaa gttgatgctg cgatcattcc accaacaagc
     6721 cctgttccta aagagtgtct tgaagcactt cctgctcctg ttgcgaaaat cattggtaag
     6781 accccaaaag taaatgccaa agaagtcatt atgataggac gaaaacgaag ttttgctgct
     6841 gcaacagctg cttcaaaaac tcctttacct tttttaaagc gctcttccat tgcaaattct
     6901 acgattaaga tagcattttt agctgaaagt ccaatcaaga gcaaaagtcc tgtttgaaaa
     6961 tatatatcat tgctaaatcc tcttaaatat accaataaaa atgatccaaa taccgcaaaa
     7021 ggtacagctg ttacgactgc taaaggtata agccatcttt catattgagc agctagaatt
     7081 aaaaagacaa atatcatacc taaagcaaaa gcataacttg ctgttccttt actagaaact
     7141 tcttgataag ctgatccact ccaagctatg gaataatcat cccctaaagt ttcttttgct
     7201 acttgagcaa tcgcttctat agcttgacct gaagtataac ctggtgcggg ttgaccttga
     7261 acttgtgctg ctgggaaaag gttgaatcgt tttacatcat caggccctga acttctttgt
     7321 aaagttaaga aagaatcaag tggtatcatt tttccatcat ttgatcttac aaaaatattt
     7381 tttaacgcat cttgtgtatt tctaaaatca ccttttgcgc ggatatttac ttggaaattt
     7441 ttacctagca tagaaaaatc attaacataa taagtgccta tagttgcatt catcgtgtta
     7501 aaaacatctt gcatgttaag attgtagtgt tttaatttat ctctatcaat tataagcttg
     7561 tattgaggga aagttgtatc aagggttgtt cttactcttg atagctcttt tctttggttg
     7621 gccacagcaa caagtttatt tacatctttt tgtatttcat catagctttt tccgcttttg
     7681 ttttgaacat acatttcaaa accgcctgtg atacttaatc caggtatagg aggtaagcct
     7741 ataaatacac ttgaagcatt gcgatcaaaa gcaaattttt tattaagttc ggctataatt
     7801 tgatcagcgc ttacatttct atctttccaa tcttgcaaac ctataaacat tgcagcggca
     7861 ttttctttga gtgaacttgt aaaaagatca aatcctatca tagccattgc atctttaact
     7921 ccattagttt ttaaaacttc ttggcttatg tgatcaacct ctgaaattgt tctatggagt
     7981 gctgaagctg aaggaagatt aataatgcta atcatcaaac cttgatcttc ttcaggaact
     8041 aaagaatttg gtactgcttt atagagataa aaaattgctc caagcataat acaaaaaatt
     8101 aaaacaaaac gaatggttct ttttaggata tatgctactc ctgcgctaaa tacagaggtg
     8161 ctccaatcaa aaaaatcatt aaatttcttt acaaatttaa atggctctcc ttcattgcgt
     8221 cgcaaaaaga gtgcacataa agaaggtgtt aaggtaagag caacaaaacc tgatatggtt
     8281 acagatatag ctaaggtaag agcaaattgt ctttgaattt ctccaacaaa acctgatata
     8341 aaagaaactg gtacaaaaac agcacaaagc acaagaacaa ttgaaataac cggagagcta
     8401 acttcttgca tcgcttggat agcagcatct tttacgctta tttgctcatt ttcatgtaaa
     8461 atcctatcaa tattttctac aactataatc gcatcatcta caacgatccc tatggctaaa
     8521 attaaagcaa aaagcgtaag caagttaata ctaaaaccta aaacataaag tccagcaaaa
     8581 gttcctaaca atgaaacagg tacagctatc ataggaataa gtgttgcacg gaaattcttt
     8641 aagaacatat acataacaat gataactaaa attagagctt caacaaaagt tttaacaact
     8701 tctttgattg attctattac aaattttgtt gtatcgtaag gaattttata tgttaaacct
     8761 tttggaaaat tttttgaaag ttcttgcatt ttggcttgaa caagttctgc tgtatgcaat
     8821 gcgtttgccc ctgattgaag attgatcata attggaactg catcattgcc atttaatcgt
     8881 ccttgtgagc tgtattgttg tgatcctatt tccacatcag ctacatcttt aagtcttaaa
     8941 aatgatccat cattatttgt tcttaaaata atattttcaa attcattagg attttgtagt
     9001 cttccttgca tagtgattga ataaacataa ggggattttt gggttacagg ttcttcgcca
     9061 attttaccag ttgcgtattg ggcattttgg tcattaaccg cagaaattac atcagtagct
     9121 gtgattccaa atttatttaa taaatcaggc ttgagccaaa ttcttaaaga ataattacga
     9181 tttcctatag cgtttgcatc tccaactcct ggaacccttt ttaactcatc taaaacattt
     9241 aaagtgatat agttatatac atctactgca ctcattgagc catcacttga atacatagaa
     9301 attgcagcaa gtgttgttga ggaagttttt ctaactgtta ctccaagttt tttaactgca
     9361 tctggcattt ttgcagttgc ggctgaaatt ctattattaa catctatggt ggcttgatca
     9421 ggatctgtac cgatatcaaa ataaacagtc aaactcatag ttcctgaaga acttgaagtt
     9481 gaatccatgt aaatcatatt atctgcgcca ttgattgcat cttcgatagg acttgcaact
     9541 gttgaagcaa tggtttgtgc atcagctcct gtgtaagttg cacttacttt aactgtagga
     9601 ggggttaaag aaggatattg ttctataggt aaatttgtaa gacctataac tccagctaaa
     9661 gaaatgataa ttgcaacaac tgaagcaaaa acaggtcttt cgataaaaaa tttagaaaac
     9721 attattgtgc tccaatttct ttaacttcgc taccaacttg aattttttta aagttatcta
     9781 aaatgatttt atcgccattt tgcaatcctt tgtcaataat ggcatattca ttgttttggt
     9841 agcttatatg tacagaagat ttttctactt ttccattttt aacaagaaga acataaacat
     9901 cattttgatt ttgtttaaca gctatttgag gcactttaaa gccatttttt tgtataaaac
     9961 cttctgaagt aattgttgca aaagcacctg gtaaaagtgt tgagttgttg ttgtcaaata
    10021 tagctttggc ttttactgtt ccactattag catctataac agaatcaata aaataaagtt
    10081 tgccttgaac ggtttctcca ttaagattta aatttgcatg aatgctgtct aaatcccatt
    10141 ttccactttg agtattgcgg actaaattta gtttatctgt atctgaaata aagaaatctg
    10201 cgtaaatagg atttaaattt gtaactctaa ctagttcagt tgttgaagca cttacataat
    10261 ctcctatatt aactaaagca tctcctatag taccatcaaa aggagctttt atttcggtat
    10321 gatctagatc aattcttgca tttgcaagct gtgctctagc acttgctaga ctagcttttg
    10381 aattgttaaa tgtagcaaga gaagagtcgt attccttttg agagattgca cttttactaa
    10441 aaagagcttt agaacgatta aaatccttgc ttgcattttc gaaagttgcc ttagccatta
    10501 aagcttgtcc gtaagctgaa tcaacactag ctttaaattt atcttgttct ataataaata
    10561 atgtttgtcc tttttttacc ttatctccag ctttaaaaag tttatttact attacgccgc
    10621 taacttgagg ttttataatg acatcataat cactgacaag tttagcaggg taagtaaaac
    10681 taagtggtaa atcttcagat ttagcactca tggttgttac aggttgaggc ggcatttgta
    10741 tttttggtac ttcttctttg ctgcaagcag tgagtaaaag cacaacacct aaagctaaaa
    10801 tagtattttt ttgaaataat ttcatggttt tgccttgaaa aattaaatta aaaattgtaa
    10861 tttttattac aaaaattttt ggctaattat atcttaattt tggttaataa aattattttt
    10921 taagctttgg agctattgat tccatttaga aaaacattta caacaaattc aacatgttct
    10981 ttttgttctt ttttattttt caaaggagcg ttaattaaaa cattaagatg
//
LOCUS       DAQSLY010000048        11010 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.048, whole genome shotgun sequence.
ACCESSION   DAQSLY010000048 DAQSLY010000000
VERSION     DAQSLY010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11010
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.048"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1066
                     /locus_tag="R2H98_000990"
     CDS             <1..1066
                     /locus_tag="R2H98_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEE9023882.1"
                     /translation="LELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQDDDI
                     YFDFDKDEDTYMVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKNDFL
                     DKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPEKKI
                     EILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNAFDN
                     EIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNPTLS
                     YKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILRRFEFLA
                     LIEGIQAPSLKNHTLKVSLI"
     gene            1063..1446
                     /locus_tag="R2H98_000991"
     CDS             1063..1446
                     /locus_tag="R2H98_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEE9023883.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            1439..2122
                     /gene="rsmD"
                     /locus_tag="R2H98_000992"
     CDS             1439..2122
                     /gene="rsmD"
                     /locus_tag="R2H98_000992"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEE9023884.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            2181..3227
                     /locus_tag="R2H98_000993"
     CDS             2181..3227
                     /locus_tag="R2H98_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEE9023885.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNSDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            3227..3568
                     /locus_tag="R2H98_000994"
     CDS             3227..3568
                     /locus_tag="R2H98_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023886.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            3631..3828
                     /gene="flgM"
                     /locus_tag="R2H98_000995"
     CDS             3631..3828
                     /gene="flgM"
                     /locus_tag="R2H98_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEE9023887.1"
                     /translation="MINPIQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            3871..4305
                     /locus_tag="R2H98_000996"
     CDS             3871..4305
                     /locus_tag="R2H98_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEE9023888.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESITPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            4315..6141
                     /gene="flgK"
                     /locus_tag="R2H98_000997"
     CDS             4315..6141
                     /gene="flgK"
                     /locus_tag="R2H98_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEE9023889.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITAGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            6158..6922
                     /locus_tag="R2H98_000998"
     CDS             6158..6922
                     /locus_tag="R2H98_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEE9023890.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            6926..7690
                     /locus_tag="R2H98_000999"
     CDS             6926..7690
                     /locus_tag="R2H98_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEE9023891.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(7683..8864)
                     /locus_tag="R2H98_001000"
     CDS             complement(7683..8864)
                     /locus_tag="R2H98_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEE9023892.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(8861..10420)
                     /locus_tag="R2H98_001001"
     CDS             complement(8861..10420)
                     /locus_tag="R2H98_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEE9023893.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDAFST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLSCAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(10410..10997)
                     /locus_tag="R2H98_001002"
     CDS             complement(10410..10997)
                     /locus_tag="R2H98_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEE9023894.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         4172 a         1697 c         1589 g         3552 t
ORIGIN      
        1 attagaatta agaattttta gatttgataa aaccaaggat tatgaggctt attataaacc
       61 ttatatttat gataattatg aaaattttgc aagtttttat gatttgcttt tgcaagttca
      121 agatgatgat atttattttg attttgataa agatgaagat acttacatgg ttgtaaataa
      181 gcaaatcata ccacttttta cacctttaga aaaaatagca aaagaatttg attttagtct
      241 ttgtatcgag cctttaagca caaaaagagc cattaaagat cttatcatcg ataaaaatga
      301 ttttttagac aaatacaaat atcttgaaaa atttggtgat gaagaggata aaaaacttta
      361 tgcaaaatat gattatttat attatgcaag tgaaatttta gactatcttc ctgaatatat
      421 gggcgatgga gtgttttatt tggcttcaaa aatgatagaa aaatatcctg aaaaaaagat
      481 agaaatttta aaaactctag cagataaaga aaagggtatt ttttatcatc ttgaaagcaa
      541 aaatgaaatt ttagaaacaa cgatcaaaaa cctacaaaat gaaattttaa atttagggct
      601 ttttgataaa aatattttac actttgattt acctaaaacc aatgcttttg ataatgagat
      661 caaagaactt aaagaaatta aacataattt taaagatttc aatatagctt tttatggttt
      721 taatgcttgc gatactttaa aatccaaact taaggctaaa tttatttcct atgaaaacag
      781 tataaaaaat aatggcttta gcttgcttaa tctaaatcct acgctaagct ataaaatagc
      841 cgcagatatt gttttggacg cttatgatag cggggctgat tttatggtag taaaagaaga
      901 aaaagatttt tatctttttg atacttgtgc taaaaaactt atgcaaacaa gtggaaggga
      961 atttgaagac ttttatattt tgaggcgttt tgagttttta gcccttatcg aaggcataca
     1021 agctccatca ttaaaaaatc acactttaaa ggttagtttg atatgaaaat ctctttagaa
     1081 tgcaaagatc tcatcataga aaaaacttta gaactttttt taaaagatca tttggtaatg
     1141 aaaaaaaatt gtgatttcat cattagcgat gaaaaaattt ataccgcaaa acccttattt
     1201 atcatctcta aaaactctcc atttttaagc ataccattta gcaaagaagc cttgtttgag
     1261 tctttaaatg aatttgataa tgccttaaaa gcagcagctt tgcaacttgc acttgaacaa
     1321 aaaagactgc ttgaagaaaa aattgacgct attgctttgg aatttaaaaa agattatgaa
     1381 aataaaatcg atcttgccat aaaagatctt aaaaacaaac tcgtaaaagc acttaatgat
     1441 gaatgatgaa tttataagcg ttaaagactt ttttaatcac aatgaaaaaa gaaaaaaatt
     1501 tcttcaaaaa caagaaatta aacctcttaa agaaaaaaca aaaaaaacta aagaaacaaa
     1561 gctttataca aatatagaaa gtggtaaata caaagggaaa aaactacttt tacctagtct
     1621 tacaacaaca agaagtacta aaagcatagt caaaagttgt gtttttaatg taataagaga
     1681 agatttaaga agtaaaattt tcattgaagc ctttggagga agtgctttaa tggcggctga
     1741 agcactaagt aatcatgctt taaaagctta tgctatagaa cttgatgtaa aagcttataa
     1801 aattgcttta gaaaatgcta aaaatataga tccaaattta gaagtgatcc atgcaaatac
     1861 ttttgaaatt ttacctaaac tcatagaaaa ttcaaaaaat gaaatcatct tatatcttga
     1921 cccacctttt gataccagag aaggttttag cgatatttat gaaaaaattt atcatttttt
     1981 agaaaattta gatttaaaga ctttaaattt aatcattttt gaacaccact caaccataaa
     2041 aactcccgaa aaaatccaaa attttcaaaa agtcaaagaa aagaaatttg gatcaactag
     2101 cttaagcttt tacgcttctt aacttacttg gaacacttct tgcttgatct atcatcaaca
     2161 atagattaaa ggaagaatcc atgagagttt taacgatatt tttactcttt atgacaagca
     2221 tttttgcagt gcaaatcaag gatgtagcaa acactgtagg tgtaagagat aaccaactta
     2281 taggttatgg acttgttgta gggcttaatg gaagcggcga tggaacaagc tctaaattta
     2341 cactacaatc catctcaaac cttttgcaag gtatgaatat caaagtagat cctaacgata
     2401 tcaaatcaaa aaataccgca gctgttatgg ttacagccaa acttccggcc tttgcaaaaa
     2461 gcggagataa acttgatatt accgtttcat ctatgggtga tgcaaaatct ttacaaggcg
     2521 gaacactttt actgactgca cttcgtggga ttgatggtga aatttatgct atagcacaag
     2581 gctctatctc aacaggaggt ttaacaccta gaccaggagg agcaggttct cactcaactg
     2641 ctgcaaccgt aatgggcgga gctaatgtag aaagagaaat tccacaaaat tttagtcaaa
     2701 acagtgatct aaccttaagt ttaaaagtag cggactttaa aaccgcaaat gatatagaaa
     2761 gagttttaaa tactgtcttt ggcgaagaag tagctaaagc tatcgactct cgcacagtaa
     2821 aactcaaaaa acctgaagat ctttcaaatg ttgattttat ggcaagagtt ttagaacaag
     2881 atatagctta taaaccacaa agcaaagtta tcatcgatga aagaacagga acagtgattg
     2941 ctggagttga tgtagaggta gaacctgttt taatcactca taaagatatc accataaaaa
     3001 tagatccaaa caataacgca gtagctaatc aaaatgaaat cgatatgaaa gatggtggtt
     3061 ttgtagatcc aagttcaaat accttaagaa tcaacaatgc aaaaagcaca gttgcgaata
     3121 tagctagaat gcttaacaaa cttggagcaa ccccaaatga cattatcgct attatggaaa
     3181 atttaaagcg cgcaggtgca attaacgcgg atttggagat catctaatga aagtggataa
     3241 ttttttaaat acttatagta tgaatagcgc tttacttgat cgtgcagcca aagcaagaag
     3301 cttagaatca agtattaaaa taaatgataa tgatatagtt acaaaaacca aagaagatga
     3361 agccttaaaa gaacaaacag atgcttttga agcatttttt ttaaagcaag ttttagatgt
     3421 atctttaaaa agtcaaaatt cactctttgg aaaagatgcc agtgatgaaa tatactcttc
     3481 catgtataac gatactatga gtaaagcttt aagtggaggt atgggttttt caaaattatt
     3541 atacgatttt ttaaaagaaa ggggttaagt tttttaaatt tgggtcgata tggtttgtag
     3601 aggattataa ctaagatcaa ggaggcagaa atgatcaatc ctatacaaca aagttatgtg
     3661 gcaaatacca cattaaatac aaatagaata gataaagaaa ctaaaacaaa cgatactcaa
     3721 aaaacggaaa atgataaagc gagtaaaatc gcagagcaga ttaaaaacgg tacttataaa
     3781 atcgatacaa aagctacggc tgctgcgatt gctgactctt taatctaaaa ctttcattct
     3841 cctttttttt gagagagaaa aggagaaaat atgcttaaac aaagacttga tgaagtaaat
     3901 gctatcttag caaaacttat tgctttaacc gaagaagata tagaaaatat caaagtggct
     3961 aaacatgaga gtataacgcc aagtgtagaa gaaaaaaaca aacttattgc cgaatttatt
     4021 acagctaaaa aacaacttga tgttgccttg gttgagctaa ataatagctc tacaaaaggg
     4081 cttagtgaac tcttagatga tgaagataaa caaaaactag atctacttaa aaaaaatctt
     4141 caaaaccttc atagtaaaaa caaagagtat gctaaatttg ttcttattgt caaagatttt
     4201 cttgatggct tagtaaataa aatgtttgat atcaatgatg gaacaaataa tgcttatgga
     4261 gataaaaaga caaatccaga gtcaattttc aagatcaatg tataaggatt tataatgggt
     4321 atttttggaa cattatacac aggtgttaca ggcttaaagg caagcgaagt tcaaatcgca
     4381 acaactggaa acaatatctc aaatgctaat gcaacttttt atacacgcca aagagtagtg
     4441 caaactacaa atgggtatat taccgcaggt ggagttcaag taggcacagg aactgctata
     4501 gaaagtatag tgcgtttgca tgatgagtat tcttactata aattaaaagg tgcatcaaac
     4561 caactagaat acactaaata tatggcttca accttacaag aaatcgctca gcgttttcca
     4621 gacttacaaa atactggaat tttgaaagat ttagaaaatt ataacaaagc ttggaatgat
     4681 tttgcatcta accctaatga aaatgccaca aaaatagccc ttgtaaaagc ttctcagacc
     4741 ttaacagaaa gcgttaataa cacttttgca accttggata aaatccaaaa aaaagtaaat
     4801 gatgatatta aaaatacagt tgatgagatt aatagaattg gcgaagaaat tgctactata
     4861 aataaacaaa tttatggaca agaagcctta ccaacagaac acgcaaatga acttagggat
     4921 agaagagatg aacttgagct tactctttca aagctagtta gtgcagttgc aagcaaaaat
     4981 gaaatcaatc aagacaatcg ccttgataca accatcactg atccaggaca tcaatacaat
     5041 ctaagtatag aaggttttag tatagtagat ggaataaatt ttcatccttt aaagcttgat
     5101 tatgatgata aaaataaatc ttatagcatt tattatgaaa ctcctgatga aaaagttcgc
     5161 gatcttactg caaaaattag cggtggacag cttggtgctc aacttgactt acgcggtaga
     5221 aactatagca aaagcgaagg aaaatatgaa gatggaatta tccaaggtta tatggattct
     5281 ttagatactt ttgctaagac catgatcaat gaaactaaca atctttatgc aagttctgcg
     5341 aaaagttctg ttacttctga ttatctatct gggcttaagg gagatattcc tttagttaat
     5401 tacgacagaa ccatacaacc aggaagtttt gatatagtca tttatgatga taaaggcgat
     5461 aaaaaactca ccaaaaccat caccatagat gtaaatacaa ccatgaatga tatcatgcgt
     5521 caaatcaatg ctaatacaga tgataataac aataaaaatt caaacgatga tgttgatgat
     5581 catatcaatg caagttttag ctacgatgca aaaactggag atggtttatt tcaaatcaat
     5641 gcaaaatcag gttttaaggt agccattgaa gataagggca caaatttcgc aggtgcgttt
     5701 agtataggtg gttttttcag cggaactgat gcaagtaata tgaaagtaaa agattccatc
     5761 ttaaatgatc caagcacagt aagagcaagt ttaagtgggg ttgatagtgg caatgacatg
     5821 gcaaataaaa tcatccaact tcaatatgaa aaagttaatt tttataatga agatggcact
     5881 atcgataatc ttaccatgga agaatattac cgcaaactta caggtaaaat agcctcagat
     5941 ggtgaaaata acaatgttgt caattcaagc aatgaaactc tttataattc tgtttatagc
     6001 gagtaccaat ctaaaagtgg cgtaaataca aatgaagaat tagccgccct tatacaatat
     6061 caatcaagtt acggtgcagc agcaaaaatc gtctcaaccg tagatcaaat gcttgatacc
     6121 ttactagggc ttaaatctta agctctagta atatcaaatg aaaaatttta tccatcttaa
     6181 agctaagctc gattttttag ccaatcaaaa aaataccaat cattcccttt ttgaaactcc
     6241 agatcctttg caaattgcta aaattcacaa tgatgaattt attgccttaa tttgtgcttt
     6301 atttgcctat ggaaatgcta aaaatatagt aaattttcta aagaaacttg atttttcttt
     6361 attaaacctt caagaaaaac aaataaaaaa agaacttaaa aatttaaaat accgcttcca
     6421 aaatgaaaaa gatatacaag aaatttttat cactctttca aggctgaaaa atgaaatttc
     6481 actctacgaa cttttttatc aagcctatca agaaagagaa aataccacag atgccatctt
     6541 agcttttatg caaaaaatca aaaccttaaa ttcatattca agttatggat atgatttttt
     6601 ctttggaaaa atttggcaaa acactcctac ttcacctctt aaacgctata atatgtatct
     6661 aagatggatg gttagaaaag atgaacttga tcttggactt tttaccaaaa ttcacaccaa
     6721 agatctttta attccacttg atacacatgc acataaaatt tccttgactt taggacttct
     6781 aaagcgtaaa atatatgatt ataaaagtgt tttagaactc acacaaaatt taaaaaaatt
     6841 agatgcaaat gatcccataa aatatgactt tgcactctat cgtttagggc aaagtaagga
     6901 aattgacaaa tttaaggagt gaagaatggg ttttgagcac ttaaatacga tttattattt
     6961 catacttttt tttgtagctc tttttgctgg ttttatagat tctattgtag gtggaggagg
     7021 acttattact ctaccagcac tcatagcctg tgggattcct gcgcatttat ccttagcaac
     7081 aaacaaactc caaagcgtct ttggttcttt tacggctact ttaacttatt ttaaatccac
     7141 cactctacct catcttgctt ggggtgtttt tttcacagcc ttaggagcag ctataggaag
     7201 ttatagtgtt ctttttgtaa aagatgagca attaaagctt attatcttaa tctttttaac
     7261 tcttaccttc ttatatacag ccttacgtcc caacttaggc aaacacgaaa gcgaacctaa
     7321 aataaaaaat atcaaaattt ttcatttaat ttgtggctta actttaggat tttatgatgg
     7381 atttttaggg cctggaacgg gttcattttg gatttttgct tgtgtgatgc tactaggttt
     7441 taatatgaga aaagcgagca ttaatactaa aattttaaat ttcacaagca acatcattgc
     7501 tcttgctata tttttatggc aatatgaact tttatgggct gtaggtttgc ttatgggtgt
     7561 aggacaagtt ttaggagctt atttgggttc aaaacttgtg ttaaaaacta atggaaagtt
     7621 tataaaaact ttatttttaa tcgttgtagg agctactatt attaaagtag cttgggatta
     7681 ttttagttaa aattgacccc tgagctaagc tcccacatag gtaaaaatat acctaaagcc
     7741 aaaaacaaaa ctaaaagcgc tacaaataaa gtcatcatag gctctaaaaa aatcaaaaat
     7801 ctatccatca aattttcgct tttttgttga taatatttgg caatttcttc acttaatact
     7861 tcaagtcttc cacttttcat cgcaacacta agcatagaaa acaccaaaga atcaaaaata
     7921 tcaatctttt taaaagcctg acttaactca agaccagaat ctataaaact aaaaagtttt
     7981 ttatactgaa aaattaaaaa tttattttca agccctataa tagctaaatc aaaagcttta
     8041 gatattgaaa ttccattttt taaaagcaaa gaaaaaacca taaaaaaata ataattttga
     8101 ttataaataa tcaaacgaga aatcaaaggt acttttaaaa ataaaaaatc gcaagaaaaa
     8161 gcaaaagaat gaaaattttt ataagctaaa ataagcataa caataaaaat aacaaacaaa
     8221 aatatgcaaa aaattccata gtcatctaaa aaattataaa tttctaacat tacatgcgtg
     8281 ataaaaggca aactcgcgcc taaattttca aataaatctt taaaattagg cactacaaaa
     8341 agcattaaaa acaaaaatgc tccgataata cttaaaaaaa ccaaagtagg atatctaaaa
     8401 gcctttttta attgtttttg actctctaag cttttttctc gaagtttaga aatttgacta
     8461 aacacttcac tgatttttcc tgtcttttca gccgttttaa tcaaagctaa ctccgcacga
     8521 tttaatccaa aattagcatt ttcaaaagct tgatttagat tttgggctaa aattaaattg
     8581 tctaatattt ttttcataat cttgcaagag tgcataagat ataattctct aatcgcttct
     8641 tgaacactta atccaacttc acacaacaaa gctagctctt taaaaaagag tataaaattt
     8701 tcatctttta atctctgaaa attagatttt tgaatttctt ttatatcaat gattttccaa
     8761 ttctttgata aggcttttgc ttgtgctgta tttaaatttt cagcttttat agtttttgta
     8821 taattttgat tgtttttaag aaattccact tcataaaatt tcatcttaca acccttaaaa
     8881 gctcatctat acttgtaaga ccttctttgg ctttttttaa accttgttca aacatagttt
     8941 gaaagccata tttttttgca agctccatta aaatcgtttt atcttgattt tccctaattg
     9001 cacaagataa atcttcattg atctctaagc actcagcgat taattctctg ccaaaaaatc
     9061 cactatgatg acaacgctca catccttttg gttcaaaaaa ttcaccttca aattcaatat
     9121 aatgtttttt gcttttttgc ttacaccaag gacaaagttt tctaaccaaa cgctgtgcta
     9181 taacaagact caaagccgat gctatcaagt aactttttgc ttgcatatcc aaaagcctat
     9241 caatggtact aaaagcatca ttagtatgca aggtgcttaa aagcaaatga cctgttaaag
     9301 aagctttaag tgcaatatct aaactttctt catcgcgaat ttctcctatc atgataatat
     9361 caggatcttg ccttaaaatt gctcttaaaa cactattaaa ctcgactcca acttttgaat
     9421 tgagcaaaat ttgctgcact aaaggaattt tatattctat aggatcttct gcggaaataa
     9481 tctttttttc aatacttttc aactcattta aacacgcgta taaagttgtg cttttaccac
     9541 tacctgtagg accggttaat aaaatcattc cattgggacg atgtaaaatc ttttttaaaa
     9601 tttctaaatt tttatttcca agatttagtt tatacaaatc caaaatttct ttatcatgtt
     9661 ttaaaattct tataacaaca ctttcgccat aaatcaaagg caaacatgaa acacgaaaat
     9721 catatctttc attttcaaaa tctaattcaa aacttccatc ttgtgttttt cttgattcag
     9781 ctaaattcaa acaagctaaa aatttgacat gaaaaaccaa agcttcataa atatccttct
     9841 caaaaatagc aaattcacgc aaaattccat caaccctaaa cctaatcaaa gcatcatcat
     9901 ttcttgcctc tatatgaata tcactcgcat gaaaagataa aatttcatgt aataaaaaat
     9961 caaaaatttg actgatgcaa ctttgatcat ctcttttgtg attttcttgc cattcaagtc
    10021 taagcttaat gcttaatctt ttaatctcct cttgaatgcg aatttgattt aaaattttag
    10081 ctatctttaa ttcatcggca attgcagtgt cgattttttc acaaatcata aaagtcttaa
    10141 cttgctctaa aagctctaaa gaacaaggtt tggatctaat aatcataaag ccgtcattgt
    10201 ttttaataag cagaaattta aattttaaaa gtaaagaaaa aggtatacct tcataaataa
    10261 aatcattatc ttcatctaaa tcaacaaaat gcaaattaca aaaatttgct aattttttaa
    10321 aaaaatccca agaagtgata ttaaatttag tgcaaatttc atcaagactt atttcattat
    10381 caatataagc ttgaaaaatt ttatccattc tactttccat ctaattccat taaaccataa
    10441 taatttatat aagcatctaa agcactttga gcttcttttt cttcgcctaa agctctttta
    10501 gcctgagcaa aaatcagcca agaatcttgt ttttgcttgt caagttcatt ggcttttaaa
    10561 gcccaaaata ttgtcttttg ataagcttta atatcaaaat acttcttagc taaatttaat
    10621 gccttttcat agcttggatt ttgataaaaa gattttttta aatcagaaat atttaaaatt
    10681 ttagaatcaa tttctatctt gctaatatgt gtattttcct gcaccgcttt aacttcttct
    10741 agttctttat ataacttttc cctagaaatc ttattttttt cttgtaaaat ttgcgcttga
    10801 agaatctttt gctccaaatg ctttttatgt tcaatagctt gcaaataaat atttttttgc
    10861 ttattatatt tttgcattag cacaaaaaaa caaaatgcta ttactgatat tagaataatt
    10921 aataataaat attttaaata ttttttaagt aaaaagtatt tatacctaag ctcaagctct
    10981 ttaattcttt cttgcatatc ttaccttaat
//
LOCUS       DAQSLY010000049        10850 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.049, whole genome shotgun sequence.
ACCESSION   DAQSLY010000049 DAQSLY010000000
VERSION     DAQSLY010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.049"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            50..745
                     /locus_tag="R2H98_001003"
     CDS             50..745
                     /locus_tag="R2H98_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEE9023895.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            742..1995
                     /locus_tag="R2H98_001004"
     CDS             742..1995
                     /locus_tag="R2H98_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEE9023896.1"
                     /translation="MIIPEIVTPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1996..2490
                     /gene="purE"
                     /locus_tag="R2H98_001005"
     CDS             1996..2490
                     /gene="purE"
                     /locus_tag="R2H98_001005"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEE9023897.1"
                     /translation="MNFVSILMGSKSDYEAMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2500..3036
                     /locus_tag="R2H98_001006"
     CDS             2500..3036
                     /locus_tag="R2H98_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEE9023898.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3048..3911
                     /gene="glyQ"
                     /locus_tag="R2H98_001007"
     CDS             3048..3911
                     /gene="glyQ"
                     /locus_tag="R2H98_001007"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEE9023899.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSVEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3898..4623
                     /locus_tag="R2H98_001008"
     CDS             3898..4623
                     /locus_tag="R2H98_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEE9023900.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDEFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4633..5349
                     /locus_tag="R2H98_001009"
     CDS             4633..5349
                     /locus_tag="R2H98_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEE9023901.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5346..6503
                     /gene="waaA"
                     /locus_tag="R2H98_001010"
     CDS             5346..6503
                     /gene="waaA"
                     /locus_tag="R2H98_001010"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEE9023902.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWFNPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSELDKVRLESLGAKNVKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHK
                     DEEELLLDHFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKK
                     ILLLDALGELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFNNVLISGKFIHNQKVLF
                     EEVENVYFCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKGIDARKSL"
     gene            6484..7236
                     /locus_tag="R2H98_001011"
     CDS             6484..7236
                     /locus_tag="R2H98_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEE9023903.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            7304..8641
                     /gene="ffh"
                     /locus_tag="R2H98_001012"
     CDS             7304..8641
                     /gene="ffh"
                     /locus_tag="R2H98_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEE9023904.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            8706..8933
                     /gene="rpsP"
                     /locus_tag="R2H98_001013"
     CDS             8706..8933
                     /gene="rpsP"
                     /locus_tag="R2H98_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEE9023905.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            8936..9178
                     /locus_tag="R2H98_001014"
     CDS             8936..9178
                     /locus_tag="R2H98_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEE9023906.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            9171..9710
                     /gene="rimM"
                     /locus_tag="R2H98_001015"
     CDS             9171..9710
                     /gene="rimM"
                     /locus_tag="R2H98_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEE9023907.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            9707..10411
                     /gene="trmD"
                     /locus_tag="R2H98_001016"
     CDS             9707..10411
                     /gene="trmD"
                     /locus_tag="R2H98_001016"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEE9023908.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            10422..10778
                     /gene="rplS"
                     /locus_tag="R2H98_001017"
     CDS             10422..10778
                     /gene="rplS"
                     /locus_tag="R2H98_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEE9023909.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
BASE COUNT         4050 a         1200 c         2053 g         3547 t
ORIGIN      
        1 tataattttg agcaattatt gaaaatctag atttaaaaaa gggaaaaaaa tgactcaaga
       61 agagcttgat gctttgatga atggtgatgt tgatcttgat tcagagacag aagcagaggt
      121 aaaaaccgaa gaatcgaata ccgaagaaga tgctttgatg ttagaagatg tcaaaatagc
      181 tgattacaaa cctaatccta gcgtggtatg gccaccaccc ccaccaaatc aggagcataa
      241 agttgtacat cagttagatg atgttacaaa agatagcgag cttaaagcaa cggaaatgat
      301 ggataagctt gaaagtatta ataatttttt tgcggattct gaaagtttac tcaaagagat
      361 aaataaagca atagaaaaaa atattgatat tttttctaaa cttaatgaaa aatttcctaa
      421 tgtggaaagt ttcagtgaag ctttagaatt aaacaatcaa gctaaaaaaa gttctaagga
      481 gattgtcgga aatcttcaaa gcggacaaga tgaagtgatg atggcaatgg atgcaatgca
      541 gtatcaagat atacatcgtc aaaaaatcga acgtgttatt aatgtaatgc gtgctttaag
      601 ccgttatatg agttccttat ttgaaggtaa aattgatgat aaaaaacgtg taagttctgc
      661 agtgcatatt gaaggtgata gtactgctga tgttgtaagt aatgatgata tagaagcttt
      721 aattgcaagt ttagggcaaa aatgatcatt cctgaaatag taactcctgc aggaaatttc
      781 acaaaattaa aaattgcttt agcttatggc gcagatgcgg tttatgcggg tgtgaataat
      841 ttttctttaa gatcacgcac tgcaagagaa tttaattatg aaagttttga agaagctatc
      901 aaatatactc atgagcgtgg taagaaaatt tatgttactt taaatggttt tcatttgagt
      961 tctcaaattg aaggtttaaa aagacatatt ttaaaattgc gtgagatgaa acctgatgct
     1021 tttattgtag cttctgttgg agctatgcgt cttgttaaag aacttgcacc tgaaatttct
     1081 ttacatgttt ctactcaggc aaatatttta aattatttag atgctcaagt ttataaggat
     1141 atgggtgcta aaagggttgt aattgccaga gaattagggc ttaaagacgc taaagcttta
     1201 aaggaaaatt gcgatattga acttgaagct tttgtgcatg gttcgatgtg ttttgcttat
     1261 tcagggcgtt gtttaataag ctctgtgcaa agtggaagaa tgagcaatcg tggatcttgt
     1321 gcaaatgatt gtagatttaa ttatgagctt tatgctaaaa atccagaaaa tggcacttta
     1381 tttcgcttag aagaagatga aaatggtact catattttta attctaaaga tttaaatctt
     1441 tgttcttata tagaaaaaat catgcaagaa aattgtatca gtgcttttaa aatagaaggg
     1501 cgtactaaaa gcgaatatta tgttgcgctt acaacaagga cttataaaat ggccatacaa
     1561 gatgctttag agggtaaatt tgagtcaagt aagtatgaaa aagagattgc tacacttaaa
     1621 aatcgtggtt ttacagatgg ctatcttgtt tcgcgtcctt tggaaaaaac cgacacgcaa
     1681 aatcataata caagcataga agaaggttct catcaagtgc atgctataag cgaagatgga
     1741 agctttttta aatgtaaagg gaaaatcgtt ttaaacacgc cttatgaaat tttagcccct
     1801 ttaggcgatg tgattcaaac ttgcgataat gaactaggta aaatttatca aaaagaggat
     1861 aaatatttta tagagtttaa aaaactcatt gctaaaaaca ataaggaatt tagcgaaatt
     1921 catagtggca atgaacatga aatccaatta ccaaataaaa tcagtgcatt aagtttttta
     1981 agaaaggaaa tatagatgaa ttttgtttct attttaatgg gaagcaagag tgattatgag
     2041 gctatgaaag aggctgctaa aactttagaa agttttgggg taaagtatga acttattatc
     2101 tcatcagctc atcgtagtcc aaaaagaaca aaagagtata ttgcaaatgc tgaagaaaaa
     2161 ggtgtgaagg tttttatagc agcagctgga atggcagcgc atttagctgg agctgttgca
     2221 gcttatacaa caaaacctgt tttaggagtg cctatgccag gaagtaatct tgcaagtatg
     2281 gattctttgt tttctacggt gcaaatgcct agtggaattc ctgtaggaac tttagctatt
     2341 ggtaaggctg gagcaatcaa tgctgcttat ttggctatgc aaattttagc tatttatgat
     2401 gttgatttag cacaaaagct taaagaagat cgtcttgaaa aagaaaaaaa acttgtatct
     2461 gattcaaaag aagtagaagt tttattataa gggataaaaa tgcaaaccta tcttgaactt
     2521 gaagaatttt gtaaacttgt gcatttaaat gaagatgtgg ttaagggtat gatggccaat
     2581 ggggctttaa attttaaaga agaagagggt aaaatttaca tcgaagctca tcaaggtact
     2641 tttagtgtag tgcctagttc tgcaaaatct caaactgcaa tggtaaattc aatgacttta
     2701 gcaggagaaa gttttgttga aaaaacaata ggaactattt taaatttaca tgaaaaagtt
     2761 ttagatgcta aagatgaaac acttgaagca ttaaaaaatg aaaataaatt tttaaaagat
     2821 gccctttatt ctatgcaaga gctttatgat gaagatagaa aaactataga aaccttaaac
     2881 aatgagttaa aacatgcgcg tgaagagata gaatttctca agcgtaaata taaattaatg
     2941 tggagtaaaa ctgcagaaat ttttggagct aagacagagc ctgatttgga aatgaataaa
     3001 aatttagaaa aacctattga aaatatggaa caataaagag agatacaatg actttttcac
     3061 aaatgatact taatttacaa aattattggc aagagcaagg ttgtgcgatt atgcaacctt
     3121 atgatatgcc agcaggtgca ggaacctttc atccagcaac ttttttaaga agtttaggaa
     3181 aaaaaccttg ggcagctgct tatgtggctc caagtagaag gcctactgat ggacgttatg
     3241 gtgaaaatcc taatcgctta ggtgcttatt atcaatttca agttttgatt aaacctagtc
     3301 ctgataatat ccaagaatta tatcttaaaa gtcttgaaaa tttgggtttt gatttaaaaa
     3361 gtcatgatat tcgttttgtt gaagataatt gggagagtcc aagtttgggt gcttggggtt
     3421 taggctggga agtatggctt gatggtatgg aagttactca atttacttat tttcagcaag
     3481 ttggcggtat agcagtagat ttagtaagtg ttgaaattac ctatggtctt gaaagaatag
     3541 ccatgtatct tcaaaatgtt gataatgttt atgatatagt ttggagtgaa tttaatggag
     3601 aaaaaattaa atacgcagat gtgcataagc aaagtgaata tgaatttagt aaatacaatt
     3661 ttgaagtaag tgatgttaaa atcttaaatg agcagtttga aaattcttac aaagaatgta
     3721 aaaatatttt agaacaagga ctagctttac ctgcttatga ttattgtatg cttgctgcac
     3781 atacttttaa tcttttagat gcaagaggag caatttctgt agcacaaaga caagattata
     3841 tgttaaaaat tcgtgaactt tcaaaaaatt gtgctgaaat ttataagaaa aatttaaatg
     3901 aagctgagtg aaatttataa ttttttagat caattaagtc cctttgatat ccaagaatca
     3961 tgggataata gtggaatttt gcttggagat agggatagtg aaatttcaac tgtttattta
     4021 agcttagata ttgatgaaaa tatcattaaa gaagcgagtg aaaattcttt aattatcaca
     4081 caccatcctt tgatatttaa aggtttaaaa gatttatatg acaagactta tcctagggct
     4141 tttatcaaag aaatgattta taaaaatatt tctttaatca gtatgcatac aaattacgat
     4201 ttaagtcatt taaatactta ttttacggaa gaaattttag gttttaaaat ttcttttaaa
     4261 gatgaatttt taatttatgt ggaaaattct atgtcttttg aagctttgtg tgactgggtg
     4321 aaaaaaaagt taaatttgca aattttacgt gtaagtgatt gtggcaaaaa agacattaag
     4381 cgcattgcta tatgtactgg aagtggcggg gatttaattt ctaaagtaga tgcggattgt
     4441 tttttaagtg gagattttaa atatcatcaa gctttagagg cgcttagtaa tcaaatcagt
     4501 cttattgatt tgggtcattt tgaaagtgag agatattttt ctcaatgttt agcaaaagac
     4561 ttgaaaaatt tgccgctaca agttataata acagtttcaa aaaatccatt tcaatatttt
     4621 taaggaaaat aaatgaataa atatctcgaa caattagtgc ttttatcaaa aatagatcaa
     4681 gaaattgata gttatgaacc aaaaatagac agtattaata agactttaaa agatgctgag
     4741 ttaaaaatag aaaaaatcaa cgcagattta gaaaaaatcg atgaagaaat caaagatata
     4801 gaaaatcaaa aaatacaaaa taatgctcat atttccgagt tttcagcaaa aattaaagat
     4861 ctttctaaaa aaagtggtgc ggtaaaaaca gaaaaagaag ctaatgcttt aaaaattgaa
     4921 gaagatattg caaaagaaca attagacgct gcaaatgatg agattgtaag actagataaa
     4981 attttagaga ataaagaaac ttataaaaaa gaacttgaag aagaaaaaat caaacaagag
     5041 caaaatatta acgagattag agtaagcatt aaatctgaaa tggaagttct tgaaaaagat
     5101 agaatgagtg tttatgataa aaaaactaaa cttgtgagtg agatgaatca aaaagtttta
     5161 agtttttatg agaaaattcg caaatgggcg aagaatactg ctgtagttcc tgttaaaaaa
     5221 caagcatgct atggatgttt tatgaaaatt tacgataaga cttatctgtc cgttgtaaaa
     5281 ggtgaagaga ttgtaacttg tcctcattgc ggaagaattc tttataaaga gcaagaagaa
     5341 caaaattgat ctttttttat tattttttaa cttggacggc atttttattt tgtgccgtct
     5401 ttattctttt gctttctttt ttaaaatcca aatacaaaat tagtttaaaa tctcgatttt
     5461 ttctttataa aaatttacat caagaaaaag ctgatgtaca ttttcatgct tgttcttacg
     5521 gggaggtaag aagtattaaa gctttggttt tgaaatttga ttcaagaata actactatta
     5581 ctcaaacagg ttttgaatgt gcaaaagaat tttgtaaaaa ggtaaattat cttgcttttg
     5641 aaaatttttt gcctttttgg tttaatcctt gtaaggtttt ggtaattttt gaagcagaat
     5701 attggcttat gcttgttttt atggcacgta tttataaggc taagattatt ttgcttaatg
     5761 cgagaatatc tgataaatct tatcattctt atcaaagatt ttcttttttt tataaaaaaa
     5821 ttttttctta tattgatgaa gtttttgctc aaagtgaatt agataaagta agacttgaaa
     5881 gtttgggagc taaaaatgtt aaaattttta aaaatattaa ggcaaattta gaaattaaaa
     5941 ataataaaat ttataccaaa cctaaggaaa aacttatcat ttttgccagt actcataagg
     6001 atgaagaaga gcttttgctt gatcatttta aactagaaga aaatgaaaaa ctcattatcg
     6061 ccccacgaca ccctgaacgt tttaaagaag ttgaaaattt gcttttaaac aaaggtttag
     6121 aatttgaaaa atttagttct ttaaaagatg aaaataagaa attttctaaa aaaattttgc
     6181 ttttagatgc tttaggggag cttgtaaatt tttatgcaat ttctgatgtt gttgtgcttg
     6241 gaggttcttt catagaaggc ataggaggac ataatcctat agaagcggca tattttaaca
     6301 atgtattaat cagtgggaaa tttattcaca atcaaaaggt tttgtttgaa gaagtggaaa
     6361 atgtatattt ttgtgaaaaa ttaaaagatt taaatgataa aattcattat ttaaatttaa
     6421 aagctaaaat ttccaaaaaa gaaaatttag atcttatcat acaaactata caaaagggaa
     6481 ttgatgcaag aaaaagctta taaactctta gctttgcaag aaaaaatttc aaatcgtgaa
     6541 gctaaagatt tgattgataa gggttgtgtt ttttcacatg gaaaaaaagt tgtggttgct
     6601 agagctttga tgagcgataa ggcaagattt aatgtgataa aagctaaaaa tcctcaaatt
     6661 atttttgaag atgataagat tattgctatt aataaacctt atgcttatgt gagtgaagat
     6721 ttagagaaaa aatttaatgc caagctttta aatcgtttag acaaagaaac aagtggtgtg
     6781 attttgcttt gtaaagatga agattttaga aagctttgta tagaagaatt taaaaaacac
     6841 agggtttata aaagttatat tgcggtttta gatggggttt tggctgaaga ggttgaagtg
     6901 aatgaaccta tttttactat caaagtaaaa ggtggggcat taagtaaagt ttcaaaagat
     6961 ggtttaagtg ccttaagtat cattactcct atcatgatgc agtcaaaaaa aaccttagca
     7021 aaaatagtca ttcaaacagg tagaactcat caaatcagag tgcatgctaa atttataaaa
     7081 catggcgttg taggtgatga aaaatatgct aaaatttcaa gcgatagaat gtatttacat
     7141 agttatgaaa ttaaaatttt tgattattat tttaaggctg agctagataa tagttttgca
     7201 aaagttggct ttgagataaa aaatttagat ttttaaagcc atttaagaaa aaattttgta
     7261 taatgcaagg tttaatttaa aaattttata gaaaggtgat aaagtgtttg agttagtcag
     7321 cgaatctttt aaatcagcga ttaataaatt acgttttgtt gatgatgaaa aagcacttaa
     7381 gaacgcttta gaaaccttaa aaaaagctct tttaaaagca gatgttcatc ataaggtaac
     7441 taaagagctt ttgactttaa tagaagaaga tgtaaaacaa aatggcatag gtcaaaaaca
     7501 atttttaaat gccattaaaa taaatttaga aaatatttta agtgtcaatg gtaagaatca
     7561 aggttttgtt tttacttcta aacccccaac agtagttcta atggcaggtt tgcaaggagg
     7621 cggtaagact acaagcacta tcaaactcgc aaattattta aaattacgca ataaaaaagt
     7681 tttagttgca gcttgtgatt tgcagcgttt agcagcagtg gagcaactaa gacaactttg
     7741 tgaagctaat gaaattgaac ttttcttcat agaaaatgaa aaagatccta ttagggttgc
     7801 taaagaggct ttaaaaaagg ctgaaagttc tatggtggat gttttgcttg tggatactgc
     7861 tggacgtttg gctatagatg aagctttgat ggatgagtta agagcagtta aggatgtctt
     7921 aaatcctgat gagatttttt atgttgctga tgcaatgagt ggtcaagatg gggttaagac
     7981 cgctgctagt tttaatgaag ttttaggtat cagtggggta attttatcaa aatttgatgc
     8041 agatactaaa ggtggagtag ccttaggtat agcaaaacaa atcggtattc ctttaagatt
     8101 tattggtgtg ggtgaaaaag tagcagattt agaagttttt ataccagatc gtatagtaag
     8161 tcgtattatg ggtgagggtg atttggcaac tttagctgaa aaaactgctg cgattattga
     8221 tgaaaaagag gctaaaaaac tcaatcaaaa aattaaaaaa ggtgaattta attttaatga
     8281 ttttcttaat caaatggaaa gtattaaaaa attaggaagt atgaagtctt taatcggtat
     8341 gataccagga cttagcggaa tggcaaatgt ggtaaaagat atagatttgg ataattctaa
     8401 agaaatcata cgcattaaag caatgatttc ttcaatgact ccaaaagaaa gagaaaatcc
     8461 tgatttatta aataatgcta gaaagcgtcg tatagcagag ggagcaggtc tttctcaggt
     8521 agaagtcaat cgttttttaa aacaatttag caatgcagca aaacttgcaa aaagattttc
     8581 aggtaaaaaa ggaatggaaa gtttaacaca gatgatgagt caagctagaa ggcaatttta
     8641 aattttattt ataaatactt tttatagtat ctataaataa aatttttaat ttttaaggag
     8701 tataaatgac agttattaga cttacaagaa tgggtagaac caaaagacca ttttatcgta
     8761 ttgtagttac agacagtaga aaacgtcgtg atggtggttg gatagaaagt attgggtatt
     8821 ataatcctat ggtagaacct gaggtaatta aagttgatgc agagcgttta gcttattgga
     8881 aaagtgttgg tgcaaaactt agcgataaag ttgcttctat cactagcaaa taatcatggt
     8941 agagaatttt cttagagaat acgcaaaatt aattgcagat tatcctgaac agattgatac
     9001 tcaaaaaatt gaattaagtg aaaatttttt tgagattgtt ctttttgcac ataaggttga
     9061 tacaggtaag cttataggta aaaatggaaa aatgatcaat gctataaaaa ccgtaatctc
     9121 tgcttataag agcaaggatg caagttctta tagagtaacg gtaaaagcac ttgagtgaaa
     9181 aagattttgt tcaagttgca aaacttggta aaactgtggg tcttaagggt tatgtaaaat
     9241 tgcataacct gagcgacttt tcttctcaat ttaaaaaaga tgctactttt tttataaaaa
     9301 acaccaaaga aatgttaaag attaagcatt ataatgcaaa caattctact gttttatttg
     9361 aaaattatga agatatagaa aaggccaaag aattaactaa tcttattctt tttcagagta
     9421 tcgagaaaag cagacaaact tgtaaattaa aaaaagatga gtttttttat tttgatattt
     9481 tagagtgtga agtttttgaa gaagataaaa gattaggtaa agtggttgat atcttggaaa
     9541 ctggagcttc ttatttattt gaaattcaaa gtgatgaaaa atgggttgaa aaaaaatatc
     9601 ctaaaatatt ttttattcca tatttggata aatttgttaa aaatatagat atagaaaaac
     9661 gacagatttt ttgcacgcaa gatgcttttt taattttaga aaattcatga aatttagttt
     9721 cgtttctttg ttccctaatc ttatggaatt ttactttcaa gattctatac ttgcaagagc
     9781 aaaagaaaaa aaacttttca aacttaattt ttataatcca agagattttt ctaaaaattc
     9841 ttatcataaa gtcgatgatt ataaaatagg tggtggagct ggacttttga tgcaagctga
     9901 acctatgtat gaggtgctaa gaagtattca agaaaaaaaa gaaaatccct attttatttt
     9961 tttaaatcca agtggtaaaa cctttaatca aaaagacgcc aaacgcttaa gtaaaaaaga
    10021 acatatagtt tttgtatgtg ggcgctatga aggtatagat gaaagagtgc ttgaaatttt
    10081 tgcgaatgaa gtttttagta taggggattt tattttaact ggaggagaat tacctgcgct
    10141 tgtaatgtgt gatgcaattt taagaaatgt taacggggtt ttaggaaata tggaaagttt
    10201 ggaagaagaa agctttgaaa ataatttact cgaagcgcct gctttttcaa aaccttttat
    10261 ttttgagaaa aaaaataaaa aattttatac tccttcagag tttttaaagg gtaatcacgc
    10321 tagaattgca agtttaaaaa ctactttggc gtcttgcaaa acgaaatttt ttcgtccaga
    10381 tttattttta gagcatgaac gcaaaaaata agggattttt tatgaaaaat aaatatatag
    10441 aacaatttga agcaaaacaa attgaaggta aaaatgttcc agattttcgt gctggtgata
    10501 ctttaaagct tgcaattcgc atcaaagaag gagataaaac aagaatccaa aattttgagg
    10561 gtatttgtat tgctagaaga ggtaatggcg taagtgaaac ttttatcgtg cgtaaaattg
    10621 gcgctaataa tgttggcgtt gagagaattt ttcctattta tagtgaaagt ttagaaagta
    10681 ttactgtttt gcgtcgtggt cgtgtacgcc gtgcaagatt attctactta agagatagac
    10741 gcggtaaagc agcgcgtatt aaagagctta aaaaataatt tataattatt tttattataa
    10801 gtctaacaat taaataatta taattaattt ataattatta tttatttgat
//
LOCUS       DAQSLY010000050        10274 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.050, whole genome shotgun sequence.
ACCESSION   DAQSLY010000050 DAQSLY010000000
VERSION     DAQSLY010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.050"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..723
                     /locus_tag="R2H98_001018"
     CDS             <1..723
                     /locus_tag="R2H98_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEE9023910.1"
                     /translation="GLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKI
                     NNGQNSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLK
                     IQDFSELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVF
                     TPFFAPFLMLIMYYFFPVIARFFNLAIVAFVAFVATLMIWGVLFLLTRLSENSVIASE
                     IGIVVPIIILGCLSAYMYYKHR"
     gene            767..1975
                     /gene="lysA"
                     /locus_tag="R2H98_001019"
     CDS             767..1975
                     /gene="lysA"
                     /locus_tag="R2H98_001019"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEE9023911.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYKKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPGTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            1977..2744
                     /locus_tag="R2H98_001020"
     CDS             1977..2744
                     /locus_tag="R2H98_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEE9023912.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLRPCKVAAFGADEFIKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            2732..3805
                     /gene="pheA"
                     /locus_tag="R2H98_001021"
     CDS             2732..3805
                     /gene="pheA"
                     /locus_tag="R2H98_001021"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEE9023913.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            3795..4889
                     /locus_tag="R2H98_001022"
     CDS             3795..4889
                     /locus_tag="R2H98_001022"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEE9023914.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGAP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLKLCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            4941..6623
                     /gene="fliF"
                     /locus_tag="R2H98_001023"
     CDS             4941..6623
                     /gene="fliF"
                     /locus_tag="R2H98_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEE9023915.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            6623..7651
                     /gene="fliG"
                     /locus_tag="R2H98_001024"
     CDS             6623..7651
                     /gene="fliG"
                     /locus_tag="R2H98_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEE9023916.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            7659..8489
                     /gene="fliH"
                     /locus_tag="R2H98_001025"
     CDS             7659..8489
                     /gene="fliH"
                     /locus_tag="R2H98_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEE9023917.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            8482..>10274
                     /locus_tag="R2H98_001026"
     CDS             8482..>10274
                     /locus_tag="R2H98_001026"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEE9023918.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHTQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEK"
BASE COUNT         3656 a         1276 c         2024 g         3318 t
ORIGIN      
        1 ggattgaatt ttacttcttt tgcttatgca aatgattata agagaaatat tttgaaaaat
       61 ggcactatta tgaatcaaag tggagaagtg tttttgaaat ttaacaataa ttttgtttat
      121 atttcaaaga taaacaatgg acaaaatagt gctcaaaata taaaaatttt taatattaat
      181 gatttaaatt taagctcttt tgtaagtgct aaaaatgccc attttgaagg tgaaagctgg
      241 attttgcgag atggtaatat tacattatta cctaaaaatt atgaacttgc taatgatggt
      301 ttaaagatac aagatttctc cgagcttaaa tcacttgaag gttttaaacc aaagattata
      361 gaaggggttg ctagtaatag tgattattca atatctgatg cacttgaaag ttttgagctt
      421 tttaaggcgc aaaatgtcaa tacagatact cttaaaatca atctttataa atttgttttt
      481 actccttttt ttgcaccatt tttaatgctt attatgtatt atttttttcc tgtaatagca
      541 agatttttta atcttgctat tgtagctttt gtagcttttg tagcgacttt gatgatttgg
      601 ggagtcttgt ttttgcttac tagattaagc gaaaatagtg tgattgcaag tgaaattggc
      661 attgtagtgc ctattataat tttgggttgt ttaagtgctt atatgtatta taagcatcga
      721 taaattaagc tttgtgtagt aaaattataa aaattaaagg ttaaatatgg attataaaca
      781 attaaaacaa gaatttaata ccccttttta tatttacaat tttgatttca taaaagagcg
      841 ttttttaaat ctcaaagagg cttttaaggc tagaaaatct caaatttttt acgctgtaaa
      901 agccaattca aatttaagtt tgttgcaaat gcttgcaaat ttagatagtg gatttgattg
      961 tgtgagtata ggcgaggtaa agcgtgcctt aaaagcagga gcaaaagctt ataagattat
     1021 ttttagtgga gtaggaaaaa ccaaagaaga gttaagacaa gctttagaat atgatatttt
     1081 atatattaac cttgaaagcg aagctgaaat gatgctttta gaaagtgtgg ctaaagaact
     1141 taatctaaag gcaagaatca gtattcgtgt taatccaaat gttgatgcaa aaactcatcc
     1201 ttatatttct acaggattaa atgaaaataa atttggtgtc gaaattgata tagcaagaaa
     1261 aatgtatctt tatgcaaaaa attcatcttt tttagagccc gttggagtgc attttcatat
     1321 aggttcgcaa cttttagata tttctcccat tcatgaagca gcaggcatcg ttgcaaaact
     1381 tgtaagagag ttaaaagcct tgcaaatcga tcttaaattt tttgatatag gcggtggttt
     1441 gggtgtggct tataaaaaag atgagtgtga atctgatctt tatgattatg cacaaggtat
     1501 attagcacaa cttcatgggc ttgatttaac tataggaatg gagcccggaa ggtatctagt
     1561 tgctaaaagt ggagaatttg tttgttcagt gctttatgaa aaacaaaata aaaccaagcg
     1621 ttttgttgta gtagatggag cgatgaatga tcttatacgc ccaagtttat acgaggctta
     1681 tcatgaaata atcttacctt ataatcaagg cgaagagagt ttatgtgatg ttgtaggtgg
     1741 aatttgtgag agtggggact tttttgctaa agcaaggtct ttgcctggca ctcaaagtgg
     1801 tgatataatg gttattaaaa atactggagc ttatggtttt agcatgagta gtaattacaa
     1861 tactcgtaat aaagtttgcg aattagccct tgaagaagga caggtaagat tgatccgtca
     1921 aagagaaaat tttgaagatc aaatcgcttt agaagagaaa tttttaaagg cttaaaatgt
     1981 tttttttaga tgttcaaggg actttaattt ctgatcatga taaatcttta atccatggtg
     2041 ctaaagaact gatcgatttt ttaaatgcaa aaaatcttcc ttatcttatc atcactaaca
     2101 atacaaaaaa acttgatttt ttagaaaaat tacagcaaaa aggattggct ataaaagaaa
     2161 atgcttatat tgatcctttc agcgttttaa aacacctttt aagaccttgt aaagttgcgg
     2221 cttttggtgc agatgagttt ataaaaagtc ttgaaaatct tggttttgag ctcgattttg
     2281 taaatcctag tgctgtgctt gtggctagtt atgatgattt taaatttaaa gattttgcca
     2341 ctatgataga attggctaga agagaagtta gatttatagc tatgcacgaa actagtattt
     2401 ataaaaaaga tggtaggcct tatcctggtg taggtagcat tatggctatg cttaaaaatg
     2461 ctattgattt tgaatacgag gttgtgggta agcctagcat tgctttttat aaagaagctt
     2521 taaatttaat aagaagacaa aattcaaaaa tcgattttga agatattaaa atcattagtg
     2581 atgattttag gggtgacttg cttaaggcaa aagaacttgg catgaaaacc ttgctagttt
     2641 taagcggcaa gataagcgac acaaaagggc ttgatacgga tttgcttgat ggagtttatc
     2701 ctagtgtttt tgagttttta aaggatctaa aatgccaaat ttagaagaat ttagaaataa
     2761 aatcgatgcg gttgatgata aaattttaga tcttttaaat gaaagaatga cttatgttaa
     2821 aagtataggt gagcttaagc aaagtagtgg gggaagtatt tatcgtcctg agcgtgaaag
     2881 agccattatc aatcgtttaa aaaatgcaaa tttaggactt ttagatcaaa atgccataga
     2941 ggcaatttat caagaaattt ttgcagtttc aagaaattta gaaatgcctc aaactatagc
     3001 ttatttaggg cctgaaggaa cttatacaca tcaagcagca agaagtcgtt ttggtgcgat
     3061 gagtcgttat atagccttgg ctaatatcga agatgttttt aaagagttaa gcaacaaaga
     3121 agcaaaatac ggtgttgtac ctatagaaaa taataccgaa ggtgcagtgg gcattacttt
     3181 agattgtcta ggtaagtata atgagcttaa aatttttggc gaaatttata tggatattca
     3241 tcattctttt gtaggaatta atgaaaattt aaaagaaatc aaacgcattt attcgcatcc
     3301 gcaaggttat aatcaatgtc gtaaattttt agaaagtcat gaacttagtg ctatagaatt
     3361 tgttccttca aaatctacag ctaatgcagc ttacctagct tcgcaagata aatatgcggc
     3421 agcaatttgt tctagaatag cggctaagct ttataatgtg cctgtacttt ttgataaaat
     3481 agaagataat gcagccaata aaacaagatt tttaatttta agcgatatta aaaatcctaa
     3541 aatgccaaat tgtaaaactt ctattttagc acacacagca cataaacctg ggggacttag
     3601 ctttttatta gagcagttta aaaaagaaaa tatcaatctt actaagcttg aatctcgccc
     3661 tgtaaaatca aaagaatttt tacacagttt ttatatagat tttgaagggc atattgatga
     3721 tgaaaatgta aaaaaagcct taaaagatat acaagagatt gtttggcttg gatcttattt
     3781 atcaggagaa aaagatgaaa tttaatgaat ttttaaataa tttaagcaat tatgaacccg
     3841 gcaaagatat agaagttatt gctaaagaat atggcgttaa agaagtgata aaattagcaa
     3901 gcaatgaaaa tccttttggc gcgccaccaa aagctataga atgtttaaga caaaatgcaa
     3961 acaaagccca tctttaccct gatgatagta tgatagaact taaaagcaca ttggctcaaa
     4021 aatacaaagt tcaaaatgaa aatattatca tcggtgcagg cagtgatcaa gtgattgaat
     4081 ttgctataca tgctaagtta aattctaaaa atgctttttt gcaagctgga gttacctttg
     4141 ctatgtatga aatttatgcc aaacaatgtg gtgcaaagtg ttataaaact caaagtatta
     4201 ctcataattt agatgagttt aaaaaacttt atgaaacgca caaagatgaa attaaactta
     4261 tttttttatg cttaccaaac aatcctttag gcgagtgttt ggatgcaagt gaggcgaccg
     4321 agtttattaa aggtgtaaat gaggattgtt tagttgtgat tgatgcagct tataatgaat
     4381 ttgcaagttt taaagatagc aaaaaacatt taaaactttg cgaattgatt aaagaatttg
     4441 acaatgtact ttatttagga actttttcta agctttatgg attaggaggt ttacgcattg
     4501 gttatggtat agctaatgct aatattatta gtgcatttta caagcttcgt gcgcctttta
     4561 atgtgagtaa tcttgcttta aaagcagcag ttgcagcaat aaatgatgat gaatttgcta
     4621 aaaaaacttt agagaataat ttttctcaaa tggagcttta taaagaattt gctaaaaaac
     4681 ataatatcaa aattatcgat agttatacaa atttcatcac ttattttttt gatgaaaaaa
     4741 atagtacaga tttgtctgaa aaattgctta aaaagggtat aataataaga aatttaaaaa
     4801 gctatggttt aaatgctata cgcattacta taggaacatc ttatgaaaat gaaaaatttt
     4861 ttacagaatt tgataagatt ttaagataga taaatcaaat aaaaatatgt aaaattcgct
     4921 aaactaaggg atgagaatta atggatttta aaaatatgct tcatcaaatt gggcaacttt
     4981 atcaaaattt aactcgcaag cagcgtatag tgattgctgc atctattata gttgtggttg
     5041 ggtttttggt ttttttagct ttatttcgtg gaagtggtag taatgcaaat aatggatatg
     5101 cagttttagt tgaaaatgta agcccaagtt cttctgctgc aattgtagct aaacttgaac
     5161 aaaataatat tccctataaa ttagaaagtg aaaataaaat tttagttcca caagatcagg
     5221 tttatcgtca aagaatgttt attgcaagcg aaggtcttat aaaagatagt cgcgtgggtt
     5281 ttgaagcttt tgatactcaa gcttttggag ctacaaatga agagcaaaag gtaaaatacc
     5341 aaagagccat agaaggcgaa cttgcaagaa ctattgagac tttagaacct attcgtagcg
     5401 ctgttgtaca catagcattt cctaaagata gtgtttttac cgaaaggcaa attccgccta
     5461 cagcttcagt tgttgttaat gttcgcgaag gtttaaagct tactagaaaa caaattgatg
     5521 gtataaaaaa tattgtttca gcggcagttc caaaacttac taaagaaaat gttaagatta
     5581 gtgatcaaag tggtgtgcct ttagatgagc aagaagcata tgaagatgac ttggttcgtg
     5641 cgcaaattaa atttaaaagt gatcaagaaa aagctttaga agataagatt atagaaaatt
     5701 tagctccttt tgcaggtggt atggataaag taaaagtgag tgtaaatata gattttgatt
     5761 tttccaagca agaatctcaa agtgaaattt atgatccaaa tcctatagtg cgtagtgagc
     5821 aaactttaaa cgaggaaaga acaggtagaa aagatccaga aattcagggt gttccaggtg
     5881 ctgtttctaa tataggtcct gttgaaggac ttgacaataa aggtcaaatt gacacttata
     5941 aaaaaaatca agttactaca aacaatgaac tttctaaaac tatcacaaat acaaaaaaac
     6001 aatttgcaac agttttacgc acttcggcag ctgtcactat agatggaaaa tatcaagatg
     6061 tggttgatga aaatggggat gtgaaaagcg aatatgttcc attgactaaa gaagagcttg
     6121 caagtgttga gagtatagtt aaaaatacta ttaattttag cgctactaga ggtgatagcg
     6181 ttgtggtgca aaatttacca tttcatcgtg agtcgattag agttgagagt aaagttaaaa
     6241 ctttttacaa tcgttttgtt gagccattta ttccgccggt taaatacttt attgcagcga
     6301 ttttactttt tattttttac aaaaaagtta ttgctccatt tactcaaaaa atgcttgaag
     6361 atgtcgcagc acaagaggag atgcagcaag gtccaaatgc tgttttagat gatgctgaag
     6421 atgctttaga gaaatttaat gcagcaagga aaaaagttga agaacaactt ggttttgggg
     6481 ataattttaa tgaagattct atccagtatg aggttttgct tgaaaaattg cgtggtttgg
     6541 taagtgataa aggtgaggaa attgcagcac ttttgcaaaa cttaattcaa aatgatagcg
     6601 aatttggcga aaaggatatg tgatgataaa gctaagtgaa gaacaaaaaa tggtctatga
     6661 tgatttatcg atgcctgaga aggtagcgat atttcttata caacttggcg aagatgcaac
     6721 aacttctgtg ttttcacata tggaaattga tgtaattaca gaaatttcac gttatattgc
     6781 tatggctaaa aatgttgata gatctgtagc tactgcggtt ttagaagaat tttacactct
     6841 gcttcaatca aatcaatata ttaaaagtgg tggtttggaa tatgctaaag aaatactttt
     6901 tcgtactttt gggccagaga ttgcaaataa aattcttgaa aaactcacta aaagtatgga
     6961 gaataatcaa aattttgctt atttggcgca aattaaacca cagcaacttg cagactttat
     7021 taccaaagag cacccacaaa ccatcgctct tattttggca cacatggatt ctattcatgc
     7081 ggcagaaact ttagagtatt ttagtgatga attaagggct gaggtggtta taagaatggc
     7141 aaatcttggc gatatttctc caagtattat taaaagagtt tctgcagtgt tagaaagcaa
     7201 gcttgaaagt cttacctctt ataaggttga agtgggcggc ccaagagcgg tagcagaagt
     7261 gcttaatcgc ttgggtcaaa aagcaagcaa atcaaccatt acttatattg aacaaagtga
     7321 tgaacgctta gcagagacta ttaaagagct tatgtttact ttcgatgata tacaaaaact
     7381 tagcactcag gctataagag aaattttaaa agtagccgat aagcgtgatt taatgatagg
     7441 tttaaaaggt gcaagtgaag agttaaagca aaaattctta gccaatatgt ctacgcgtgc
     7501 aagcgaagct tttcttgaag aaatgggttt tttgggtgct gtgcgtgtta aagatgttga
     7561 agatgcacaa agaaaggttg ttgaagtggt gcaaaaactt gcagaacaag gtcttgttca
     7621 aacaggcgat gcggatgaaa tgatagagta ggtgagagat ggttaatcgt agcaatgtaa
     7681 tttctggtgg ggcttctgat cagcatgttg ttgaaggata tcgttttaaa gttatttcag
     7741 aatttgataa tcatacaggt gaaaaaaaac atactcaaac tccagatgaa gaaaatacta
     7801 atatatcttt aaatgacgaa aaaccagtcg aagaaaatca agtcattgcc tctacacaag
     7861 ctgttatgga aactcaaatt ccaacatttc aaccaagctt tgttgaagat ttacttaaaa
     7921 aaacagatga aatgtcaagc aatattatta aacttcaaat gcaaatagaa agccaagaga
     7981 atgaatttaa taaccgctta aattcagaac ttgaaaatgc taaagaaaaa tttaccaaag
     8041 agggttatga gaaagcaaaa gaagaatttc aaaaggaatt gagtgatttt aaagataagt
     8101 atttaaaaag tatagccaaa cttgataatg cttgcgaaaa tcttgaaaat ttcatagaaa
     8161 aaaatgagaa agaattagca gatactgcta tagatatcgc taaagaagta atcttaaaag
     8221 aacttgaact aaattcaagt aagatagctt atgctttggc taaagattta atcggcgagc
     8281 ttaagggtgc tagtgcaatt gagcttaagg ttaatgcaga ggattatgag tatttaaaag
     8341 agcaatttga tcagaatgct catattaaaa taagtcttga tgatgcaatt agcaaaggaa
     8401 gtgttgttat tataagtgac gcaggcaata tagaatccaa tcttaactct cgtctaacta
     8461 aaattaaaaa aatggtgaat aatgagtaaa aaatttgccc atactcaaga agagttagaa
     8521 aagctaagtt taaaagaatt agaaaattta gcagcatcta tgcgtgaaaa aatcatacaa
     8581 gttgtgagta aaaatggtgg gcatttaagt tcaaatttgg gtgctgtaga acttagtata
     8641 gcaatgcatt tggtttttga tgcaaaaaaa gatcctttta tttttgatgt gtcgcatcag
     8701 tcttatacac acaagctttt aagcggaaaa gaagaaatat ttgatacttt aagacaaatc
     8761 aatggtttaa gtggttatac aaaacctagc gagggagatt attttgtagc agggcattct
     8821 agcacctcta tttctttggc agtaggtgct tgtaaggcca ttgctttaaa aggtgaaaag
     8881 cgtattcctg ttgctttgat tggagatggt gctttaagtg cgggtatggc ctatgaggct
     8941 ttaaatgaat tgggtgattc taaatttcct tgcgtaatac ttttaaatga taatgaaatg
     9001 agtatttcaa aaccaattgg agcaatttca aagtatcttt ctcaagctat ggcaacgcag
     9061 ttttatcaaa gttttaaaaa gcgtattgct aaaatgttgg atatattgcc tgatagtgct
     9121 acttatatgg ccaagcgttt tgaagagagt tttaaactta ttactcctgg gcttttgttt
     9181 gaagaattag ggcttgaata tatagggcct attgatggac ataatttagg tgaaattatt
     9241 tctgcattaa aacaagcaaa agctatgcaa aagccttgtg tgatacatac tcaaaccata
     9301 aagggtaaag gctatgcttt agccgaagga aaacatgcta aatggcacgg ggtgggagct
     9361 tttgatatag atagtggaga gagtgttaaa aaaagtgata ctaaaaaatc tgctactgaa
     9421 attttttcta agaatttgct tgatttagcc tcaaaatatg aaaatattgt tggggttacg
     9481 gcggctatgc caagtggaac aggtcttgat aagcttatag aaaaatatcc aaaccgtttt
     9541 tgggatgtgg ctattgcaga acagcatgca gtaacttcta tggccgctat ggcaaaagaa
     9601 ggatttaaac cttttattgc aatatatagc acttttttgc agcgtgctta tgatcaagtg
     9661 atccatgatt gtgcgattat gaatttaaat gtggtttttg ctatggatag ggcagggata
     9721 gtaggcgaag atggggagac gcatcaaggt gtttttgatc ttagtttttt agctcctttg
     9781 ccaaatttca ctcttttagc tccaagagat gaacaaatga tgcaaaatat aatggagtat
     9841 gcttatttac atcaaggacc tattgctttt cgttatccta gagggagttt tattttggat
     9901 aaagaattta atccttgtga gataaaactt ggtaaggcgc aatggcttgt aaaaaatagt
     9961 agtgaaattg cttttttagg ttatggacaa ggtgtggcaa aagcgtggca agtcttaaga
    10021 gccttgcaag aaatgaataa taatgctaat ttgattgatt taatttttgc taaaccttta
    10081 gatgaagagc ttttgtgtga gcttgctaaa aaaagtaaaa tttggtttat ttttagtgaa
    10141 aatgttaaaa ttggcggtat agaaagttta attaataatt ttttacaaaa atatgatttg
    10201 catgtaaaag ttgttagctt tgaatatgaa gacaaattta ttgaacatgg aaaaacaagt
    10261 gaggtggaaa aaaa
//
LOCUS       DAQSLY010000051        10274 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.051, whole genome shotgun sequence.
ACCESSION   DAQSLY010000051 DAQSLY010000000
VERSION     DAQSLY010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10274)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10274)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10274
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.051"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            20..1231
                     /locus_tag="R2H98_001027"
     CDS             20..1231
                     /locus_tag="R2H98_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEE9023919.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHNVSNSFKLNEELALNHAKLRELSINLENTAKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            1234..1914
                     /locus_tag="R2H98_001028"
     CDS             1234..1914
                     /locus_tag="R2H98_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEE9023920.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            2040..3506
                     /gene="ccoN"
                     /locus_tag="R2H98_001029"
     CDS             2040..3506
                     /gene="ccoN"
                     /locus_tag="R2H98_001029"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEE9023921.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKF
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3519..4184
                     /gene="ccoO"
                     /locus_tag="R2H98_001030"
     CDS             3519..4184
                     /gene="ccoO"
                     /locus_tag="R2H98_001030"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEE9023922.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            4189..4452
                     /locus_tag="R2H98_001031"
     CDS             4189..4452
                     /locus_tag="R2H98_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEE9023923.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4452..5315
                     /locus_tag="R2H98_001032"
     CDS             4452..5315
                     /locus_tag="R2H98_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEE9023924.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            5312..5533
                     /locus_tag="R2H98_001033"
     CDS             5312..5533
                     /locus_tag="R2H98_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEE9023925.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5530..5631
                     /locus_tag="R2H98_001034"
     CDS             5530..5631
                     /locus_tag="R2H98_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023926.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            5628..6230
                     /locus_tag="R2H98_001035"
     CDS             5628..6230
                     /locus_tag="R2H98_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023927.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            6217..6738
                     /locus_tag="R2H98_001036"
     CDS             6217..6738
                     /locus_tag="R2H98_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEE9023928.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            6735..9101
                     /locus_tag="R2H98_001037"
     CDS             6735..9101
                     /locus_tag="R2H98_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEE9023929.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            9098..>10274
                     /locus_tag="R2H98_001038"
     CDS             9098..>10274
                     /locus_tag="R2H98_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEE9023930.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLITELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     "
BASE COUNT         3676 a         1134 c         1861 g         3603 t
ORIGIN      
        1 taggttttaa ggcttttcaa tgaaagattt ttttaaagat cagtttttta aagctcttga
       61 aaaaaataca attttttcaa gagctgatgt tcaaggaaat ttaatttttg tcagtgataa
      121 actttgtcaa ataagtggat atagtaaaaa agagcttata ggaaaaaaac attcaatatt
      181 taaacatcca gatgttgagg aatgttatat tgaagaactt ttaaaaaaac tttcatataa
      241 aaaaccttat caagttattt ttaaaaatat tgataaatta ggcaaaactt tctatcttga
      301 aactttatta atccccatat tggataaaaa taatgaatta atagaaatag tagcattctc
      361 tcataatgtt agtaattctt ttaagcttaa tgaagagctt gctctaaatc acgctaaatt
      421 aagagaatta agtattaatc ttgaaaatac agctaaaaat caccaacaag aatttataca
      481 gttaggtaaa aaatttgaga aaaaaatgca aattgccttg gaaaaaaatg aaaaagatat
      541 taaaatagca tatgaagaga ttttgaaatc ttcattagaa caaatgatta gcgatatagc
      601 acatcaatgg agacaaccgt taaatgagct cggtattgcc atgtttcaaa tgaagcaaaa
      661 tcttaaagat gaaaaaggat ttgctgaaat ttactcacaa tcaaaagata tgattaaaaa
      721 tatgtcagaa acaattgatg tgtttagaac tttgtttaac aaaggagtag agcagtgtgt
      781 atttataaaa gagactttaa ataaagcctt ggaaattgct tttgaaacta tagaaaaaaa
      841 tcatgtaaat attaatattg tttcgaaaag tgattatgaa gttttggcat atgagaatgg
      901 tttaataaga gtttttctta atttgatttt aaattcaata gaagcattta aaaacaaaaa
      961 aaggaaaatc ataacaataa atttttcaaa atttggaaaa aattatctga aaattacaat
     1021 aaaagataat gctggtggga ttgataaaga aaatttagat aaaatttttc aaccttattt
     1081 tacaacaaaa catcctagtc aaggtatagg agtaggactt tatataagta gacaaattat
     1141 cgaaagtttc caaggaaaaa taaaagttaa aaatggaaaa gacggggctt gttttgagat
     1201 atttttaaaa ctaaaagaga gggtagagta gaaatgtcac aagaatgtaa agaattgata
     1261 atattagtag ttgaagatga ggttaaggct agagaatcaa tgattaatat attaagcgaa
     1321 cgctttagta aagtaatcgg agctcaaaat ggagatgagg ggcttaaaaa atttaaaaaa
     1381 tttaagccag atttagttat cacagatatt gctatgccta ttatggatgg actggatatg
     1441 gcaagagaga ttaaagaaat ttcagatgat gtcccaattg ttgttcttag tgcgtattca
     1501 gagaaagaga gacttttgcg ttctattgat attggtatag ataaatattt gattaaacct
     1561 gttgatatag aagagttgtt taaagtttta gattatctga taggtgaaaa aattgaagca
     1621 aatatgcttg taaaaatttc cgaagaatat caatttaaca aaactaaacg aactttaatt
     1681 tacagtggtg gagaaattgt tttaactaaa aaagaattgg cttttatttc tttgctttta
     1741 aagcaacctg gagctttggt tttgcatgaa gatattaaga aaaatgtttg gataggtgaa
     1801 catgtgagcg atactgctgt tagaactttt ataaaaagag taagagataa agtgggtgaa
     1861 gattttataa aaaatgtgcc aagtttaggt tataagataa atatcaataa ataagactga
     1921 tttagcctta aaatataaaa cataacaaat gattaacaaa attatcattt ttaagaaaaa
     1981 atgtataatt aatattctat aatattctct tgttatcaaa aattttaagg agaaagtcga
     2041 tgcatccagg taatgtatta aattacgact atacggttgc aagatatttt atgtttgcga
     2101 ccatattgtt tggcattgtt ggtatggcta taggaactct tatagctttt caaatggcat
     2161 atcctaattt aaattattta gcaggagaat atgccacttt ttcaagactt agaccacttc
     2221 atacttcagg tgtgattttt ggttttatgc tttcagggat ttgggcaact tggtattata
     2281 taggtcagcg tgttcttaaa gtgagtatgg ctgagtcaag atttttaatg gctgttggta
     2341 agtttcattt ttggctttat atgcttacta tggttttagc tgttatatct ttgtttatgg
     2401 gtgtgactac atctaaagaa tatgcagagc ttgagtggcc tttagatatt cttgttgttc
     2461 ttgtttgggt tttatggggt gtaagtattt ttggacttat tggaattcgc cgtgaaaaaa
     2521 ccctttatat ttctctatgg tattatatag ctacattttt aggtatagct atgctttatc
     2581 tttttaacaa catggaagta ccaacttatt ttgttactgg aatgggtaaa tggtggcata
     2641 gtgtatcaat gtatgcagga acaaatgatg ctttagtaca atggtggtat ggacataatg
     2701 ctgtggcatt tgtatttact gtgggtatta ttgctcaaat ttattacttc ttgccaaaag
     2761 aaagtggtca gccgattttc tcttataaac tctctttatt tgcattttgg ggcttaatgt
     2821 ttgtttatct ttgggcaggt ggtcaccatt tgatttattc aactgtacct gattggatgc
     2881 aaactatggg ttcggttttc tctgtagtat tgattttacc ttcttggggt tcagcgatta
     2941 atatcttgct tactatgaaa ggtgagtgga gtcagcttcg cgagagtccg ttgattaaat
     3001 ttatgatttt ggcatcaact ttctatatgt tctcaacact tgaagggcca attctttcaa
     3061 ttaaatctgt taatgcttta gcacacttta cagattggat tccaggacat gttcatgatg
     3121 gaacattagg ttgggtagga tttatgacta tggccgcgct ttatcatatg actcctagag
     3181 ttttcaaaag agagctttat agcaaatctt taatggaagc tcaattttgg atccaaacca
     3241 caggtatagt tctttatttt gcttcaatgt ggattgcggg tattactcaa ggtatgatgt
     3301 ggagagcgac agatgagtat ggtaacttgc tttatagctt tattgatact gttgtggcta
     3361 ttgttcctta ttattggatt agagcgattg gtggattgtt gtatcttatc ggtttcttta
     3421 tgtttactta taatatttac aaaacaattg cttgtggaag agtgcttgat aaagaaccaa
     3481 aaagcgcttc gcctatggca gcataaaaag gagagaaaat gtttagttgg ttagaaaaaa
     3541 atccattctt ttttgctgta gctgtttttg tagtgattgc ttatgcaggc atagttgaag
     3601 ttttaccaaa ttttgcagaa aatgcaagac caattgaagg taaaaaacct tatacggttt
     3661 tacaacttgc agggcgtgca gtatatatta aagatagttg taatgcttgt cattcacagc
     3721 ttattcgtcc atttaaatca gaaacagatc gttatggtat gtattctgta agtggtgaat
     3781 ttgcttatga tagacctttt ctttggggct caaaaagaac aggacctgat cttgctcgtg
     3841 taggaaatta tagaacggct gattggcatg aaaatcatat gtgggatcct acttctgttg
     3901 ttccagattc tattatgcct tcatataagc atatgtttaa aaataatgca gatattgaaa
     3961 ctgcttatgc tgaggcttta actgtgaaaa aagttttcaa tgttccttat gatgcagaaa
     4021 atggaacaaa acttggttct tgggaggatg cacaagctga agtaaaagct gaagctcagg
     4081 ctatagttga tcaaatgaaa aatcaagaag taaaagatgc ttttgctaaa ggtgaaatca
     4141 aagaaatagt tgctttgatc gcttatttaa atagtttaaa gtaagatgat ggaacattta
     4201 tcaatagttt ttgatgtgat taaaaattta atcacatttg atttagcaac agttcaaaaa
     4261 catgagtggg agattttcca aggttatggt ttttttgcac tcgtgatgtt tttgtcaata
     4321 gtattatatg cgtatttgta tcatttatat agaacagaaa aaaaaggcga gagaaattat
     4381 gaaaattatg caaaccttgc cttaaaagat gatattgatg atagtgtatt agaaagtaaa
     4441 aggagtgctt aatgcaatgg ttaaatttag aagataatgt taatctctta tctttaattg
     4501 gagctattct tatcatttta atcacactgg ttattgtggg tagaatgttt aagcaaatga
     4561 aagaaaaaaa aggcgagtca gagcttagtg aacatagttg ggatggaata ggagagtata
     4621 aaaatgctgt tcctactggt tgggctgtgg tatttttcct gactattgtt tgggctattt
     4681 ggtattttct atggggatat cctttaaatt ctttttcaag tataggtcaa tataatgaag
     4741 aagtagcaac tcataataca aaatttgaag aaaaatttaa aaatttatct cctgaagata
     4801 aaatagcaat gggtcaaaat atctttttag ttcagtgttc ggcttgtcat ggaattacag
     4861 gagatggtat caatggtaaa gctcaaaatt taaatatttg gggtagtgaa gaaggtataa
     4921 tcaatgtaat taaacatggt tcaaaaggta tgaattttcc aggtggagaa atgcttggtg
     4981 ctgctgattt aggtgtagca gaagaagata tccctgctat tgctgcttat gtagcaaaag
     5041 atctttcagc tattaagaaa actgcaaatg aaaatttagt agcaaaaggt aaagaagctt
     5101 atgcaacttg tgcagcatgc catggagaag atggaaaagg tcaagatgga atgttcccag
     5161 atcttacaaa atacggttct gcagcttttg tagtagatgt tttacatagt ggtaaggctg
     5221 gttttatagg aacaatgccg agttttccaa cacttaatga tattcaaaaa gaagctgttg
     5281 gcgagtatgt aatttctctt tcaaggggtg aatgatggaa aataataata gatgcgtgtt
     5341 ttctctttca ggtgttacag gtatgttaat tgctacggtt ttgttgcttg ctatcttagc
     5401 agttttaact atttggggtc ttaaagctca gcaagaagtg atgcaaaagc catatagtct
     5461 taaagatgta caaagtgtaa agatgtttgg ttcaaaagaa caagatcata gaagtataaa
     5521 ggaagcacaa tgagtaaggc tttggaatat ttaattgtta ttggtttagt tgttgctgct
     5581 gcaatcaccg cttggtcggt tttgaccgta aatcatcttc atataggatg aaaaaaatat
     5641 tacaagatgg ctttttttta gctatcttct tctttgtttt attgccttct agggtttttg
     5701 ctcttgatgc tgtgcttttt aatgaaaata ttttaagtca aaaagtaagt aacgagatta
     5761 atcttatagg aaaagagctt taccaaaaaa gtaatatttt tatcggcgtt atggttggtg
     5821 ataaaactga aattgaaact ttattaaata aacaaaaaga acttcctcaa tcttatatat
     5881 tgcttctttt gtcaaaaaat tctcacaaag ttgatatagt gggctcaaaa ggtgctttag
     5941 ctttgattga taaagaagct gtgcttagtc cttatcctgg aacaggatct attttgccga
     6001 tattagctac aaataaaggt gatatttata atgctgctat acttaatggt tatgcagata
     6061 ttgtagatcg tgtggcaaaa tccttgggat tacaattaga acattctata ggtaatgcaa
     6121 atcgtgatac tatcaatatt ttaagaatac ttatctatgg atttatttgc tttgcattgt
     6181 tatactatgc acaaagaaga ataaagagga aaaaaaatgt tagaaactaa aaaaagtttt
     6241 tggccttatg gtattttgct ttcacttttg gctataatta ttgcttgtat tgtaacgatt
     6301 tttatagcaa gtcaccatcc tgtgtatgag gatgattttt attttgactc ttatcaaaat
     6361 gttgaaaata attacaatca aatacaaaaa caacaagtaa attttgataa attttttaaa
     6421 gtaaattttc aaaatgataa aatcactttt ataggtaaaa gaaaaattcc tagttatgaa
     6481 gtggatcaaa attcctatgt tgcaaatttt aaaatttctg cattgcaaaa tataaattct
     6541 aatgatttaa aagttcaagt tcttcttaca agaccattca ctaaaaattt tgatcaaaag
     6601 ttagaaggac aagttaaaaa tggaatttta agtatcgctt tacctaaatt agataaaggt
     6661 agatgggagc ttaagctaaa gttttatgca aatcaagaaa cagtgggttt ttttagctac
     6721 gaattaaatg ctcaatgaaa ttaagaattt ttagctcttc aaggcaaatt agagaatatt
     6781 ataatcaaaa aaaacagcaa aatgctttat tagatagtgc tattcatata ggtgaatttt
     6841 tagataaagt ttgtttgagc aattttcata aagcaagttc ttatgaaagt ttgcttttaa
     6901 tgcaagaagc ttgtctaaaa agtaaggatt tagaaaaaaa actaggaatt tcggtagaat
     6961 tttttgcttt tttgaaaaat aacgaatatc ttttttcttt ttttaaagaa ctgagtttgg
     7021 aaaaaaaaag catagaagat cttaaaaaca atgattatta tgccacctat aatgaacatt
     7081 tggaaatttt agatgaggta tataagaatt atcttgcttt gcttgaaaag aattcttttt
     7141 atgatgatct ttctttacct aaaaattaca ctcttaataa agatttttta gatgagtatg
     7201 aagctatagt ttatgatttg caaggttttt taagtaaatt tgaagaaaat ttattaagtg
     7261 aaatttctca gattaaagaa gtggttttaa gttttaaaac gagtaaattt aatcttgaat
     7321 atcttttaaa acttgatttt ttaaaaatat ttgatttaaa aataaacact cattatgaaa
     7381 tcaatctttc aaaacaagag atcttaaaag aagaaatttt taaaacaaaa aattcaaaaa
     7441 tgaaactcaa atcttttgaa ttaagggctt tgcaatgtgc ttttgttatg gatgaaattt
     7501 cacattttgt acgcaaaggt ttaaagcctg aaaatattgc agttataact ccagatgaaa
     7561 gtttttgtga gtttttaaga ctttttgata aagacaatat gcttaacttt gcaagtggaa
     7621 ttagtattaa agagagtttg ttttatcaaa aatttcaagc actttatgaa agtgctagta
     7681 gtgcttcttt tgtctataaa aatcaagagg attattttga agacacgcag atgatttttg
     7741 attatcacaa tacgctttta cattctttaa aacttgattt tatagagttt aaaaagtatt
     7801 ttgatgagaa atgtgatttt gaatattttg aaaaattact tgctttgttt ttagaaaatg
     7861 aaaagcaaga gcttatttat ttgatacgaa aagaacttta ttttattaaa gatttattga
     7921 aaaatcagtc tttaactctt aaagagttga tccatctttt tttcatgcaa atttcacaac
     7981 tttcccttag tgatgtaggt ggaggtaagg ttacggtaat gggactttta gaaagtcgtg
     8041 ggctttgttt tgatggagtg attttggttg attttaatga agaatttatt cctaaaagaa
     8101 gtgttaatga gcttttttta aacaatgaag tgcgtaaaaa agcaggattg attagctatg
     8161 atagaagaga aaatttacaa agattttatt atgaaagctt gatgaagaat gctttagaag
     8221 taagtatttg ctttgtggaa aatgaagaaa aaagcaaatc acgtttttta gatgaacttg
     8281 attttgactt tttttatgaa actcatatcc accaaaaagc ttatcttaat gctttaaaat
     8341 tagactatga aggcataaaa cctaatctaa ctcctataaa agctcctatt ttaaagcata
     8401 atcctttcga gtttccgctt tcttttagtc gttttaattt attggaaaat caaaaaagaa
     8461 cttattatta tcgttatatt ttaaatttag cagaacctag ggttttaagc gaggaaagca
     8521 aagcgaaaaa tcaaggaaat tttatccata aaatgcttga aatttattat aaaaattatg
     8581 caaataatga ttttgatata aaagtttttg caaatttatt ggataaagaa tatcaaaaat
     8641 acaatatcag tgaacttgat cttgaagtat ttaaattaaa atttatacaa tttgctaaaa
     8701 atgaaaaaga gcatttttca aaaggctttt atgtcgcaca tacagagctt gagttaaaca
     8761 atattttaaa gctcggaaca gatagtataa aacttaaggg tactatagat cgtatcgata
     8821 gttcaaaaga aggtaatttg attattgatt ataaaagtgg aaaagtgcca agtaattctt
     8881 atcaacttgc tttttaccaa gctttatatg atgaaaatgc aagcgtgggt ttttatgatt
     8941 taaatagtat gcaaatattg catcaaaaag ccaaaagttt agatgagcta agagaaagac
     9001 ttaaagattt agttcttatg agtaaggaag aaatagagtt tgaaaatgaa caagatgagt
     9061 attgtcctta taaactcatt tataaaaagg aattaaaatg agtcaatttg agcctttttt
     9121 ggcattagaa gcgagcgcag gaagcggaaa aacctttgcc ttgagtgtgc gttttgtagc
     9181 acttatttta aaaggagcta ggattaatga aattttagct ttaactttta ccaaaaaagc
     9241 tgctaatgaa atgcaaaaaa gaattattga gactttttta aatttagaaa aagaaaataa
     9301 aaccagtgaa tgcaatgaac tttgcaagct tttaggtaaa gataaagaag agcttatttc
     9361 tttaagagat gctaaaaaag aagaattttt aagaacagag ttaaaaatca gtacttttga
     9421 tgcttttttc ggaaaaattt tgcgtgtttt tgctttaaat ttgggcttaa gtagtgattt
     9481 tacaatgagt gaagagaggc ttgatgtaag agagattttt ttaaaacttc ttaaaaaaga
     9541 tgaattaaaa gatttggctt attatattaa tttagttgat gagaaagaaa atttttttaa
     9601 cgagcttgaa aaattttatg agaatgctta ttttcaaaat cgtcctaaaa ttctaaatcc
     9661 aactaaagct tatatcaata aagcttatag tgagttaaga agttattgtt tgggtcttac
     9721 tcatgtaaaa aattataaaa atttgtgtga caattttaaa agtgaagttt tagatttatc
     9781 tgtatttatg caatcaagtt ttatgacaaa atttgaaagt acaaaatatt tgcaagattt
     9841 agaaagcact aacttgcatt ttagtgcaaa aagaatggag cttataaatg ctttaaatac
     9901 ttatgctata gagcttgaaa attataaaat tgctaattta atgaatcttt taaatcatta
     9961 tagtgaagct aaaaatatat ttcataaaga taaaaatacc ttaaatttcc aagatgtgag
    10021 taaaaaagtt tatgagctaa taactagtga atttaaggat atgatttatt ttcgtttaga
    10081 tggttttatt tcgcatttgc ttattgatga atttcaagat acaagcgtga tccaatatca
    10141 aattttacgc cctttgatta ctgagcttgt ttcaggagaa ggagttaaaa aaaatcgcac
    10201 ttttttttat gtaggagata aaaaacaaag tatttatcgc tttcgtaaag gaaaaaaaga
    10261 attatttgat ttgt
//
LOCUS       DAQSLY010000052        10228 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.052, whole genome shotgun sequence.
ACCESSION   DAQSLY010000052 DAQSLY010000000
VERSION     DAQSLY010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10228
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.052"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..433)
                     /locus_tag="R2H98_001039"
     CDS             complement(<1..433)
                     /locus_tag="R2H98_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023931.1"
                     /translation="MGEDITFSIFWGLVGFIFRLVTIDTILYITALSVLIAFSIINYW
                     MRINIKEFLKSYFSISFIIFFTAIIIIFYLSYDLETYRGYVMLGPPEAEELSPQEYIV
                     YKCSKFLIFINFIFFTITFIIFSCLLQAYLFKCHSTGEKCKK"
     gene            complement(552..1055)
                     /locus_tag="R2H98_001040"
     CDS             complement(552..1055)
                     /locus_tag="R2H98_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023932.1"
                     /translation="MGEDIILSIFWGLFGFILAFTNIKFYLTTLSVLVVFSILNYWIK
                     INIKEFVKSYFLISFIIFFMAIVIIFYLSYDLEFYKSLVLLDPPEIEKLSPQEYRVRN
                     YFKFLTFATMFFLVITFFIFPCLLQAYLFKCYSTGEKHKKLSWLIGFVCNIFLLIASV
                     YVVYENL"
     gene            complement(1174..1671)
                     /locus_tag="R2H98_001041"
     CDS             complement(1174..1671)
                     /locus_tag="R2H98_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023933.1"
                     /translation="MGDSITLSIFVGSLLSIAVITKFYLIALSVLIAFSIINYWIKIN
                     IKEFVKSYFLISFIIFFMAIVIIFYLTYDLETSRSLVLLGPPEVEKLSSQEYKAYNYF
                     GFLTYITMFFLVITFIILPCLLQAYLFKCHSTGEKHKKLSWLIGFVCNIFLLIASVYV
                     IYENL"
     gene            complement(1672..3192)
                     /locus_tag="R2H98_001042"
     CDS             complement(1672..3192)
                     /locus_tag="R2H98_001042"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023934.1"
                     /translation="MDEELFWENIVPVGHINEETLKSQIYINNINFSTLQYDETVLPT
                     ELECCYNEFKYYQKSNNEIATLGWAISYQLQVLWQNSPKIDTIQNYHLPVKQNKPNNP
                     QAEQRLKEIQNFLQSKGIEPLILHYTPYPNNTQTQEMKRLRQNSERFSRHVDNKTNEV
                     REERRSIKFYTTLDWDKFYSHFPIIKRLSKKFHTKEDIYTQNFTKQIEIILQKTHNIL
                     ILKNLPQGEYKFDFAIDIKENRSDKNEESYFIIKENDEISKDYKRILDCKPYELDTLN
                     CQYIGVGDDEFFRQIWQNLGINIAEKFKVDFSYARLDKFIFATSPFGLTYNTYETLEQ
                     TYDELMQDLSLYACSGKFSFNFVPSKLSIKKEIQGDREKVSYRVDEMLVYVYDSFDFL
                     DQGHEFDDKGNFIKLGQPVGAWDFNEKSFSIEGSLYQMGTYRYSDVVQDTFIEITFED
                     ILQSPKTKQYYIYNQDYQDYQKFTPYGLDFRLYSKNFITKLDFKDKAYNVLYDTGV"
     gene            complement(3334..3651)
                     /locus_tag="R2H98_001043"
     CDS             complement(3334..3651)
                     /locus_tag="R2H98_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023935.1"
                     /translation="MIGKDFLYSIHKDKKSIYLFCENKSIIDCQSIYDELYKLEATTD
                     FTFEELQNYQAYIFLNSTLLTGSNELPNNPFYFGELDQDNAIKQDTPSYYFSPSNEFK
                     CKS"
     gene            complement(3659..5182)
                     /locus_tag="R2H98_001044"
     CDS             complement(3659..5182)
                     /locus_tag="R2H98_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEE9023936.1"
                     /translation="MEELINNLRGYAELAQASYFNFMYINNDEREMDSYKIGQNRFPK
                     DKDNIENLEYTKTLSKKYKDYFIYDDSIALYPTLNGEFGEIQAKNFAKKYEIKFHQPN
                     TASGFSATLFYDKEKDKFVVGFRGTEGLWSMDTLADIGLTFGKGDFQLNALKQFLLDI
                     APILNKVDSNNIIFIGHSLGGYLAVIAMQFCDTIDRSLNTQFNAIKFMASQVYTFNSP
                     AIDEIDNMLMRALAALLDKNIMEQVLNPQKVYCVYDSGGINIIASAQYGSHNRLPIYT
                     GKDSHSIIPLTQTLYFYSYLLELDANHNKVKDKSFSECIEYLNHFIKNIQIYTETFVL
                     KNNATNKNSSFGFNKNHPEKINHFEYSLSLIATIMQETNGILEELGDSYYTSYKAPTI
                     SQTKIIDFILKAQEKEKYILILDKNDFNKYRKDCSFINNQENLAHKIAIGEFRIFIVV
                     YKDMKCLENINNITKIYGYNSKSYKIKDQIWDEQYLGGVCKISQALYFNGKAKIGII"
     gene            complement(5439..5762)
                     /locus_tag="R2H98_001045"
     CDS             complement(5439..5762)
                     /locus_tag="R2H98_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023937.1"
                     /translation="MAELAQASYGYFHYVDNKFDIKDEDKIVTFENVLDITYKNSKII
                     DERGFKIGKLDGDFSPLQAKQFFERYDLLIHQTNTESSFSAALFYDTHKDGFVVWFRE
                     TECGF"
     gene            6289..6876
                     /locus_tag="R2H98_001046"
     CDS             6289..6876
                     /locus_tag="R2H98_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HEE9023938.1"
                     /translation="MVVNGVSENKIKAKNKDVNINNGTKYTNTTKSNNISSSENNTQE
                     KITHLSNDGQNLLKNIEKLRLKPYNDQNGKEITSYVKGATIGYGHLIGQNEWDLYKNG
                     ITLQEADKLFKSDLLPFENAVKNSINSSLAQNEFDDLVILCFNIGIDNFKNSFVAKII
                     NAEKTGYKTLKEAWMAWNKSQNKVMQGLINRRNAE"
     gene            6905..7264
                     /locus_tag="R2H98_001047"
     CDS             6905..7264
                     /locus_tag="R2H98_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023939.1"
                     /translation="MVIFKNILLFLFFSTYLLAQEDFTPLEQCTYENEKFWIKILNLC
                     PEGNITCDKVVYVGVNKNNGKYIVLNGKSISDVNMNFKGYVFKNGIYEYNIFNNFLYI
                     SKNKQIIQEYRLKLCEK"
     gene            7533..>10228
                     /locus_tag="R2H98_001048"
     CDS             7533..>10228
                     /locus_tag="R2H98_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023940.1"
                     /translation="MFISSKTELIQTIKNLTINNKEVKQIDFIYPNFSILHAILKNID
                     FHQRKMLSKNQILTMEILEILKQTCDNHNNIEINIHTLNELDAGQNVNLKDLSSSEIC
                     TKVYLEDLEEEIQDKKQDKDLNLFYHTDKNNLCIEFINTLKELAKDSEDITTLDELIE
                     NIDPDDISSEKFDDFKKKVLEKIGNVIESDFFKNSISPTLKNTYEKFINELLEHIKKL
                     AEEKEYEKIKIILSAIAGVAIATVVAVLTGGAGLAILAAGLFSLMGSASEYYEFAQRD
                     YGTLLTPLAAFLATRCAMFIHYINSRLLSCVLIIDKKEIIDLSGFGLYLGSDESNIAS
                     NLAYKITLSEEIKSIENIFSEIFLNPEQKDKGYKNTPNDSKSSNLPAFISTQKLSNLY
                     LKNNAILKNLQEDIKQFIYFSYIESPNFNSSKLAEFFAQKNQNAQIDLNTTKISKNYL
                     IISNIPNKYNAGLSESLTQEIANYNIQDKYRRIKKNIDTSKKTYDSTRDYSEYSIEMP
                     QDENEPYILQLSPFVKISKEAYENSKKAYEDMQKVYKYLTNFVATPQKLPEFAKTAKE
                     KLAISENEPIIEIVKKTENLRHCERINILAYIDYNKKINDKKWLPYFYIKKFFKQNEV
                     KESIIEKEKKIAHQYLTFLKKEFFEKSDKSSFGNYSLMECLFISFVLYQAKLIFPNIN
                     LDLKKYGGSNFVYIKYLDKTYVLWTDECPIYVNNEPTNITAYEVVSQLLKILDKKDYS
                     FVENDSSITIDDFFNELSKDLDTTNTLDKKIIKLKQMYHLDEQKCIKEFMNLDEETQR
                     AFVAWMDIEKQISDLSKLLEQMYGKEYLNKAKEQKTSEIFTYAMLKILLSASPFISFT
                     AQMLWDFNFLKTIEYVIQACIKINKEGFKEFFKEQLGIFAPP"
BASE COUNT         3945 a         1382 c         1347 g         3554 t
ORIGIN      
        1 attttttgca tttttctcct gtgctatggc atttaaataa ataagcttgt aataaacaag
       61 aaaatataat aaatgtgatt gtaaaaaaaa taaaatttat aaagattaaa aatttagaac
      121 acttatatac tatatattct tgtggtgata attcttcagc ttctggagga ccgagcatta
      181 catatcctct ataagtttca agatcatagc taagataaaa tatgataata atagctgtaa
      241 aaaagataat aaaagatatt gaaaaataag attttaaaaa ttcttttatg ttaattctca
      301 tccaataatt tataatagaa aaggcaataa gaacgcttaa ggctgtaata taaagtattg
      361 tatcaatagt aacaagccta aaaataaatc ctaccaaacc ccaaaaaata gaaaatgtaa
      421 tatcttctcc catttaaact cctgtattat aaagcacatt ataagcttta tctttaaaat
      481 caagcttagt gataaaatct ttactataaa gtctaaaatc caaaccataa ggagtgaatt
      541 tttgatagtc tttaaagatt ttcatatacc acatacacac tcgcaattaa taaaaagata
      601 ttacacacaa accctataag ccaacttaat tttttgtgtt tttctcctgt gctataacat
      661 ttaaataaat aagcttgtaa taaacaagga aatataaaaa atgtgattac taaaaaaaac
      721 atagttgcaa aggttaaaaa tttaaaataa ttacgcactc tatattcttg cggtgataat
      781 ttttcaattt ctggaggatc aagtaataca agcgatttat aaaattcaag atcatagcta
      841 agataaaata tgataacaat agccataaaa aagataataa aagatattaa aaaataagat
      901 tttacaaatt cttttatgtt aattttaatc caataattta aaatagaaaa gacaacaaga
      961 acacttaaag ttgtaagata aaattttata ttagtaaaag caagaataaa tccaaataaa
     1021 ccccaaaaaa tagaaagtat aatatcttct cccatttaaa ctcctgtatt ataaagcaca
     1081 ttataagctt tatctttaaa atcaagctta gtgataaaat ctttactata aagtctaaaa
     1141 tccaaatcat aaggagtgaa tttttgatag tctttaaaga ttttcatata tcacatacac
     1201 actcgcaatt aataaaaaga tattacacac aaaccctata agccaactta attttttgtg
     1261 tttttctcct gtgctatggc atttaaataa ataagcttgt aataaacaag gaagtatgat
     1321 aaatgtgatt actaaaaaaa acatagttat ataagtcaaa aatccaaaat aattatatgc
     1381 tttatattct tgtgatgata atttttcaac ttctggagga ccaagcaata caagcgatct
     1441 agaggtttca agatcataag taagataaaa tatgataaca atagccataa aaaagataat
     1501 aaaagatatt aaaaaataag attttacaaa ttcttttatg ttaatcttaa tccaataatt
     1561 tataatagaa aaggcaataa gcacagataa agctataaga taaaattttg tgataacagc
     1621 aatggatagc aatgaaccta caaaaataga aagcgtaata ctatctccca tttaaactcc
     1681 tgtatcataa agcacattat aagctttatc tttaaaatca agcttagtga taaaattctt
     1741 actataaagt ctaaaatcca aaccataagg agtgaatttt tgatagtctt gataatcttg
     1801 attgtaaata taatattgtt tagtttttgg agattgcaag atgtcctcaa aggttatttc
     1861 aataaaagta tcttgtacta catcactata cctataagtc cccatttgat ataaagaacc
     1921 ttctatgcta aaactctttt cattaaaatc ccaagcccca acaggttgtc ctagcttgat
     1981 aaaatttccc ttatcatcaa attcatgtcc ttgatctaaa aaatcaaagc tatcataaac
     2041 ataaacaagc atttcatcaa cgcggtatga taccttttct ctatctcctt gaatttcttt
     2101 tttaatgctt aattttgaag gaacaaaatt aaaagaaaat ttaccactac aagcataaag
     2161 agatagatct tgcatgagtt catcataagt ttgctctaaa gtctcatatg tattataagt
     2221 aagtccaaat ggcgatgtcg caaaaataaa tttatcaagt ctagcataag aaaaatctac
     2281 cttaaatttc tctgcaatat ttatacctaa attttgccaa atttgtctga aaaactcatc
     2341 atcacccaca cctatatatt gacaatttaa agtatcaagc tcatagggct tacagtctaa
     2401 aatgcgttta taatcttttg aaatttcatc attttcttta atgatgaaat aagattcttc
     2461 atttttatcg cttcgatttt cttttatatc gatcgcaaaa tcaaatttat attctccttg
     2521 aggtaaattt tttaatatca aaatattatg agttttttgt aagattattt ctatttgctt
     2581 tgtaaaattt tgagtgtata tgtcttcttt tgtatgaaat tttttactta gtctttttat
     2641 tataggaaaa tgagaataaa acttatccca atctagcgta gtgtaaaatt taatagaacg
     2701 cctttcttct cttacttcat ttgttttatt atctacatgg cgcgaaaaac gctctgaatt
     2761 ttgccttagt cttttcatct cttgggtttg tgtgttgttt ggataagggg tataatgtaa
     2821 aataagaggt tctatacctt tactttgtaa gaaattttgt atttctttta gtctttgttc
     2881 tgcttgggga ttattaggct tattttgttt tacggggaga tgataatttt gtattgtatc
     2941 tatcttaggg ctattttgcc acaatacttg aagttgatag ctaatagccc aacctagtgt
     3001 tgctatttca ttattgcttt tttgatagta tttaaattca ttataacaac actctaattc
     3061 tgtaggtaac actgtttcat catattgtaa agtgctaaaa tttatattat taatataaat
     3121 ttggctcttt aaagtttctt cattaatatg tcctactgga acaatgtttt cccaaaaaag
     3181 ttcttcatcc attatttcat cctattgttt ttatatttta gaaattcctt aagcatgttc
     3241 tcatttaaat ttatagaata cctagtccag cacattctag catatttata aagtttcata
     3301 tatttggctt gttttcatat attattttat cctttatgat ttgcatttga attcattact
     3361 aggagaaaaa taataactag gtgtatcttg ttttatggca ttatcttgat ctaattctcc
     3421 aaagtaaaaa ggattgttag gaagttcatt tgagcctgta aggagggtgg agtttaggaa
     3481 gatataagct tgatagtttt gaagttcttc aaaagtaaaa tctgtcgttg cttctaattt
     3541 ataaagttca tcataaatac tttgacaatc aattatgctt ttattttcac aaaacaaata
     3601 aatacttttt ttatctttat gaatagaata taaaaagtct ttacctatca taattttcct
     3661 aaataatacc tattttagct tttccattaa aatacaaagc ttgtgatatt ttacaaactc
     3721 cacctaaata ttgctcatcc caaatttgat cttttatttt ataacttttt gaattatatc
     3781 catatatttt tgttatatta ttaatatttt caagacattt catatcttta taaaccacaa
     3841 tgaaaattct aaattcccca atggcaattt tatgagctaa gttttcttga ttattaataa
     3901 aggaacaatc ttttctgtat ttattaaaat catttttatc aagaattaaa atatattttt
     3961 ctttttcttg cgcctttaaa ataaaatcta tgatttttgt ttgactaatg gtaggagctt
     4021 tataacttgt ataataacta tctccaagct cttctaaaat accatttgtt tcttgcatta
     4081 tagtggctat taatgaaaga gaatactcaa agtggttaat cttttctgga tggtttttat
     4141 tgaacccaaa agagctattt ttattagtag cattattttt taacacaaaa gtttctgtat
     4201 atatttgaat attttttata aaatgattaa gatactctat acactcacta aaacttttat
     4261 ctttgacttt gttatggtta gcatctaatt ctaaaagata ggagtagaag taaagagttt
     4321 gagttagggg gattatggag tgagaatctt tacccgtata gataggcagt ctattgtgtg
     4381 agccatattg agcagaagcg atgatattta taccaccgct gtcatagaca caatatactt
     4441 tttgaggatt taagacttgc tccataatat ttttatctaa taatgctgcc aaagcccgca
     4501 ttagcatatt atcaatctca tcaatagcag gagaattaaa agtatagact tgcgatgcca
     4561 taaatttgat tgcattaaat tgtgtattta agctcctatc aatagtatcg caaaattgca
     4621 ttgctataac tgctaaatat ccgcctaaag aatgccctat aaaaataata ttatttgaat
     4681 ctactttgtt taaaataggt gctatgtcta ataaaaattg ctttaaagca ttaagttgaa
     4741 aatcgccctt accaaaggta agccctatat ccgccaaagt atccatactc caaagtccct
     4801 ctgtccccct aaaccctact acaaacttat ctttttcttt atcataaaac aaagtagcac
     4861 taaagccaga agccgtattt ggttggtgga atttaatctc atatttttta gcaaagtttt
     4921 tagcttgaat ctccccaaat tctccattaa gtgtcggata tagtgcaatg gaatcatcat
     4981 aaataaaata atctttatat tttttagata aggtctttgt atattctaaa ttttctatat
     5041 tgtctttatc tttagggaat ctattttgcc ctattttata actatccatt tctcgctcat
     5101 cgttattgat atacataaag ttaaaataac ttgcttgggc caactcggca tagcctctta
     5161 gattgttgat taattcttcc atttagtctc ctaaagttaa tttagcacca aaaacagagc
     5221 aaatgccaaa gggtaatata aaaacaatat taaaaaattc cttaaatatt ttttaattct
     5281 tgttattcca aaaagccata gattggctat cattagtgga aagactatcc aaccaagcat
     5341 tataaaaaac tcctcaaccc tatttggatt atgtccaaca ataggagata taaaccaacc
     5401 tacaacacat aatataatcc aacaaatata aagtattttt agaatccgca ttctgtttcc
     5461 ctaaaccaca ccacgaaacc atctttgtgt gtatcataga acaaagcagc agaaaagctt
     5521 gactctgtat ttgtttgatg gattaataaa tcatatcttt caaagaattg tttggcttgg
     5581 agtggggaga agtcgccatc gagcttgccg attttaaatc ctctttcatc aataatttta
     5641 gagtttttat aggtaatatc taaaacattt tcaaaggtaa caattttatc ttcatctttt
     5701 atatcaaatt tattatcaac ataatgaaaa tatccataac ttgcctgtgc aagttctgcc
     5761 atgtccctta gtttattgat ttattgttta ttatccatat aattctccta ataagcttct
     5821 gcaatctatt tcaccgtcaa gctttaatct aaaatccata ttaccctcat taccataaat
     5881 atttggtgca tagtttttcc atattggtct aaaatatatt ttattaatat ttttaaaagt
     5941 taatgttttg ttatttggat tcttataata aatatatata cctaaatcta ttctattacc
     6001 ataacctatt tttgcataac cattttttcc tatactacca tctaaactct tatcaaaata
     6061 agctaagatt ctattatatt tttcctcact ttttggataa ttatttaatt tacataacct
     6121 tctaaattcc caatagctag gatataaaaa ggggtataaa ataatataat taaaattatt
     6181 ggtgataata gcactaaaat ctttttatat tttttcattc tatcaccttg actagatgaa
     6241 atcttagaag atgaagatag aaaacaagag ctttatgttg gtaaatttgt ggtggtaaat
     6301 ggggttagtg aaaacaaaat aaaagcaaaa aataaagatg taaatataaa taatggcaca
     6361 aaatacacaa acactacaaa aagcaataat ataagttcta gtgaaaacaa tacccaagaa
     6421 aaaatcactc atctaagcaa tgatggtcaa aatcttttaa aaaatataga gaagctaaga
     6481 ctcaaacctt ataatgatca aaatggaaaa gaaattactt catatgttaa aggtgcaact
     6541 atcggatatg gacatcttat agggcaaaat gaatgggatt tgtataaaaa tggtattact
     6601 ttacaagaag cggataaatt gtttaaaagc gatttgttac cctttgaaaa tgctgtaaaa
     6661 aattcaataa actcttcctt ggcacagaat gaatttgatg acttggttat attatgtttt
     6721 aatataggga ttgataattt taaaaactct tttgttgcca aaatcatcaa tgcagagaaa
     6781 acgggttaca aaacattaaa ggaagcttgg atggcgtgga acaaaagtca aaataaagta
     6841 atgcagggac taattaatag gagaaatgct gaataaagct ttacactcaa ggaggttatg
     6901 aaaaatggta atttttaaaa atatattatt gtttttattt tttagtactt atttgttagc
     6961 acaagaggat tttactccac tagagcaatg tacctatgaa aatgaaaagt tttggataaa
     7021 aattttaaat ctatgtccag agggtaatat aacttgtgat aaggttgtat atgtgggtgt
     7081 caataaaaat aatggaaaat atattgtctt aaacggtaag tctattagtg atgtaaatat
     7141 gaattttaaa ggatatgttt ttaaaaatgg tatttatgaa tacaatattt ttaataattt
     7201 tttatatatt tctaaaaaca agcagattat acaagaatat cgtctgaaat tatgtgaaaa
     7261 atagacgcaa caaaggcagc aagcaacaac aaatacctag aatatgtaaa aagttaaaaa
     7321 gatacaataa gaattacaag aagtttttaa agttataaaa atcctaatta atgaaatctt
     7381 agctcctaaa ttttacaaca aatacaaaga tttagaagtt gagattgatg ataagggtaa
     7441 tgtgcttagg tggataggag agattaatag agagacaaaa aatattagca aataaaaaat
     7501 gatataataa tgctttatat aaggaatctt ttatgtttat aagttctaaa acagagttaa
     7561 ttcaaactat taaaaattta acaatcaaca ataaagaagt taaacagatt gattttattt
     7621 atcctaattt ttctatttta cacgctatat taaaaaatat tgattttcat caaagaaaaa
     7681 tgctatctaa aaatcaaata ttgactatgg aaatactaga aattttaaaa caaacttgtg
     7741 ataatcacaa taatatagaa ataaatatcc atacccttaa tgagcttgat gctggacaaa
     7801 atgtaaattt aaaagattta tcaagcagtg aaatttgcac taaagtttat ttagaagact
     7861 tagaagaaga aattcaagac aagaaacaag ataaagattt gaatcttttt tatcatacag
     7921 ataaaaataa tctttgtatc gaatttatca atactttaaa agaactagcc aaagattctg
     7981 aagatataac aaccttagac gagttaatcg aaaacattga tcctgatgat ataagcagtg
     8041 agaaatttga tgattttaag aaaaaagttt tagaaaagat tggaaatgtc atagaatcgg
     8101 attttttcaa aaatagcata agtcccactt taaaaaatac ttatgaaaaa tttatcaatg
     8161 agttgttaga acacattaaa aaacttgccg aagaaaaaga atatgaaaaa attaaaatca
     8221 tactaagtgc tatagcgggt gttgcaatag ccacagtggt agctgttctt acaggtgggg
     8281 caggattagc tattttggct gctggtttat tttctttaat gggttctgca agcgagtatt
     8341 atgaatttgc tcaaagagat tatggcacac ttttaacgcc tttagccgca tttttagcca
     8401 ctagatgtgc tatgtttatt cattatatta attctcgctt gttatcttgt gttttaatta
     8461 ttgataaaaa agaaattatt gatttaagtg gttttggatt atatcttgga agcgatgaaa
     8521 gcaatatcgc ttcgaatttg gcttataaaa tcactttaag cgaagaaata aaaagcattg
     8581 aaaatatttt tagtgaaatc tttttaaacc cagaacaaaa agacaagggg tataaaaata
     8641 cacccaatga ttcaaaatcg agcaatttac ccgctttcat ttcaacgcaa aaattatcta
     8701 atttgtattt aaaaaacaat gctattttaa agaatttgca agaagatatt aaacaattta
     8761 tttatttttc ctatatagaa agtccaaatt ttaactcaag taaactagct gaatttttcg
     8821 cacaaaaaaa tcaaaatgca caaatagatt taaatacaac taaaataagt aaaaattatt
     8881 tgattatttc aaatatcccc aataaataca atgcaggact tagtgaaagt ttaactcaag
     8941 aaatcgccaa ctataatata caagataaat acagaagaat taaaaaaaat attgatactt
     9001 caaaaaaaac ttatgacagc acaagagatt atagcgaata tagcatagaa atgccacaag
     9061 atgaaaatga accttatatt ttacaattaa gcccttttgt gaaaatatcc aaagaagctt
     9121 atgagaatag taaaaaagct tatgaagata tgcaaaaggt ttataaatat ttaacaaatt
     9181 ttgttgctac acctcagaag ctaccagaat tcgcaaaaac agctaaagaa aaattagcaa
     9241 tatcagaaaa tgagccaata atagaaatag taaaaaagac ggaaaattta cgacattgcg
     9301 aacgaataaa cattttagct tatattgact acaataaaaa aataaatgat aaaaaatggc
     9361 ttccttattt ttatatcaaa aaattcttta aacaaaacga agtcaaagaa tccatcatag
     9421 aaaaagaaaa aaagatagct catcaatatt taactttttt gaaaaaagag ttttttgaaa
     9481 aatcggataa atcttcattt gggaactatt ctttaatgga atgtttattc atttcatttg
     9541 tcttgtatca agctaagctt atttttccaa atatcaattt ggatttgaaa aaatatggag
     9601 gcagtaattt tgtatatata aaatacttag ataaaactta tgttttatgg acagatgaat
     9661 gtccaatata tgtaaataat gagccaacaa atattacagc atatgaagtt gtatcgcaat
     9721 tattaaaaat acttgacaaa aaagattatt cttttgtgga aaatgatagt tcgataacta
     9781 tagatgattt ttttaatgaa ttatcaaaag atttagatac aacaaataca ttagataaaa
     9841 aaataatcaa attaaagcaa atgtatcatt tagatgaaca aaaatgcatt aaagaattta
     9901 tgaatttaga cgaagaaacg caacgagctt ttgttgcatg gatggatata gagaaacaaa
     9961 tatcagattt atcaaagctt ttggaacaga tgtatggaaa agaatattta aataaggcaa
    10021 aagaacaaaa aacaagtgaa atatttactt atgcaatgtt aaaaatttta ttaagtgcta
    10081 gtccttttat cagctttaca gctcaaatgt tgtgggattt taatttttta aaaacaatag
    10141 aatatgttat tcaagcttgt attaaaataa acaaagaagg atttaaagaa ttttttaaag
    10201 aacagcttgg tatttttgca cctccaaa
//
LOCUS       DAQSLY010000053        10155 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.053, whole genome shotgun sequence.
ACCESSION   DAQSLY010000053 DAQSLY010000000
VERSION     DAQSLY010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10155
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.053"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            7..774
                     /locus_tag="R2H98_001049"
     CDS             7..774
                     /locus_tag="R2H98_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEE9023941.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICTLENFI"
     gene            784..1524
                     /gene="pxpB"
                     /locus_tag="R2H98_001050"
     CDS             784..1524
                     /gene="pxpB"
                     /locus_tag="R2H98_001050"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEE9023942.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            1505..2470
                     /locus_tag="R2H98_001051"
     CDS             1505..2470
                     /locus_tag="R2H98_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEE9023943.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(2467..3363)
                     /locus_tag="R2H98_001052"
     CDS             complement(2467..3363)
                     /locus_tag="R2H98_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEE9023944.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(3396..3974)
                     /locus_tag="R2H98_001053"
     CDS             complement(3396..3974)
                     /locus_tag="R2H98_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEE9023945.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            4074..4421
                     /locus_tag="R2H98_001054"
     CDS             4074..4421
                     /locus_tag="R2H98_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEE9023946.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            4409..4858
                     /locus_tag="R2H98_001055"
     CDS             4409..4858
                     /locus_tag="R2H98_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEE9023947.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(4860..5936)
                     /locus_tag="R2H98_001056"
     CDS             complement(4860..5936)
                     /locus_tag="R2H98_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEE9023948.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(6164..9259)
                     /locus_tag="R2H98_001057"
     CDS             complement(6164..9259)
                     /locus_tag="R2H98_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEE9023949.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            complement(9262..>10155)
                     /locus_tag="R2H98_001058"
     CDS             complement(9262..>10155)
                     /locus_tag="R2H98_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9023950.1"
                     /translation="QPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQEI
                     NTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLSM
                     PNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPNI
                     KLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDRK
                     KLAFKNMSILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDYH
                     VDFMNELIDSFNKVDLIKKDN"
BASE COUNT         3345 a         1742 c         1528 g         3540 t
ORIGIN      
        1 caaataatgt tcaaagtgga tttaaatagt gatttagggg aaagttttgg cgcctataaa
       61 atgggaatgg atgaagaaat tttaaaattt gtaagttcag taaatgtcgc ttgtggcttt
      121 catgcgggtg atccttgtgt gatggatgaa accttaaatt tagccaagca aaatggtgtt
      181 tgcataggag cacatccatc ttatcctgat cttttgggtt ttggaagacg caatatgcaa
      241 ataagctttg aagaggctaa aaactatgcc ttgtatcaac taggagcttt atttggcttt
      301 gctaaggcaa aaggtatgaa aatacagcat tttaaagccc atggggcgct ttataatatg
      361 gcagctattg atgaaaattt agccttagca ctttgtgagg cagtggcgag ttttgatgaa
      421 aatattattt ttctagggct tagtaattct gctatgaatg aagcagctaa gaaaaagggt
      481 ttaagatatg ctaatgaagt ttttgcagat cgtgcctata atgatgatgg cactttagtt
      541 tcaagaaaat tagaaggggc gttaatacac gatgaaaatt tagctatcaa acgcgtgata
      601 aaaatgataa aagaaagcaa agttacaagc ataaatggca aggaaattga tttaaaagcc
      661 gatagtattt gtgttcatgg ggataatgca aaagctttag aatttgttaa aaaaatcaaa
      721 gaaaatttaa aaaaagagca aattcaaatt tgtactttgg aaaattttat ataagtttta
      781 gcaatgttta gtgtgcattt tagtggaagt aaagctttgc ttttgcgttt tgagcaagaa
      841 atttcacctc aaatcaatgc ctatgtttta agcacagaac aaaggataca aaaagcccta
      901 aaagaaggtg aaatttatgg gattgatgag ttggtaagtg cttatgcaag cttgcttata
      961 tattttaatc cttgcgtgct ttctttaaat tccttgcttg attttttgga aaaaattaaa
     1021 aaggatatta aacttgcaga acaaaactca agtctttgta tagaagttcc actttgttat
     1081 gatgaagaat ttgggctgga tttagaattt gtgtgcaaac acaatcaaat ttcaaaagaa
     1141 gagcttatat ctcttcacac taaaccttat tatcttgttt ttatgctagg ttttatggca
     1201 ggttttcctt atcttggagg tttagatgaa agacttttta ccccacgcct ttcaagccct
     1261 agagcaaaaa tagaagctgg aagtgtaggt atagccgata aacaaacagg agtttatccc
     1321 atatcaagtc cagggggttg gcaaatcatt gctagaacac ctttggaatt ttttgataaa
     1381 gaagatgaaa aaaatcccac tcttttaaaa gcgggtatgt ttttaaaatt taaagccatt
     1441 tcaaaagatg aatttttcga tatccaagag caagttgcta aaaaagtcta tcaaaaggaa
     1501 atttatgagt ataaaaatca ttgaagcatc tataaattca agtttgcaag actttggtag
     1561 aaaaaaattt gctaaatttg gcatagcaag aagtggagct atggatgaag atgctttaag
     1621 aatggcaaat atcttgcttg gaaacaaaca agatgaagca ggaattgagc tttgtttaaa
     1681 gggtggaaaa tacgaatttt tagatgagaa ttattttgtt ttaagtggag ctgaatttga
     1741 ggcaaagctt gataatcaaa aaatcaaaac ttgcaaagta tatcaagcaa ataaaggcga
     1801 tattttagaa cttgatttag caaaaatagg ttttcgtggg tatttatgcg tagcgggtgg
     1861 ctttgaagta aaaagttttt taaactctaa atccagtgat gctaaaatgg gagctggagt
     1921 ttttgaagga agagctttgc aaaaagatga tattttaaat actcataata cttttatacc
     1981 ttttaattta gaagctagag aatgtgaaaa tcctcttttt aaaagcccta aagagcctat
     2041 tatacgcgtt attttaggaa caaatgaaga tgcttttacc caaaaaggca tagaaacctt
     2101 tttaaatact acttataaag taggtttaaa aagcgataga atggcaattt atgcagaatc
     2161 tagtgaaagt atagagcata aaaactcagc agatatcatc tcagatcctg cggtttttgg
     2221 aagtatacaa gtgccaaaaa gtggtattcc tatcatttta atggcaggaa gacaaagcac
     2281 aggaggctac acaaaaatag ccacggttat agaaaatgat ctaagcttac tcgcacaagc
     2341 taagttaggt tctagcttta aatttcaaag cattagcatg caagaagcct tagaacttta
     2401 taaacaaaga gaaatgaaat ttaaagctat ggatcaaaaa atcaatcttg attttgaaaa
     2461 tttaatctaa gcttttttgc cataaatatt gataaaatat atagcaccta tagccaaggc
     2521 acaacctaac aaggtaagtg catttggcac ctcatctagt ataaaataac tacaaattaa
     2581 agcactagca ggagtgatta aaacaaaaga atttgcctta acgcttccta aaatgtgaat
     2641 cccataataa taaatactag ttcctataat agttgataaa aaagccacga caaacatact
     2701 gatccaaaat ttaaattcaa aatgaaaaat ttcataactt tttacatcaa acaatatcca
     2761 agaaaacatt aaaatagaaa tgagattaat ataaaagtta atcgccaaag ggtgagctcc
     2821 tttggcttta tgattaaaca ctgccatcaa agcccaaata aaagaacaag ttaaaaataa
     2881 aatattaaat ttaccaaata aatcttctaa actccctaaa tttagcaaac aaaatccaga
     2941 taataaacct aaaaataagc ctagaatttc actctttgtg atcttgtgag ttgatttttt
     3001 gtttttttga aaaaatatcg ctatcataaa tatcaaataa gaaaaaatag gaatcatagt
     3061 ggttactaaa actcctcctt tgcctgccaa gccgtgcttt atagcgataa aaaatacaaa
     3121 ggcataaagc ccatttaaaa ctcctgctat caatacccat tttaaggcag ttttttcgat
     3181 tttaagagga atttttaaga agtttaaaac aaaaaatgaa cccaatacaa caaagaaaaa
     3241 acgccaaaag gtaataatag aagtatccgt ataatttgct aaaatcttag atgttggcca
     3301 agatgagccc cataaaaaca tagcaataac aagcaagata tacaaatact ttgttcgagt
     3361 caatgttgca ccttgaaatt tttaagtcaa attttttaaa aaattttttt caagtgtagt
     3421 tcatactcgt ttagatattt ttccacttga ggatttttta ccacatcatt acacataaaa
     3481 gttggtaaag ctttcatacc tataaattca tgagccttat gcaaatgcca atacaccata
     3541 tctacaccct ttccttcaaa aaattcattt ttatcattaa aggcttcaag aggtgcattc
     3601 caagtgagag aaaacatgta ttttttacca tgatctaaac caccttttcc gtagttttta
     3661 ctaggatttt catgagttct tccatcattt ttaaaaagca ctccagcacc caaaccaaac
     3721 acttcatcga tatatttttt aactatccaa ggctccccca tccaccaagc tggcatttga
     3781 tagatcacag catcagcttt tataaatttt tgcatctctt ctttaggatc atatccttga
     3841 tctatgtgag tttgatctac ctcgtatcct agtgttttta aaatttctaa agcatgatta
     3901 tgcaatgtca aattaagttg tccttttgaa tttccaaatt ctttagcacc attaagcaag
     3961 agtatatttt tcatttttat ccttttttaa attttatgat acaattataa cttagcataa
     4021 tatcattttc aatacagaaa ataaagtaat atactatact aaaggaatgt taaatgacta
     4081 aagagaattc tccgtgcaat ttcgaagaat gtggatttaa ctatactcta gcattaatta
     4141 atggaaaata taaaatgagt attttatact gcttatttcg ctatgaaatc gtgcgttata
     4201 atgaactcaa acgcttttta agctccatat cttttaaaac tttaaccaat accttaagag
     4261 aactagaaaa cgatggttta attatcagaa aagaatacgc tcaaattcca cccaaggtag
     4321 aatatagctt atccaaacgt ggacaaagtt taattcccat tttacaagct atgagcaaat
     4381 ggggcaagaa agacaaaaaa gggaaaaaat gcttgaatta attggtgaac tttctttgca
     4441 aaattatatg ggagaatggc ttgaaatagc tagaaaaccg gccttttttc aaaaatcttg
     4501 cctaaattca aaggcaaaat acgagcttaa atacaaaaat ggcattcctt atgtagaaat
     4561 tgagaatttt tgcagtaaaa aaaatgaaat ttcaagtata aagggtaagg caaaaatcgt
     4621 ttcaaatagg caattagcag tgagatttaa catctttatg aaccttttta ataaagtaaa
     4681 ttatgaaatc atttttgttg atagcgagta taaagttgcc attgtgggta gtcctgataa
     4741 aaaatatctt tggattttag caagaaatat aatagatgaa aaaaatataa aagagctttt
     4801 aaacatcgct aagcaaaggg gatttgacat tagcgatgtg gtttttgata agtattaaat
     4861 tattcttttg tcatatcaat gacatagcga aatttagcct ttcctgaggt tagattttca
     4921 taagctttat cgatttcttg tggggtaata agctcggttt ctggataaat tccgtgtttt
     4981 aaagaaaaat caagcatttc ttgagtttca gcaataccac caattaacga gccataaacc
     5041 tttttacctg ccttatgtac aaaggttatc acgctgatac ttggagcaac ttcgtgaggt
     5101 ggcaaaccca ctatcgccat ttcaccgcca aatttaagca aatccaaata aatagcagga
     5161 ttataaggcg ttggaatggt tgagatgatt aaatcaaaac gttcttttac agcgttttta
     5221 tcgcagcttg tgtaaaatga gcttacaccc atagccaaag catcggcttt tttgttttca
     5281 tttctagcaa aaacgctaac ctttgcaccc attttcacag catatttaac cgccatcata
     5341 ccaagtccgc caaatcccgc tactgctacg cttgagcctt ctttgatatt tgaaaattta
     5401 agcggagaat aagtggtaat tcctgcacaa agcaaaggcg cgactttttc catcggtgca
     5461 tcttttggca cacaaacggc aaatttttca cttacaacta tgttgtttga gtagccccca
     5521 taagtgtttt cattgccatg aaatacatca caactattgt aagtaaagat ggttttgcca
     5581 ttttcgcaaa actgctcttg tgagcgtttg caagcatcgc actcaccgca tgaatttacc
     5641 atacaaccaa cccctgcgta atctcctact ttaaatttac tcacattttt acccacagcg
     5701 ataacttctc ctgctatctc atgcccaggc acgcaaggat aagtagcttc tccccactcg
     5761 cttcttgcgg tgtgaatatc gctatgacaa atgcctgcat ataggatttt aatcaaaata
     5821 tcattatcgc caatagcatg gcggctaaat tcaaaaggtg taaatttcgc atccttgcta
     5881 agcattgcat agcctttact tgcgatgcga ttgttttcta aaattttgta ttgcattttt
     5941 gctccttttt tgatttttta taattataaa acattagagt agctataagt caagagtgaa
     6001 aataattttt taaaaattta gtataaatac tggatactag tgaaattgta taaaattaag
     6061 caaattttat aacaaagaca tagttgcaac gacaaatcaa gctatctata ataaagataa
     6121 aagaaataat acaaacaaat ttaatttcag tatcgcttaa attctactcg ttagctaatt
     6181 ccttagccaa aatttcagct tgagctaaaa ctccatcaat tgcaagttgt tgcatatcag
     6241 gtggataacc atacttattt aacactcttt ttacagctac tcttaatctt gctcttacat
     6301 tttcttttat catccagtct atacttacat tgtttttgat aatttgcagt atttcactaa
     6361 cgagtgctaa tagtttttca ttgcctaaaa tcttttcata ctcatcatta caagcaagtg
     6421 ctgagtaaaa ggcgtattca tagtctttta aacctaactt cttagcctca tcttccatac
     6481 ttactatgct tttactcata tttattagct catctagcgc ctcgcttgat gagattagct
     6541 tattgttata ttttttgata gcatcactaa gcatttgtgc taatttttta gcctttgtta
     6601 ggcttagctt ttctcttgct tttatctcat catttagtat cttttttagc atttcaaagg
     6661 ctaaattttt acgcttcata ttctttactt ctagtaaaaa ctcatcagaa agtatagata
     6721 tatcaggctt ttttatacca ctagcatcaa aaatatccac cactttagat gatacaatag
     6781 ctttatctac tacttgcttt atcaaagctt gattaagcaa attttcattc tcattttctt
     6841 tagcaaactt taaaaaccta gcctttatcg catacataaa agcgatttta ttctttatgc
     6901 tcaaagcttt ttcgtgtggc atagctatcg tgtaggcttt atcaagtgct gcaaattctt
     6961 ttataaatct gttcttacca tcttcatttg ataatatatg ctcttctaca tcaagtatat
     7021 attcaagttt agcccccgta tcaagttcaa agtatttttc atagtcattt ggcagcattt
     7081 gttctacgat ttcaagcttt tctatcatca cttttacagc gtcttcttga gtagtgatta
     7141 tatcgccctt gccaccactt tcactataaa atgataaagc ttttttcaaa tcacttgcaa
     7201 tcccaagata atccaccaca agcccactag gtttatcctt ataaacccta tttactctag
     7261 ctatagcttg cattagatta tgccctttca taggcttatc tatataaaga gtatgaagcg
     7321 atggcacatc aaagccagtt agccacatat ccaccactat aactagtttt aattcatcgt
     7381 ctatatttct catacgattt gccaaaaact gcttttgaat cttacttgta tgatgtttac
     7441 taaactctac cccatcgcta gagcttgaag tcatcactac ttttatagcc ccgctactta
     7501 gctcatcgct atgccaactt ggtcttattt ttatgatttc atcatatagt tttatagcta
     7561 cgcttcggct tatacttact atcatacctt ttccgccgag cttactagac cttgtttcaa
     7621 agtgttttac tatatcttta gcgatttgtt ttagtctgct tgtgctacct actaaagctt
     7681 ctagcttagt agcttttgct ttttggctat cttggttttc aagcttttca tctaattcat
     7741 ttacaagcct ttttccttct tcgcttagct ctattttggc aagtctgctt tcataatata
     7801 tactcacagt agcaccatct tcaacagctc ttgatatatc atatatatct atgtagtttc
     7861 caaaaactgc aggggtgttt atatcatggc tttcaattgg cgttcctgta aatcctatat
     7921 aagtagcatt tggcaaagca tcacgcagat attttgcgaa accataaact atcttttgcc
     7981 ctagcacatc gccacttttt gacttttctt ctactacttt tgcatcaaag ccgtattggg
     8041 ttctgtgtgc ttcatctgca attacgatga tattatctct aagcgataag cactcaaata
     8101 cattatcatt ttctggacta aatttttgaa tagtagtaaa taccactcca ccactagcta
     8161 cccttaaaag ctcttttaaa tgctctttat cgtttgcttg ttttggctct tgtcttaaaa
     8221 ggttcgcaca acttgcaaaa gtaccaaaaa gctgatcatc tagatcattt ctatccgtga
     8281 taagcaaaat cgtaggatta tttaaagcct ttatcgcttt agcactataa aacaccatag
     8341 acaaagactt cccactacct tgcgtatgcc acaccacgcc acctttttta tctccgtctt
     8401 tgctacttgc tgtgattgtt ctactaatgg ctttatttac tgcgtagtat tgatgatagc
     8461 aagcgatttt tttggtagtt tttatactta aaataccatt taaatctctt atttgctctt
     8521 tttcaaaaac tatgaaattg caaatgatat ctagcaaggt ttttggattt agcataccat
     8581 ctattaaggt tttaatttct aaagacttgt ttggagcgta gtttatccca tcgctacttt
     8641 tccacgccat aaaccttgaa aaatcagccg aaatactccc cgccctagca aaatacccat
     8701 cgcttatcac acaaaaagca ttatatgtaa aaatacttgg gattgtttgt ttataagtgt
     8761 ttatttgatt ataagctgag tttatcgtgg cgttttcatc gcttgggctt tttagctcca
     8821 ttaaaacaag cggaattcca tttatatata gcactacatc ggggattttg ttttctttag
     8881 cttctgtgat gcttagctgg tttgttgcta taaattcatt gttgcttgca ttattaaaat
     8941 caattagatt tatgatatca gctctgcttt cgccgtcttt tgtagtgttt atatttaccc
     9001 catttacaag cttataatga aagttttcat tgctatctaa aaggctaaga tgatttttgc
     9061 tttttagctc cttataaatt tcattagctt ttgataaatc aagctgtgga tttagcctac
     9121 aaagtgcatt tacaaggcta gtttctagca aaacttcatc agtggctctt acaggctttt
     9181 catagcacca cccatgctca agtagtgatg atataacaaa ctgctctaaa tcaaactcac
     9241 tagtcttcgc cttgctcatt tttagttatc cttttttatc aaatctactt tgttaaagct
     9301 atcaataagt tcattcataa aatcaacatg ataatcttct aaatcatttt ttgtatattt
     9361 ttcacgagcc ctaaatgcgt tttggcaaat ttcttttttt cttgattcag tgtttaatat
     9421 aaatctttct ttctcttcat ttctatcagc aatacatttt tctaaataat ccaaaattga
     9481 catattttta aatgctagtt tttttctatc acttatctga gagtttgtta tcgtattgta
     9541 ttgtttatac ttaagtataa tattaactgc atctactatt atttttatag gcatgaaatc
     9601 ttcaatctcc caaatatctc tattattttc ttgtatcgat tctccatatc tttttaattt
     9661 ttttgcatct agctttatgt ttggatataa attatctttt gatattttat tgtattgttt
     9721 tctaccttct tcatcgttat caaaaataca tataaaatat ggtttaaaag aagtataact
     9781 gcactgatta ttaaaatatt ctaaaaaacc tgctatttta gttgcaccac cagaatgtat
     9841 tatatttggc atagataaat ttaaaatttc tattagcatt tgtaaatatt tcttatcttc
     9901 ttctccttca actaaaatat tataaggcat aatatcccaa ttatcattgg tttctatacc
     9961 taaatgtttt ttaataacag ataacttttc aaacgcagtg cctatataaa tcggttttgt
    10021 gttaatttct tgaaatactc tacctttttt tctagcataa atcttttctt cttttgtcaa
    10081 tttaaacaaa tgagtattga ctaaattatt aaaatctaca aagtattgag aatgtgttgt
    10141 cataattata ggctg
//
LOCUS       DAQSLY010000054        10141 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.054, whole genome shotgun sequence.
ACCESSION   DAQSLY010000054 DAQSLY010000000
VERSION     DAQSLY010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.054"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            80..1879
                     /locus_tag="R2H98_001059"
     CDS             80..1879
                     /locus_tag="R2H98_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEE9023951.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGNSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKHGLKHEITITLMDLPSNCKGAHD
                     VPFYEKILKEILTAEIPFHSICFKDASGTSNPNKIYKTIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LRYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVTPD
                     ANIVELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEDIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEILAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1892..3466
                     /gene="pckA"
                     /locus_tag="R2H98_001060"
     CDS             1892..3466
                     /gene="pckA"
                     /locus_tag="R2H98_001060"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEE9023952.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     YEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3476..4858
                     /gene="argH"
                     /locus_tag="R2H98_001061"
     CDS             3476..4858
                     /gene="argH"
                     /locus_tag="R2H98_001061"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEE9023953.1"
                     /translation="MKNEMWSGRFSDASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYRTNRELSAEIL
                     GFKDIMLNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4880..5983)
                     /gene="ychF"
                     /locus_tag="R2H98_001062"
     CDS             complement(4880..5983)
                     /gene="ychF"
                     /locus_tag="R2H98_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEE9023954.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(5980..7431)
                     /locus_tag="R2H98_001063"
     CDS             complement(5980..7431)
                     /locus_tag="R2H98_001063"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEE9023955.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNRA
                     SIHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAVMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGASGAGVRMCVNYLIQILRKAK"
     gene            complement(7428..8024)
                     /locus_tag="R2H98_001064"
     CDS             complement(7428..8024)
                     /locus_tag="R2H98_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEE9023956.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8043..8591)
                     /gene="apt"
                     /locus_tag="R2H98_001065"
     CDS             complement(8043..8591)
                     /gene="apt"
                     /locus_tag="R2H98_001065"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEE9023957.1"
                     /translation="MIKLTQEEKKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLRHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8588..8920)
                     /locus_tag="R2H98_001066"
     CDS             complement(8588..8920)
                     /locus_tag="R2H98_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023958.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8920..9357)
                     /gene="rpiB"
                     /locus_tag="R2H98_001067"
     CDS             complement(8920..9357)
                     /gene="rpiB"
                     /locus_tag="R2H98_001067"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEE9023959.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9524..10078
                     /locus_tag="R2H98_001068"
     CDS             9524..10078
                     /locus_tag="R2H98_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEE9023960.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
BASE COUNT         3426 a         1493 c         1718 g         3504 t
ORIGIN      
        1 tcgcctatag caataatttt ggtaatgtgt tatcaaattt ttgtataata atgaaaaaat
       61 atttttttaa ggaaaaataa tggctaaaaa attcatcgat gtaatggata caagctttag
      121 ggacggtttt cagtctgttt atggagctag ggttttaatg gatgattttt ttcctgcagt
      181 agaagcagca aaagaagcgg gtattactca ttttgaattt ggtggtggtg ctagatttca
      241 aagcttgtat ttttatctta atgaagatgc ttttaccatg atggatagat ttagggctat
      301 tgtaggaaaa gatgctaatc ttcaaacttt agcaagagga gtcaataccg ttactttaga
      361 tactggaaat agtgaactta ttgatttgca tgcaaaactt tttgcaaaac acggtactac
      421 aacgataaga aattttgatg cccttaatga tgtaaataat ttaaaattta gtggtgaatg
      481 tatagtaaaa catgggttaa agcatgaaat tactattact ttaatggatt taccgtcaaa
      541 ttgcaaaggt gctcatgatg tgccttttta tgaaaaaatt ttaaaagaaa ttttaacagc
      601 agaaattcct tttcatagta tttgtttcaa agatgcaagt ggaacttcta atccaaataa
      661 aatttataaa accattaaaa tggctagaaa aattttacct caagatacac atattagact
      721 tcatacgcat gaaaccgcag gggtgagtat agcttgctat cttgcagcgc ttgaagcagg
      781 ggttgatggt attgatttgg ctgcagctcc tgtaagtggt ggaacttctc agcctgatat
      841 tttaaccatg atgcatgctt taaaaggcaa agattatgat ttaggtggac ttgaagaaga
      901 aaaaatttta agatacgaag aagttttaaa agattgttta aaagagtatt ttttaccacc
      961 tgaagctact atggtaaatc cacttattcc tttttctcct atgccaggag gagctttaac
     1021 agcaaataca caaatgatga gggataataa tattttagat aaatttccac aggtcattca
     1081 tgctatgaga gaagttgtgg aaaaaggtgg atttggtact tcggttactc cagtttctca
     1141 attttatttt caacaagcat ttaataatgt tatgtttggg ccttggaaaa aaatcgcaga
     1201 aggttatgga aaaatggtac ttggttattt tggaaaaact ccagttacac ccgatgcaaa
     1261 cattgttgaa cttgcttcaa aacaacttaa tttagaaccc actacagagc ttgctattaa
     1321 tatagccgat aaagatgaga gtaaaagcat agcttatact aaaaccttgc ttgaaaaaga
     1381 ggatatagaa acgagtgaag aaaatatatt tattgcagca gcttgtaaag aaaaaggtat
     1441 agcattttta aaaggagagg caaaggtaaa tatacgcaaa ttagctagca tgccaaagcc
     1501 tatgagtgta gatgaaaaca aatttactgt agctgtaaat ggtaataaat atcatgtgga
     1561 agtgagttat ggttttgata aagatgttaa tgttaagagt gtaaaaaaag tagaagaaaa
     1621 taaaaatatt atttcttcaa attcaacaag ttctgtcgat gctgaaaatg aaattttagc
     1681 aggtatttca ggtaatgtct ttaaaattta tgttaacgaa ggcgaggaag taaaatcagg
     1741 tcaagctatc atggttttag aagcaatgaa gatggagatt gaggttaatg ccccaaaaga
     1801 tggaattatt ttagagcttt gtattaaaat aggtgatact gttaatgaag gcgaagtatt
     1861 agctatttac aagaattaaa gtgagggaaa aatgaaaaaa tttgataagt taggtttgga
     1921 taatataaag gaaatttttc ataatttaag ttatgatgaa ttaaatgctc atgaaaaagc
     1981 aaataatgaa ggtttaagca cggataatga tactttttgt gtagatacag ggatttttac
     2041 aggtagaagt cctaaagata aatattttgt aaaacaagat ccatctagta aatatatagc
     2101 ttggggaaag gtaaatcagc ctattacaaa agaattattt gataaacttt taactaaagc
     2161 aaagcaagaa ttaagcggaa agaaaattta tgttcaagat gttttttgcg gtgcttcttt
     2221 gcaaagtcgc aaagcagtaa gatttgttac tgaaattgca tggcaagcgc attttgttaa
     2281 aaatatgttt attcgcccaa gtcaagagga acttgagaat tttaaagcag attttattgt
     2341 ttataatgct tgcaaatgca tcaatgaaga ttacaaacaa gatggtttaa attcagaggt
     2401 ttttgtgatc tttaatgttg aagaaaatat agcggttatt ggtggaactt ggtatggtgg
     2461 agaaatgaaa aaaggtattt tttctatgat gaattattgg ttgccactag aaaataaact
     2521 ttctatgcat tgtagtgcaa atgtcggaga aaaagacgat gtggcacttt tctttggact
     2581 tagcggtaca ggaaaaacta cgctttcaac cgatccaaaa agaagactca taggtgatga
     2641 tgagcatggc tgggatgatg aaggtgtgtt taattttgag ggcggttgct atgcaaaaac
     2701 aatcaatctt gatcctgaat atgagcctga aatttatgga gccattaaaa gaaatgcact
     2761 tttagaaaat gtagttttaa gagctgataa gagtgttgat tatgctgatg cctcaaaaac
     2821 agaaaacacg agagtttctt atcctataga gcatattgaa aatcatgagc ctagtctaaa
     2881 agcagggcat ccaaaaaata ttatattttt aagtgcagat gcttttggaa ttttaccccc
     2941 ggtgagcaaa ctaagcaaag agcaggctat gtattatttt ttaagtggct atacagcaaa
     3001 agtagctgga actgagcgcg gtataacaga gcctcaagca actttttcag cttgttttgg
     3061 agaacctttt atgcctttac atccaacggt ttatgcgaga ttgcttggtg aaaagattga
     3121 aaaacatgaa gttaatgttt atcttgttaa tacgggttgg agtggcggaa gctacggtgt
     3181 gggtaaaaga atgagcatta aggctactag ggcttgcatt aatgctattc tagatggaag
     3241 tattacaaaa tgcgaatttg aaaattttga agtgtttgat ttagctattc caaaagcttt
     3301 agaaggtgta gaaagtgtac ttttaaatcc tataaatact tggttagata aaaatgctta
     3361 tattgcaaca agagataaat tagcacatat gtttatacaa aattttaaac gttatgaaga
     3421 tgtcaaagaa ggcattgaat ttagcaaatt tggaccaaaa atttaaggca tttaaatgaa
     3481 aaatgaaatg tggtcaggac gttttagtga tgcaagtgat gagcttttaa aagaatttaa
     3541 tgcaagttta aatgtagata aaactttgtt caatgaagat atacaaggtt ctatagcaca
     3601 cgctacaatg cttgaaagtt gtggtatttt aaaaaaagaa gaattagatg ctattataaa
     3661 aggtttagag caggttagaa gtgaaataga gcaaggtaaa tttatttttg atattaaaga
     3721 tgaagatatt catatggccg tagaaaagcg tttaagcgag attataggta gtgaaattgg
     3781 tggaagactt catactgcaa gaagtagaaa tgatcaagtg gctactgatt ttaaactttt
     3841 tgtcaaaaaa tctcatattg aacttataaa gcttttaaaa gaattgattc aaaccatgct
     3901 cgaacatgct aaagtgcata aaaaaactat tatgccaagt tttacacatt tacagcacgc
     3961 tcagcctgtg agtttttctt tttatatttt agcttatgct tttatgttaa tgcgagatat
     4021 taagcgtttg caaaatagcc tagaactcgc agacttttcg ccacttggat cttgtgcatg
     4081 tgcaggaaca agctatagaa ccaatcgtga gttgagtgct gaaattttag gatttaaaga
     4141 tattatgcta aatgctatgg atggagtgag tgatagggat tttgctcttg atttgcttta
     4201 tgatatagca gttattttta cacacacatc aagactttgc gaagaaatga tcttattttc
     4261 aagttcggag ttttctttta taaccataag tgatagcttt tcaacaggaa gttctattat
     4321 gcctcagaaa aaaaatcctg atgtttgtga gcttatacgt ggaaaaacag ggcgtgttta
     4381 tggaaatttg atttctcttt taactataat gaaagcttta cctttagcct ataataaaga
     4441 tatgcaagaa gataaagaag ggatttttga tagtgtaaaa accgctaaag atagcttaat
     4501 catcttaaat gcaatgctaa aagaaataca aattaataaa gaaaatatgc ttaatgcttg
     4561 taaaaaaggt catttattgg ctaccgattt ggcagattat ttggtgcgtg aaaaaaatat
     4621 tccttttaga aaagcacatt ttatagtggg aaatgttgtt gcacaagctg aagcacaagg
     4681 tattgatata agtgaaatta aagatctttc aaaaatagat cctgtatttg atgaaaaagc
     4741 tatggaactt ttaaattttg aattttcttt aaattctaag caaagtgaag gctcaagttc
     4801 tattgcaagc gtagaaaagc aaattcaaat tttggaaggt tttattcaaa atttataaat
     4861 attgtttagg ctattttgcc taaacattga atctaaagtg cattacatcg ccgtctaaaa
     4921 cgatatagtc ttttccttca aggcgtagct ttcctgcttc tttggcgcca ttttcgcctt
     4981 tgtattggat atagtcttca taggaaataa cttcagcttt tataaagcct ttttcaaagt
     5041 cattatgaat cacgcttgct gcttttggtg ctttccagcc ttttttgatt gtccaagaac
     5101 gcacttcaac tacaccagcg gtaaaataac tgatcagtcc aagcttagca aaagcagtgc
     5161 gtatgatttg atcaagaccg ctttcgttaa ctcctagaga gcttaaaaat tcatgacttt
     5221 cttcatcgct taatcctact aattcttctt cgatttttgc acaaagcttg ataacttcat
     5281 gatcattttt tttagcatat tcttttaaag cttttacata atcattatct tcactaatac
     5341 cattttcatc aacatttgca ccataaatca cctctttagc agaaagcagt cttaattcct
     5401 tgattagggc ttgataaatt tcgctttcct tttcaggata agaacttgca gctaagcctt
     5461 tgtttaaatg atcaagtaag gaatttgcaa gttcgagact ttctttggca cccttttgat
     5521 tggctttggc ttctttggtg agtttttcta tttttttact cagttgctca atatctgcta
     5581 aaataagctc tgtattgata atttctacat cacgtaaagg atcaactcca ccttcaacat
     5641 gggtaatatt ttcttcatca aaacaacgta ctatatgcaa aataacctca gtttcacgta
     5701 tatttgaaag aaatttattt cccaagcctt cgcctttact tgcgccttta acaagtccag
     5761 cgatatctac aaattctatt aaagaatgca taattctttc aggttttact attttagcaa
     5821 gttcattaag tcttaaatca ggaacttcaa ccatggcttt attaggctct atggtgcaga
     5881 aaggatagtt tgcactttgg gcattttgtg ctttagttaa agcattaaaa gttgttgatt
     5941 tgccaacatt tggaagtcct actataccta cgcttaaact catttagctt tccttaaaat
     6001 ttgaattaaa taattaacac acattctaac tccagctcca cttgcgccaa aactagaata
     6061 tccccaagat ttttctgtat aagcaggtcc tgctatgtca agatgtagcc atttatcttt
     6121 atattcttta cgaataaatt tatctaaaaa taaccctgcg gtaattgcac ctccgtagcg
     6181 actagaggca gtattactaa catcggcaat atttgatttt ataagttctc ttaagtgagg
     6241 gttgaaatgt aagattgtgg tatattctcc gcttttttta gagcttagat aaaaatcatt
     6301 ttgcaattcc tcattatttc ccataatagc acttgtaaat tctccaagtc ctacaacaca
     6361 agctccagta agagttgcca tatcgataag taaatcaggt tttaaatcct gtgcaaaaga
     6421 aagacaatca gctaaaacca agcgtccttc tgcatctgta tttcttacct ctatgcttac
     6481 accttcacga ctgattaaca catcatcagg cttataagca ttgccgccta tcatattttc
     6541 agttgcgccc aaaatgcaat gcacttctaa atctaaagca agttcagcta cggcttttat
     6601 gattcccatt actgctgctg caccgctttt atcagctttc attgtaagca taaaatcagc
     6661 tggttttaag cttaatccac cgctatcgta agttaagcct tttccaacaa atacaacacg
     6721 tttttttgca tttttggctt tatagcttag atgaatgagg cgtggtgggt gtatcgaggc
     6781 gcgatttacc gctaaaaagg cattcatttt ttctttggct aagaattttt catcataaat
     6841 tttacaaata atgtttttat tttctttagc taaattttgc gcatcttctg ccatttttaa
     6901 aggggtgtaa atttcaggaa tttcattgac tatattttta gtaaaatttg tagcattagc
     6961 taaaatttct ccacgctcta aacctatctt agcttcatct ttattaaatt tcttaccatt
     7021 taattcttcg cttgaaataa taaatttttc caaagtactt gtttttttct cgcttttata
     7081 tttgtcaaat ttataagctc caaaaagtac gccttcaact aaagatgcaa aacttctaac
     7141 tacacaatct cctattatgc taggaagttt tacgctttta atattaagtt tctcaagagt
     7201 tttatatgct gtgcaaagac ttaatcttat atcctcataa gcaagacttt taagctctaa
     7261 ataaagcttt ttattgttta agtctaataa tgcaccttcg cctttgtaat tattaagttt
     7321 aaaaaaatct ttttctttgt taaaaatttt taaattttta tcctgtataa aaacaagttc
     7381 aaagtctgct tttatagcat ctagtttttt atcgtttaat tcaaatttca tgattttttc
     7441 cttttatctt taagtatagc tttttccatt tgtttaaaac caaataataa aagggataaa
     7501 aaagctataa taataatggc tgcataatac caatgttctt cagcccaagt caccatcttc
     7561 caaatttgtt ctccaaaata ccaagctaaa agtatagtga ttgatgccca aacccaagca
     7621 ctaaaaagat tgataatagc aaattttttt gcactataac gcgtgattcc tatactcata
     7681 ggtataatgg ttctaaaacc atacatatag cgttgtataa aaataatagg ccaaccaaaa
     7741 cgttgtaaaa gtaggtgtgc tactgcaaat ttacgccttt gagtttttaa ttttttttgt
     7801 atgtagcgtt tattatatct tcctatatag aaataaattt gatcacctac aaaaccacca
     7861 agtcctgcta taaatataac aaaacctaaa tttacatgtc cttgatgagc aaaaatacct
     7921 gctaaaatta aagctaactc tccttctaaa atgcaccata aaaaaataat aatataagct
     7981 agatctttgt attggtaaag taaatttttt aaaaattctt ccatttgtac ctttctatag
     8041 ttttaaattt ctaaaacact ataaactgaa gtaagttttt caagtttatt tgctccattt
     8101 aaatctttaa gattcattaa aaaacaagct tcaacacatt tagctccagc tttttgaatg
     8161 agttcatatg aagctatagc tgttccgcca gttgctatta aatcatctac aagtaaaact
     8221 cttgcatttt gaatattttt aaatgcatct ttatgaagtt ctactttatc gctgccatat
     8281 tcaagatcgt attcgcagct aaaggtttca aaagggagtt ttccaggttt tctaataggc
     8341 acaaaaggaa gattaagttt tgcacaaatc atagatgcaa agataaatcc tctgctttct
     8401 gttcctgcta tgaagtctag attgtaatct ttgtagcgtt cttttaaatg tctaagtaga
     8461 aaatttaaag cttctttgtt atttagtaga gtggtgatat ctctaaaaat aattcctttt
     8521 tttggaaaat caggaataat cctaatgcta tcaagcagat attttttttc ttcttgtgtt
     8581 agttttatca taataatgcc tcgatttttg cttctaattc tttaattctt tgtcttagtt
     8641 tgtcattttc caagcgatat tgagaatttc tggttcttaa agatgtaagg tctgctttga
     8701 ttttattaag ctcttctgtg agtatatcta tatttccaag gcttctttga agttgaattt
     8761 gtagttttct aatgacaatc tcagtatcat caagattgtt tttgataaaa tcttttgatg
     8821 ttttttcttt attaagtaga gttttatagt aaaacaacat tacaataaga tagatagttg
     8881 cacaaatcaa tatagttaaa acaagccagt ttgtaaacat tatattttta cctcaatttt
     8941 ttgaattctt tgcatatgtc tcccttcttc aaaaggagtt tgaatgaatt tttctataat
     9001 atctatagct aattcaaccc caattaatct tccgcctaat gccaaaacat tggcatcatt
     9061 atgccttctt gcaagttctg cacttaagct ttcgtggcat aatgcacaac gaatgttttt
     9121 atgacgattt gctgcaatag aaattccaat tccacttcca caaataagaa tgccaaagct
     9181 ccgtttgttt attttttcgg caagtaaatg cgcataatca ggataatcgc agcttgcgca
     9241 agtgtttgtt cctaaatcgt taaaaattat atttttttct tttaaaaata cgcaaatttt
     9301 ttcttttaat tcaaaaccag catgatcact agcaatataa attttttccc taagcattgg
     9361 tttcctaaat tactatataa aataagataa aaacctaatc ttatcatatt aaatcataaa
     9421 aacagctttt ctttgtttta aaaataagct ttatttttct ttatatatgt tagaatcatg
     9481 tgacaagaaa aataaaattt caataaatta agaggagaag aaagtgaagc tcatactcat
     9541 aggatcttca acaggtggtc ctaatcagct taaatttctt ttaaaggata ttgatgtaaa
     9601 aaatacttgt gtagttatag ctcagcacat gagtgccagt tttattccat cttttgtggg
     9661 gcaatttaat aaagaagctt ttagtgaagt gtgcttattg aacgataaag agatattaag
     9721 caataaaatt tatatttgcc ctaaaaatac tattttatct ggaaatttaa atattgtagc
     9781 cgcttggcaa gatgtggctt caagctttaa accgagtgtg gatttacttt ttcattccgc
     9841 tgtttctttg gcaaaaacaa ataaaatact tgctattatt ttaacgggca tgggagatga
     9901 tggcgcaaaa ggtttatttg agctttataa aacaggagtt agatgtttat gtgagaatga
     9961 agcagatagc gtcgtttatg gtatgccaaa aagagcaaaa gatatgaatc cgcatttaaa
    10021 acctatgagc ttaaaagaaa ttaaaaaaga aattgtaaat tttattgatc aggattaata
    10081 aaaggaaaat tgcatggaaa aaaaaataac tcctagcgaa ttggaactta atgaatttat
    10141 a
//
LOCUS       DAQSLY010000055        10040 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.055, whole genome shotgun sequence.
ACCESSION   DAQSLY010000055 DAQSLY010000000
VERSION     DAQSLY010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10040
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.055"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..1528)
                     /gene="recJ"
                     /locus_tag="R2H98_001069"
     CDS             complement(<1..1528)
                     /gene="recJ"
                     /locus_tag="R2H98_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEE9023961.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     F"
     gene            complement(1515..3146)
                     /locus_tag="R2H98_001070"
     CDS             complement(1515..3146)
                     /locus_tag="R2H98_001070"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEE9023962.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            3266..3889
                     /locus_tag="R2H98_001071"
     CDS             3266..3889
                     /locus_tag="R2H98_001071"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEE9023963.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            4009..5394
                     /locus_tag="R2H98_001072"
     CDS             4009..5394
                     /locus_tag="R2H98_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEE9023964.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(5433..7802)
                     /locus_tag="R2H98_001073"
     CDS             complement(5433..7802)
                     /locus_tag="R2H98_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEE9023965.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVAIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(7818..9146)
                     /locus_tag="R2H98_001074"
     CDS             complement(7818..9146)
                     /locus_tag="R2H98_001074"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEE9023966.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDVIFKRTFK"
     gene            9224..>10040
                     /locus_tag="R2H98_001075"
     CDS             9224..>10040
                     /locus_tag="R2H98_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEE9023967.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIIYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSY"
BASE COUNT         3307 a         1885 c         1357 g         3491 t
ORIGIN      
        1 taaattcatt cttagaaata cttccaagca aagaaatatt ttgattcaat tctggctctt
       61 tatcaaaatt aaaaaataaa gcttctatgg ttttattttc cttagttaaa acaagcttta
      121 agtgtttttc atctttacct agaagttttt tattttttac acaaagattt tctaaaacaa
      181 aaaaaggtcg tggattttta tgtccaaaag gttcaaaaga ttctaaaatt tcaagcattt
      241 caaaatcaat ttcgctaggt tctaagattc ctaaaatttc atctgtatcc aaaaattcac
      301 tttcagaaat ttgcgaacat tcttttttga ttttattttt aaattgttca aaattttcag
      361 agtttaaact gattccagca gcacctttat gaccaccata attgcttaat atagaatttg
      421 tcttagaaat taaagctaaa atatcaatct tgccaacact tcttgcgctg ccttttaagt
      481 gttcttcatt ttgagaaaat acaaaagcag gtttattaaa atgtttagct aaacgacttg
      541 ccacaatccc taaaacacct tcatgccaat ttaaacccga taccacaata caagaatcgt
      601 tttcatcgat ttgatttaaa ctatcttcaa aaagctgttt ttcttcatct ttacgacttt
      661 cattaaaact aacaatttgc tctagatatt ctaaagcttt attaaaatct ttagtgtgta
      721 aaaattcata agaaatactt gcatcatcca ttcttccagc actatttata agcggagcaa
      781 ttaaaaatcc tatattatca agagcaaatt tatccttttg ataataatgc ttaatagccc
      841 taaaagcagc ccttttagat ttgttaatat gatctatgcc acgccttact aaagcacgat
      901 ttaaatctct aagttccatc atatctgcaa caattgcaat cgccaaaagt tctaaaaatt
      961 tacacatgtc atatttaagc ttgcacacct cttttaaagc cgctatcaaa taccatgcga
     1021 cttgagctcc acaaatttca atttctggaa aatcacaatc tttttgcttt ggattgataa
     1081 tggcaaaagc atcaggtaaa acatcttgag gcatatgatg atcagtgata atcaaatcta
     1141 tatttttttc tttacagagt ttggctgctt caagagcagc tattccatta tctactgtta
     1201 ttattaaatt tacatcaagt tcgttgatga tctcagcatt taatccatat ccatctttaa
     1261 aacgatttgg aattcttata atataatcaa aacctatatc atcgaaaaat tctgccataa
     1321 taacacaaga aatgattcca tcaacatcat aatctcctac tatggcgact ttctcatttt
     1381 tttctacagc ttctttgatg cgattagctg ctttatatgc atcctttaaa cagcatggca
     1441 aaggcagatc acaaagtttg gtatgcaaat ctttttcaaa gcgtgaagcc aaaatttttt
     1501 taatttcatt tttattaatt atcttcatag tttatagctg ccttgataaa actgcaaatc
     1561 acaggattaa catgctcaag tcttgatgta aattctggat gaaactgcac agccaagaaa
     1621 aaaggatgac agttaagctc aactgcttca atcaatcctt tgctttcacc acttacaatc
     1681 aaaccgtgtt tttcaaaatc tgctctatat tttggatttg cttcatagcg atgacgatgg
     1741 cgttctttta cactctttac ttcattataa accttagcca aaagggattt ttccttgata
     1801 tcacatttat aagcccctaa acgcatagtt ccacctaaag gagtttttgc agtacgaatt
     1861 tgtttttctc catttgtatc cataaattca tcaatcaaat aaaccacagg attttggcat
     1921 ttttcattaa attcacttga atttgcatct ttaagtttta atacatttct agcaaattcc
     1981 accaaagcaa gctgcatacc taaacaaatt cctaaaaaag gaattttatt ttctcttgcg
     2041 tattgaatgg cttttatctt accttctaca ccacgatatc caaatccccc agcaaccaaa
     2101 attccactca catctttaaa tacttcagaa ctttccatat tttcaagttt ttcactatct
     2161 acccatttta actccacttt agtatctagg gctgcacctg cgtgtataat agcttcagta
     2221 aggcttttat aactttcttt taaatccaca tatttgccta caaaagcgat tttaacttca
     2281 ttgcttggag ctataactct ttttaccaaa gagtcccaat tttccatatt aggttttaaa
     2341 tttttcaaat ccaaaatttc agcaataggg cttaaaatat cttgctttaa aaaattaagt
     2401 ggaatttgat aaatactagc cgcatcaaca ctttctatca cgcaattttt ttccaccccg
     2461 caagaaatag caattttatc ttttaaatct ctatcaagag ctttttcact acgacaaata
     2521 atcatatcag gactaatgcc tatgcgcctt aactcgccta cactatgttg agttggcttt
     2581 gtttttaatt cccctgcagc cttaataaaa ggtactagag taagatgaat attcatagca
     2641 ttatttttac ccacttccaa acgcaaagca cgaatagctt ctaaaaaagg caagccttct
     2701 atatccccaa cagttccgcc tatttcaacg ataagtatat ctttgccttc tcctgctttt
     2761 ttaatgcgat ctttgatttc tcctactata tgagggataa cttgaatggt tttgccaaga
     2821 tattctccac gcctttcttt ttcaatcaca ctttgataaa cccgtcctgt agtgaagtta
     2881 ttatcttgag ataaactctc atccaaaaaa cgctcataat gccccaaatc aagatccgtt
     2941 tctgctccat catcagttac aaaaacctct ccatgctcaa aaggactcat agtgcctgga
     3001 tcaacattga tataaggatc agcttttaaa atactcactt taagccctga attttttaaa
     3061 agtgttgcga tagaagcagc ggctatccct ttacccaaag aacttaaaac tccacctgtt
     3121 acaaaaatat attttgtttg tttcattgat aataagcctt atttttttat ctaattatag
     3181 cttgataaaa ctttttattt cattagaatt ttaagtaaaa aatgcaagaa ttacaaaaaa
     3241 tatttttatc aaaaaaggaa taagcatgca aatcacttta ctttttcaca ctccattatc
     3301 tgtttgttct catgcaacaa gaacttgttg gcaaagcttt gaaaaaggcg attgcggtgg
     3361 cgaaaaagat aaagaactta tcgatcgcgt gggcaacaaa ttcaaacacg cttcaacctt
     3421 agaacatcta aactatactt tttatataca aggaatttca agagcttgct tacaagaagt
     3481 tgcaagacac cgtcacacta gtcctagtgt aaaaagcacg cgttatacct taaaagaact
     3541 tcgcaatgaa gctgaattta aaataggaga ttttgaaaat gcaagccgtt atcttgtgct
     3601 ttgtggcaat gaagaggttg ataacgcaag cattaaagcc ttagaaaatt tacgcactat
     3661 tttacaaaaa agcattagtc tagatatagc caaatactgc ttaccagaaa gctataaaac
     3721 tgaacttaca ctaacgatta atgcaagaag tttgcagaat ttcatttctt tgcgtagttc
     3781 aaaatcagct ctttgggaga ttagaaattt agcaaatgct ttatttgaag ccttgccaca
     3841 agaacacaaa tttatatttg aacattgctt acataaagat atagaataaa tcatactaat
     3901 tttatcttat ttaaaatatt gttatgctac tatttataaa atcaagcttt acgcaagtat
     3961 attttcatat accttgtgct tgattatagt ttcttataag gactttttat ggataaacaa
     4021 ttttttcaag attttctaat gctttcacaa gctcatacta taactactct tgctatgctt
     4081 tgtgttgttt tttacgcatt aaaaaaaatg cgggatataa aaatcaattt ttctcttcgc
     4141 atgctatttg cgcttttaat gggtttgggg tttggttttg ctttgcaata tttggcaaat
     4201 tttccagatg ctaaagaagc aagtaatatt ctttggtata gcgaaacaaa acattggttt
     4261 gcatttgtaa gttctgtttt tgtagctttt ataaaaatgc tggttgttcc tcttgtaagc
     4321 atttgcatta taaaagtaat tatagaaatt gataaaaata tcaaaatatc ctccttgctt
     4381 ggaataagtc ttttttggat actctttagc acagccatag ctgcaacctt gggtatattt
     4441 ttaggttata gttttgattt aggaagtaat tttgctatat atgaaggaaa taaacaaatt
     4501 cgcgaaattc aaactttttc aaatattata ctagggctaa tacctagcaa catcattgca
     4561 gctattaata aagaaaatat tatagctatt gttatttttt ctttttttat aggaattagt
     4621 gctaaaaaaa tttctaaaaa agaagagtat gaacaagcct ttaaaagttt tcataatttt
     4681 atcctaacct tttataatat tatgatgaac atgactgcta cagttattag atttatgcct
     4741 tatgctgtag tttgtatgat ggctaatgtg cttttaagca atggttttga agctatcaaa
     4801 acagctggac tttttataat gcttatttat atagctatgt taataatgtt cggggtgcat
     4861 tttttacttc ttgcttcaca agggctaaac cctataaaat atgcaaaaaa agcatttcct
     4921 gtatggttat ttgcatttag ctcaagatct tctttgggca ctttgcctat gactacttca
     4981 actttgcaaa ataaatttgg agttaattca gctatagcta attttgtagc atctataggt
     5041 acaacaacag gacttaatgg ttgtgcggga tattttccag ctttagcggc agtttttgta
     5101 gcttttgcta cacatacaca tattgatttt acatttgctt taatgatagt tttggtagct
     5161 gttattggat ccttgggtat agctggagta cctggaagtg caactatggc agcttctatt
     5221 atgctagcag ggattggatt tggtaataat tttgtcatgc taagtttgat tttagctata
     5281 gatcctatta tagatatggc aagaacagca agtaatgtct caggagctat gacttcggca
     5341 ctttgtactg caaaaaatct aaaagcccta gataaagaaa tttacaattc ttaatctctt
     5401 aaaacccaat atttttcatt gggttttagt atttattggc aaccttcaca ttctatgcta
     5461 cgatctgcaa cattgacttt ttcactatca gggctttcgc ttcttagata ataagtagat
     5521 tttactccaa gctcccaagc gagttgataa atttcattta aatatccccc acttgcttta
     5581 tcaagcgata aaaagatatt taaactctgc ccttgatcga tccatttacc acgcacagca
     5641 gcagccttta caagaatttt ttgatcaagt tcgtaggctg gagtatagta ttgccaagta
     5701 tcaaggctta aatttggcac aacaacaggt atcataccac ttaaattttg ttcaaaccac
     5761 tttcttttgt aaacaggttc tatagtctgc gtagtaccca ccaaaataga aatagaagaa
     5821 gtaggtgcaa tggccatcaa ataaccattt ctcataccat cttttttaac tttttctcta
     5881 agtttaaccc agtcgcattc actttgatca aataagccct ctcttaaagt taaagcttta
     5941 gccttaggac ttgctacatc aataggaaaa atccccttgc tccaatttga tccttcaaaa
     6001 tcctcataag aacctttttc aagagctaaa tttgaactcg cattaatagc ctcaaagcta
     6061 atttgttcca taatctcatc gattttattt aaatgctcat cgcttcccca ataaatctta
     6121 gcttcagcaa gcatttgtgc ctcacccatg actccaagac ctatggcgcg agattttaaa
     6181 tttgtatctt ttacttttct atgaggataa aaatttaaat ctatcacatt atcaagcata
     6241 cgaatagccg ttggcacaac acgctctata tcttctttag tatatacttt gctaagattt
     6301 atacttgcta gattacaaac ggctgttttt ccatcatttt tatatttttc tactatataa
     6361 actttattac catcaatact atctaaagtt gagatttttt tggctggttt ttcatatccc
     6421 ccatcgatcg caactttttg ttcttcatca aaatgaagtt catctccatt ttcaaaaact
     6481 actttaattt gataataatt tggctcggta ttttgaaaaa tttcagtaca taaatttgaa
     6541 cttctaataa ttcctacatg agcatttgga tttgctctat tagcactatc cttaaaacat
     6601 aaaaatggca agcctgtttc aaaataattt agcaaaattt tcttccaaag ctctttagct
     6661 tctacgattt ctttggtaat gctttcatct ttttcatatt cttcatagcg tttttcaaaa
     6721 gcctcgccat ataaatcaca taaatctgct gtatctgcag gatcaaaaag agtccattta
     6781 tcattagctc ttactctctt cataaaaaga tcattgatcc ataaagcagg gaaaagttca
     6841 tgagcacggc gtctttcttc acctgaattt ttacgcaaat caataaaatc acttatatcc
     6901 atgtgccaag gttctatata aacagctata gctccttttc tggttcctag ctgatctact
     6961 gccacggcaa tatcattagt aattttcaag aaaggtataa tccctcctgc ggcattttta
     7021 tgcccatcta tgcttccacc catagcacgc actttagacc aatcccaacc tataccgcca
     7081 ccaaatttag aaagcaaagc catttcttgg taagaatcaa aaataccttc aatattatca
     7141 ggggttgatc ctatataaca agaactaagc tgatggcgcg ttgttcttgc attagataaa
     7201 gtcggagttg caagcatgag ttcaaattta gaaattaaat cataaaattt cttcgcccat
     7261 tcttgaggat taaattcatt ctgcgctaaa aacatcgcaa tggccataaa catttgttga
     7321 ggaagttcta taggcatacc tttactatct ttaatcaagt atctatcata taaagtttta
     7381 ataccaagat aagtaaattg catatcgcgt tcaggtttaa tataagcatt taaatcatct
     7441 aaatcgtatt tttctttaag accaagtaag attcttcctt ctttttcgcc cttttcaaaa
     7501 tactcacgca aatgattata gcgattcata ccattaactt ttttatataa atcaaataaa
     7561 aaaagtctag ctgcaacaaa ggtccaattt ggacaatcaa tatctatctt atctactgca
     7621 gttttaatta aagttttttg aatttcttca gttgaaattc catcacgaaa ttgaatcttt
     7681 gcatcgagtt caagttcgct taaattcaca ccttctaaat cttttacagc atcagaggtg
     7741 cattttttga tcttagaaac atccaattct tctgtacgac catttctttt aataactttc
     7801 attgccttcc ttgcttttta tttaaatgtt cttttaaaaa ttacatcaac attttttgta
     7861 tagtagttat aatcgaaaca ttttcttaca tcctcttcgc tcaaactttt tcttaaatct
     7921 tcatcgctta aaagcgctaa caaaaacaaa ctttcatttt tttcattgat agcagcctta
     7981 ccattttgca aatctgccca aactttcata gcgtttcttt gaactatttt ataagcttct
     8041 tcacgactaa tgcctttaaa tggaagctct aaaagcaccc tccctgaaaa tacaagcccg
     8101 cctgtaagat ttaaattttt catcatattt tcaggataaa ctaaaagctt atcaatcaaa
     8161 tttgtaagac gcataagcat aaaatcagcc gtgataaaag catcaggcaa aataaatctt
     8221 tcaacactag aatgagatat atctctttca tgccaaagtg caacattttc taaagctgga
     8281 gttacaaaag atctaagcac acgacaaagc cctgtgatat tttcacttaa aacaggattt
     8341 cttttatgtg gcatagctga acttcctttt tgtcctacac taaaatactc ttcagcctca
     8401 taaacttcag ttctttgaaa atgtcttatc gctacagcga tttgctcaca acttgaagct
     8461 aaaattgcaa tagcagaaat aacttgagca taacgatctc tttggatcac ttgatttgaa
     8521 acaggggcag ctttaagacc taaattttta caaacttctt cttcaaattc taaaggagca
     8581 tgagcaaaat ttcccattgc accactgatt tttccatagc ttatcacttc ttttgcatgt
     8641 tctaaaagct cttttgcatg caaaatttca tcataccaaa tagctaacac taaaccaaaa
     8701 gtgataggct ctccatgaat tccatgactt cttcctacca ttaaggtatt tttatgctcc
     8761 aaagcacgct ttttgatcac ttctaaaagc aaagaaacat cttctaaaat aagctccaaa
     8821 ctctctttta tctgtaaagc aacagccgta tctatacaat cagaacttgt cattgcataa
     8881 tgcacaaaac gactctcttc tcccaaactt tcacttacac ttgtaagaaa agcgataaca
     8941 tcgtgttttg tggttttttc tatttcgtct attcttgcaa tatcaaattt tgcattttta
     9001 agaatttttt cgcagtctgt gtcattaatg agaccgagtt tattccaagc ttttacagcg
     9061 gctaattcta cttttaacca cgcatcgtat tttgcttgca tgtcccattt tttagccatg
     9121 atttctctgc tatatctttc aaccatcttt gaaacctttt tagctataat tttatatttt
     9181 aaaaaacaga aattatatca aattatccta agaaagttat taaatggctt acataaaaat
     9241 aaaactctca aataatggaa aaaaggcatt tcaagtcctt atggaaaatt taaaaattag
     9301 cataaatgaa gcacaaaaac tcatagacaa aaaaagactt ttttgcgatg gaattttagt
     9361 agaagaaaag aatgaaattt taaatggttt agtagagctt ataatctatg aaaacaatcc
     9421 caaaggagta gaaattgtct ttgaaaatga agactttgcc atacttgaaa aagaaagtgg
     9481 gatcttaagt catccaaatg gtagacattg taaatacagt cttagtgatg aaatttggca
     9541 tctttgggga aaagaagctt gcgtagcaca cagacttgat aaagaaacga gcggacttat
     9601 acttgtagcc aaaaataaaa aagctcaaat tgatcttaaa gctttgtttg aaaaaaaact
     9661 ggttcaaaaa gaataccttg ctctagctaa cggaaaaata gaagaaaatt ttataattga
     9721 taaagccata aatttagcca aaaactacga tgatgtaaaa acaaggatgc aaatttgtaa
     9781 ggaaggaaaa caagctatca ctgagtttga aattttagaa tactttccta aaatcaacgc
     9841 tactctttta ctctgcaaac ccttaacagg cagacaacac caaataagag tgcatttaca
     9901 ctataaaaat cataccattt taggcgatcc actttatggg cttagcaaag aacaaatcga
     9961 aagtatttta gatgaaaaat taacccccaa agaacgctta aaacttacag gtgccttgcg
    10021 tttgtgtttg cattcttatc
//
LOCUS       DAQSLY010000056         9986 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.056, whole genome shotgun sequence.
ACCESSION   DAQSLY010000056 DAQSLY010000000
VERSION     DAQSLY010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9986
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.056"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..382)
                     /locus_tag="R2H98_001076"
     CDS             complement(<1..382)
                     /locus_tag="R2H98_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEE9023968.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIK"
     gene            complement(384..1889)
                     /locus_tag="R2H98_001077"
     CDS             complement(384..1889)
                     /locus_tag="R2H98_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEE9023969.1"
                     /translation="MKKLKCISFHGGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLNEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(1886..2413)
                     /locus_tag="R2H98_001078"
     CDS             complement(1886..2413)
                     /locus_tag="R2H98_001078"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEE9023970.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(2449..3033)
                     /gene="clpP"
                     /locus_tag="R2H98_001079"
     CDS             complement(2449..3033)
                     /gene="clpP"
                     /locus_tag="R2H98_001079"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEE9023971.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(3033..4367)
                     /locus_tag="R2H98_001080"
     CDS             complement(3033..4367)
                     /locus_tag="R2H98_001080"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEE9023972.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RLGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            4510..5082
                     /gene="folE"
                     /locus_tag="R2H98_001081"
     CDS             4510..5082
                     /gene="folE"
                     /locus_tag="R2H98_001081"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEE9023973.1"
                     /translation="MQKKFEDCVKTILEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKDILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGIQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            5082..6467
                     /gene="fliI"
                     /locus_tag="R2H98_001082"
     CDS             5082..6467
                     /gene="fliI"
                     /locus_tag="R2H98_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEE9023974.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVTKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIIL
                     SRELTDFGIYPPVNIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDAPNTPLLPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(6470..7807)
                     /locus_tag="R2H98_001083"
     CDS             complement(6470..7807)
                     /locus_tag="R2H98_001083"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEE9023975.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYIVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(7809..8537)
                     /locus_tag="R2H98_001084"
     CDS             complement(7809..8537)
                     /locus_tag="R2H98_001084"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEE9023976.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQAQISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTIPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(8600..9781)
                     /locus_tag="R2H98_001085"
     CDS             complement(8600..9781)
                     /locus_tag="R2H98_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9023977.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGVKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLNEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDIGNADPNA
                     LNLAVSTLEAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(9781..>9986)
                     /locus_tag="R2H98_001086"
     CDS             complement(9781..>9986)
                     /locus_tag="R2H98_001086"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023978.1"
                     /translation="NNSYQAKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNL
                     SYDSLANPQLKINGSEFSNMDLN"
BASE COUNT         3222 a         1757 c         1414 g         3593 t
ORIGIN      
        1 attttataga cttttcaagc cccattccta taacttgttt tttattttct cttaattttt
       61 gaatgagtga agtataatca ctatcgcttg aaacaataac aaaaatatct atattttttt
      121 cataaaatat ggacataatt tcagtgatta aatacatatc gcttgagttt ttgttggctg
      181 caaaattaaa ttgttgcata gcgattaaag aatattcagc aatttgctct ctccaacctt
      241 gtatattttt ttgagtccaa tccccataaa tgcgtttaat gataacctct ccgtaatctg
      301 aagcgatatc aaaaatactt ttagcgtatt ttgcagggat attttctgca tctataaaga
      361 tagctatact tttattttcc attttaattc cttgctctaa agcttaaagc ttctaaaata
      421 tgggttttgc taatattaag actttgttct aaatccgcta tacttcttga aacttttaaa
      481 attttattaa gcgatcgcaa agaaagatta taacgtgaaa ttgctaaatc tagcgtatct
      541 ttggcatctt tttccaatac acaaaaacga cttaaatctt catcttttaa tttcccatta
      601 aattcttttt gcccccgttt tttactaaaa ataaaagctt gtaaaatttt ttcactcatt
      661 tctttagaac ttatactcgt tttatcatcc ttgctgatct catccatagc tacataaaga
      721 tcaatcctat ccataatagg agctgaaatg tgatttttgt attttttaat ctcattttca
      781 ctacaaacac aagaaagatt tttggagaat aaatttccac aaggacaagg attttgggca
      841 gctataaagc taaattttgt ttcataagtg attttagaat ttactcttga aatatgaatt
      901 ttatgatcct ctaaaggttc tcttaaactc tctatgattt gcttgttaaa atgtggaaat
      961 tcatcaaaaa acaatactcc accatttgca agtgcgactt ctccaattct agcatttttt
     1021 gttcctccgc caaaaatact tgctcttgta gaagtatgat gaggatgacg aaaagcacga
     1081 attttagtaa attcacaatc ttttgaatct aaagacatat aagcattttg cattaaaatt
     1141 tcatttaaac tttgaggagg catgatataa acaaggcgtt tagcacacat acttttacca
     1201 cttcctggac ttccttcaaa taagatatta tgcataccta aagcagctat catacaagct
     1261 cttttggctt tttcctgccc tttgatgtct ttaaaatcaa gtttaaaatc catattttgt
     1321 aaaaaaattt cattttctat ttgtaaaggg tttgcaaata aaggatgatt gtgagaaaaa
     1381 cgaaaatttt cataattttt ttctttaaaa aactctattg cttcatttaa attttcaagt
     1441 ccataaacct ctaaatttgg tatcatggaa gctttttgtg ctatactttt tggaacaacg
     1501 atcttagctt ttttaatttt agcagagaga aacaaaagca aagaaaaaag ctcatttgtg
     1561 cttttaatac ttccatcaag tcctaattct cctactacaa aaaagtcatc taattcttca
     1621 ttttgcaaaa ggattaataa agcgatagcc aaatcaaaat gcgacccctt ttttgggatg
     1681 cctgaaggac taagattgat agtgattttt ttagcaggaa aagcaaaatc acaacttaaa
     1741 agtgtggctt tgatgcgttc gacactttcc ttaatcgctg tacttgcaag ccctactatg
     1801 cttaaatttg gcaaacctct tgtaaaagtg gattctacct ctataatgtc taagcctcca
     1861 tgaaagctta tgcactttag ttttttcatt tctctttttt atgatttttc ttctttttct
     1921 taaattcttt atcgaatttt tgacgcttag caaaggaaat tttttctata aataaatgtc
     1981 catttaaatg atcattttcg tgttgaatag ccacagctaa aaaacctttt gcttcaagtt
     2041 ctttaaattc tccaaagcga tcttgatatt taagcaagat atgattatag cgtttcactt
     2101 cttcaaaaaa atctggcaca ctcaaacacc cttctgtaca agtgatcatt tcttcatcta
     2161 aaggaataat ttcaggattg ataatctcta gcaaatcttc ttttttttgt tcatcgtttt
     2221 catcaaaaat atttacaagt aaaacacgca aaggaatatc cacttgaata gctgctaaac
     2281 ctactccatt acttgctatc atagtttcat acatatcatc aagcaaggtg tgaagttctg
     2341 tatcaaattt atttacaatt tcagagttta aaaaaagtct aggattggga taggtgataa
     2401 tttttctaac cattaaaaaa cctttgtttt aaatgatctc caaagaaatc atttaaaact
     2461 tttttccaaa accttatcaa tcagcccata ttctttagct tcttgtgctg acatgaaaaa
     2521 atctctttct gtatcttttg ctatttttgc aactttttgc ttagtatttt ttgccaaaat
     2581 atcattaagt atagttttga gtcttaaaat ttctttggct tgaatttcaa tatctgtggc
     2641 ttgacctcta gctccaccta aaggttgatg aatcataata cgtgaattag gcaaagcaaa
     2701 acgttttcct tctgcgccac aactaagcaa aaatgctccc atagaagcag cttgtcctat
     2761 acaaatcgta caaacatcag gtttgatata gttcatagta tcataaatac taaaaccact
     2821 tgtaattaca ccacctggag aattgatata aagataaata tcttttgtag gatcttcagc
     2881 ttctaaaaaa agaagttgtg ctacgataga agcggcaagt tcatcatgaa tttcaccact
     2941 tagcataata attctatctt ttaaaaggcg tgaataaatg tcataacttc tttcaccacg
     3001 actagatttt tcaataacat aaggaataaa cattatttat cttctttctc ttttttgctc
     3061 actttttccg atttttctgt ttttggtata aaaatatcat taaaaagttt ttcttcaatt
     3121 aaagccattt tcacagcagg caaagctcct tgttttttat agttttctaa atgctctttt
     3181 ggattcatac catagcgata tgcttcaaaa taaatcgctt gaatcaattc ttgatcattt
     3241 acttcaatct tacgcaattt tgcaagttca tcaatgataa aagtaagttt tacacttttt
     3301 tgtgcttctt ctttaaaaga atcacgtttt tcttgatatt tttctttact tgctttaagc
     3361 tcttcaattt ctttttcgct aaaagtatta aaagccgcac gcatctgcat atcagtttct
     3421 tgttctacta tgcctttagg taaatcaaaa ttatattttt caatcaaagc atctgcaaat
     3481 ttgcctttta attcatcatt tacaagtttg aaaagttttt catttttgat ttgctctttt
     3541 aatttttcat ctaaaacttc aacactagct ttttcttctc ctggtaaaag ttttttaagc
     3601 atttcatcat caagttctgg aattttaagc tcttgaattt catgtagttt tactttaaat
     3661 actgcatctt tacccgctaa atgcgctgcg ccgtattctt tagggaaagt tactttgata
     3721 tctttttctt cacctatttt cattcccacc ataccatctt caaaacctgg aataaattgc
     3781 ttagaaccaa tttctaaaac ataattttca gctttaccac cttcaaaagc tttatcatct
     3841 acaaaacctt caaaatcaaa ttttgcaaaa tcaccttctt ttaaagctct ttttgttttt
     3901 atagcttcag gagtagcaaa acgctttaaa agttcatctt ttttctcatc aatttctttt
     3961 ttacttactt ttggagtttg atattcaggg atgagttttt cataaccctc aagtttgatt
     4021 tcaggtttaa aagaaagtat taattcagca ataatttctc catctttacg atcaaatttt
     4081 tcaaaatatg gctcacctac aagctcttta ttttcttttt taagttcttg taaagcgcta
     4141 tttacagcgg atttaaaaag attttgttct gcatcttgag tgagctctct ttcatatctt
     4201 ttaagtacgg cacttacagg aacttttcct agtctaaacc catccatttt tacactttta
     4261 gaagcttttt ttgctaaatt ttctacttca cttttgatca ttcctgaagg aatttttaca
     4321 ctagcagtcg cattaacaga atctagttgc tttgccttta cttccatagt tttttcctta
     4381 taaaataaaa tttgccttca atgatagcaa atttttcctt attacttgca taaaatttta
     4441 aagtaattta tgataaaatt gtaatattac attattatta aaatataaaa aatatttttg
     4501 gagaaaaatt tgcaaaaaaa atttgaagat tgtgttaaaa ccatacttga aattatagga
     4561 gaaaatccaa atcgtgaagg gcttattaaa acaccaaatc gtgtttttaa agcttatgaa
     4621 tttcttacta gtggttatac gcaaaatgtc aaagacattt taaatgatgc tttatttgaa
     4681 agctctaata atgaaatggt tttggtgcgt gatatagaat tttatagtct ttgcgaacat
     4741 catcttttac ctttttttgg gcgtgctcat gtagcctata tccctaataa aaaagtagta
     4801 ggtttaagca aaattccacg ccttgtagaa gtgtttgcaa gaagacttca aattcaagaa
     4861 caacttactg aacaaatcgc acaagcttta atggaaaatg ttgatgcaaa aggtgtgggt
     4921 gtagtcatag aagcaagaca tatgtgtgtt gaaatgcgtg gaatacaaaa agctaattcc
     4981 accactacaa cttcagcttt acgtggaatt ttcttaaaaa atgaaaaaac cagagaggaa
     5041 tttttttctc tcataaactc tgctaaacag gtaagatttt aatgaatctt gaaaaactac
     5101 gctccaaact tggtaaagaa aatttaagtg ctatctttgg agagattaca aaaatttctg
     5161 ctacgagtat agaaattcgt gggcttaaaa caggggttgg agatatagtg aagctagttt
     5221 ccaatgaaaa tgaaaattta aacactctag ctatggtcgt agaaatcaag gaacaattta
     5281 gctatttaag ccctttttct tttatagaag gtttcaaaat aggcgatcgt gctttcataa
     5341 gtgatgcagg tatgcaaata ggcgttagcg atgaactttt aggcagagta gtagatcctt
     5401 ttatgcgccc aaaagatggt aaaggagcta tagaagtaac caaatatatg cctataatgc
     5461 gtgcacctat tgatgccatg aaaagagggc ttatagaaga agtttttccc gtgggtgtta
     5521 aaaccataga cgcgctttta acttgtggtg taggacaaaa acttggtatt tttgcaggaa
     5581 gtggggtagg aaaatccact cttatgggaa tgatagttaa aaattccaaa gctcctataa
     5641 aagtagtggc actcatagga gaaagggggc gtgaaattcc tgaatttata caaaaaaatt
     5701 taggcggaaa gctcgatgat acagtgatta ttgttgctac aagtgatgat agtgctttga
     5761 tgcgtaaata cggtgctttt tgcgcaatga gtgtggcaga atactttaaa gaacagggca
     5821 aagatgtact ttttatcatg gatagtgtaa cgcgttttgc tatggcacaa agagaaattg
     5881 gactagctct tggagagcct cctacaacca aaggttatcc gccaagtgtt ttaagtcttt
     5941 tgcctcaact catggaaaga accggtaaag aagaaggtaa aggcactata acagcctttt
     6001 ttaccgtttt agtggatggt gatgatatga gcgatccaat cgccgatcaa agtcgttcta
     6061 tcttagatgg acacattatt ttaagtcgtg aattaacaga ctttggaatt tatcctcctg
     6121 ttaatataca aaactctgct tcaagggtga tgagtgacat tataagtcct gaacataaac
     6181 tttgggcaag aaaatttaag cgtttaaact cgcttttaaa agaaaatgaa gtattgcttc
     6241 gcatcggtgc ttatcagaaa ggaagtgata aagaacttga tgaagctatt tctaaaaaag
     6301 aatttatgca aaaattctta ggacaaaatc ctgaagaaag cttcgaattt aatcaaactt
     6361 tagagctttt aagtcaaatt gatgcaccaa atactccttt gctaccaact caaaatataa
     6421 atgtaggaag tgcaagtgca accttgccta atcctaattt aaaataaaat tatttaataa
     6481 aataatctcc atcaaaactg attaaagaat attttctttc atcgcctatg ctttgagtta
     6541 gctcttctat gcttaaaaaa cttagcgtat cagcttctac atattcacgc acttcttcag
     6601 catttttatt tgcgctgata agttcttcaa aagttggagt atctatacca taagtatcag
     6661 gaaatttgat ctcaggacaa gctatggcaa gatggatttt actcgctcct gcagcacgaa
     6721 gtaaggaaat tattttttta gaagtagtgc cacgcaccaa gctatcatca atgactacga
     6781 tttctttgcc ttctaaaact ttacgcatag gattaagctt taattttact tttaaatttc
     6841 taagctcttg agttggctct ataaaagttc ttcctacata atgatttctt actattgcca
     6901 tttcaagagg gatttgtaaa tattgagcaa aacctatagc tgcacttact ccactatctg
     6961 gcacaggcac gacaaagtct gctttataag caaatttttt agctaaagct tcgcccattt
     7021 ttttacgcac ttcatacacg cttttacctt ctactatgct atcaggtcta gcaaaataaa
     7081 tgtattcaaa agcgcaaatt ctaggagttt gagaaaaaag ttctatgctt tcaaatttat
     7141 catttccctg agtaaaaata agcatttccc ctggtttaac atcacgaata aattcagcct
     7201 ctataagatc aaaagcacaa gtttcactag caactatata gcctccatct tttaaacgcc
     7261 ctaaagacaa aggacgcacc ccatgaggat ctcttacaat ataaagttta tctttgcttg
     7321 ctaaaacaaa acaataagct cctatacatt cttttaaact ctcaataaat ctatctttta
     7381 gactttcttg cttacttctt gcgataagat gaacaacatt ttctgtgtcc atattggttt
     7441 gaaaaatagc cccatcttga ataagtcttg atcttacttc ttctttattg actaaatttc
     7501 cattatgcgc taaagcaata tcacctaaaa ccgaagtggc tgctatgggt tgggcatcgt
     7561 ttaaacttga atttcctgct gtagaatagc gattatgccc tatagcgatt tcaccttcta
     7621 aagtttttaa attatcggga ttaaaaattt gactcacttc acctttagct ttaatagtct
     7681 taatattttt accattactc acactaatac cacttgcctc ttgcccacgg tgttgcatag
     7741 caaaaagcgc ataatacgca taagtactag cattttttga attaataact cctacaactg
     7801 cacacatttt aaattcctaa aaaatcattg attgaataca tttttgcttc ttgcttacta
     7861 agccaaatag cgattttaat cgcaccttta gcaaaagtcg cccttgaagt agcggtatga
     7921 ttaagttcta aaaattctcc atcttcataa aaacctactg tatgacgtcc tactatatcg
     7981 ccacccctta aactcatcac ggcaatctca tctttgcttc tttcacctat aatgccatct
     8041 cttccactta ctcttacttt ttcaagttct aaatttctag cttttgctac actttgagct
     8101 aaagtcatag ctgtaccact tggtgcatct tttttatggc gatgatgcat ttctaaaatt
     8161 tctatatcaa aatttcttag catttgactg gctttactag caagatagtt taaaaccgca
     8221 acacctaaag acatattggt cgcataaaaa atcggcatca cttcactagc actttgcatc
     8281 aaatgtaaaa ttttctcatc aagccctgtt gtacctatta ccaaaggttt aggtatagtt
     8341 cttgcataat ttaaaagctc atgagttcca cttggggaag aaaaatcaat aatcacatcg
     8401 cttttttcaa aaagctctcc taaatttcca cccttatcat aaagtatcga aatttgtgct
     8461 tgtgtttcgc tttttaaaca ttcttcaatc tgttttccca ttcgtccttt agcgccataa
     8521 attcctattt taatcatctt tttccttgaa aataaaatat tgattttagc atttattttg
     8581 taaattttaa ataataaaat taagctttat ggttttttaa tttatataaa ttatctaaca
     8641 attttgcttc ttctcctaag cccttgctat gataaaattt taaattttta ctaagatatt
     8701 tttgctctac ccagccacca aaatcatgtg gataaagata gttttgtttt tcttgatgat
     8761 tgttgttaag ataattaggt atttctaaag cttcattatt ttttacatag tttaaagctt
     8821 cattgatagc tttgtagctt gcattagatt tgattgtgct tgctaaataa actacgcatt
     8881 gggctaggat aattcttgct tcaggataac ctatattttt aacagcctct agagtcgaaa
     8941 ccgctaaatt taaagcattt ggatcggcat ttccgatatc ttcacttgaa aaaatcacca
     9001 aacgcctagc gataaaatcc gcactttctc ctgcatcaat aagtcttgca agataataaa
     9061 tagctgcatc aacgtcactt ccgcgtaaac tttttatcat tgcacttgct aaaatataat
     9121 gtgtatcttt tgagctaaca ccttcactat ttatggtgtt gcgaagtttt ttaagatttt
     9181 caagactgat atgtttttca tttaaaacca agacaaattc aagcaaattt agcatagctc
     9241 ttgcatcagc acttttcagt agaaaatctt tagcttcttt atcaatacta aatttcattt
     9301 tttcttgtac acgcaagagt aaagtttcaa gttcctttac ccctaaagat ttaaattcaa
     9361 aaagcatgga acgacttctt ataccagaac ttagaacaaa atagggattt tcagtgcttg
     9421 cgccgattaa aattaaacgg taattttcca taggaattaa aagcatttct tgttgggttt
     9481 tgctaaggcg gtgaatttca tcaataaaaa ttaaaggctt ataaagacta tttttataat
     9541 tatctaaaat ttttcttagt tcttcgagtt taaaatttcc tccatcaaat tcataaaaat
     9601 ctaagccaaa ttctttggct acaactctag caaaagttgt ttttccagaa cctgccgttc
     9661 caaaaaaaat actatgagga agtttttgta aagcagtaaa ttttttgaaa atttctataa
     9721 gctcatattg tcctaaaata tcatcaaaat tttcagggcg aaaggtcaaa gctaggctca
     9781 ttaatttaaa tccatatttg aaaattcact accattaatt tttagttgag gattggctaa
     9841 gctatcataa gataaattta gaaaaaagtt attattttct tttaaaaaat attgatttaa
     9901 acctccataa tcttttgtcc aaggaaaaat ttcatcaggc tcatctgaac tgataacttg
     9961 taattttgct tgataagagt tgttaa
//
LOCUS       DAQSLY010000057         9977 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.057, whole genome shotgun sequence.
ACCESSION   DAQSLY010000057 DAQSLY010000000
VERSION     DAQSLY010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9977
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.057"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            136..975
                     /locus_tag="R2H98_001087"
     CDS             136..975
                     /locus_tag="R2H98_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEE9023979.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            1016..2263
                     /locus_tag="R2H98_001088"
     CDS             1016..2263
                     /locus_tag="R2H98_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9023980.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYRICFIFSIAFIIFGVLFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFVRSKIKELSIVF"
     gene            complement(2246..3514)
                     /locus_tag="R2H98_001089"
     CDS             complement(2246..3514)
                     /locus_tag="R2H98_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEE9023981.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNDWIKCEFKEENKFEICDQSKKLLSLINSFTHGVRA
                     YDENLGIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            3582..4109
                     /locus_tag="R2H98_001090"
     CDS             3582..4109
                     /locus_tag="R2H98_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEE9023982.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            4118..4291
                     /locus_tag="R2H98_001091"
     CDS             4118..4291
                     /locus_tag="R2H98_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023983.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(4292..4870)
                     /locus_tag="R2H98_001092"
     CDS             complement(4292..4870)
                     /locus_tag="R2H98_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023984.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(4943..5833)
                     /gene="cmoB"
                     /locus_tag="R2H98_001093"
     CDS             complement(4943..5833)
                     /gene="cmoB"
                     /locus_tag="R2H98_001093"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEE9023985.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLDDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(5916..7637)
                     /locus_tag="R2H98_001094"
                     /pseudo
     CDS             complement(5916..7637)
                     /locus_tag="R2H98_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(7696..7836)
                     /locus_tag="R2H98_001095"
     CDS             complement(7696..7836)
                     /locus_tag="R2H98_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023986.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(7824..9462)
                     /locus_tag="R2H98_001096"
                     /pseudo
     CDS             complement(7824..9462)
                     /locus_tag="R2H98_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
BASE COUNT         3111 a         1476 c         1546 g         3844 t
ORIGIN      
        1 attacatttt tacacatagg aaaatctttt tagtttgttt caaatgcatt atttataatt
       61 ttaagtataa ttaactttgc aattattata tatttttgca acagctttaa gcttattttt
      121 aaagaaagga aatgtatgaa aaaaatactt ctaagtgttt taacgacctt tgttgcagta
      181 gtattggctg cttgtggagg aaattctgac tctaaaactt taaattctct tgataagatc
      241 aagcaaaatg gagttgttag gattggggta tttggcgata aaccaccttt tggttatgta
      301 gatgaaaaag gaaacaatca aggctatgat atagctttag ctaaacgcat agcaaaagaa
      361 ctttttggcg atgaaaataa ggtgcaattt gttcttgttg aagctgcaaa tagggttgag
      421 tttttaaaat caaataaagt agatattatt ttggctaatt ttactcaaac tccgcaaagg
      481 gcagaacagg ttgatttttg cttgccttat atgaaggtag ctttaggcgt agctgtacca
      541 aaggatagta atataactag cgtagaagat ttaaaagata aaaccttgct tttaaacaaa
      601 ggtacaacag cagatgctta ttttacgcaa aattatccta atattaaaac tttaaaatat
      661 gatcaaaata ccgaaacctt tgccgctttg atggataaaa gaggcgatgc tttaagtcat
      721 gataatacct tgctttttgc ttgggtgaaa gatcatcctg attttaaaat gggtatcaaa
      781 gagttaggta acaaagatgt tatcgcacca gcggttaaaa aaggcgataa agaacttaaa
      841 gaatttatcg ataatttgat cattaaacta ggccaagagc agttttttca caaggcttat
      901 gatgaaactt taaaagctca ttttggagat gatgttaagg ctgatgatgt agtgattgaa
      961 ggtggaaaaa tttaataaag ggctttttgc cctttatatt gatttaggat aaaatatgca
     1021 aaaaaaatac aaaaatatta tttatgcttc tttgggtgga attttagaat tttatgattt
     1081 tgtgcttttt gccttttttt tggatatttt tgctaaggta ttctttccgc aaaatgatgc
     1141 tttttggatg cagataaatg cttatatagc ctttggtgct gcttatttag cgcgtccttt
     1201 tggttctatt gtgatggcac attttgctga tagatatgga agaaagaata ttttttatat
     1261 ttctatgctt ttgatggttt tgcctagttt tgctttagct tttttgccaa gttatgaaag
     1321 tataggtata tttgctactt tgattttatt tactatacgc attttgcaag gtttagccgt
     1381 tggaactgag gtgagcggag cttggattta tgtgagcgaa tttgtcaaag ggcgtcaaat
     1441 tcctttagct cttggtttta tttcagcgac tttaaccata ggtttattgc taggaaatat
     1501 tgccacttta ggcataagat cttattttac cccagaagaa gttcaaagct atgcttggag
     1561 aattcctttt atcataggag gattttttgg aattttagct ttgtttttaa gaaataaact
     1621 cagcgaaact ccagaattta taaaagttca aaatgaaaag aaaattttaa gttttccatt
     1681 gttcgaagct ttaaaaactc ataaaatgag tatgcttgtt tgttttttaa tgaccatggt
     1741 tttaacaagc ggtgtggcaa ctttgatgat tttacctaag tattttgaaa gtcttttagc
     1801 tatgagtaaa acttctgctt tatgggtgca aaattttgct attttagcgg tgatttttgg
     1861 agctttattt caaggttttt tagcaagcaa atggggaagc tataggattt gttttatttt
     1921 tagtatagct tttattattt ttggtgtgct ttttagtttt tatgatgaga attttttatt
     1981 ttatttttta ctggcttgtt ttgcacaagg tattattact ttcgcgcctg tttttatgac
     2041 gcaaattttt aaaagtgaac tgaaatttag cgggcttagt tttgcttata atatttctta
     2101 tgcgatttta ggttttttaa ccccttttat agttaatgct ttttataaag agtatttggg
     2161 tatttatctt gctatagtgg gatcttgttc cttgctttgc gtgtttttgt taaaacgcgt
     2221 ttttgtaaga agcaagatta aagaattaag cattgtcttt taaaacttca aaaacaacct
     2281 tagatatttt ttcaactgaa gcgatttcac aatgctcatc agttgaatga ggattatgga
     2341 tatttgggcc tatagaagcg cataaaagct cttgtttttt ctctataatg ccacactcaa
     2401 gccctgcatg gatagctgaa actttggcat taggcgatac ttttttaagc gctttaaaaa
     2461 ccatgtcgct aagtgcgttt ggtttgcctt cccaaggtgg atagaaatta aaacttctta
     2521 ctttaaaatc aaaagccttg aaaaattcta aagtttcaaa ttctacttgc ttaagtccat
     2581 caagtatatt agatcttgca aaaagtgcga atttgatttg gttatcttgc attcttaaag
     2641 tagctaggtt aatgcttgtt tgaactatac ctagattttc atcataagct ctaactccat
     2701 gagtaaaaga atttataagg cttaaaagtt ttttactttg atcgcaaatt tcaaatttat
     2761 tttcttcttt aaattcgcat tttatccagt cgttgctctt tacttcatct ttaaaatgca
     2821 ctaaagcttt ggcgtgttta ggtatagaat tgattctttc tccgccttca aaagaaatga
     2881 tttctccttc attctcttgt atgaatttag ccatttcttt gatggaactt ttttcattgc
     2941 gtatgatatt tatgcctgag tgtccacctt taaaattttg cgcacaaagc tcataaattt
     3001 tacccttttt tctaagggta ttaaaagaca aacttgcttc tatatctact ccacctgcac
     3061 agcctatcat gatctcatca tcgctttcat gatctaaatt taaaagcatt ttagattcta
     3121 aagtgtgctc gagtgaattc actcccatga gtcctacttc ttcatcgttt gtaaaaagac
     3181 attctaaatt ttcaaattca gccatagcac tcatcatgat ggctatacct atgccattat
     3241 ctgcaccaag acttgaattt ttggctctta aaaagccatt ttcttcataa acttctaagt
     3301 ttggtgcatc gcccatacag accatatcat aatggctttg tagacaaatt tttggtttgc
     3361 cttttatggc atggatattt cctgccttat ctacactcac cttaaagcct ttatctttgg
     3421 cgtaagagct taaaaattct ttcatttgtt ctgtttcata actgcaatga ggaattttgc
     3481 ataattgttt aaaattttct ataacatttt gcattttatc tcctttgttt tgataaaatt
     3541 atggcatatt ttttaaaatt taaaggcaaa atgattaaaa aatgagaata aattataaaa
     3601 aattatttaa tctaagaaaa ttattaagtg atccaaaaaa acttttttct gtattaatct
     3661 tcactcttgt agttgttttt atccagaact atattgccca aaattctagt tttgaaggaa
     3721 aagtagttag aattattgat ggagatacta tagaagttaa tcatgaaaac aaactcgcta
     3781 gaataagatt ttttggtata gatgcaccag aacttaaaca aagttttgga aagcagtcaa
     3841 aagaagcttt aagtagaatt ttaagtggca aacaagttga aattatttat aaaaataaag
     3901 atacttatgg tagaattgtt gctattgtaa agcttaatga tgttgatatt aatcgatttt
     3961 tggtaagcaa aggctatgct tgggctgata cttactatag taacgcttat accaaagaac
     4021 aagaaaatgc taagaaaaat catttaggtc tttggaaaga gagtaatcct atagagcctt
     4081 ataaatggag aaaacacaat aaattctaag gaaaaacatg aaaaaatata ctttaatggt
     4141 gctattagct ttaggaattt ctggatgttt tgtaaatgaa agagggattt caaatcgttt
     4201 ttatgatgat tgtaaagagt attatgatgg aagtggaact tatcataagg attgcccaaa
     4261 aaattgggta gatattaaaa tgactccttg attattttcc acccacagag gccattaatg
     4321 cagctgctac agcttctgga ttgttgattt tggcaccttg ttcttgattt tctgtaggtt
     4381 taacagtgtt aagtggcgga cgcttgagtt taaatatatg ctcatcggtg ctaacaactt
     4441 gtatcgttcc ttcaaacatt ttaacttctt taacatgtcc aaccactttt acatctcttt
     4501 ttttggaggt ttcgtcaaaa agtgcatgag cttcaagttc taaaacatcg cctaatttaa
     4561 gcggagcata aaaaaaacat tttgatccaa taatcactga aaattcttta ttgatagagg
     4621 cttgtgctac atagtttgcc gcagcgaaaa taaaggcatc aaaaatcaat ccttgatcat
     4681 ctgctaccat ttcgcttgtg gttattaaaa ttgatttggc atagttttta tcaatttcta
     4741 taatggttcc agcaagagag gtgtttaatt caggacaagt gagtaattct gctctaacgc
     4801 gagatatatc ttctgcagat gcgtattctt caagttgtgc atattcttca aaattatctt
     4861 tttttgccat atctaacctt taaattctac ttatctactt caaaatatct aattttcaat
     4921 atcggtaaaa aataaaaaga atttatattt taatgcgtat ataaactctt ttgggtgctt
     4981 catagccttc aatggtaaga tttttatcct ttggatctaa gaaattttcc agcgaaaaag
     5041 agtctatcca ttctgttttt ctttgttcgt tttcatcggt tttttttgta gccaaaactt
     5101 caaattcttt aaatcctgct ctttcacacc agttttttaa tgcactaatg cttggtacaa
     5161 aataaatatt tggaatttta gaataagttt tattaggcac aagagcgatt tctctctcat
     5221 cttctatata catggtatct aaaaaaacaa ctccattttt attaagtcct gcttttaaat
     5281 cttttagcat ttttatagga tcacttctat gataaatcac cccaagacag aaaatcacat
     5341 caaatttcaa gccatagctt ggaagatctt ctacgcctaa aagttcgtat tttataggag
     5401 ttttagctaa agcgttaatg agttcaaatt gcaaacggta tttgatagaa ggatcaaaac
     5461 ctatgagttt tgcaggatta aattcaagca ttttaaacat ataataacca ttattacagc
     5521 ctatatcagc aacgcatttt tgagaaattt cgttcatgaa aggctttaga atgttgaatt
     5581 taataaaact ttgccattct gtatcgatga aaagatcgtc tattttaaaa ggaccttttc
     5641 tccatggttt aagttctttt gctatagcta agatttcatc tttggcttga gaatttgtag
     5701 ataaatttac actatcatct aaagaaaaat tacaagcaag attgagagct ttaagttctt
     5761 gaattttagc gtataaaggg tgatttagaa attgtttttc aagtaaattt tcttgcattt
     5821 ttatccttga catttgcttt taatgctaaa ttataacatt aaaagctttt atggcaatat
     5881 aaattatatg cattaaatat ttgatcaaaa ataactcaaa aatactttct aaagattaca
     5941 taagctttag aactataatc atcatctagc ttatacttct ttaaagctct agctaaatca
     6001 agcttgacat aaaaattccc tgttttatta taaagcagtt gtaaaccata agcatctata
     6061 tagtttgtat aagaatcatt ctcataccaa gaataactta tatcataaaa aggagtaata
     6121 taaaaaatct tttaaaggag tagccattct aagtccaaag ctggccacta cagcattatc
     6181 tcattattat aagcccttac tccataagga cctcctaaag atatggtttc actactatct
     6241 aatgtagatc cattgataac ttgttgataa tttaaactaa aaagatgagt aaaggtatca
     6301 ttaaggaaat aagcattgtt aagattgaca ttgagtttag caaattttcc aaagccatct
     6361 ccatctgttt tagaactcat tcctaatata gtagttcccc atctttaaca ttatcatagc
     6421 ttacattagc actataagaa aaactatcat tactaatgcc attataaact ccttctatac
     6481 caaagcttat cgtatcagag cttttatcta tagtcatgat atttaatctt gaattactaa
     6541 gctttttatg ataataactt gaagttaaat aaaaagaatt ataagtcgta atccacaaag
     6601 gatattttaa atctatacct agattttcag aagttcctat aaagtttgca tttttataag
     6661 ctcctcctaa agcatagttt cttttagaat aacttcgagt gatttttaaa ttccctaaga
     6721 aagtagtata gcttatacca tagttagttt gtgcttcatc gcttctttgc aaataagcat
     6781 taagactatc tctttgatga gctatgttat taaaactcat actagcacca cccctattat
     6841 ctgcctgatt cttttatacc gtaattatct ccataaaaca atacagaaac aaagctatca
     6901 ctaggggtag tttctatcac tatatctgtg tcacctagat tatctcctgc ttttaaagaa
     6961 gcaagggttt gtatgccata catttcattg actttataaa ccgcatcttc tactaattta
     7021 gtagtgatga tttcaccttt atgattaggt aatttgcttt ctatagtata atctcttaca
     7081 ctaggattgt tttgaaccac atatttacct aaaacaccta aggtgatatt gatttgaatt
     7141 tgatctttta gttcttgttg tgggatataa gctgtagcag caggataacc actaacttga
     7201 acataataag aaataatatt ggctatatct tgtaagtctt gaactgaaat actttctttt
     7261 ttgtaatcgt ttaaggcttc ttgtaaaact tgctcatcta aacctagatc tttaaagttt
     7321 atgtttttat tggtaatatg aaagttaaag ctaactttat gaattgattc ttctttagaa
     7381 gtatttttta aagaaggagt gtttgaattt ggggttttag tttttaaagt attatcatta
     7441 gacaagttag gttgattttt ttgaatgttg ttattatctt tttgagtgtt tttctttgtg
     7501 ttggtggttt ttgaattatt attattatta tcactagtat tagaatgatc tatgataatc
     7561 actccatctt ttacttttaa agtgttattg tagtttttta agttagcatc ttctttataa
     7621 ggagattgtt ctaacatttg tatggttttt ttattatctt tagtatcact agcataaagg
     7681 cttaagatag ctaaactaga tagtaagata atgcgtttta tttaaatttt ccttagtgtt
     7741 tgtttgattt ttaatcttta aactttgttt gttttttaat tttttaacaa gatccaaaag
     7801 gcttttaacc ttttggattt taatcatctt gagcaaggat ttcctgcttt aaaattatcc
     7861 gatactatac aacattacca ctttcttgag tactggcttc atctatactt gcttgtttat
     7921 catcttcatt gatatttgga tcttcatctg tagtttgtat aaaaagctgt agcaatgcca
     7981 ggttcttgtt gtcctatggt atcatttggg ttattattag aaccgttgtt gttgctattg
     8041 ttaatatcac ctgaatcggt tccatcgttt ccgttgttgg agttgttaga tcctaaattt
     8101 ataatggata ctggcttata gtttgcacta tattttcatt gactgtaaga tgactagttc
     8161 catttatgct cgcacttgct aaagttttat tagaattttc taaactagaa ttagtattcg
     8221 ctgtagcgat ttgaagagct attgtagctt gttgtaaatc actagaaact ttatctacag
     8281 cttgttttaa acctgcaata actttatcgc cattattacc tgttatacca cttagagctg
     8341 tattgtaagc tttaactgct tcattataag catttgcagc agtatcgtaa gttttttgag
     8401 cgttttcttg cccttcggtc attttaggaa ttttgagaaa gaatttcctt tgttttaata
     8461 atggcttgat tagcttttcc tagatcacca taagaatttc ccaatacttc ctttaaagcg
     8521 tttgcaaatg ttgcattatt gctatcttga gtttgtccat ataaagcagt aataaaatcc
     8581 atactttgat tatgcttgtt agttcatcag ctgttaatat ttttccatct ttataaaatt
     8641 tacttaagtc gctaatatca acactagaat taaatttcaa gtcattaaat atagaattta
     8701 aaacttcatt tgagatgtta tctttagcaa taagatcgct agtttcttta tagcctattg
     8761 tgtctgttgg atctcctcct ggtccagtta agcctttatt agatcttata ctcaatatta
     8821 cagagtcttc ttttttattg tatttgatgc aggaccacga atgacaaatg tatcattact
     8881 atagacatta agatagacgg tattggattg ttctttttta tttgtaaaaa tgaatttacc
     8941 ataatcagtg ccaccatatt tcatatttga aacttgattg cctgccatag caactctttc
     9001 tcctaccgtt atagtttcta aatttataac atttcctgca ttggatttaa ttacaggtga
     9061 tattgtttta ggatttcctt taaatgctga aagttttcca tcttttgcaa actccttcat
     9121 ctccttatca cctattgatg aagcagacag aacaattttt ttccaccttt acccactact
     9181 atgccattag gattgattaa aaagatatta ttgcttccgc tattgagtgt tccatctata
     9241 atgagagctt ttagaaccat agacaatatt taaataattt tggttagttt ttccttgtcc
     9301 aaaatttaca gtttcatcac ttgctatatt aaaaccacca ctaacactta tacttccact
     9361 tgttccatga gtgaacttac ccccacttgg taaagcatag ctttgtgtaa aaagtaaaga
     9421 acctacaact aaagacaaag aaagtttatt taactttttc atgacttgct cctttttgta
     9481 agattaagat ttaagaatct tttgtttata tttataaaaa tacaaataaa ttattcctat
     9541 cttaaagata ggaataattt attttatcct tgcgtaaatg cttttgccat cttgagatat
     9601 tcttacttca taagaaagtt tttgtaaatt catctttttt aatttatcta tagaacttag
     9661 tttaaaatct tctttgtttt tttgcatttt ttcaataaag ctttgaagtt cttcttgatt
     9721 taaagtatta gagttttcat ctataaaacc ttgctcactt tgtaagatta agatttcttt
     9781 atttttaata taggggtatt actctttgag ggtgtaaaga gctaatactc cttagctaga
     9841 aatattaata ggagcatcgt atgacttcaa aaaggggagt tgtgttgatt ttattggatg
     9901 caataagata ataatgctca aagttattaa taattctagc ttcaacttta gtatttaaaa
     9961 tcagtctatt gttttta
//
LOCUS       DAQSLY010000058         9964 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.058, whole genome shotgun sequence.
ACCESSION   DAQSLY010000058 DAQSLY010000000
VERSION     DAQSLY010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.058"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..419)
                     /locus_tag="R2H98_001097"
     CDS             complement(<1..419)
                     /locus_tag="R2H98_001097"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023987.1"
                     /translation="MLPSFKADFEVAIKWEKERECQEAINDKIEPYYNIEIEKAKDEN
                     YLYDYLCNSWLENPLYFIFQSEECTILNNKIEEQKIALCDFLLNNDILFNSFKIFNKL
                     SPRERVKERENIIHNLSHFVKFSMEKFLYNTIFKSEI"
     gene            complement(457..594)
                     /locus_tag="R2H98_001098"
     CDS             complement(457..594)
                     /locus_tag="R2H98_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023988.1"
                     /translation="MNLILENVSDDLAKVIKAMAKIENTKVKLKKEKKLTINGFNLSL
                     F"
     gene            complement(605..973)
                     /locus_tag="R2H98_001099"
     CDS             complement(605..973)
                     /locus_tag="R2H98_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEE9023989.1"
                     /translation="MKKDINYYLNLPYKINLVKLDDGDYFAQFDDKELNKLVLMAGDG
                     KTPNEAIEDLKNAFACYLEEALAKNEFIPEPIQKDKSKNLAITLKNSLVDEIDFYSKK
                     MGLSRSAFLAVSAKAYIKTL"
     gene            complement(970..1197)
                     /locus_tag="R2H98_001100"
     CDS             complement(970..1197)
                     /locus_tag="R2H98_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEE9023990.1"
                     /translation="MNNKEKLIKELENNPKNASFANIEKLLSWYGYKLVSIRGSHHKF
                     KKDNKSIIVPLHKPIKEFYVKQILKLLKDEK"
     gene            complement(1316..1956)
                     /locus_tag="R2H98_001101"
                     /pseudo
     CDS             complement(1316..1956)
                     /locus_tag="R2H98_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003012382.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1959..3098)
                     /locus_tag="R2H98_001102"
     CDS             complement(1959..3098)
                     /locus_tag="R2H98_001102"
                     /inference="COORDINATES: protein motif:HMM:NF012798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEE9023991.1"
                     /translation="MAIDRKDYNIPIGKGTHLKRHKDKINSFLFRMQNGGKEKQHAFT
                     IPLRPAWNENEYIRIALARAKEYENEFKKLFSVGYALNSSILIKNIFEIFIKTNYNIK
                     DLNEQHKGHIRNLISIFNNHILEPLGNIHLDELTLYKVQEFYNGMKNKGLEPKTYNRA
                     IKEVLSPMIRYAVKNKWINENVTLGLKLDRVQNKKLVTNPKGKYEAILNAILELYKDN
                     LLYKALFLLIHSGRRRDEVLSLLWQNVDLERKTIFLPKTKNGEAQEHALDDECYNALK
                     ALKDEVKQDKGLVFVSSVSGKKISNLARQEAKIRELSGVKEWTPHFSRHIKASFLMQN
                     GVNPAVISGALGHRDLSTINIYATNDTLKASQRANEALKKLQEKD"
     gene            complement(3396..3480)
                     /locus_tag="R2H98_001103"
     tRNA            complement(3396..3480)
                     /locus_tag="R2H98_001103"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3444..3446),aa:Leu,seq:tag)
     gene            complement(3485..3561)
                     /locus_tag="R2H98_001104"
     tRNA            complement(3485..3561)
                     /locus_tag="R2H98_001104"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3525..3527),aa:Arg,seq:tct)
     gene            complement(3576..3652)
                     /locus_tag="R2H98_001105"
     tRNA            complement(3576..3652)
                     /locus_tag="R2H98_001105"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3616..3618),aa:Arg,seq:tcg)
     gene            complement(3656..3732)
                     /locus_tag="R2H98_001106"
     tRNA            complement(3656..3732)
                     /locus_tag="R2H98_001106"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3696..3698),aa:His,seq:gtg)
     gene            complement(3757..3834)
                     /locus_tag="R2H98_001107"
     tRNA            complement(3757..3834)
                     /locus_tag="R2H98_001107"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3797..3799),aa:Pro,seq:tgg)
     gene            complement(3877..4725)
                     /locus_tag="R2H98_001108"
     CDS             complement(3877..4725)
                     /locus_tag="R2H98_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEE9023992.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(4725..5387)
                     /gene="cgpA"
                     /locus_tag="R2H98_001109"
     CDS             complement(4725..5387)
                     /gene="cgpA"
                     /locus_tag="R2H98_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEE9023993.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(5377..5580)
                     /locus_tag="R2H98_001110"
     CDS             complement(5377..5580)
                     /locus_tag="R2H98_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9023994.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(5646..6890)
                     /gene="eno"
                     /locus_tag="R2H98_001111"
     CDS             complement(5646..6890)
                     /gene="eno"
                     /locus_tag="R2H98_001111"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEE9023995.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            complement(6890..7921)
                     /gene="recA"
                     /locus_tag="R2H98_001112"
     CDS             complement(6890..7921)
                     /gene="recA"
                     /locus_tag="R2H98_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEE9023996.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            8028..8888
                     /locus_tag="R2H98_001113"
     CDS             8028..8888
                     /locus_tag="R2H98_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEE9023997.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILDFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDVIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            8900..9169
                     /gene="fliQ"
                     /locus_tag="R2H98_001114"
     CDS             8900..9169
                     /gene="fliQ"
                     /locus_tag="R2H98_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEE9023998.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            9166..9942
                     /locus_tag="R2H98_001115"
     CDS             9166..9942
                     /locus_tag="R2H98_001115"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEE9023999.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQIYDFDGFLIGGANNLLVSPK
                     PKNIGILGDSFDFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
BASE COUNT         3119 a         1736 c         1399 g         3710 t
ORIGIN      
        1 tttatttcgc ttttaaatat agtattatat aaaaactttt ccattgaaaa ttttacaaaa
       61 tgtgataaat tatgtattat attttctctt tcttttactc tttctcttgg ggataatttg
      121 ttaaaaatct taaagctatt aaaaagaata tcattattaa gtaaaaaatc acataaggct
      181 attttttgtt cttctatctt attatttaaa attgtgcatt cttcactttg aaagataaaa
      241 tataaaggat tttcaagcca actattacat aaataatcat ataaatagtt ttcatctttt
      301 gctttttcta tttctatatt ataatatggc tctattttat cattaatggc ttcttgacat
      361 tctctttctt tttcccattt tatcgccact tcaaaatcag ctttaaaact tggtaacatc
      421 gcttatttta ctctcttttt cccatttaac cacttattaa aataaactta aattaaagcc
      481 attaatagta agtttctttt ctttttttaa ctttactttt gtattttcta tttttgccat
      541 tgctttaatg acttttgcca aatcatcgct tacattttct aaaatcaagt tcatttttaa
      601 ccccttaaag tgttttaata tatgctttag ccgataccgc tagaaatgca cttcttgata
      661 agcccatttt tttagaataa aaatctatct catctacaag actatttttt aaggtaatag
      721 ctagattttt acttttgtct ttttgtatgg gctctgggat aaactcattt ttagccaaag
      781 cttcttctaa ataacaagca aaggcatttt ttaaatcttc tattgcttcg tttggtgttt
      841 taccatctcc tgccattaag acaagtttat taagttcttt atcatcaaat tgtgcgaaat
      901 aatcgccatc atcaagtttt actaaattaa tcttataagg caaattcaaa taataattta
      961 tatctttttt catttttcat cctttaaaag ttttaatatt tgctttacat aaaattcttt
     1021 tataggttta tgcaaaggca caataatgct tttattatct tttttaaatt tatgatgact
     1081 tcccctaatg ctaactagtt tataaccata ccaacttaaa agcttttcta tgttagcaaa
     1141 acttgcattt ttggggttat tttctaattc tttgattaac ttttctttgt tgttcatata
     1201 tgtattatat atataattat cttaaaatat tttaaatgca ttcaaagcct tgcaaagtat
     1261 tttatatttt attaagtatt tgtattttat aattctttta cattcaaagg gaggctcaac
     1321 ccctattaag ataatctaac aaatctttat ttattaaaca aatcaaatca tttaaaaagt
     1381 tttctatctt atcaggcatt aaacctatat tagtcccttt ttcttttgtg cttatgcgtg
     1441 gatataattt attatcattt tctctaattt ttaaaagatt ttcaaaatga caggctctat
     1501 tccttaaagt atgtagcaag tttaaaacta tattaacttt atctatatta tcaaagcctt
     1561 gttttgtatt ttcgtaaata aaaaagtttc tattactact gctatacttc ctaaaatcaa
     1621 aagcccttaa atctaaaatc ttattttgca ccttgtaaga tatgattaat ttagccacta
     1681 cacctaagct aaggcgtgat aagatttgat gaggctttaa actatcttta tctttaaact
     1741 catttatttt agccaataaa aaggattatc gctaattttt atccattctt tgcaattact
     1801 atttaattca taatctaggg catttcttag ataaatttca agtattgcta ttttaggcat
     1861 tatcttagat attaatttca agttctcaaa atgttcgttt atatctttat aatgctctaa
     1921 tctttgcttt gaaaagataa attctaaacc taacattttt aatctttttc ttgtagcttt
     1981 tttaaagctt cattagctct ttgacttgct ttaagtgtat cattagtcgc ataaatattt
     2041 atagtactta aatccctatg ccctaaagct ccactaataa ctgcgggatt aactccattt
     2101 tgcattaaaa aactagcctt tatgtgcctt gaaaaatggg gcgtccattc ttttactccg
     2161 ctaagttctc ttattttggc ttcttgtctt gccaaatttg atattttttt accgctaaca
     2221 ctagaaacaa aaactaatcc tttgtcttgt ttaacctcat cttttaaagc ctttagtgca
     2281 ttatagcatt catcatctaa ggcgtgttct tgtgcttcac cattttttgt ctttggcaaa
     2341 aatatagttt ttctttctaa atctacattt tgccaaagca aacttaaaac ctcatcccta
     2401 cgcctaccac tatgtataag caagaataaa gctttataaa gtaaattatc tttgtatagc
     2461 tctaaaatag catttaaaat agcttcatat ttacctttag gattagtaac aagcttttta
     2521 ttttgcactc tatcaagctt taaacctaat gtaacatttt cattaatcca tttatttttt
     2581 actgcatatc taatcatagg gcttagcact tctttaatgg ctcgattata tgtttttggc
     2641 tctagtcctt tgtttttcat tccattataa aattcttgta ccttgtaaag cgtaagctca
     2701 tctaagtgta tatttcctaa tggctctaag atatgattat taaaaatgct tattagattt
     2761 cttatgtgtc ctttgtgttg ttcgtttaaa tcttttatgt tgtaattggt ttttataaat
     2821 atctcaaaaa tattttttat caaaatgcta gaatttaaag catatccaac gctaaaaagc
     2881 tttttaaact cgttttcata ttctttagct cttgcaagtg ctattcttat atattcgttt
     2941 tcattccacg cagggcgtaa aggaatagta aaagcgtgtt gcttttcttt acccccattt
     3001 tgcattctaa ataaaaagga gttaatttta tctttgtgtc tttttaaatg tgttcctttt
     3061 cctatgggta tattataatc cttcctatca atcgccattt ttaaccttat tatttttgct
     3121 atattatagc gtatttcaaa gccttataaa cttaataaaa ttatcttagg ttacctttac
     3181 tttagggtta ggacttattt ttaccttttt taccgctaaa cttaaatgga tgaaaaggac
     3241 tattttatag ctatcctttc atccggttac tattaaaagt tacctgctaa aaggttgcct
     3301 ttttgaaata attcgaaatg atacaatggg acttcaaagg cttcagcgta atttaagcaa
     3361 aatctctaaa agtatggtaa aatgggggtt tagagtggtg cggacgaaag gacttgaacc
     3421 ttcacgcatt gctgcaccag atcctaagtc tggcgtgtct gccaatttca ccacatccgc
     3481 aaagtggtac gcccaagagg attcgaacct ctgacctacg gcttagaagg ccgttgctct
     3541 atccagctga gctatgaacg catataaaat cttggtggtg cgcccgatag gaatcgaacc
     3601 cataacctac agatccgaag tctgttgctc tatccagttg agctacgagc gctagtgggg
     3661 tgagtgatgg gaattgaacc cacgaccctc aggaccacaa tctgatgctc taaccgactg
     3721 agctacactc accattttgt ataaatttat aaaaaatggt cggggtgaaa ggattcgaac
     3781 cttcggcccc ttggtcccaa accaagtgcg ctaaccagac tgcgctacac cccgaataaa
     3841 taaaaggaaa tattttatca caaaataatt ttaaagtcaa ggattttcat ctcttattct
     3901 taaaaaaacc ggaaagcgag gtaaggaatt tttggtcaat ccattaaatt tataagtcac
     3961 aatgctacca atttttggag gattttttct atcttcatct tttaaaccac tgcctatttt
     4021 aatgatttgt ccattaggca ttttacaaag taaggcacct acttgatttt caaatttacc
     4081 cttgcccttg cgaaatccta ctaactcaca ctctgcatca tcatagggtt ttaatttcat
     4141 agcattttta cttctgcctt tttcataagg acttaaattt ttgcgtatga caataccttc
     4201 accttgattt tttataatgc tttcgtaaaa ttgatttaaa ttattttgat tttcaactgg
     4261 aatttgagga ataattttta tataggcact aggatatttt tgcaaatact cttctaaaac
     4321 agccaaacga tttttaagag tacaagtaga aatttgaaat tcttcgcaag catttggcac
     4381 atcaaaaata ttataagtta cttccttcca taaggtcaaa ttactatcgc cactacgaat
     4441 taaagctgaa atttcatcaa atttatttct tgctatccaa agctcaccat caatagcaaa
     4501 aggagggaaa ttttttgtaa aaaagtcagg agtttttatt ttgtaatttt ggcgagtttt
     4561 tagatatttc ccatcccaaa ttccacgcac tccatcaagt ttttcgctca tcaaataagc
     4621 attaaaatct ttagagttaa aatcttgctt atcgaatttg ctaagaagta aaatttcatt
     4681 agcaaaaact aaacaagcac aacatattaa aaaaacaaac ctcatcaaag cagattaatc
     4741 atatatccag ttgcatcttt ttgaatatta taattataag ttccatcaag atatattaca
     4801 agtcgataat atcctttatg agatccaaag tctatgcgtt taaaaataga attgctaagg
     4861 cgtatgtttt ttgtagggct aatcatttta gatctaaaat ctataacgat tttacttgga
     4921 tttcctactg aaaaatctgt aatcatttca tcactagtgt taagttttat tttattttta
     4981 taaaccgcat aagaaataaa atcataaatc tttgcaacct gtaaaggtat ttcaacattg
     5041 gctgttgagt ttgattcttg tttggagcta tttttttcag gtatagtaac tgaaacatcg
     5101 agtacttttg aaggatcagg acttttaaat cttgatatag tataagtatc gtgccaatca
     5161 atacttttat tgacatctaa atcgatctta tcttcacttc cgtctaaatt gatataatta
     5221 aaagtgatgc tttttaaaat tcttgcacta gaattaaatt taacttcctc tttttgaaat
     5281 tcaggtggag caaccaaggt tatattttga tctgtcttaa aaggattttc atcagcatat
     5341 aaaagagagg taaaaataaa aaatattgcc aaaattctag ttttcatttg ggtataatcc
     5401 ttttaattca aaataatctt tttgtgcttt agcattttgt tctttgagca aaataatctt
     5461 tttattaagc tcttctttgg tattttctaa gcttaataaa gtatctaaag aatactgccc
     5521 aaaaaacata ttgccaaaat aaatcgctcc aattacaaca agaaaagccc aaaaaatcat
     5581 ttttataaca tgggtataaa aacttttttt tcttgtgctt tcgtcgtatt ctttaagtaa
     5641 atcgctcaga gcttttctcc taagtattca tcgctttcaa gttcaatttc aagcaagcga
     5701 ttgtattttg cggttctttc acctcttgct agggctcctg ttttgatttg tcctgtattt
     5761 aaagccacag caaaatccgc tataaaagca tcttcacttt cgccgcttct atgactcatc
     5821 acacatttat agttatttct ttgcgctaaa cgcacagttc tcatagtttg ggtaatagtt
     5881 ccgatttgat ttggtttaat aagcacagca tttgccattt ttttgatgat gccttctctt
     5941 aaaatatctt cattagttac aaacaaatca tcgcctacaa gctgaatttt attgcccaat
     6001 ttttcagtaa gcttaatcca accttcaaag tcattttcag ctaagccatc ttcgatactg
     6061 caaattggat attttgcaca aagttctaca tagcgttcga tcaaatcctc gcttgaaaaa
     6121 gccttgcctt ccatgtgata tttgccatct ttgaaaaatt ctgtacttgc cacatcaaga
     6181 gcgattttta cacgattttc ataacctgct tttttgatac aagtcattaa aagatcgata
     6241 ggttctgtgt tgttagctaa atttggagca aaaccgcctt catcacctaa agccgtagaa
     6301 tgtccagaat ttgcgagttc tttttttaat atcgcataaa tttcacaaac tgaacgcaaa
     6361 gcttctttaa agctagtaaa accaaaaggc atgatcataa attcttgaaa atctacattg
     6421 ttgtttgcat gagcaccgcc atttatgata ttacacattg gcacgggtaa aatgctcgca
     6481 tttgcaccac ctaagtagcg atataaaggc attcccaaag cagctgcagc cgcacgagct
     6541 gttgccatag atacgcctaa agtcgcattt gcacctaaat ttgagtaatt atttgttcca
     6601 tcaagctcac gcaaagtatc atcaagttga gtttgattaa aagcatctag tcctaaaatt
     6661 tcatctgcaa tggtctcatt gacatttgca acagctttta aaacgccttt tccgccaaat
     6721 ctttcatcat tatcacgcaa ttctaaggct tcttttgaac ctgtacttgc accacttgga
     6781 actatggccg cacctacact tccatcgctt agcgtaactt cggcttttac ggttggattt
     6841 cctctactat caagaacttc ataggctcta acatcttcaa ttactaacat tattcttctc
     6901 cttcgtcatc ttcgctaccg ctgatcatac cttctattcc catagaattt tgaattgctt
     6961 ttgtgatttc atctgcaatt tcagggtttt cttttaagaa agcttttgaa ttttctctac
     7021 cttgtccaag ttttttatct ttataagaaa accacgcacc acttttatct acgatatcaa
     7081 gttttacacc ataatcgatc aattcacctt cacggcttaa accctctcca aacatcacat
     7141 caaattcagc ttgtctgaat ggaggagcaa ctttattttt aactactttt actttaacgc
     7201 ggtttcctat aggttcttcg ttttgtttta aggttgctac ttttctaaca tctaaacgca
     7261 cagaagcata gaattttaat gcatttccac ctgttgtagt ttcaggagta ccataaccca
     7321 tagcaccaat tttcatacga atttggttga tgaaaattac tgtggtattc attttatgaa
     7381 ctatacctgt aagttttctt agagcttgag acataagtct tgcttgaagt cctacatgtt
     7441 gatcgcccat atcgccttca atttctgctt ttggagtaag tgctgcaacg ctatctacta
     7501 cgataagatc tactgcgcca cttcttgcta tagtttctac aatttctaag gcttgttctc
     7561 caaaatcagg ctgagaaaca tacaaatcat ctgtatttac acccaaattt ttagcatatt
     7621 ttacatcaag cgcatgttct gcatcgataa aagcacaaac tccacctgct ttttggcatt
     7681 ctgcgataat atgtaaagtt agagtggttt tacctgaact ttcaggtcca taaatttcta
     7741 taattcttcc ttttggaaca ccgcctatac ctaaagcaag atcaagccca actgaacctg
     7801 tgcctatgct atcgatttgc tcgacttctt tatcccctag tcttaaaata gtgccttttc
     7861 caaaggtttt atctaaactt tttagggcag cgtctagaga ttttctttta ttatcatcca
     7921 taactttcct taaaaattct aaatttttag ttagaattct aacaaaataa aattaaataa
     7981 tgatttattt tgctagaatt aaagcaaaga tttacaagga agcatagatg aaaaaaatta
     8041 ctattgcaca ttctcctgat gctgatgata tttttatgta tatggcaatt aaatttgggt
     8101 ggatagggaa tgattttgct tatgaaaata cagctttaga tatacaaact ttaaatgaat
     8161 ttgccttgaa aaatgaattt gatgctacgg ctatttcttt tgggctttat cctttaatcg
     8221 cttctgagta tgcactttta cgcacagcag tgagttttgg tgaaggttat gggccaaaac
     8281 tcatcaagaa aaaagacacg catttaaaaa gaaattttaa agtcgctttg agtggagcaa
     8341 ataccaccaa tgctttgatt tttcgcatga aatatcctga agcaagaatt atttataaga
     8401 attttttaga cattgaaaat gcggttttaa gtggcgaagt agatgcggga gttttgatcc
     8461 atgaaagcat tttagatttt gatcaaagtc tttacgtgga agcagaactt tgggatatat
     8521 ggcttgaatt tgctaaagaa aatttgcctt tgcctttagg tggaatggct ttgcgtcgtt
     8581 ctttaccttt aagcgacgtg attaagatcg aaagagattt aaccaatgct gtaaaaattg
     8641 ccgatgcaaa tcgtaaaatt ttagccccta tgcttatgga aagaaaactt atccgtgttg
     8701 atgaagaaaa acttgatact tatcttaatt tatatgccaa taaaaactct attagcatga
     8761 atcaaactca acttttagct gtagatacgc tttttaaatt aggatatgat tataaatttt
     8821 atgataaaat catacatgta aatgattatc ttatccctag cgaatacgaa gaagctagaa
     8881 attcttaaaa aggataaaaa tggacgaaag taccttagtt gctcttggag tgcaaacctt
     8941 taaaatcaca cttttacttt ccttgcctat gcttttagca ggacttattg cagggcttgt
     9001 gatcagtatt tttcaagcaa ctacacagat taatgaaatg acactttctt ttgttcctaa
     9061 aatcatcttg gttgtggtta ttttaatctt tttaatgcct tggatgacta caactatgat
     9121 tgattttact gagaatatac taaatcaaat tccaactttt atcaaatgat cattgatttt
     9181 aaaaaatact cttctgtgcg tataggaaat gaatttgaag ttttagtttt ggatcaaatt
     9241 tatgattttg atggtttttt aataggcggc gcaaataacc ttttagttag cccaaaacct
     9301 aaaaatatag gaattttagg agatagtttt gattttatac aaattttaga tcggaataaa
     9361 gattttatac atcttcgcat aggctgcaaa acaaaatcaa gcaaaatgta tcgctttgcc
     9421 aaagaaaaca atcttaaggg ttttgagtat ttaagcaaaa ttcctggtac acttggcggg
     9481 cttttgaaaa tgaatgcagg acttaaagga gagtgtatca gtcaaaattt aatcaaaatt
     9541 gctacttctc aaggcgaaat tctaagagca aatataaatt ttgattatcg tttttgtcct
     9601 ttaaatacgc attttttttg ggctgaattt aaactaaact ttggctttga tacccttaaa
     9661 gatgaagctt taaaaaatgc aagaagcaac caacctagtg gagcaagctt tggctctatc
     9721 tttaaaaatc cgaaaaacga ctttgcagga cgtttaatcg aagctgtagg acttaaagga
     9781 tttagcaagg gagatgctat gttaagcgat aaacacgcaa attttttaat taataaaaaa
     9841 aatgcaagtt ttgaagatgc gttttttctt atcgaattgg ctagaaaaaa agtctttgaa
     9901 gaatttggca taaacttaga aaatgaagtg attattatct aaaaattttt caatatatct
     9961 ttaa
//
LOCUS       DAQSLY010000059         9877 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.059, whole genome shotgun sequence.
ACCESSION   DAQSLY010000059 DAQSLY010000000
VERSION     DAQSLY010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9877
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.059"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..657
                     /locus_tag="R2H98_001116"
     CDS             <1..657
                     /locus_tag="R2H98_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEE9024000.1"
                     /translation="NQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKENKFNMAIKH
                     FVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKIIPPANAKAI
                     SQPKKDTNMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIYPRQARKMRMSGEVL
                     VEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYEKTFHIKIPLVYKLS
                     "
     gene            complement(749..1559)
                     /locus_tag="R2H98_001117"
                     /pseudo
     CDS             complement(749..1559)
                     /locus_tag="R2H98_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1988..2082)
                     /locus_tag="R2H98_001118"
                     /pseudo
     CDS             complement(1988..2082)
                     /locus_tag="R2H98_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(2672..2788)
                     /gene="rrf"
                     /locus_tag="R2H98_001119"
     rRNA            complement(2672..2788)
                     /gene="rrf"
                     /locus_tag="R2H98_001119"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(3024..5930)
                     /locus_tag="R2H98_001120"
     rRNA            complement(3024..5930)
                     /locus_tag="R2H98_001120"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(6466..6542)
                     /locus_tag="R2H98_001121"
     tRNA            complement(6466..6542)
                     /locus_tag="R2H98_001121"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6506..6508),aa:Ile,seq:gat)
     gene            complement(6551..6626)
                     /locus_tag="R2H98_001122"
     tRNA            complement(6551..6626)
                     /locus_tag="R2H98_001122"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6591..6593),aa:Ala,seq:tgc)
     gene            complement(6729..8241)
                     /locus_tag="R2H98_001123"
     rRNA            complement(6729..8241)
                     /locus_tag="R2H98_001123"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(8819..9856)
                     /locus_tag="R2H98_001124"
     CDS             complement(8819..9856)
                     /locus_tag="R2H98_001124"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEE9024001.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSD
                     PKKIQEYFLKY"
BASE COUNT         3000 a         2105 c         1553 g         3219 t
ORIGIN      
        1 aaccaatctt cttttatcac tttatttgtt tttacacctt tattttttgt ttttctttat
       61 tctaaagatt ttttacacat acaacccaat gaaactatta aagaaaataa atttaatatg
      121 gcaatcaaac attttgtaca aaattcctcc gatatgaaac cgacacaacc tacacaaact
      181 atacaagagc cttcgaatgt gcaacccaaa gaacctgtgc aagaaataaa aaaaataaaa
      241 ccgagaaaag aaaaacctat cgctaaacct aaaaaaataa tccctccagc aaatgcaaag
      301 gcaataagtc aacccaaaaa agatacaaac atgcagcaac aaactccaca agccagctct
      361 taccaaagcg tatctttaac tagtaatagt gagcttttaa aagaaataaa atcagcaatc
      421 gatgaagccc taatctaccc tagacaagct agaaaaatgc gtatgagtgg ggaggttctt
      481 gtagaattta cctggacaaa agaaaagaaa ttagaaaatt taaaaatact taagccttca
      541 aaatatgatt ttctaaataa aagtgcttta gaaactatac gcatagcttc taaaaaattt
      601 ccacaatatg aaaaaacttt tcatataaaa ataccattgg tatataaatt aagctaaatc
      661 tttcacaata tactctattt ttaatacaaa tcactccagc tttgctaacg cttagaagta
      721 gaagcttcct agctaaagct aactagtatt agctaattcg aaaggctttg agtttatagt
      781 cctcaaggct aattcctaac ccaaacgact ttaatccacg ctttaagata ttatttgcag
      841 cattaatatc tctatgtaaa gtattgccac atttttcaca aagatacact ctatctttaa
      901 acataagatt ttttttgata tttccacata cactacaagt tttgcttgta tattgtggat
      961 tgacttttat aaagaatttg ccattatgct ttgctttata ctctagatat tgagagaatt
     1021 gatagaatga agtattaaga atagatttat ttaaaccact tttagctttt atattcttta
     1081 atttagctct tttacacata ttcttaattt gcaaatcttc aactgctagc aagtcaaatt
     1141 cttgtatgag ttttgaagtt atcttgtgat aactatcctt tttgatattt gaactttttt
     1201 catagatttt atttaatttt aattgtgttt ttttgaaatt atggcttaac tttgttttct
     1261 ccttttttgt ttttaatatt ctcctgcttt gttttctttg caatctttta atattcagct
     1321 ctactaagta gctttaataa ctctccactg cttaaggtaa tctcattgat atttaaatca
     1381 atgtcaactg cttttttaat atcaaaatct ttgctagata ttaaagaaac atttgattca
     1441 tcataaatga tactaaaagc taaatagtat ttattgtgat ttttgataat agtgatttga
     1501 ttaaacttat aagtatttgg taaatctctg tgataacgca ttttaaaaaa tgtattcata
     1561 agtctaaata tcttaaactt agtagtatca ctatctttga ttttgtaggc ttgattattc
     1621 caattaaagc tttgctttgc aaatttagag tttttaaatt tgggaaagcc ttttttttat
     1681 ctctaattgc ttgctctaag gcacgagaag attaatcctt gcttgttggg ttacaacact
     1741 tttatagctt aattctcttg cttttataag gctagtttta ttgattatct atcttacttg
     1801 cctttaaata actcctatct tttttatcta aattcttatt tttatcccac tgctcttgct
     1861 gtaaatttaa acaaatatta taggcttgat atagatgaaa cattgatgat taataagctt
     1921 ttgttgttct ttgtttaggt agaattctat atttaaaacc tttggttatt tgcattgctt
     1981 tgttccatta gggctttttt tctttttggt tatatatttt ttcttagggt aattatcttc
     2041 tatgccttga ttttctgcat attttttaag agtttctagc attattccgc ataggtattc
     2101 tataaaaata ctgattatgt caaataccta actagagccg tacaactaac actgtaagca
     2161 attcatctcc cacttaagaa gtgagagttt tattgaataa aaaaagataa atttaaagca
     2221 agtaatcttt ttttagacaa cactaaaccc ttgcatgtat ttacagcaat atttatttca
     2281 tcataaacaa cccccaaccc ataaaacctc aataaacact ataaaataaa cttgagtgat
     2341 taaaaatcca acccaattat tgaataaacc caacctacat aataaaatat aaactagaca
     2401 tataaagaac aattgacaca taaaaataga ttgaataaat aaacctatac aagtaaacat
     2461 aaaagattaa ttattgatac aaaagattca ataaataaaa agaataattg agatataaaa
     2521 acatataaac taagcaactc aaacaaccat taaattaacc caagctaatt aaacctataa
     2581 acataaaaaa ataattaaat ataaaaacaa cgattgacat ataaaaacta agattttaaa
     2641 tctataagaa taagataaag cagaattaac aagtccgcaa tgagctactt tccccctgcc
     2701 agtaaggcgt agtatcatca cccacgatgt gcttagcttc ttggttcggg atggagcaag
     2761 gcgtttccac atctgtataa tcacggacat tgttatttaa atattctttg aaaaattgaa
     2821 tttaagaata aaacttaatc ttttattctc tttcttcttt tcttatcttt tatctttgat
     2881 aagtttttat atagaatact taaaaaacaa tgttaagagc aagttctaat acaaacttta
     2941 cttgaaagat ttctattaaa ctctaaatat tatctatatt caaagtcttc ttaaaaacct
     3001 taacaaggaa gtgatgcttt attaaagata agccaaacgc tctattagta ctggtcagct
     3061 aaaggacttt catccattac acacccagcc tatcaaacta gtagtcttct agagagctta
     3121 gagaagattc atcttagagt tggcttcacg cttagatgct ttcagcgttt atcctttcca
     3181 aacttagcta cgctgcgatg ctcttggcag aacaacagct acaccagtgg tttgttcaac
     3241 ccggtcctct cgtactaggg tcaaatctct tcaatcttct tacgcccacg gcagataggg
     3301 accgaactgt ctcacgacgt tctgaaccca gctcgcgtac cgctttaaat ggcgaacagc
     3361 catacccttg ggacctgctc cagccccagg atgcgatgag ccgacatcga ggtgccaaac
     3421 ctccccgtcg atgtgagctc ttgggggaga tcagcctgtt atccccgggg taccttttat
     3481 cctttgagcg atggcccttc cacacagaac caccggatca ctaagaccga ctttcgtctc
     3541 tgcttgactt gtatgtcttg cagttaagct ggcttatacc tttatactct acgaacgatt
     3601 tccaaccgtt ctgagccaac ctttgtaagc ctccgttatt atttgggagg cgaccgcccc
     3661 agtcaaacta cccaccagac attgtcccac ttgaggataa ctcaagctgg ttagctaccc
     3721 aaataagaaa gagtggtatc tcaacaatgg ctcatataca actggcgtca tatactcaaa
     3781 gcctcccacc tatcctgcac attcttatcc aagtagcagt gtcaagctgt agtaaaggtc
     3841 cacggggtct ttccgtcttg ccgcgggtag gaggaatttt cacctccact acaatttcac
     3901 tggatccctc tttgagacag ctcccatctc gttacgccat tcatgcaggt cggtatttaa
     3961 ccgacaagga atttcgctac cttaggaccg ttatagttac ggccgccgtt tactcgggct
     4021 tcgatcaaga gcttcgctaa tgctaacccc atcaattaac cttcgagcac cgggcaggcg
     4081 tcacacccta tacatcctct tacgagttag cagagtgctg tgtttttggt aaacagtcgg
     4141 gagggactct ttgttgtaag tttccttgct ttcggagtaa atcctaatac aaagctaacc
     4201 acaccttata ccgaagatac ggtgctattt tgcagagttc cttaaagaga gttcttccac
     4261 gcgccttaga atactcatcc cacccacctg tgtcggttta cggtacgggc aacattagct
     4321 aaacttagaa acttttcttg gctcgacggc atcaggggtt cttctatcca tccgaagact
     4381 tcaaaaagcc tttcagttct cggagtattg ttatacggat ttgcctgtat aacctcctac
     4441 gaccttagac tagcacttcc atccgctagc ccccttagcc ctaagcgtcc ttccatcgca
     4501 cactaatgtt ggtattggaa tattaaccaa tttgccatcg tctacccctt tcggactcga
     4561 cttaggaccc gactaaccct acgatgacga gcatcgcgta ggaaaccttg ggtttacggc
     4621 gttaatgatt ctcacattaa ttatcgctac tcatgcctgc atgctcactt ctattcgctc
     4681 cagcactcct taccggtata ccttcgacgc aaatagaacg ctctcctacc acttagtaaa
     4741 ctaagtctac agcttcggta cttactttag ccccgttata ttttccgcgc aaaatcacta
     4801 gaccagtgag ctattacgct ttctttaaag gatggctgct tctaagccaa cctcctggtt
     4861 gtttaagtaa cttcacatcg ttttccactt aagtaagatt tagggacctt agctggtagt
     4921 ctgggttgtt tccctcttga cgacggattt tatcactcgc cgcctgactg ctgtgattac
     4981 atataaggta ttcggagttt gatagggttt ggtacattgg tgtatgccct agcccattca
     5041 gtgctctacc cccttatatt acgacacaac gctataccta aatatatttc ggagagaacc
     5101 agctatcacg aagtttgatt ggcctttcac ccctatccac aagtcatccc ggggcttttc
     5161 aacgcctatg ggttcagtcc tccactagtt cttacactag cttcaacttg ctcatggata
     5221 gatcacttcg tttcgggtct gcagcatctg actaagcgcc ctattcagac tcgctttcgc
     5281 tacggcttcg cgtttgctta accttgccag acaccacaac tcgcaggctc attatgcaaa
     5341 aggcagtcca tcaccctgta ttgctacata gggctctgaa tgattgtaag caaatggttt
     5401 caggttctat ttcactctga tcacctcagt tcttttcacc tttccctcac ggtacttgtg
     5461 cactatcgat ctggtattag tatttagggt tggatcgtgg tcgacccgga ttcagacagg
     5521 attcctcgtg tcccgcccta ctcaggatac tgctagctaa ggtttgtttt tcgcatacgg
     5581 gactatcacc ctctatggtt atactttcca gaatgttctg ctaaacttac ctcttgcaca
     5641 ttgcagtcct acaaccccca gtgcaagcac tgggtttgcc ctcttgcgct ttcgctcgcc
     5701 gctactgacg caatctctat tgatttcttt tcctgagggt actaagatgt ttcaattccc
     5761 ctcgttcgct cctatatagg taatgtatat ctctatacat tgggttgccc cattcggaaa
     5821 tctacggatc aaagcttctt gacagctccc cgtagcttat cgcagtctag tacgtccttc
     5881 atcgccttta ccagtcaagg catccaccat tcgctcttag tagcttacct tttttacctt
     5941 ttattattga ttctaaaacg catcacttcc ttgttaaagt ttttatgata agacttcttt
     6001 atcttaagac ggaaagcatt caaacactta atataaaact aaatgattta gtctcaacta
     6061 agcagtgagt ttgaaacttg tctttaattt ataatcctta aatctaatat tctctttatt
     6121 catagaagag aagacagcta aaagttaagt taaactaaag aaaagataaa taggttttat
     6181 cctttaacaa gtcctgtaaa attgttttta ttaaaacttg cttgtgactc ttaacaatga
     6241 taattaaaaa gaacatttag gtttaaaacc taaaggaagt atatatatta acataatcat
     6301 tataaatata aatgcataat gtatatgcta cttatatcta ttaaagtata ttcttttata
     6361 gttaaagata aaaaataaat ctaagtatag agtttatatt ttatatttaa tctattttat
     6421 atacttgctt tagattttaa agcttcttta ttcaaatctt ttttatggtg ggcctaacaa
     6481 gacttgaact tgtgacctca cccttatcag gggtgcactc taaccagctg agctataggc
     6541 ccttaataaa tggtggagaa tagcgggatc gaaccgctga cctcctgcgt gcaaagcagg
     6601 cgctctccca gctgagctaa ttccccataa acaattagct ttatcatcaa tctttgaaat
     6661 ctaaacaaga atcaattgag tttatatatt gaagtaatag ttgtgagact tattactttg
     6721 tactctagaa aggaggtgat ccaaccgcag gttctcctac ggttaccttg ttacgacttc
     6781 accccagtcg ctgattccac tgtggacggt aactagttta gtattccggc ttcgagtgaa
     6841 atcaactccc atggtgtgac gggcggtgag tacaagaccc gggaacgtat tcaccgtagc
     6901 atggctgatc tacgattact agcgattccg gcttcatgct ctcgagttgc agagaacaat
     6961 ccgaactggg acatatttta tagatttgct ccacctcgcg gtattgcgtc tcattgtata
     7021 tgccattgta gcacgtgtgt cgccctgggc ataagggcca tgatgacttg acgtcgtcca
     7081 caccttcctc ctccttacga aggcagtcta tttagagtgc tcggccgaac cgttagcaac
     7141 taaatacgtg ggttgcgctc gttgcgggac ttaacccaac atctcacgac acgagctgac
     7201 gacagccgtg cagcacctgt ctctaagttc tagcaagcta gcaccctctt atctctaaaa
     7261 ggttcttagg atatcaagcc caggtaaggt tcttcgcgta tcttcgaatt aaaccacatg
     7321 ctccaccgct tgtgcgggtc cccgtctatt cctttgagtt ttaatcttgc gaccgtactc
     7381 cccaggcggt acacttaatg cgttagctgc attactgaga tgactagcac cccaacaact
     7441 agtgtacatc gtttagggcg tggactacca gggtatctaa tcctgtttgc tccccacgct
     7501 ttcgcgcctt agcgtcagtt gagttccagc agatcgcctt cgcaatgggt attcttggtg
     7561 atatctacgg attttacccc tacaccacca attccatctg cctctccctc actctagact
     7621 atcagtttcc caagcagttt aatggttaag ccattagatt tcacaagaga cttgataatc
     7681 cgcctacgcg ccctttacgc ccagtgattc cgagtaacgc ttgcaccctc cgtattaccg
     7741 cggctgctgg cacggagtta gccggtgctt attccttagg taccgtcaga attcttccct
     7801 aagaaaagga gtttacgctc cgaaaagtgt catcctccac gcggcgttgc tgcgtcaggg
     7861 tttcccccat tgcgcaatat tccctactgc tgcctcccgt aggagtctgg accgtgtctc
     7921 agttccagtg tgactgatca tcctctcaga ccagttaagc gtcatagcct tggtaagcca
     7981 ttaccttacc aactagctga tactatatag tctcatccta caccgaaaaa ctttccctac
     8041 tcaacttgtg ttaagcagga gtatagagta ttagcagtcg tttccaactg ttgtcctctt
     8101 gtgtagggca gattaactat accttactca cccgtgcgcc actaatccac ttctagcaag
     8161 ctagaagctt catcgttcga cttgcatgta ttaggcacgc cgccagcgtt cactctgagc
     8221 caggatcaaa ctctccataa aaattataga tagtttaatc tttttcttca aagaaaaagt
     8281 tatgaaagat taaaagaaaa acttttaatc tttttaatta ttagattaaa tagattttac
     8341 ataattactt atgcctaaat ctttctggct caatcgatca cttatttaga tttcaaagat
     8401 tgactaataa gatttgaata acaatactaa gttaaaagaa caaaacaaaa aatcattttt
     8461 aaaagaaaag tttttaaatt aaaaaacaag atttataaaa aagcttttag tttataagat
     8521 aaaaaccaaa agagttaatt tataaaatct actaagctag tgaaacttta taatttaaaa
     8581 gattttaagt ccttttttca aaaaaaggaa atgaaagtat aaccaattaa acttaaaagg
     8641 ggattaaaca aaggattaaa tagtataaat atttgtgtaa gtatttggtg ggtttaaaaa
     8701 tggggggggg gattttaaat gataataaaa aatacaagat ataatatact attaatagga
     8761 ttgaaaggct tgacttaggg aagataagtt ccctaagttt agaaatattt aaaaaatttt
     8821 aatattttaa aaaatactct tgaatttttt taggatcact tgtttttgta agtgctaaca
     8881 taagcaaaac tcttgctttt tgaggattta aatcttcagc actaataaaa cctaattttt
     8941 catctgaatc actcacagca acacaacctg ctacaaccct tgaacttaca acaaccttaa
     9001 gccctttttt taaaagctct tttaaaacat ctttttgatt tttgtgtata cttcctgctc
     9061 cacttcctgc aacaactatg cccttagttc catgttcaaa taaagctttt gcagcgacac
     9121 cactaccatc atttgaatag ctataaagaa tatctacttt tggcaaactt gtgagtttgc
     9181 ttacatcaaa aggagcgttt tttgtgtgag ctttagtaac attattatag aaaaagactt
     9241 taccatctac tatataaccc aaatccccaa aatcaggaga agagaaagca tcaacattta
     9301 aactatgagt ttttactacg cctctagcgc ttaaaatttt atcatttata gctaccataa
     9361 cacccttatt cttagcttct ttattggcaa ctaatgccac tgcattataa agatttttcg
     9421 gaccatccgc acttatagca gttgatggac gcatagcgcc aactagaact acgggcttat
     9481 cacttttaat ggttaaattt aaaaaataag cagtttcttc catagtatca gtaccatgag
     9541 ttatcaccac accgtctatc ccctcagcaa aaagcttagc aattttttta gcaagcctta
     9601 accaaatttc atcacacata tttgaactat caatatttgc tatttgctcc caactaatat
     9661 ctgctaaatc tctaatttgc ggaactgctt taattaatac atctatatca atggctccgg
     9721 ccgtatatcc tgttgtagca atagtgctat caatgaagcc tgctatcgtt ccgcctgttc
     9781 ctaaaatagc aatccttgat ttagcttttt tcatacatac tcctataaaa agacaacata
     9841 taaataattt tttaatctct tgtatattaa tttttta
//
LOCUS       DAQSLY010000060         9824 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.060, whole genome shotgun sequence.
ACCESSION   DAQSLY010000060 DAQSLY010000000
VERSION     DAQSLY010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9824
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.060"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..568)
                     /locus_tag="R2H98_001125"
     CDS             complement(<1..568)
                     /locus_tag="R2H98_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEE9024002.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNITSCPIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQK"
     gene            complement(568..1188)
                     /locus_tag="R2H98_001126"
                     /pseudo
     CDS             complement(568..1188)
                     /locus_tag="R2H98_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(1252..1677)
                     /locus_tag="R2H98_001127"
     CDS             complement(1252..1677)
                     /locus_tag="R2H98_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEE9024003.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKFQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVIDETLRGKGIGQAFLKKIQIWAKNQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(1689..2777)
                     /locus_tag="R2H98_001128"
     CDS             complement(1689..2777)
                     /locus_tag="R2H98_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEE9024004.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHGWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            2876..5629
                     /gene="ileS"
                     /locus_tag="R2H98_001129"
     CDS             2876..5629
                     /gene="ileS"
                     /locus_tag="R2H98_001129"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEE9024005.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKRLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESTPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLASNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            5623..5733
                     /locus_tag="R2H98_001130"
     CDS             5623..5733
                     /locus_tag="R2H98_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024006.1"
                     /translation="MLENPIPNSIIITTVAVVLAFSALAVFLIKKTKENK"
     gene            5730..7091
                     /gene="gatA"
                     /locus_tag="R2H98_001131"
     CDS             5730..7091
                     /gene="gatA"
                     /locus_tag="R2H98_001131"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEE9024007.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASTNLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            7101..8558
                     /gene="guaB"
                     /locus_tag="R2H98_001132"
     CDS             7101..8558
                     /gene="guaB"
                     /locus_tag="R2H98_001132"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEE9024008.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            8555..8728
                     /gene="xseB"
                     /locus_tag="R2H98_001133"
     CDS             8555..8728
                     /gene="xseB"
                     /locus_tag="R2H98_001133"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEE9024009.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            8721..9497
                     /locus_tag="R2H98_001134"
     CDS             8721..9497
                     /locus_tag="R2H98_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEE9024010.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            9509..>9824
                     /locus_tag="R2H98_001135"
     CDS             9509..>9824
                     /locus_tag="R2H98_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEE9024011.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRVLMQNSFIPTGLISDKNGIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSIYIIVI
                     SCL"
BASE COUNT         3418 a         1316 c         1808 g         3282 t
ORIGIN      
        1 ttttttgagg atttttttca tcgttgcaat atcctaaagc caccaccaaa cttgatcttt
       61 ctttttgaat atcaagtgat aaataagaat taagcttttg tttatcaaaa ccacctatag
      121 ggcagcttgt tatatttaaa gcattagcac tgtaaagtat gctagctaga gctatatgag
      181 cttgttctct tgcataagat attttttctt cttgatttag agattttaaa aaaggcatat
      241 aagcatctaa gcgtttttga atttctgttt cactcatatc tctttttcta agtttttctt
      301 caaaataatc caaaaaatca agtcttgaaa tgatgataat taacgcagcg caatctttta
      361 catgtttttg ctggttgcaa attttagaaa gttcttcttt tcttttctca tcttgcacta
      421 ctataaattt ccaaggttcc agtcctaagg agcttgggct taatcttgct atttctaaaa
      481 tagaatttaa atcctctttt ttgagttttt catttttaaa atttctacaa gaatatcttg
      541 tgctaaaaat ttcaagttct tttttcatta tttttccttg taaaattcga cgacttcatt
      601 aaaatttaag cgttgagtag aatattttgg ttcatgggct ttatatccta aggataaaat
      661 tacagcagtt tcaaaaggat aagttaaatt aagaaaatca tcaactttag ctttttcaaa
      721 gccacctatc atacaagaat caatacctaa gctcattgca gctagtgaca tttgcatcat
      781 agcaagatag cattgaagtt gtgcataatg atagagttca ttatcattca ttgcattggt
      841 tttatgagta taaatttcta aaattttttg aaaattttct tcgctagaac ttgagaaacg
      901 acgcacttgt ttttgtgcaa attcatcttt gctttgaaga tcttttcttg ctagaaaaat
      961 aatattatga ctcgcacttg ctacattttg ttgattgtaa catagggttg agagtttaag
     1021 attgtgttat ttttgttcta atactacaaa tttccaaggc tcaaatccat gtgagcttgg
     1081 ggctaagact ccactttcta agataaaatg caaatccttt tcattgattt ttttatcatt
     1141 aaaaagttta caagctctgc gttttgaaat tagttcttta aaattcattt tattccttaa
     1201 aatcaaaaat aataatatta attataaaat gcaaagctta atcaaaaaat attatagttt
     1261 gatatttttc ttaaaaacaa aaccagattt ttcaaaaccc attttttgga tataaaattc
     1321 atgagcttgt gttctaaaaa aacttgaact tagttctaat tcttcatatc cttgattttt
     1381 tgcccaaatt tggatttttt tcaaaaaagc ttgacctata ccttttcctc ttaaagtttc
     1441 atctatgaca aaatcacaaa tataaagaca atgattatga taaagtacat taaagggcat
     1501 gactccacaa gctgctttgt agcttccctc attttcatag gcaaaaagtt tataatgttg
     1561 agtttgtgta gcaagttgga atttatctaa aaaatctttc aaagataggt tatttcttaa
     1621 ttgttttatc aagggataaa ttttttccaa gtcttctttt agcttaattt ctttcatttt
     1681 taaatccctt aaatttcaaa aatttcaggt tttaatttta aaagtaagca aaaagttgcc
     1741 aaaacagctt gttcttgcat aaattcacga tctccatcta aataaagcgt ttcttggata
     1801 aaagttccat ctctaaacat tgcacctata taaatagtgc ctgattttat ttttccctca
     1861 tctttttcgc caactactcc gctaatagct aaggcaaaat caggattagc tgttttaaaa
     1921 atacctttta gcataaaata aacacaacgt tcactgtatt cgccattatt ttctaagacg
     1981 ctttcgctaa ttccaagcca tccgtgtttg atgcggttgg aataacttac aatagaacct
     2041 tcaaaaattt cacttacacc tgaaattttg gttaaggtac ttgcacaaag tccacctgtg
     2101 caactttcag caaaagaaat ttttaatttt ttttctaaaa gtttagagct tataaaatgt
     2161 attggatctt tacctaaaaa taccttttgt ccaaaaagat tttttacgct atttaaaaaa
     2221 ccatcaagtt ttccaaaatt agcgcaagtg gccttaataa gcacaagatt atctaaaagc
     2281 ttggttgatt ttatacttat ctcataagat tttgttaggg tttgcagtag caatatagcg
     2341 ctttcatcat ccatgccaaa aatgcaaaaa tatgcaaaat ttaattttat atgcccaaga
     2401 agattgggta atttttcgct tggatttatt ttaacgacat taatttttga atttgaaaaa
     2461 ttacacacaa agctattttt actaaattct gctttatctg gaaccaaggt atcatctttt
     2521 aagataagat tatcatcatt taaagttgct aaaattttag caacagtcgc ataatgcaaa
     2581 gagcttgtaa ataaagtgat aaaatcatac tgatttaaga gattttcaag taaaaaaggt
     2641 aaatctttat cggttttatt ttgtatgcga atttcgttga tttctttaaa tttttcttca
     2701 taagttctat aaatataatt tttgaatttt tcgtttatag taagctcatc tcctataaga
     2761 taaagcaaat gtttcataaa ttttcctttt tttcttataa ttatagccaa aaacaaagta
     2821 gaaattaaag ctaatttgag tagaatttaa gattattaaa aattaggtgg aaaaaatgga
     2881 ctacaaagaa actctacttt tgcccagcac tacttttgct atgcgggcga atttagcgga
     2941 acttgaaccg caaagattta aaaaatggtt tgagcaaaat tatgcttatg aaaaaatgaa
     3001 agaaaatcgc aaaaatgcga aaaaaagttt taccttacac gatggccccc cttatgctaa
     3061 cggacatatc catataggac atgctttaaa taaaatttta aaagaaacta ttatcaaaac
     3121 gcattatttt aaaggtgaga gtgtgcgttt tactccaggg tgggattgtc atggtttgcc
     3181 tatagaacaa caagtagaag taaagcttgg agaaaagaaa aaaagcttaa gtaaaaaaga
     3241 aattcgtgag ttttgcagac aacatgcgag tgaatttgta gatatccaaa gagaagaatt
     3301 taaaaattta ggcattattg cagattggga taagccttat ttaactatga aatttgagtt
     3361 tgaagcagcg atttatagaa ctttatgcga gattgctaaa aaaggcttac tttgcgagcg
     3421 ttctaagcct gttttttgga gttgggcggc aaagtcagct ttagcggaag ctgaagtaga
     3481 gtatcaagat aaagaagatt attctatctt tgtggctttt gatttagatg taaaagcttg
     3541 cgaaaaatta ggcgtttcaa aagcaagcgc agtgatatgg acaactacgc cttggacttt
     3601 ggtggctaat caagctatag ctttaaatcc taatgaaaat tatgtgatca ccaaagaggg
     3661 tttgattttt gcaagtgctt tacttaaaag tatggtagaa aaaggactta caagtggaga
     3721 aattcaaaaa gaactaaacg caaaagaatt tgaaaaactt gaagctatca atcctttaaa
     3781 tggaagaaaa tctgttttaa ttatgggcga gcatgtattg atggatggtg gaagtggact
     3841 tgtacatact gcaccaggac atggcgaaga tgattattat gcttgtttga aatatggcat
     3901 tgaggtttta atgcctgttg atgatagtgg atgttatgat gaaactttaa gagctaaaag
     3961 gcttttgcct tctcatttgc ttgaagagtt tataggtctt catattttta aggccaatga
     4021 aaaaatttta gaacttttag gcgaaaaact tttacattct tctaaattta tacactctta
     4081 tccattttgt tggagaacgc ataagcctgt gatttataga gctactaaac aatggtttat
     4141 tttaatggat gaaccaaaac ttcaaggaaa aactttaaga gagtgtgcaa aagaacaact
     4201 tttaaaaaca accttttatc cgcaaagtgg ggtaaaaaga ataggttcta tggtggaaaa
     4261 tcgcccagat tggtgtattt caagacaaag ggactgggga acgcctatag ccttttttag
     4321 ggataaaaac actaaagaag tgatttttga tgatgaactt tttgactttg tagcggctat
     4381 ttttgaaaaa cacggcgctg atgcgtggtg ggagtttgaa atcaaagatt taattcctac
     4441 aaattcaaaa tacaacgctg aaaatttaga aaaagtatat gatattttag atgtttggtt
     4501 tgatagtgga agtactttta atgcggtttt aaatagcgga ctttatgacg caggagaaaa
     4561 aagagcaagt atgtatttag aaggaagcga tcaacatcgt ggttggtttc aaagctcttt
     4621 gcttgtaggt acagcgatca atgaaagcac accttatgaa agcattttaa ctcatggttt
     4681 taccaccgat gaaaaagggc aaaaaatgtc taaatctaaa ggcaatgtga ttgctcctga
     4741 atatgtagca aaaacctatg gagttgaaat tttaagactt tggatacttt taagtgatta
     4801 ttcaagtgat ttaaaaattt cagacaatat cttaaaacaa gtgggtgaac aatatcgcaa
     4861 aataagaaac actataagat ttttacttgc caatacaaat gacttaaaag atttagaagt
     4921 taaagaattt agctttattg ataaatggat attaagccgt gcaactaaag tttttaaagc
     4981 aagcaaagag gcattttttg cttatgaatt tgctaaaggt tttagtttgc ttttaaattt
     5041 tttaagtgcg gatttaagtg ggatttatct tgatatcagt aaagatagac tttattgtga
     5101 tagcgaaaat gctcaaagaa gaaaatccgc tcaagtggct atggctttga tagcaaaaga
     5161 gcttttaaat ttacttgctt caaatttaag ctatagtgta gatgaggctt tagaacatgc
     5221 taatgtttta atcaaaggtg atgcaaaaga tgtatttgat ctaagtttaa ctcaagattt
     5281 tgattatgat tttggtatag atgatacatt tttaatgagt gctagagaga aattttttga
     5341 acaaattgat atacttaaaa aagataaaat catcaaatct actttggaat taaatttaaa
     5401 catcagtttt aataaattcc caaatgagga attagccgat tggtttatgg taagtcaaat
     5461 cagcaatgaa aatgaagaaa ttttggctga atttgaagta gagaatgaga aatttaaaat
     5521 caccaaagct tcgctttgta aatgcccaag atgttggaaa cttcaaagta aagatgaaga
     5581 aacaccttgt ttaagatgtg aagaagtttt aaaagggatt caatgctaga aaatcctatt
     5641 ccaaatagca ttatcattac aactgtagcg gtggttttgg cttttagtgc tttagcagta
     5701 tttttgatca aaaaaacaaa ggaaaataaa tgataacttt aaaagaagct ttaaaatact
     5761 ccaaagaaga acttgaaaat ttaaaaaaag aactcaatga aaaagcaaaa aaagaaaaaa
     5821 aaataggtgc ttatatcgaa caatttttag ataaagactt aagtgtttca ggtgaaggtg
     5881 tgcctgtagc tataaaagat aatatcagcg taaagggctg ggagcttact agtgcgagta
     5941 agattttaca aggttatatc gccccttatg atgcaagtgt gattgttaat ttaaaagcta
     6001 atggtttttc tccttttggg cgttgcaata tggatgaatt tgctatggga agttcaacag
     6061 cgagttctta ttatggcaaa actttaaatc ctttaaattt tgagcgtgtg ccaggtggtt
     6121 caagtggcgg aagtgctgct gcggtagcgg gtggcttggc tttggcaagt ttgggttctg
     6181 atacaggagg atctgtacgt cagcctgcag ctttttgtgg ttgcgtagga tttaaaccga
     6241 gttatggaag agtgagtcgc tatggcttag cttcttattc ttcaagtttg gatcaaatcg
     6301 gggttttaac gcaaaatgta gaagatgcgg caattttata tgatgcgatc gcaggatatg
     6361 acaaaatgga tagcacgagt gcaaatatcg agtttatcaa aaccgctcca aatttaaatg
     6421 caaataaaaa attaaaaatt gcagtgattg aaaattatgt caatgatgca gatagtgaag
     6481 taaaaaatgc acttttaaaa accatagata tgttaaaagc taatggacat gagattgtat
     6541 ataaaaattt gcttgattct aagtttgata ttgcggcgta ttatatcatc gcaacagctg
     6601 aagcaagtac aaatttaagt cgttatgatg gggtgcgtta tggcaagcgt tctgaaaata
     6661 tccaaaattt aaaagaaatg tatgtaaata cacgcagcga aggttttgga gaagaagtaa
     6721 aaagaagaat tttgttagga acttttgttt taagcagtgg atattatgat gcgtattata
     6781 ttaaagcaca aaaagctaga gcttttatta aggcaaaata tgaagaaatt ttgcaagatt
     6841 gtgatcttat ttttatgcct gtaactccta caacggcttt taaatttgat actcaaaaaa
     6901 gccctatgca aacttattta gaagatgttt atactatctc tgtaaattta gcaggacttg
     6961 gaggcattag tgtgcctgtt gcaaaagata aagaagggct taatatatca gcacaactga
     7021 tttgcaaagc ttatgatgaa caaaccttgt tagatggggc tttaagttta gaacaaatga
     7081 ttaaacatta aggatgaaag atgaaaattg taaaaagagc tttaactttt gaagatgtat
     7141 tattgcgtcc tgggtattct gaagttctac ctaaggaagt aaaaattcac actaaactaa
     7201 caaaaaatat cactttaaat atgcctttaa tctctgcggc tatggataca gttaccgaac
     7261 acagagctgc tatcatgatg gcaagacttg gaggacttgg agtgattcat aaaaatatgg
     7321 atatagcctc gcaggttaga gaagtaaaaa gagtgaaaaa aagcgaaagc ggggtgatta
     7381 tcgatcctat ttttgtaagt cctaaggcaa gtgttgcgga ggctttagaa attatggcag
     7441 agtatagaat ttcaggtgtt cctgtagtag atgaagataa gaaactaata ggcatactca
     7501 ccaatcgtga tttaagattt gagagtgatt tttcaaattt ggttgaaaat gttatgacta
     7561 aaatgccttt aatcactgct ccaaagggtt gtactttaga tgatgcggaa aaaattttca
     7621 gtaccaacaa agtagaaaaa cttcctatag tggatgaaca aggacgcttg gaaggactta
     7681 tcactataaa agatcttaaa aaacgcaaag aatatcctga tgccaataaa gataattttg
     7741 gaagattacg cgtgggtgcg gctataggag tagggcaaat ggatcgtgtg gatgctttag
     7801 ttgaagcagg cgttgatgtt gttgtgcttg attctgcgca tgggcattct aagggtatta
     7861 ttgatacagt aaaagcaatt aaggctaaat atccaaattt agatcttatc gcaggaaata
     7921 tcgccactgc agctgcagca aaagcacttt gtgaagcagg agtagatgcg gttaaagtag
     7981 gtattgggcc aggaagtatt tgtactacac gtattgtttc aggtgtgggc gtgcctcaaa
     8041 tttcagccat tgatgaatgc gtagaagaag caaataaatt tggcgttcct gtgatagccg
     8101 atggcgggat caaatattca ggtgatatcg caaaagcttt agctgtgggt gcgagttctg
     8161 ttatgatagg atcgctttta gctggaacag atgaaagtcc aggagagctt tttacttatc
     8221 aaggaagaca atataagtct tatcgtggta tgggctcact tggtgctatg caaaagggaa
     8281 gttcggatag atattttcag caaggtactg ctcaagataa actcgttcct gaaggtatag
     8341 aagggcgtgt tccttatgtg ggaagtataa gaagcgtggt gcatcaactt ttaggaggtt
     8401 tgcgttcttc tatgggttat gttggggcta aagatataga agattttcaa aaaagagccg
     8461 aatttgttga aattaccact gcaggactta aagaaagtca cgtgcatgat gttactatca
     8521 ctcatgaagc accaaactac aaggttaatc atcaatgagt tttgaagaaa atttaaaaca
     8581 cgctaatgaa tctttggaaa aattaaataa tcaagagctt gccttagatg aaagtgtaaa
     8641 aatttataaa gaaggtttag agagtatcaa aaaagcaaga cttgagcttg aaaaagcaaa
     8701 attagaagtg gagcaaattg atgagtaaaa tagcagcttt acagtttcca actttagctt
     8761 taagtgaatc aaggcttgat tattatctta aagcttcaaa agacaatgga gtaaatttag
     8821 tagttttggg agaatatgtg atcaacagtt tttttacaga acttttgcat atgccaaaaa
     8881 atatgataaa agaacaaagc gaagctaaaa aagaaagctt gattaaactt gctaaaaaat
     8941 acgaattaga aatcatcgct ccttatgtaa gcgttgaagc taaaagttat aaaaaacttt
     9001 gcttaaaagt tactccaaat ggtgtgaaaa gttatgaaca gcaaatttta atgccttatg
     9061 aacattggaa tgaagaaaaa tttttcagca acaaaactcc atcagaatta aaaattttta
     9121 cttttaatta tgaaaaatta aaatgtgctt tgctttttgg ttttgagaca cattttgata
     9181 ttttttggca acagattatg gcgaaaaaaa ttgatttggt tatcgttcct agtgcttgta
     9241 cctttgaaag caaacaaaga tgggaagaac ttttaaaaac aagagctttt ttaaattcta
     9301 caagcatttt aagagtaaat cgcataggca aaacaaaaga tgagtggaat ttttacggcg
     9361 atactttgtt tattaatgct tttggtgaga tagaaagtaa attgggttct gaagaagaaa
     9421 tgcttattat agagcctaaa aaaagtgatg aagcaagaaa actttggggt tttgataaaa
     9481 ttcttaagaa tttttaaaga aggtgaatat gagaaaaatt ttacttcaaa tttttatttt
     9541 tagtgtatta tttatagtaa cttttaccat taatcgtgtt ttaatgcaaa attcttttat
     9601 ccctactggt ttaattagtg ataaaaatgg aatcttttta atgtatcttt taggtgtttt
     9661 tcatgatata agatttttaa gcgcagcgtt tttaccattc ttgctttgtg gttttttaag
     9721 tttaattttt tctaatataa aaataaataa taagttagta atatatagta aaaattttta
     9781 tttcattttt tcaagcattt atataattgt tatttcttgt cttt
//
LOCUS       DAQSLY010000061         9564 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.061, whole genome shotgun sequence.
ACCESSION   DAQSLY010000061 DAQSLY010000000
VERSION     DAQSLY010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9564
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.061"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..219
                     /locus_tag="R2H98_001136"
     CDS             <1..219
                     /locus_tag="R2H98_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEE9024012.1"
                     /translation="FTLIDKNLNLLIKNLNTEELNNFLKEYLSFLKYEKNEEILQQSF
                     RNLNGIFGNKNFTAYDLGFSIQNNDEPF"
     gene            301..573
                     /locus_tag="R2H98_001137"
     CDS             301..573
                     /locus_tag="R2H98_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEE9024013.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            560..1123
                     /locus_tag="R2H98_001138"
     CDS             560..1123
                     /locus_tag="R2H98_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEE9024014.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENKQENEFEDGHA
                     LNYQDFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIEN
                     VMPHFWANNRFIKLQEKLMGFKSEIKT"
     gene            1107..2390
                     /locus_tag="R2H98_001139"
     CDS             1107..2390
                     /locus_tag="R2H98_001139"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEE9024015.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPNLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKRALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2394..2705
                     /locus_tag="R2H98_001140"
     CDS             2394..2705
                     /locus_tag="R2H98_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEE9024016.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKI
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2702..3796
                     /locus_tag="R2H98_001141"
     CDS             2702..3796
                     /locus_tag="R2H98_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEE9024017.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNARKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3793..4638
                     /locus_tag="R2H98_001142"
     CDS             3793..4638
                     /locus_tag="R2H98_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEE9024018.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4648..6546
                     /gene="tkt"
                     /locus_tag="R2H98_001143"
     CDS             4648..6546
                     /gene="tkt"
                     /locus_tag="R2H98_001143"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEE9024019.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFLLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            6548..7657
                     /locus_tag="R2H98_001144"
     CDS             6548..7657
                     /locus_tag="R2H98_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024020.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALIVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVVLTSAGI"
     gene            7658..8380
                     /locus_tag="R2H98_001145"
     CDS             7658..8380
                     /locus_tag="R2H98_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEE9024021.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINEKDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8383..9273
                     /locus_tag="R2H98_001146"
     CDS             8383..9273
                     /locus_tag="R2H98_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEE9024022.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGVKAPVRLLGVEVGSVEEIGIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIHGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKDIKESTMILKNFIKKADEKLNTYDDIKASLIQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9273..>9564
                     /locus_tag="R2H98_001147"
     CDS             9273..>9564
                     /locus_tag="R2H98_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024023.1"
                     /translation="MLKQLFYILTFIFILCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILS"
BASE COUNT         3511 a         1376 c         1640 g         3037 t
ORIGIN      
        1 tttacgctta ttgataaaaa tttaaatctt ttaattaaaa atttaaatac cgaagaatta
       61 aataattttt taaaagaata tttaagcttc ttaaaatatg aaaaaaacga agaaattctg
      121 caacaatcat ttagaaactt aaatggaatt tttggtaaca aaaactttac agcttatgat
      181 ttaggattta gcatacaaaa taatgacgaa cctttttaat ttatttaaat ttcaagcctt
      241 aatttacctt tttttaaaca caatcacgct aaagtatata aaaattttta aggataaatt
      301 atgatgcctt ttagtgatga agagcttata aatcctgtta aagcaagttt agaaaagagc
      361 ttgcctatgc ttgaacgtga tggcggaggg cttgaatttt taggaattaa aaatgggatc
      421 gtttatgtcc atttaatagg agcttgtaaa ggctgtgcat cgagtggaac aacgctaaaa
      481 tacggtcttg aaaggcaact taagattgat attcatccgg aaatcactat aatcaattta
      541 aacggcggag cagacgaatt tgcaaaatta taaaaaactt ggaattgaac atttttacaa
      601 gaaagatttt aaaactgcaa aaatgtattt ttctatggct tatgaaaaac gcaaaaataa
      661 acgcttgcta aattttatct gcctttgtga tcttgcttta aaatctccta aagaagcttc
      721 tttacttttt gatttttata tagaacatta caaaatctct agcattgata aagacttaga
      781 agaaatttta agtacaattg aatttaaaaa acaggaaaac aaacaggaaa acaaacagga
      841 aaacgaattt gaagatgggc atgcgttaaa ttatcaagat tttttaaaaa gcgaagaaga
      901 acttggcttt caaaaaagtt ttgaaaatat cattaacagc actaaattag ttattgataa
      961 tcgtgatgat tttttagatt ttttggaaaa attacttgat aatggctata aagatatgac
     1021 tttaaattac atagaaaatg ttatgcctca tttttgggca aataatagat ttatcaaact
     1081 ccaagaaaaa ctcatgggat ttaaaagtga aattaaaact tgaaaattca ttcattacag
     1141 ataacacctt agagtgtgaa aaagaatgct tttttttgca aaccacacaa aatgctaaat
     1201 ttcacgctca agccttagaa aaaggtgcaa aaatcattga tgtaaatgag tgtaaaaaac
     1261 ttttaaaaat cgatgaaaag attcaaatca taggaatcac aggaaccaat ggcaaaacca
     1321 caaccgcagc agcgatttat tctatcttat tggatttagg ttataagtgt gggctttgtg
     1381 ggacaagagg agcttttatc aacgatgaac aaatcgatga aaaatcctta accacctccc
     1441 ctattcttaa aaccttagaa tacctacaaa tagccactca aaaaaaatgt gattttttca
     1501 tcatggaagt aagctcacac gcgctcgttc aaaaccgcat cgaaggctta aattttgctg
     1561 ctaaaatttt taccaatatc actcaagatc atttagattt tcacggtact tttgaaaatt
     1621 ataaagaagc aaaagaactt ttttttaccg atgagagttt aaaatttatc aacaaagatg
     1681 ctttggctat taaatttaat gtgcgtaatg cttttactta tggcatagaa aatcctgctt
     1741 tatatcaaat caaagcttat tctttagaag aaggcattag tgctattgta acaaataaaa
     1801 atcaaacttt tcacatagac tcgcccttgc taggactttt taatctttac aatcttctag
     1861 ttgctagtgc ttgtgtgaat gaactcgtaa agcctaattt aaaagacttg gaaaaagcta
     1921 tcagtggatt tggcggggtt tgtggcaggg tagaacaagt agcaaaaggt gtgattgtag
     1981 attttgctca tacgcccgat ggcattgaaa aagtgcttga cactcttaaa aataaaaaac
     2041 tcatcgttgt ttttggagca ggtggagata gagataaaac caaacgccct ttaatgggaa
     2101 aaatcgtcga acattttgca aaaattgcta tcattacaag tgacaatcca cgcagcgaag
     2161 aaccaaaaac catcatggaa gaaattttat caggctttac taaaaaagaa aaagttttaa
     2221 tgatagaaga tagaaaagaa gctataaaaa gagctttaga actaaaagaa aatgacgatt
     2281 tagtcgttat tttaggcaaa ggtgatgaaa ctactcaaga aattaaaggg ataaaatatc
     2341 cttttagtga taaagtagtt gttaatgaaa ttttaaaaaa tcaaggataa tcaatgtttg
     2401 aaaatatgga tttttctaaa atgggagaac ttttaaatca agttcaagaa aaagcaaaaa
     2461 atatagaact agaacttgca aatcgtgaat ttagtgccaa aagtggagca ggacttgtta
     2521 aaataagtgc caatggaaag ggtgaaatta tcgatgttag cattgatgat tctttacttg
     2581 aagataaaga atccttgcaa attttactta tttctgcaat taatgatgtt ttggctatgg
     2641 ttgcacaaaa tcgttcaagt atggcgaatg atgttttagg cggttttgga ggtatgaaat
     2701 tatgaaaaaa attttaatta tttgcatgct ttttactttg tcttttggta tagaaagacc
     2761 taaatttgaa gattttttag caggttatga aagaaataag gcaagcatgc tcaactatga
     2821 aggaatgcca gcttttgcac tcagtgaaaa tttacttgct gtgttaaaac agcctaatgc
     2881 taagcttaac aaatatgtaa aatacgatcc atttttaaat ttatatcttg taagaactga
     2941 ctttagccta atccctactc ctatgggtga tgaagaaaaa cttactcgta atgattgggt
     3001 tggaatttgg gatcctaata aaccttatat agggcatatt aagtatttag ctcaaaatat
     3061 tgatgaaaaa gatcaacttg attttaattc taaaatagga cttttaggga ctccatgctg
     3121 tgaaatgatg gggattgctt taaataatag ctcttttata ggcaatcgct atttaaaaca
     3181 ttttatgaaa tataacgatg tttattgggg ggatattggc gttgattttg ttgttcgaga
     3241 aaataaaatt tatgttaaca atgcaagaaa aaatccacaa tttttaatca acgatcaagt
     3301 tataagtgtt gatggcttgc ccgccaatga tttaagaaaa ctcaatgaaa aaattctttt
     3361 tgcagatcgc ggaagcactc tttattttca agtgttgcgt gataatatgg atttaaatat
     3421 ttctactgaa gtttttgcaa aagatttgag caaatttaac cttcctgatt ctaaaccaaa
     3481 accaaaaatt acaaatttca caagcaatct tggtttaacg gttaatacta gtcttgttgt
     3541 aaccaaaata gatccaaaat caaaagcatc aaatgcagga tttatggtag gagataaaat
     3601 tttacgcgtt aataatatta ttttaaataa ttttaaagaa ttacaaaata ttttaagtgc
     3661 tggtaatgac tttagcatct taattgaacg caaaagtact aaattacctt tatcaaattt
     3721 caacaatgaa ctaggcggaa atgccaactc aggtggcgat ggtaaatttc aatttttcat
     3781 aaggcttact aagtgaattt aaaagaactt tttatccatc acttagaaaa aaatctacct
     3841 aaagttgaaa gctttcatcc tttttttaat gaagctttag cacttatgtt aaaagcgggg
     3901 ggaaagcatt ttcgcgcaca attgctttta agcgtagtac aaagcaataa acctgaactt
     3961 ttaaatcaag ctttagatgt ggctttagct ttagagttta tccatactta ttcactcata
     4021 cacgatgatt tacccgctat ggataatgca gactttagac gaggaattcc aaccttacac
     4081 aaaagctacg atgaaactac agccatctta gtgggtgatg ctttaaatac tgaagctttt
     4141 ttagttctaa gtcatgctca tttaaaagat gaaatcaaaa tcaaactcat caaaaccctt
     4201 gcctttaatg caggacttaa tggaatggtc ataggacaag ctattgattg tttttttgaa
     4261 gacaaaagac tgagtttaaa tgaacttgag tttttacaca cacataaaac cgcaagatta
     4321 atcgctgcag ctttaaaaat gggttgtgaa atttgcgaac ttaacaacga agaaagcaat
     4381 caaatttaca aacttggttt aaaactagga ctgatttttc aaatcaatga tgatattatc
     4441 gatgtaacca caagtcaaga acaaagcgga aagcctacta acaacgatat tcataaaaat
     4501 tcttttgtca atttacttgg acttgaacaa gccataaaaa caaaagaaaa tcttcttagt
     4561 gaatgcgaac aagacttaga aaaacttaat gaaaaactcg cacaaatgat acaaaattta
     4621 ataattcaat acttataaag gcaaaaaatg gacattcaaa ttttacaaga acaggcaaat
     4681 actctaagat ttttaagtgc tgatatggtg caaaaagcaa actcaggaca cccaggtgca
     4741 cctttgggtt tagcagatat tttaagtgtt ttaagttatc atttaaaaca caatcctaaa
     4801 aatcccactt ggctaaaccg cgatagactt gtattttcag gcggacatgc aagtgctttg
     4861 ctttatagtt ttttacattt aagcggctat gacttaagct tagaagatct taaaaatttc
     4921 cgccaacttc attctaaaac ccctggacac cctgaaattt caactcttgg agtagaaatc
     4981 gctacaggcc ctttaggaca aggcgttgcc aatgctgtag gctttgctat ggcagcaaaa
     5041 aaagcacaaa atttgctagg cagtgattta atcgatcata aaatttattg tctttgcgga
     5101 gatggggatt tacaagaagg catttcttat gaagcttgtt ctttagcagg acttcacaaa
     5161 cttgataact tcatacttat ttatgatagc aacaatatct ccatagaagg cgatgtaggt
     5221 ttagccttta acgaaaatgt aaaaatgcgt tttgaagcac aaggatttga agttttaagt
     5281 ataaatggac acgattatga agaaatcaat aaagccttag aacaagctaa aaaatccaca
     5341 aaaccttgtc ttatcatcgc aaaaacaact atagcaaagg gtgcaggaga gcttgaaggc
     5401 agtcataaaa gccatggcgc acctttgggt gaagaagtga ttaaaaaagc caaagaacaa
     5461 gcaggttttg atccaaatat cagttttcat atcccacaag caagcaaaat ccgctttgaa
     5521 agtgctgtag aacttgggga tttagaagaa gcaaaatgga aagataagct tgaaaaaagt
     5581 gctaaaaaag aacttttaga aaggctatta aatcctgatt ttaacaagat agcttatcct
     5641 gattttaaag gaaaagatct tgctacaaga gatagtaatg gtgaaatttt aaatgtttta
     5701 gctaaaaatt tagaaggatt tttaggtgga agtgcagact taggcccttc gaataaaaca
     5761 gaacttcaca gtatgggaga ctttgtagaa ggtaaaaata tccattttgg tatcagagaa
     5821 cacgctatgg cagcgattaa caatgctttt gcaagatatg gaattttctt accattttcg
     5881 gcaacttttt tcatctttag cgagtactta aaacctgccg caagaatagc agctctaatg
     5941 aaaatcaaac attttttcat tttcacacac gatagcatag gcgtgggcga agatggacca
     6001 acacaccaac ctatagaaca acttagcact tttagagcta tgccaaattt tttaaccttt
     6061 agacctgctg atggggtgga aaatgtcaaa gcttggcaaa tagccctaaa tgctgatatt
     6121 ccgagtgctt ttctgctttc acgccaaaaa ctcaaagctc taaatgaacc tgtttttgga
     6181 gatgtaaaaa atggagcgta tttactcaaa gaaagcaaag aggctaaatt tacactttta
     6241 gcaagtggaa gtgaagtttg gctttgttta gaaagtgcaa acgaacttga aaaacaaggt
     6301 tttgcttgta atgttgtttc catgccttgt tttgaacttt ttgaaaaaca agataaagct
     6361 tatcaagaaa gattgttaaa aggtgaagtt ataggtgttg aagcagcaca ttctaatgaa
     6421 ctttataaat tttgccataa agtgtatggc atagaaagtt ttggagaaag tggcaaagac
     6481 aaagatgtgt ttgaacactt tggatttagc gtttcaaagc ttgtaaattt tatccttagc
     6541 aaataaaatg aatacaaatt tcaaatttca aaataacact ctttttatct ttggaatttg
     6601 ggataaaaca agcatttata agttaaaaat aaaagatttt ttagctttga tccaaagcaa
     6661 ggaagtgatt tttgatttta aagatctaaa agcaatcgat accgctggag tgagattttt
     6721 ccttgctttg gaaaatgatc ttaaagataa aaatattaaa atcaccaaag aaggcttaaa
     6781 ttcacgcttt caaacccttt ttgaactttg tgaaaaaaac taccaaagac taagcaaaac
     6841 aaaaaaatca cataaaaatt tcagtgaata ctttatcgat cttggaaaat taagtttaga
     6901 acttttaaaa attttaagaa aattcatcaa tttcacagga gcttttttca caagtctttt
     6961 tttatgcctt aaaaatccta aaaattttcg ctttattgct tttttatatc atatagaaaa
     7021 ttctgctttt aaagctttgc ctatagttat tttaaccgct cttttagtag gagtggtttt
     7081 agcctatcag gctgcttatc aactcgcaca atttggagcc aatattttca tagtggattt
     7141 gatgggaatt tcagccacta gagaacttgc acctttaatc gctgccatag taatcgcagg
     7201 aagaagtgca agttcttata ccgcacaaat tggagtgatg aaaattactg atgaaattgc
     7261 agctatgaat actatgggtt ttcgttcttt tgaatttatt attattccac gtgtcatggc
     7321 tttgatagtg gctatgcctt taatcgttgc cattagtgat gcgatcagta ttataggtgg
     7381 aatgatggtt gcaaaattaa atcttgatat ttcttttgcc gaatttttaa gacgttttag
     7441 agaggctgta gatataaaac atatctttat aggacttgca aaagcaccta tttttggatt
     7501 tttaatagga cttattgctt gttttcgtgg ttttgaggta aaaaacacta cacaaagcat
     7561 aggaatttat acaacaaaaa gcgttgtaaa tgctattttt tgggtgatag cttttgatgc
     7621 tttattctct gttgttttaa cttctgcagg aatttaaatg gttattaaag cgcaaaatat
     7681 cattacaaaa tttggagaaa aaattgtcca tgatggcgta agttttgaaa tcaaaaaaaa
     7741 cgaaattttt ggtattttag gaggtagtgg aagtggaaaa tccgtccttt taaaacaaat
     7801 gcttatgctt gaacattttg atggtggaga atatgaaatt ttaggctata aacttaaaaa
     7861 tatcaacgaa aaagatgcac ttgctttgcg taaaaaatgg ggtgtggttt ttcagtttgc
     7921 tgcacttttt agctttttta atgtttatga aaatatcgcc attcctttaa aagaatacac
     7981 tcatttagat gaaaatagca tacaagaact ggttttaatg aagctaaaaa tggtaggctt
     8041 aaacgaaagt gttttaaaac aatttccaag cgaacttagt ggcggtatgc aaaaaagagt
     8101 ggcaattgct agagctttag cacttgatag taaattgctt tttttagatg aacctacttc
     8161 aggacttgac cctcatagta gtcgtgaatt tgacgatttg gttttagagt taaaaaaaag
     8221 ttttgatcta aatatcattt tggttacaca tgataaagaa agtatgaaaa atttactcga
     8281 tcgctttatc attttagaaa ataaaaaagt tggattttgc ggcacttatg aagaattacg
     8341 cttgcaaaat gaacgacttt ttaaaagatt tatggagtaa aagtggaaaa tagagcaaat
     8401 tatttttttg taggactttt tgtttttgga gtattttttg caagccttgg tttcatactt
     8461 tggcttggtg gatactctaa agaagaaagt tttaagtatt atgaaattca cacacaagaa
     8521 tccgttgcag gacttggcgt aaaagcaccc gtaaggcttt tgggcgtgga agtaggtagt
     8581 gtagaagaaa ttggcattta taatcaagat gaactcggcg ttaacatacg cattaaggtt
     8641 aaaaataaca cccctataaa agaagatact tttgctactt tgcaacttca aggtattaca
     8701 ggacttaaat ttgtccaact tcaaggcgga agtaaaaata gcaaagatct agtatctatc
     8761 cacggaaaac ttccggtcat tccttttaaa gaaagttttt tagcgaccat agacagacaa
     8821 agtgaacata ttttttcttt ggttaaaacg gccgatgata aatcaaaaga acttttaagc
     8881 gaaaaaaatc ttaaaaatct agaaatcctt ttgcaaaatc tagcagaact aagtgcaaat
     8941 ttaaacgcta attctaaaaa tttaagcctt aatctttcaa acgcaagttt aaaaatagga
     9001 aaaatggctg ataatataag ccttagtgcg caaaatttca actccagtct taaagacata
     9061 aaagaaagca caatgatttt aaaaaatttc ataaaaaaag ctgatgaaaa attaaacact
     9121 tatgatgata ttaaagcatc tttaattcaa aatttagagc tttttaaacg agttttaatt
     9181 gaaagcaata ttctaataga aaatttacaa aacagccctg ctgatttgat ttttaaagaa
     9241 accaaaccta aactaggacc aggagaaaaa taatgctaaa gcaattattc tatattttga
     9301 cttttatttt tatattatgc ggatgctctt taagacacga aaccatcaat aaaaatgaaa
     9361 atatcatatt aaaagacgaa ggaatagact caaatatttt ttttaaaaaa accggtaaaa
     9421 ttcttaaaat tcgcaatgca aatgcacctt tgtatttaaa ctcgcgagct attgtttata
     9481 tagataatgg ttttagcaac aaatacgcac attatttctg gggagatttg ccaagcaatc
     9541 tttattcttt tttaatttta tcaa
//
LOCUS       DAQSLY010000062         9548 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.062, whole genome shotgun sequence.
ACCESSION   DAQSLY010000062 DAQSLY010000000
VERSION     DAQSLY010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.062"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1362
                     /locus_tag="R2H98_001148"
     CDS             <1..1362
                     /locus_tag="R2H98_001148"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEE9024024.1"
                     /translation="EKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFDLLRRVLLAQ
                     GNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVLDPDFKPRAT
                     HYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENISRLSNEVQKR
                     NESDFVLWKFDENFYENEFGKGRPGWHTECVAMIDSIFENTLDIHAGGIDLLFPHHEN
                     EAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMGEALRFYLLS
                     SHYRSHFNYSLLDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKSEIAKQILEI
                     LNDDLNVSKALALLDDFINNANLELDKESKNKILKQNIKEALSELAKIFGFGFMDTTL
                     YFQWGVSKEEREEIEKLILERTEAKKSKDFNTADTIREQLSSKKITLLDTPNGTIWEK
                     INA"
     gene            1355..3097
                     /locus_tag="R2H98_001149"
     CDS             1355..3097
                     /locus_tag="R2H98_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9024025.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFSKHNDILCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKTIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            3129..4187
                     /locus_tag="R2H98_001150"
     CDS             3129..4187
                     /locus_tag="R2H98_001150"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEE9024026.1"
                     /translation="MAYEMIKPLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGLLHISEAVGVNLK"
     gene            4184..5434
                     /locus_tag="R2H98_001151"
     CDS             4184..5434
                     /locus_tag="R2H98_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEE9024027.1"
                     /translation="MIAYEKIQLKNKLEIYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGAKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            5427..6323
                     /locus_tag="R2H98_001152"
     CDS             5427..6323
                     /locus_tag="R2H98_001152"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEE9024028.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            6323..7102
                     /locus_tag="R2H98_001153"
     CDS             6323..7102
                     /locus_tag="R2H98_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEE9024029.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(7143..7448)
                     /locus_tag="R2H98_001154"
     CDS             complement(7143..7448)
                     /locus_tag="R2H98_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024030.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(7460..8056)
                     /locus_tag="R2H98_001155"
     CDS             complement(7460..8056)
                     /locus_tag="R2H98_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEE9024031.1"
                     /translation="MQIIKQACGAYETNCYILFGEHGEIIIDPGFDALNFIKKHVKNP
                     LAILNTHGHYDHVWDNEKVKQAYQIPIYIHKNDTFMLEDPFNQGFMPSKADYLIDDEN
                     IISIGGLDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            8130..8870
                     /locus_tag="R2H98_001156"
     CDS             8130..8870
                     /locus_tag="R2H98_001156"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEE9024032.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDKGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            8874..>9548
                     /locus_tag="R2H98_001157"
     CDS             8874..>9548
                     /locus_tag="R2H98_001157"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEE9024033.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFDFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LATAIAK"
BASE COUNT         3415 a         1139 c         1773 g         3221 t
ORIGIN      
        1 gagaaaataa aacttgataa aaaagatatt agtatttatt tatgcgggcc tacggtttat
       61 gatgatgcac atttaggaca tgcaagaagt agtgtttgtt ttgatctttt gcgtagggtt
      121 ttacttgctc agggcaatag ggtaaaattt gctagaaatt acacagatat tgatgataaa
      181 attttaaaaa aaatggctca aagtggtcaa actttagagg aaattacgga attttatatc
      241 aaaagttatg aagaggatat gagggtttta aatgtattag atcctgattt taaacctcgt
      301 gcaacgcatt atataacagc tatgcttgat ttgattaaaa agcttgctaa ggatgggttt
      361 gtttatactc tagaagatgg aatttatttt gatacaagta aagatgaaaa atatttaagc
      421 ctatcaaatc gcaatttaga agaaaatatc tctcgtctaa gtaatgaagt gcaaaaaaga
      481 aatgaaagcg attttgtgct ttggaaattt gatgaaaatt tttacgaaaa tgaatttggc
      541 aaagggcgcc caggttggca tactgaatgt gttgctatga ttgattctat ttttgaaaat
      601 actcttgata tacatgctgg agggatagat ttgctttttc ctcatcatga aaatgaagct
      661 gcgcaatgtc gttgtggatg taagagaaaa ttagcaaata tttggcttca taatggtttt
      721 gtaaaaatcg atggcgaaaa aatgagtaaa agtttaaata atagtttttt cataaaagat
      781 gctttaaaag aatttatggg cgaagcttta agattttatc ttttgagttc tcattataga
      841 tctcatttta attattcttt attggattta gaaaatgcta aaaaacgttt agataaattt
      901 tatcgcctta aaaaaagatt ggatttaggt gaaatttctg attttgatgt tttaaatgat
      961 attgaaataa aaagcgaaat tgctaagcaa attttagaga ttttaaatga tgatttaaac
     1021 gtttctaaag ccttagctct tttagatgat tttataaata atgcaaattt agagttggat
     1081 aaagaaagca aaaataaaat tttaaaacaa aatatcaaag aagctttaag tgagctagct
     1141 aaaatttttg gctttggttt tatggataca actttatatt ttcaatgggg tgtaagcaaa
     1201 gaagaacgag aagagattga aaagttaatt ttagaaagaa ctgaggctaa gaaaagcaaa
     1261 gattttaaca cagctgatac aataagggaa caactaagta gtaaaaaaat cactctttta
     1321 gatactccaa atggaacaat ttgggagaaa ataaatgcat aatgagatga atttaaaaga
     1381 ggttttaata cgctttaagc ccttttataa aagatattgg aagcaatttg ctatagctat
     1441 ttttggtatg attttagcaa gcggaggaac tgctggaagt ttttatgctt tagagcctat
     1501 tttaaattat attttcgttg aaaaaaatga agctttactt tatacagtgc cttttttgct
     1561 agtattgatg tattttttta aaaatcttgg aacttatcta caaagttttt atgtttcctt
     1621 tataggaaca gatatgttaa gagtattgcg tgctagggtt ttaaaaaatg ttttacgctt
     1681 ggatatggat ttttttaaac gctatagaag cggagagctt gtaagtcgtt gtactaatga
     1741 tattaatgca cttcaaagta tagtatcaaa tattattcct gattttttta gagagctttt
     1801 aactgctata ggactgcttg cggtagtctt gtatcaaagt cctactttgg ctttttttgc
     1861 tttagtgatt ttgcctttag ctatttttcc tttggtatgg tttgctaaaa aacttaaaaa
     1921 atatgcaaga aatatacaag aaacaaattc ggatttactt tcttatttgg gtgaaatttt
     1981 ttcaaatatt gaattgatca aagctaatga taatgaaaaa aaagaaagtg ataaattttc
     2041 taagcataat gatattttat gtaaattaaa cctaaaatcc gcacgtattg atgcacttac
     2101 aagtccttta atggatatga tgggttctgt tggggttgct gtggtgatta ttgtaggggg
     2161 tagagaggtt atcaatggtt ctatgagtgt gggaagtttt atcagttttg tttcggcact
     2221 ttttgcgata tatactcctt taaagcgtct ttcgtcttta tatggaaaac ttcaaggtgc
     2281 tgttgcggca agtgaaagaa ctttttattt attggattta gaacctcaaa ttaaaggtgg
     2341 aagcaaagaa ttaaaaaaca ttgaaaaaat tagctttgaa aatgttgaat ttgcttatga
     2401 aaacccgcat aaaagtgttt taaaaggcgt aaattttgat tttgttaaag ggcaaatgct
     2461 tgctcttgta gggacaagtg ggggaggcaa atcttctatt attaatcttt tgatgtattt
     2521 ttatgaaaag caaaaaggta aaattttact caatcaagaa gatattagca cttttaccat
     2581 agaaagctta catgctaaaa taggacttgt aacgcaaaat atttatcttt ttaatgatag
     2641 ttttgctgca aatattgctt atagcgaaga gttagaagaa gaaaaagtca tccaagcttt
     2701 aaaattggcc aatgcctatg aatttgttaa agaaatgggc gggatttggg ctgaagtgaa
     2761 agaacatggt aaaaacttaa gtggaggaca aaaacaaaga atagcaatcg ctagagcttt
     2821 atataaaaat cctgatgtgc ttatttttga tgaagcaact tcagctttgg ataatgaaag
     2881 tgaaaaaaca atagttaaaa ctatagaaaa tttaaaacaa gacagattga ttttagtggt
     2941 tgcacatcgt ttaagcacta tagaaaatgc agataaaata gtagtattgg ataagggcaa
     3001 ggtattggca ataggtaaag atgaagagct tttgcaaact tgttctttgt atcaaaaatt
     3061 taaaagcaaa gaaaaaacaa agcctagctt tagttaattt tagttagaat ttcaaaaagg
     3121 attaaaaaat ggcttatgaa atgataaaac ctttactttt taagttaaac cctgagcatg
     3181 cacatgcttt ggttgaatat agcttaaggg ctttaagtgc tagttttcca ggagctttaa
     3241 gttttttagc acacaaatat atagttgatg atgaaagttt aaggcaaaat ttacttggac
     3301 ttgattttaa taatcctgta ggtttagcag gaggctttga taaaaatgcc actatgataa
     3361 gacctttgag tgctttagga tttggctttt tggaagtggg aacttttact ccaaaacctc
     3421 aagaaggcaa tgaaaagcca cgtctattta gacttgtaaa acaagaaagt atacaaaatg
     3481 ctatgggttt taacaacgaa ggtgctgaaa agattgcttt aagactcgca aaaacttatc
     3541 cttttgtttt gcctttaggg gtaaatatag ggaaaaataa aatcactcca aatgacaaag
     3601 ccttggagga ttattttact ttgtttagag attttaagga tttgtgtgat tattttatcg
     3661 ttaatatctc atctcctaat actaaaaatt taagagagtt gcaaaatgat gattttttaa
     3721 ataccttgct tgaagaagcc aaaaaaatca cttctaagcc tattttgata aaaattgctc
     3781 ctgatatgaa aatagatgat gctttaaatt tatgtgaaaa tgccattaaa aaaggtgcag
     3841 atgggtttat attagccaat actagtgttg attatagctt gctagataat aatcgtactt
     3901 ttggtggtat tagcggaagg ctgattacgg aaaaaagtgg tatttttttc aaagaagtag
     3961 ctaaaattct ttttggcaaa accttgctta ttgcaagtgg agggattgat agtgctgata
     4021 ttgcttatga gcgtattaaa aatggggcta atttggtgca agtttataca gctttgattt
     4081 ttaaaggtcc ttctttggta aaaaatatca atcaaaatct tatagagctt ttgagaaaag
     4141 atggtttatt acacattagc gaagctgttg gggtaaattt aaaatgattg cttatgaaaa
     4201 aattcaatta aaaaacaagc ttgaaattta tgctttgcct gtaaataaaa atagcgatgt
     4261 gattagcgtt gatatttttt ataaggtggg ttcaagaaat gagatcatgg gaaaaagtgg
     4321 catagctcat atgttagaac atttaaattt taaaagtact aaaaatttaa aagctggcga
     4381 atttgatgag attgttaagg gttttggtgg tgtggataat gcaagcacag gttttgacta
     4441 tactcattat tatattaaat gtgcgaagaa aaatttagat aaagctttag agctttttgc
     4501 ggaacttatg gcgaatttaa atttaaaaga tgaagaattt cagcctgaaa gagcagtggt
     4561 tttagaagag cgtagatgga gaacagataa taatcctttg ggatatcttt attttagact
     4621 tttcaatcac gcatttatgt atcatcctta tcattggact cctataggtt tttttaagga
     4681 tatagaaaat tggagcattg aagatattaa agaatttcac agtatttact atcaacctaa
     4741 aaatgcgatt ttacttgtaa gtggcgatat agaaagtaaa gaagtttttg agctttcaaa
     4801 aaaacatttt gaaaagatta aaaatactaa gactatacct aaaattcaca caaaagagcc
     4861 taagcaagat ggagcaaaaa gaatatattt gcataaaaac tcagatactg aactattagc
     4921 ccttgcttat aaaattccaa atttcaagca caaagatata cctgctttaa atgctttatc
     4981 cgagctttta ggaagtggaa aaagttcttt aatgagtgaa attttgattg ataaattaaa
     5041 tttaatcaat gattattatg cttatgttaa tgattgtata gatgaaaatt tatttatttt
     5101 tatttgtaat tgtaacccca atgttaatgc agaaaaagta gaaaaagagc ttttaaaaat
     5161 cattgataaa cttaaaatgg gtaaaatttc tcaaaaagat ttgcaaagag tgaaaaataa
     5221 tgtcaaaagt gattttattt tctcacttaa caatgctagt gcagtggcaa atatttatgg
     5281 ttcatatcta gcaagaggag atatcaatcc tttgttaaat tatgagaaag atatacaaaa
     5341 tttggaatta aaagatttga tttcttgtgc taaaaaatat tttattcaag aaaattcaac
     5401 tacggtaatt ctaagaaagg attcaaatgg ataaaaatat tatcattggg gcgatgacgg
     5461 ctcttattac accatttaaa aatggaaaag ttgatgagca aagttatgca agattgatta
     5521 aaagacaaat agaaaatggc atcgatgcag tagttccagt aggaacaaca ggagaaagtg
     5581 caactttaac ccatgaagaa catagaactt gcatagaaat agccgttgag acttgtaaag
     5641 gaactaaagt taaggtttta gcaggtgcgg gaagtaatgc aactcatgag gcagtgggtt
     5701 tggctaaatt tgctaaagag catggtgctg atgggatttt aagtgtggca ccgtattata
     5761 ataaacctac gcaacaagga ctttacgagc attataaggc tattgcgcaa agtgtagata
     5821 ttcctgtgct tttatataat gttccaggaa gaacaggttg tgaaatttca acggatacta
     5881 ttatcaagct ttttagagat tgtgaaaata tttatggagt aaaagaagcg agtggaaata
     5941 tcgataagtg tgtggatttg cttgcacacg aacctagaat gatgcttatt tcaggggaag
     6001 atgcgatcaa ttatcctata ctttcaaatg gtggaaaggg agtgatttca gtaacttcaa
     6061 atttattacc cgatatgatt agcgctttaa ctcattttgc tttagatgaa aattataaag
     6121 aagctaaaaa aatcaatgat gagctttata atatcaataa aattttattt tgcgaaagta
     6181 atcctattcc tattaaaacg gctatgtatt tagctggatt gatagaaagt ttggaattta
     6241 gacttcctct ttgttctcca agtaaggaaa attttgctaa aattgaagaa gtgatgaaaa
     6301 aatataagat caaaggattt taatgaatac agaatttcaa ggaaaaactt tagtgattag
     6361 cggtggaact cgcgggatag gcaaagctat agtttatgaa tttgctaaag tgggtgcaaa
     6421 tatagctttt acttataatt ctaatgcgca aattgctgat gaaatggttc aagatttgga
     6481 gaaaaattat aaaatcaaag ctagagctta tgagtttaat atcttagaac ctgaaaccta
     6541 taaagaactt tttgaaaaaa ttgatgtgga ttttgataga gtggattatt ttatctcaaa
     6601 tgctatcatt tcaggacgtg cggttgtagg tggctatact aaatttatga agttaaaacc
     6661 aaagggaatt aataacattt ttacagccac agtaaatgct tttgttgtgg gcgcacaaga
     6721 agcagctaaa aggatggaaa aagtaggggg tggaagcatt atttctatct catctacagg
     6781 aaatttagtg tatatagaaa attattcagg tcatggtaca gcaaaagccg ctgtagaagc
     6841 tatggcaaga tatgcggcta ctgaacttgg agaaaaaaat atccgtgtaa atgtcgtaag
     6901 tggtgggcct attgaaactg atgctttaag agcttttaca aattatgaag aagtaaaaca
     6961 ggctactata aatttaagcc ctttaaatcg catggggcag cctgaagatt tggctggagc
     7021 atgtcttttt ctttgttcaa gtaaggcaag ttgggtgaca ggacatactt tcatcgttga
     7081 tggtggtaca acttttaaat aaaaattaag aaaaatcaat ggatttttct taaaaatatt
     7141 tttcaatcaa gttttaattt ccaccctaaa aaaacactta ataatgcaag taaaaaaata
     7201 aaatttaaag tccaattacc aaaacctata aaacctatag ataatacgct gtaaaaaaat
     7261 cctcctacag ctgaataaat acaaatcgta cttaaagatc cattttctgc cattttttta
     7321 catgggcaga ttttataaaa ttttttatca ttaaattgat ttttcttttt atttcccaaa
     7381 aataaaccaa aaagggcaaa aagatttaaa aaaataaaag catataataa aatttgatct
     7441 aattccattt taatatacct taaaaatatc taagccaaga gggtagatgg acttgctctt
     7501 cttttaaagt agtttcttgt ccatgtcctg gcaaaagttt aaaatcttct ttgtaagtca
     7561 taactttttc taagctttgt ttcattaaat ttgcatctga ataaggaaaa tcccatcttc
     7621 ctatgcttct ataaaataaa aaatctccac taaacatgat atttttacct acaatttcta
     7681 tcatagtgca acctggtgta tgtcctggta aaaagtgaaa tttaaagtca agtccgccta
     7741 tagaaatgat attttcatca tcaatcaaat aatccgcttt gctaggcata aaaccttgat
     7801 taaaaggatc ttcaagcata aaagtatcat ttttatgaat ataaatgggg atttgatagg
     7861 cttgttttac tttttcatta tcccaaacat gatcgtaatg tccgtgagtg tttaaaatcg
     7921 ctaaaggatt ttttacatgt tttttgatga aatttagcgc atcaaaacca ggatcaatta
     7981 taatttctcc atgctcacca aataaaatat aacaatttgt ctcataagct ccacaagctt
     8041 gtttgataat ttgcattttt tgcctcttta ataaaaaatt tgccttaaat aaatataatt
     8101 atacattaaa tttttaaaag gcaagcttta tggattggca aaagattacg gaaaaaatgt
     8161 gtgattttat acaagaaaaa gtgaaaaatt ctcaaagtca aggtgtggtt ttggggctta
     8221 gtggcgggat tgattctgct ttggtagcaa cgctttgtaa aagagcttta aaagagaatg
     8281 tttttgctct tttaatgcca actcaaattt caaacaaagc caatcttgaa gatgctttaa
     8341 ggctttgtgc ggatttaaat cttgaatata aaatcataga aattcaaagc attttagatg
     8401 cttttataaa gcaaagtgaa aataccactc tagtatcttt gggaaatttt gcagcgcgta
     8461 ttagaatgag tttgctctat gattattctg ctttgaaaaa ttctttagtc ataggcactt
     8521 ctaataaaag cgaattgctt ttaggttatg gtacgattta tggggattta gcttgtgctt
     8581 ttaatcctat aggatcgctt tataaaagtg aaatttatgc cttagcaaaa taccttaact
     8641 tgcatgaaaa tttcatcaaa aaagctccaa gtgcggatct ttgggaaaat caaagtgatg
     8701 aggcggattt aggtttttct tatgcaaaaa tcgataaagg tttaaaagct ttagaaacta
     8761 atgatgaaaa acttttaaga acgcttgatc cttctttgat tgctatgtta aaaaatcgca
     8821 tgcaaaaaaa tgcttttaag ggaaaaatgc ctgaaatttt ggaaatttaa acaatgaatg
     8881 aagaaaaaaa ttatgaactt tggcttgata attatttttt taagcccaat ttttggcaaa
     8941 aatgccttgc ttttatactt ttacctttaa gtgtgcttta tgcttttttt gcgattttaa
     9001 atactttttt tcgtaaaaaa atagttttta aaaagcctgt tattagcgtt ggtaatttaa
     9061 gttttggagg taatggaaaa accccgcttt gtaaagctat agcaagggaa tttgatggcg
     9121 tttttatagt acttaggggc tataaaagaa agtctaaagg tttgtttgtt gttaaaaatc
     9181 aaaatgaaat tttatgcacc ttagcacaaa gtggcgatga agctatggag tatgcttttg
     9241 aagaaaatat caaaggtgtg attgtgagtg aagatagagt aaaaggtatt gaaaaagcct
     9301 ttgaattggg agctaaaatc gttgtactcg atgatgcttt ttctaaattt catattaaaa
     9361 aatttgatat tttgcttgaa agcaaaatca aaccttattt tgattttact ttaccaagtg
     9421 gagcttatcg tttgccaaaa ttttatgaaa aaagggctga ttttattgca ttagaaggca
     9481 gggattttgt gcgttattct tttgtaaaag aaaatccaaa ggctgttttg gcaactgcta
     9541 ttgctaaa
//
LOCUS       DAQSLY010000063         9030 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.063, whole genome shotgun sequence.
ACCESSION   DAQSLY010000063 DAQSLY010000000
VERSION     DAQSLY010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.063"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(1..255)
                     /locus_tag="R2H98_001158"
                     /pseudo
     CDS             complement(1..255)
                     /locus_tag="R2H98_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            411..1388
                     /locus_tag="R2H98_001159"
     CDS             411..1388
                     /locus_tag="R2H98_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEE9024034.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1389..2375
                     /locus_tag="R2H98_001160"
     CDS             1389..2375
                     /locus_tag="R2H98_001160"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEE9024035.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTTAKDMEVATYDLGYADGLFRYNGKGELVLGNGKT
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2378..2845
                     /locus_tag="R2H98_001161"
     CDS             2378..2845
                     /locus_tag="R2H98_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEE9024036.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2949..4415
                     /locus_tag="R2H98_001162"
     CDS             2949..4415
                     /locus_tag="R2H98_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEE9024037.1"
                     /translation="MKLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIILTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNMQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4443..5171)
                     /locus_tag="R2H98_001163"
     CDS             complement(4443..5171)
                     /locus_tag="R2H98_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEE9024038.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(5164..5907)
                     /locus_tag="R2H98_001164"
     CDS             complement(5164..5907)
                     /locus_tag="R2H98_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024039.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVVSYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILHFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5990..6169
                     /locus_tag="R2H98_001165"
     CDS             5990..6169
                     /locus_tag="R2H98_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024040.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            6162..6731
                     /locus_tag="R2H98_001166"
     CDS             6162..6731
                     /locus_tag="R2H98_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEE9024041.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLIKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6761..7126)
                     /locus_tag="R2H98_001167"
     CDS             complement(6761..7126)
                     /locus_tag="R2H98_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEE9024042.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            7249..8241
                     /gene="pheS"
                     /locus_tag="R2H98_001168"
     CDS             7249..8241
                     /gene="pheS"
                     /locus_tag="R2H98_001168"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEE9024043.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            8238..>9030
                     /locus_tag="R2H98_001169"
     CDS             8238..>9030
                     /locus_tag="R2H98_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEE9024044.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIELKEEIQTNLLLSLRLAQIESLGKNSIENLLNYATHSTG"
BASE COUNT         3117 a         1105 c         1579 g         3229 t
ORIGIN      
        1 tctttaaatt agaataatga ggaaaattct taatttttat agtagtttta ttgaaaattt
       61 ttataggttt tgggtaggct gaaacttcaa tatttttttt attaaaagaa aaaacacaat
      121 cttgtaaatt taagtcacaa gttagaggtt ggcatgtatt taagctaaat atactttctt
      181 tttatcatat aatgtataaa aagctaaaaa caaaatgcct aaaaaagaca ttcctataaa
      241 aaaatttctt atcattatag acaacctttt aaaacaagcc tttatgattt gtaaaaatta
      301 tatcataaat aaggctgcat tgttaatata attaatattt tttaagaaaa aaaatattat
      361 aatcacaaac atttttgact taaaaaattt gaaataccta aggaaaaaca ttgttaaaac
      421 gacttgcttt attaattgca ctttcttcat tgatgttgca tgcctcagat cttgttaaaa
      481 tttatcttaa tcaaggatta gatgctgttg gtgtagcgat tgaaaaagaa ttaactcaaa
      541 aggatttttg gttaagtgaa ataggagata aaaatatttc acttggatac tatgatgata
      601 atgttgctat cgtgcttaca aataaaacag ataaaattct ccgtgtttat tcttacgagg
      661 acggaaaaat aagaaaagat tttgaacaaa aagaaataat aactggatta atgggtgata
      721 aaaaaataga aggagatttg aaaacgccag taggttttta tgagttaggc cgtaagttta
      781 atccaggtga tccttattat ggtccctttg cttttgccac aacttatcca aatttacttg
      841 ataaagtaca aggaaaaaca ggtggtggta tttggatcca tggctatcct ttagatggtt
      901 ctagacttga tgaatttaaa acaagagggt gtattgcttt atttaataat aatttggaga
      961 aatttgcaaa agttgtgcaa gataaaaaag tttttgttat gacagaagaa aaagaaaaaa
     1021 ttagagctaa aaaggatcaa atcgctagtt tattggctga tctttttaca tggaaactag
     1081 cttggacaaa tagtgacact aatgcctatt taagttttta tgatgagcaa gaatttaaac
     1141 gttttgataa aatgaaattt gaacagtttg cttccatgaa aaaatctatt ttttctcgta
     1201 aagaagataa aaagattaaa ttttcagata ttaatatcag cccttatccg aatttagaaa
     1261 atgaaactat gtatagaatt tcattttatg aggattatta cactaaaaac tatcagttta
     1321 gaggcgataa aattttatac gttaagatag atagtaaagg taaaatgaaa attttagcag
     1381 agcaataaat gtctttaata aaaattgatc aaaaagctta tgaatacaat ttaagacata
     1441 ttgctaaaaa aatagggagt tttcaaagat taatttgtgt ttttaaagat aatgcatatg
     1501 gacatggagc taagctttta gctccattag ccaaaaattt aggagtttct tttgttgctg
     1561 ttaagagtga agaagaagct cgagaaatcg aagaattttt tgagaatata ttaatactat
     1621 cacatcgtcc tcatggtaat gaaaattctc gatttattta tgctttaaat gacatttctc
     1681 aagtaaaaaa ttacaagcaa gatataaaaa tacatctaaa aatagataca ggcatgcatc
     1741 gcaatggaat ttgtgtagaa aatttagagc atgctataaa tcttattcaa ggtagtgatt
     1801 taaaacttac tggaatgttt acacattttg ctagtgcaga tgaaatggat ggaagttttt
     1861 ttgttcaaaa agaaaatttt caaaaagcta aaaagatagt aaaaaaatat ttttcaaatt
     1921 tattatttca ttcgtataat tctgcagcat tatttagagg gaaaattcct gaagatgaat
     1981 attgtagagt tgggcttgtt caatttggat atggggattc aaatttaaaa agagttttaa
     2041 gtttgtatgc tcatagatta agtcaaagga ttttacaaaa aggacagagc ataggatatg
     2101 gaggcatttt tactactgca aaggatatgg aagtagcaac ttatgatttg ggttatgctg
     2161 atggtctttt ccgttacaat ggaaaagggg agttggtgct tggaaatgga aaaacaatgc
     2221 ttggaaagat gtcaatggat agtttttctt gtgaaaattc tggtgaggaa atttgcgtgt
     2281 ttaaagatgc tgatatttgg gctgattttt ttcatactat taactatgaa attttagtaa
     2341 aattaaatcc taatattcaa agagttctag tataaatatg tttaatatag ttttagttca
     2401 ccctagaata ccgcaaaata caggtagtat aggtagaatg tgctttaatg ctggttttaa
     2461 acttcatatt gttaaaccaa ctgtttttga tatttcacaa aaggctgtta gaagggcagg
     2521 acttgattac tgggataaat tagagcctat tatttgggag aatcttgaag aatttttgaa
     2581 tgaaaatatg atttataaaa atcgcttttt tttcgcaaca actaagagtc aaaaagctta
     2641 ttttgatgca gaatttcaaa aaaatgattt cttattcttt ggaagtgaga gttatggttt
     2701 gcctatggaa ttaatgcaat taaactggga aaatgctata actataccta tgaaatctta
     2761 tggaagaagt ttaaatttag ccacaagcgt tggtataatc tcttatgaag ctttaagaca
     2821 aaattttaga aattttgctt cttaaaagtt tcaaatttac acaatagctt aaaacaaata
     2881 aaatcataaa gtccttttta taaaaattat gttaaagtaa aatttagatt attttttgag
     2941 gagtttggat gaaattagat attatgctag attttgccaa taaagcgtct gatattatag
     3001 ctaataagat tgtcccaaat acagacatta ttatggtagt tttacttatt gtttgtgggc
     3061 tttattatag ttttttaact cgctttgttc agtttcgtat gttgagttct gtatttaaaa
     3121 ttcttacaga aaaaaacgaa ggacacgcta aagaacatat ttcacctttt caagcattaa
     3181 tgatctcaac tgcttctaga gttggtatag gaaatattgc tggaatttct ttggcattgg
     3241 ctacaggtgg agctggtgct ttattttgga tgtgggttat ggcatttttt ggtggtgcct
     3301 cagcatttgc tgaaagtacc ttagctcaag tttacaaatc aaaagatgat acaggcgggt
     3361 ttaaaggtgg tccagcttat tatataaaaa aagccttagg ctcacatttt tttggagctt
     3421 tttttgcttt tattcttatt attacttatg cttatggatt taatggactt caaagtcaaa
     3481 caatgacttc gtcttttaaa gtttattatg atatgtttaa tccaaatgct gctgtagatt
     3541 ttgcatcaag ttcttggcca atgattattg gtattatttt aactattttt ggtgcatgga
     3601 tgtttttttc tcaccatact aaaataggta aaattagttc tttaattgtt ccttttatgg
     3661 ctttagctta tgttttactt gccgtgattg ctgttttaat gaattttgat aaaattcctt
     3721 ctgtgattca tatgatttta caaagtgctt ttgattttaa agcgattttt ggtggttttg
     3781 ctggttctgc tttggttata gggattaaaa gaggactttt ttcaaacgaa gcgggtatgg
     3841 gctcggcacc taatgcagct gcagcagctt tgacaagtca tccagctaaa caaggtgtta
     3901 tacaagcctt ttcagtttta attgatgttg ttgtttgtac aagttctgga tttttagttc
     3961 ttttttctat ggcatattta ggacttggag aaagtaaaat tgatggtgga atgcctttag
     4021 ttcaagaagc tatgcgtgag tattacggta gctttggaat ccattttatt actatagcta
     4081 ttgttctttt tgcaataact tctttaatag gaaattatta ttatgctcaa gctaatgtta
     4141 aatatttaac aaattccaaa tttgtaatga atttgtttag aattacagct gtggctatga
     4201 tttttatagg ctcacaaatg aatttaaaac ttgcttggaa tttggctgat ttgactatgg
     4261 ctttcatggc aacgacaaat attatatctt tattgctttt aggtggtata gtaaataaag
     4321 ttttaaaaga ttttaatatg caacaaaaat ctggtataga tcctaaattt aatgctagca
     4381 aacttggaat taaaaacgct gaatgttggg attaaaattc ataagcctta gtggcttatg
     4441 aattaatgat ttaaaacctt gtttaaaaat tctctcaatc tttcattgct aggattttca
     4501 aatacttctt tagggcttgc atcaacagca atttttcctt tatccataaa aaatatacga
     4561 ttggcaacat ttctagcaaa gcccatttca tgagttacta caagcatagt taaaccttct
     4621 tttgcaacat ctttcataat gcttagaacc tcgcctatca tttcaggatc tagagctgaa
     4681 gtaggttcat caaataaaat aacatcagga ttcatcatca agcttctagc aatagctatg
     4741 cgttgttttt gtccgccaga aagcttatgg ggcattatat tttctttgtc tgctaaaccc
     4801 accttagcaa gaagtaattt tgcttttttt atggcttctt cttgacttaa aattcctgtt
     4861 ttaatgggcg ttaaacataa attttccata acatttttat tggcaaaaag attaaaatgc
     4921 tgaaatacca tgctaacttt ttgcctgatc ttattaatat caatttcttt atcaagtatg
     4981 ttttgcttat tgattaaaat ttccccacta tcagctagtt ctaagcgatt gatgcagcgt
     5041 aaaaatgtac tttttccgcc tccacttgga cctatgatag ctattacatc gccttttgag
     5101 attgtagtgt taatattttt taaaacttct aattctccat attttttttg taaattttta
     5161 acttcaatca tttttattca tcctaagttc aagttttttt gcaaaatagc taaaaatttt
     5221 tacacttaca taataaacaa gtccagtgaa aataataggt tttggattgt aaagtacggc
     5281 ttgcaagctt tgactttgca tggtaatatc aataacacta ataaatccta caacagaagt
     5341 ttccttaaat aaagaaataa attcattagc taatgcaggt agaatgtttt tagtagcctg
     5401 tggaagaata atttctttca ttgaagtttt gtaatcaagt cccattgctc ttgcagcttc
     5461 catttgtccc ttatctacac tattaatgcc acttcttaca atttctgcta tataagccga
     5521 gctattaagt cctagtgcaa gaatggctgc ataaaggtta tctataaaag taaaaattac
     5581 aaaagcaaaa atcatcaatt gtaaaattac tggtgttcct cgtataatgt ctatatattc
     5641 atctataata aaattaagcg ttttaaattt agagaagtgt aaaatagcta aactaaaacc
     5701 aataatcact ccgataataa cagcgcaagc agttaataaa agtgtaataa gatagctttt
     5761 taaataagct tttgcatttt ctgtatagcc atagcttaca actccactag gatcttgaat
     5821 ttttaatatt tctattggga aagaaaaata gccccataaa ataataataa caaaaaaaac
     5881 aaaaattctt atatttttct gattcaattt gtaaaccttt tcagagaaat tatttaaaaa
     5941 aagattttat agaaatatct ttgaattttc tctaaagatt taaaaaaatg tgttagaatt
     6001 tcccaaaaat aaggttgtat ttatggaaat tttagatttc attctaatag ttatttttgt
     6061 gtttttaatg attgttttgg ttataggttt caatcatcaa atgatgcaaa aaaacaaaga
     6121 aagagaagaa agatttaaaa aatataaaaa aggagaacaa aatgagtaaa aaagtattaa
     6181 ttccattggc tcaaggtttt gaagaagctg aatttatagg aattgcggat gttttaaaac
     6241 gagcaaaaga gttaaatcca gatttggaag ttgttatagc ttcgttaaac agtgagttat
     6301 tgataaaagg tgctaatagc attagtataa aagcagattg ttctatagag gatgttgata
     6361 tagaaaattt agatgctatt gctttggcgg gtggctttga aggtatgatg aatcttaaga
     6421 attcaaatgt tattttaaat atcattaaac aacttcatag caaaaataaa attgttgccg
     6481 caatctgtgc ttctcctata gttttaaatg aagcaggtgt tttagagggc gagtttgctt
     6541 gttatcctag ttgtgaagtt ggacttaatg gaaatcgtgt taacaaggct gtagttgtaa
     6601 ataaaaatgt tataacttca gcaggtccag ctacggcaat tctttttggt ttagaactag
     6661 ctaaaaagtt atgcggtgat gaaatttatc aaaaattata tgagggaatg ttgctacctt
     6721 tgacaaaata gtttaaatgg tagtttttct accatttaaa ctaaaataaa gcttgaggat
     6781 tttctttttt tgttttttcc ttaggcagtt caaaacctcc aagcatatga aaatgcaaat
     6841 gaaaaacttc ttgtccacta ttttttccac agtttgttac caagcgatat ccacttttat
     6901 ctacacctaa aagaacagct aattcttgta tgaaacttgt cattttggcc ataagttcag
     6961 gatcaaattc ttgaaagtct ttaaaatatt ttttagggat tataagtata tgtatgggtg
     7021 ctttgggtgc aatatcatga aatgctagaa aatcgtcact ttcaagcact ttattgcatg
     7081 gaagtttacc ttcaactatg agttcaaaaa ttgttttttc ttgcattatt tatccttttt
     7141 tattgttggt ttgatacaat tatatcttta aagtttggtt tttatgctga atttaaaata
     7201 gtttttaata gaattagaat ttgaaatatt ttatttaagg taagaaaatt gcaaaatttt
     7261 atagaacaga ttcaaaaatg tgagaattta aatgatttgg aagccattag gatttccgtt
     7321 cttggaaaaa aaggtatttt aacagaaggc tttacaaagc ttaaagagtt agaagatgag
     7381 gcgaaaaaag aatttgctgc taaattaaat gcacaaaaag aaatatttaa tgaggcttat
     7441 ttagccaaat ttaaagattt ggaaaatctt gctttagaag aaagaatgaa acaagatgct
     7501 ttaaatttta actattttga tgaaagtatt acaacaggtg ccttgcatcc tgttatgagc
     7561 accatggata aaatcataga atattttata gctttgaatt ttagcataga aaaagggcct
     7621 ttaatagaag atgactttca taattttgaa gcgttaaatt tacctaaatc tcaccccgca
     7681 agagatatgc aagatacctt ttattttgat gataaaaggc ttttaagaac acaaacttcg
     7741 ccagtgcaaa tacggacaat gcttgcacaa aaacctccta ttaggatgat agcccctggt
     7801 gctgtattta gaagagattt tgatattacg catactccta tgtttcatca agttgaaggc
     7861 cttgtggtgg aagaagggca aaaggttagc tttgcaaatt taaaaagtgt attggaagat
     7921 tttttgcgtt atatgtttgg agatgtgaaa gttcgttttc gtccaagttt tttcccattt
     7981 acagaacctt ctgctgaagt tgatatttct tgtgtatttt gcaaaggaaa gggttgtaga
     8041 gtttgcaaac atacaggttg gcttgaagtt ttaggatgtg gaatagttga tcctaatgtt
     8101 tataattttg ttggttatga aaatgtaagt ggttatgctt ttggattggg agtagaacgt
     8161 tttgcaatgc ttttgcatca aattccagat ttaagatctt tatttgaagg tgatttgaga
     8221 ttattggagc agtttagatg ataattacta aaagttggtt gaatgattgg ttagaacttg
     8281 aagaaataag ttcagataaa atagctaaaa ctttaaactc tataggtata gaagttgata
     8341 gggttggcgc tttaaaggct ccagataaag ttgttgtagg ctatgttaag gaaaaaatta
     8401 aacatgaaaa ttcagataaa ttaagcattt gtcaagttga tatcggaagt gaaaccttgc
     8461 aaattgtctg tggtgctgcg aatgttgatg caggacaatt tgtagctgtt gcaactaaag
     8521 gtgctatcat gccaaacggt atggaaataa aagaagcaaa attgcgagga gtggattctt
     8581 gtggtatgct ttgttctagt ttagaactgg gttttgaaaa aatcaatgaa ggaattatgc
     8641 ttttagatga gagtataggg aaattagaac ttgggagacc tttaaatact tatgaaattt
     8701 ttaatgatga gctaatagaa gtggaactta ctcctaatag gggtgattgt ttaagtattt
     8761 atggtatagc tcgtgattta gccgcagctt taaatttaaa tttaaaagaa ccaaaaccat
     8821 ttaaagaaag tgaaaatgtt ttaggtatcg gtagaatttt gcgcttagca gctgagaaag
     8881 aacttaatgg actttataat tatcgagcca tagagctaaa agaagaaatt caaacaaatt
     8941 tattgcttag tttaagactt gctcaaattg aaagtttggg aaaaaattcc atagaaaatt
     9001 tattaaatta tgcaacgcat tcaactggtg
//
LOCUS       DAQSLY010000064         8889 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.064, whole genome shotgun sequence.
ACCESSION   DAQSLY010000064 DAQSLY010000000
VERSION     DAQSLY010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8889
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.064"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..789)
                     /locus_tag="R2H98_001170"
     CDS             complement(<1..789)
                     /locus_tag="R2H98_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEE9024045.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKS"
     gene            complement(786..2228)
                     /locus_tag="R2H98_001171"
     CDS             complement(786..2228)
                     /locus_tag="R2H98_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEE9024046.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(2323..3387)
                     /gene="fbaA"
                     /locus_tag="R2H98_001172"
     CDS             complement(2323..3387)
                     /gene="fbaA"
                     /locus_tag="R2H98_001172"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEE9024047.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(3387..4208)
                     /gene="peb4"
                     /locus_tag="R2H98_001173"
     CDS             complement(3387..4208)
                     /gene="peb4"
                     /locus_tag="R2H98_001173"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEE9024048.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            4289..4915
                     /gene="nth"
                     /locus_tag="R2H98_001174"
     CDS             4289..4915
                     /gene="nth"
                     /locus_tag="R2H98_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEE9024049.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            4912..5562
                     /locus_tag="R2H98_001175"
     CDS             4912..5562
                     /locus_tag="R2H98_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEE9024050.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKSRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            5573..6205
                     /locus_tag="R2H98_001176"
     CDS             5573..6205
                     /locus_tag="R2H98_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEE9024051.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNRGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            6263..6697
                     /locus_tag="R2H98_001177"
     CDS             6263..6697
                     /locus_tag="R2H98_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEE9024052.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKKS
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            6694..6915
                     /locus_tag="R2H98_001178"
     CDS             6694..6915
                     /locus_tag="R2H98_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEE9024053.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(6905..7615)
                     /gene="cmoA"
                     /locus_tag="R2H98_001179"
     CDS             complement(6905..7615)
                     /gene="cmoA"
                     /locus_tag="R2H98_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEE9024054.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(7602..8456)
                     /locus_tag="R2H98_001180"
     CDS             complement(7602..8456)
                     /locus_tag="R2H98_001180"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEE9024055.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKYLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGKDFLSFLKKEFTSLKFIVVGYDF
                     SFGKNRAYSAKDIEFLSGIKTIIVDEFSIGGIGVHASLIKDFLSRANLQKAKEFLGRN
                     YSIKGKVIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQITKDIEQARE
                     LLRKNDER"
     gene            complement(8422..>8889)
                     /locus_tag="R2H98_001181"
     CDS             complement(8422..>8889)
                     /locus_tag="R2H98_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEE9024056.1"
                     /translation="DIGSSTGGFVQILLENQALKITALDVGSNQLHPSLRANEKIILH
                     ENTDLRAFKSEEKFELVTCDVSFISLINLLYYVDNLALKEIILLFKPQFEVGKNIKRD
                     KKGVLKDDKAILKARMDFEKECAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
BASE COUNT         3030 a         1577 c         1088 g         3194 t
ORIGIN      
        1 actcttataa aaagtataga taaaattcat cacctcataa gctctttttt gcgacaaatc
       61 taaattataa atataagatc catcactatc agtatgtcct tcaataatga tattttcaat
      121 gttagaaaaa atttttggat cttcaagaat agcatcaaaa tattcgctta agatttttct
      181 caaacttgcc tttgcctcat tttttaacac ataagaatct ttatcaaaaa gtacttcagc
      241 aggcaaagaa atagatcctg tcttttcatc tatagtgata ttattatcaa gcttactttg
      301 taattccttg cttaaatttt cacgaatcaa accaagattt tgcacctttt ctttagcttt
      361 ttgaaaatct tcttgtaaat ttttaagctc ttcatctttt ttctctagtt gacctagtaa
      421 aatcaaaatt tgcttatctt tattatctaa agttgagttt aaatctttac ttaactgctt
      481 gtaatttgta atattagcct ctaattctgc tttttgagaa ttagcaagat ttaaagcact
      541 agaagcattg tttaaatcag aacttagttt aaacactatg gcttctttat ttctaagctc
      601 ttctttactc tcctctaagc gtgcctcttg tttattgaga ttatctttga tttcttttaa
      661 atcactttga gttaaaacat attttacaac aatagcacct attagcaaaa taaaaacaaa
      721 cagcaatcct gccattaaat cagcataagc tatccaaaaa ttgctatctt cttttgactc
      781 atttttcatt tattttcttt atcttcattt tttagctcat cattgctttc ttgcttagat
      841 atttctgctt gaatttcatc ttgattttct tcagtcttag actctgaaaa atcttctatt
      901 tgtttggttt cattttcttt attctgattt tcatccccag aaagcttgct catcatttga
      961 cttgtttctt catcaagtgc tttcatttct tttttaagct catccatcat tttgatttta
     1021 gcatcaatac ttttttcttc ttcatatact tctttaaatt tatgcatacc ttcaaacaag
     1081 cttgctttaa atccctcaaa aaccttttct tgactttcca acattgcttt ttcataaagt
     1141 tcaaaatttt taccaaaacg ctctattttt tcatcgaatg cacttagtgt cttatcaaga
     1201 tgatgaattt tatcactact gatatcaagc aagcgattat attgttctga cattcttgta
     1261 ttgatttctt ttaaattttg attgagcaaa cctataccat ttaacatttc actataaagc
     1321 tttccaagat cgcgttgatc tctttgtgct ttactaagct cacccatggt ttgtttgata
     1381 tgttcactac ttaatctaat agccttttct tctacattta gcatatcttg gaaaatacca
     1441 aattttctat caatagcatg atcaagctct gcaaaaaaat catcattact aacttgttta
     1501 aaaattgctc caattttttc aaaatgttgc aaactttcag ttaaatatct ttgatcaagc
     1561 tcttcttttg tccaaaaaaa tccacttgta gcgttttttt gacgatttag caaacgatct
     1621 attttgcttt taccatattt ttcaaaaaac atccaccata atgcaagaaa aattccataa
     1681 attgaaacat aaaaagcagt tcccactcca cttaacaaat ctgcaatttc ttgttctaaa
     1741 gcggctgtat cactagaact aaaatttggc attgaaaaag ctatactgat aaaagttcct
     1801 aaaattccca tcattggaaa aattgccgaa cctatactag caaaattctc atttcttgca
     1861 cccttaatat atgtataagc aaagtcatca aaattggcat ttgatttcgt gtctttccct
     1921 atggcaagaa aatgcctcat aatatgtctt tttaaagcct gtttaaattc atctttttgt
     1981 tgttcaaaaa tactatacgc atactcagca ctatgtctag caaaaatcaa tgctgtaaaa
     2041 aaaatcacac ctgtcataat aaccgtatgt aattcgacct taaagtcaat tacattaaaa
     2101 taacccaata aaatcaaaat ataaagaaaa gctggaataa aaataatttt aaaataaacc
     2161 aaagaacctc ttgcatcttt gccttcaggc aaaacaagtt ctgaaatttc atctgattta
     2221 atatccatga aaccaatacc tcattaaaaa ttttatttta aagattgcta cttaatttga
     2281 taaaaatttt taaaacaaaa taaaactaag cttttaaaat gcttagtttt tgtttataca
     2341 gtttaaatct tcaaaagcga tttcaagacg ttttatcatg ctttcttcac cgcttcttaa
     2401 ccaaacacgc ggatcatagt attttttatt tggcttgtca tcaccttctg gatttccaat
     2461 ttgtccttgc aaataagccc tatttttaag ttcatattca cgcaccccat cccaaaaagc
     2521 ccattgagta tctgtgtcaa tattcatctt aattacgcca tagcttactg catttttaat
     2581 atcttttagc tcactaccgc taccgccatg aaatacaaaa tttataggct tatcgctatt
     2641 taaagcaaat ttatctttta caaatttttg cgaatttttt aaaatttcag gttgtaagct
     2701 aacatttcct ggcttgtaaa ctccatgtac atttccaaag cttgctgcga ttgaaaattt
     2761 atcactaatt tttccaagtc tttcatatgc aagagctaca tcttctggtt gggtataaag
     2821 cttggaatta tcaatacctg tattatccac tccatcttct tcgccacctg tacaacctaa
     2881 ttctatttca agcgcgacac ctaaagcatc aagtttttga agataaactt cacaagtgct
     2941 aagattttct tctaaacttt cttcgctaag atcaagcata tgagaactaa ataaagcttg
     3001 tccatgggtt tttttatatt gtgcatttgc ctcaataagc ccatcaatcc aaggcaaaag
     3061 ttttcttgca gcatgatcag tgtgtaaaat cacaggtaca ccataagctt tagcaagtaa
     3121 atgtacatgt ttagccccac taattgcacc taaaacttct ccattaggac aatttttccc
     3181 tgcataaaat tttgccccac catttgaaaa ctggataata actggagagt taactttttt
     3241 tgcagcttct aaaactgcat taatagaatc agttcctaca acattaacag cagggatagc
     3301 aaaaccctct gctttagcat agtcataaat tttattaagc tcatctccgc taatcacccc
     3361 tgcttttaca atgtctaaaa cacccattat ttatattcca ctttagcact atttaagaga
     3421 tcttggcctt tttgattgat aactttttta aattcttcaa atttaagtcc gttttcaata
     3481 ccttgtttta cttcatcaaa tttgatttga cctttagctt gcgaattttc ttttaagatt
     3541 acatgataac caaaattcgt ttttaccgga gttgtagtaa tagtaccatt tttaagcgcg
     3601 aaagcagcat ctgtaaaagg ctttaccata gttgattgat caaaccaacc aagctcacca
     3661 ccttggtttt ttgaacctgg atcaattgat ttctctttag caagctcgct aaatttagca
     3721 tctagttctt taccttttaa acctttaagt tcgttaataa tatccttagc ttctttttct
     3781 gtcgctacta agatatgttt tgcttgcact cttgcaggtt ttacatattt gtctttattt
     3841 tgatcataaa aagctttaac tttagccgca tcaattttaa tagtatttaa aattttctct
     3901 tgataaacat taacaagtat tgcatctttt gcacgatcaa gttcttttgt gtataaaggg
     3961 tctttttcta aattttgttt tttagcatct tgcaaaatta aatcttgcat aatatattgc
     4021 tgaataagag cttttttttg attatctggc aaagttttaa aatcctgtcc tctaagcata
     4081 ggggcaaaaa attcacttac ttctgtatcg ctaatgctct tgccattaac agtagctact
     4141 gtagctgcat ttacatttaa aactacacct gcaatcaaag ttgctgcgac taaagaaaat
     4201 tttttcatta ggtttccttt ttaataaaat gtatataaaa tcaattatat ctaaacttgg
     4261 tttaaagcta attaactaaa attaaaaaat gaaaagaaat ttagaaatca aagaactttt
     4321 tttaaaacat tttgacaagc ctgtaacaga gcttaaattt tcaaatttat atgagctttt
     4381 agtctgcgta atgctttcag cccaatgcac tgataaaaga gttaatctca tcactcctga
     4441 tctttttaaa gcttatcctg atattaaatc ccttgcaaat gcaaatttat caagtcttaa
     4501 aacctatata caaacttgtt cattttttaa taataaagca caaaatctta taaaaatggc
     4561 aaaagcagtt tgtgaaaatt ttgacggaga aattcccctt gatgaacaaa atttaaaatc
     4621 cttagcaggc gtaggacaaa aaaccgctca tgtagtttta atagaatggt gcggagcaaa
     4681 tttcatggct gtagatactc atgtttttag agtttctcac cgcttaggac ttagcaaagc
     4741 aaaaactcca gaagctacag aagaagattt aacacgcaca tttaaagata atcttaacta
     4801 tcttcatcaa gccatggttc tttttggacg ttacacctgt aaagctaaaa aacctttatg
     4861 taaagaatgc tttttaaatc atctttgcaa aagtaaagat aaggaactta aatgaaaatt
     4921 ttcatctttt tactcactat atctcttaat atttttgcct tagaacctta caagcctagt
     4981 gctgattttt cttcttattt taacaatata aattgctcgc aaatcttaga taagtttttt
     5041 tatctaaatt gctatgatta taaactcaaa ggcacaaaag ctgttgctta taaggtagaa
     5101 gcttcaaatt tgaaagatag acaaatcaaa aaacgccctc gctttgaaga tgatacaaat
     5161 attcctaaaa aataccgcac tacttggagt aattataaaa acagtggtta cacacgagga
     5221 cacactgcac ccaatgcttc ttttagcttt agtaaagctg ctcaaaattc agtattttta
     5281 atgagtaata ttaccccaca aaatgcacaa ataaataata aaatttggaa tgaaatcgaa
     5341 caaagagaaa gaaatttagc tttagaattt caaagtatcg aagttttaaa tttagtactt
     5401 tacgataaag aaccacaata cattaaaagc cgtattgcta taccaagttt ttatgtaaaa
     5461 attattaaaa ctccgaaatt taaagaatgc tatcaagtac caaaccatga agtaaatgat
     5521 gaaaatatta aacagtatca aataaattgt gataaatttt aaggtataaa ttatggagat
     5581 aaatgctctt acgataacca ctctttatat cataggtatt tccgcagaag gaatgacagg
     5641 ggctttagct gcaggacgcc ataaaatgga tctttttgga gttattttta ttgctctcgt
     5701 aacagcaatt ggaggcggaa gcataagaga tgtgctttta ggacattatc ctttaacttg
     5761 ggttaaacat cctgaatata ttattttaat ctgtttttgc gcccttgtag ccacaaaaat
     5821 tccgcgcgta gtaaccaaac ttgaaacttt atttctaact cttgatgcta taggacttgt
     5881 tgtttttagc atacttggag ctcaaatagc catagatcaa aaccgtggct ttatcatagc
     5941 cgttgctgct gctgtaatta ccggtgtttt tggtggaatt ttaagagata ttttatgtat
     6001 gagaatcccc ttggtgtttc aaaaagaaat ttatgcagga attgccataa ttgcaggagc
     6061 aatctattat tctctaataa tttggcttga gcttaatgcc ctagtttgca cacttttaac
     6121 tctttttata ggagtttttg caaggctttt agctatcaaa tatcaatggt ctttacctat
     6181 tttttcttac aatgaagaaa aataatttat cgttgcttta tacaagtttg ctaagatatt
     6241 aaaaatttta ggagattgat aaatgcgaag actaagtatt ttacttgcaa ttttaatagt
     6301 tattaatata acagcttgtg atagtaaaac agaaaattac tacaaaaatc ttcctagcga
     6361 agcaaaagaa aaagcgaaag aatgcaaaaa aagcggaact cttagcgaag attgtattaa
     6421 tgcattaaaa gttggtgtta aaccaacaaa tgaagagggt aaatacagtc caaacacacc
     6481 gaaaaaatct gataatcaaa tattagaagc tttaaaacaa aatgatttaa aaaaagaaaa
     6541 aaccacaaaa gatattaacc aaagttcaga aaataatgaa agtattataa taccacctat
     6601 agcagaaaca ccttctgaaa tttatccttc caaaacaaca gaaaacaatc aaagttctat
     6661 ctttagcgat gatgttaata tgacacagga aaaatgacca tgaaaataac tcttttttta
     6721 agccttattg gtatattttt tgcagcatgc gaacaaacca aaagtgtaga atattatcaa
     6781 aatcaccccg aggaagcaaa aaaaagaagt ttagaatgca gacacaaagc tatcattagt
     6841 caagattgtg ttaatgcata taagataggt tttccaaaag atgaatggga agatgaaaat
     6901 atttctaatc cttaaaagct atgaaagttt caaaatttgc ccatttaaaa atactttcta
     6961 ttttcttaaa acctgccttt tctagcatat ttaaattttc tttttgacta taaggaatta
     7021 aaacattttc caaagcttct cttttagctg cgatttcaaa cttagaatag ccttgttttt
     7081 ctttataatc agcataaagt tctatgatat ttttagacaa aaaagcatct tcataaagga
     7141 ttttttcact cataatcaaa atgcctttag agtttaaatt tttataaatt tgatcaagca
     7201 attcttgtct tttaggagga cgaataaact gcatggtata atttgctaca aaaacatcgc
     7261 aagtaaaaaa atcaaattcg cataaattag cttcaaaaaa acttatatca agcccataag
     7321 ctttagcttt tgattttgca acttcaagca tggaagcaga attatccacg ccaaaaagtt
     7381 taaaatcctt tcttagattt gccaaaaaaa tcaaaaaatt agcacttgag cagcccaaat
     7441 cgcaaacact tgcatttgta ggtaaaattt tagccaataa attgccacaa agttctaaat
     7501 tttctctata aaatggtaca gaacgattga tcatatcatc aaaaacacta gccacgcttt
     7561 tatcaaattc aaattgtttt ttagggcttt gtttaaaaag ttcatctttc atcatttttc
     7621 cttaataatt ctctagcctg ttctatatct ttagtaattt gatttttaag tttttttaga
     7681 tcttgaaatt tttgattctc tcttagaaaa gatataaact cgagttcaaa aaactctcct
     7741 tgcgtgaaat tttcacccaa ttcttctaaa atatgacttt ctatagcaaa attttcatcg
     7801 cttgatctta cacctaaaaa actcacactt ttataagttt ttctttgact ttttaacaaa
     7861 gtagcgtaaa caccattttg aggcaaaaaa taaccttcgc aatctaaatt tatagttgca
     7921 aaaagttctt tagaacctaa gccttgtcct ttaattacct ttcctttgat gctataattt
     7981 ctccctaaaa attcttttgc tttttgcaaa tttgctcttg ataaaaaatc cttaattaaa
     8041 cttgcatgaa cacctattcc acctatgcta aattcatcaa ctattatagt ttttatccca
     8101 cttaaaaact caatatcttt agcactataa gccctatttt tcccaaaaga aaaatcataa
     8161 cccacgacta taaattttaa actggtaaat tcttttttca aaaagcttaa aaaatcttta
     8221 ccatctaaag attttatact ttcaaaatcc acttctataa ctttttttcc tgaaatttct
     8281 tctttttgac gatttgaaca aagaaattga cctttaaatt tattaataac tagcaaagcc
     8341 ccattctcat ctaaatattt tacaagtttt agatgtccta aatgcatacc atcaaaacaa
     8401 cctatggcta aagaagtaat attaattttt gatatagtag taaaaatatt caacattacc
     8461 ttcctttcct ttaatgcttg atttttgcgt attttttaaa agccaaccta acttagcaca
     8521 ttctttttca aaatccattc ttgcttttaa gattgccttg tcatctttta aaacaccttt
     8581 tttatctctt ttgatatttt ttcccacttc aaactgaggt ttaaaaagta aaataatttc
     8641 ctttaaagct aaattatcga cataataaag taaattaata agagaaataa aactcacatc
     8701 acaagtaaca agttcaaatt tttcttcact tttaaaggct ctaagatctg tattttcatg
     8761 caagataatt ttttcatttg ctcttaaact tggatggagt tgattactac ccacatcaag
     8821 agcagtgatt tttaaagcct gattttcaag taaaatttga acaaaaccgc ccgtactaga
     8881 tcctatatc
//
LOCUS       DAQSLY010000065         8813 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.065, whole genome shotgun sequence.
ACCESSION   DAQSLY010000065 DAQSLY010000000
VERSION     DAQSLY010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8813
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.065"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            137..865
                     /locus_tag="R2H98_001182"
     CDS             137..865
                     /locus_tag="R2H98_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEE9024057.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            887..1666
                     /gene="peb1A"
                     /locus_tag="R2H98_001183"
     CDS             887..1666
                     /gene="peb1A"
                     /locus_tag="R2H98_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEE9024058.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1668..2420
                     /locus_tag="R2H98_001184"
     CDS             1668..2420
                     /locus_tag="R2H98_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024059.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2431..3090
                     /locus_tag="R2H98_001185"
     CDS             2431..3090
                     /locus_tag="R2H98_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024060.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3198..4127
                     /locus_tag="R2H98_001186"
     CDS             3198..4127
                     /locus_tag="R2H98_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEE9024061.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4294..6405
                     /locus_tag="R2H98_001187"
     CDS             4294..6405
                     /locus_tag="R2H98_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEE9024062.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFNGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSIAPEEITTLTTNIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLAPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6386..6583
                     /gene="kcuS"
                     /locus_tag="R2H98_001188"
     CDS             6386..6583
                     /gene="kcuS"
                     /locus_tag="R2H98_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEE9024063.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEYMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6623..7036)
                     /locus_tag="R2H98_001189"
     CDS             complement(6623..7036)
                     /locus_tag="R2H98_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEE9024064.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            7098..>8813
                     /gene="ciaB"
                     /locus_tag="R2H98_001190"
     CDS             7098..>8813
                     /gene="ciaB"
                     /locus_tag="R2H98_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEE9024065.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGHYKKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNI"
BASE COUNT         2967 a         1072 c         1659 g         3115 t
ORIGIN      
        1 aattctaaaa attactaaaa gttacacttt ggaaatttat tagtaaaaat aagttacatt
       61 ttgaagtagt tttctttatt taatgataaa ataatttcaa ttaattttat atttagctaa
      121 aaataaagga aaaaacttga ttgaattaaa aaatgtaaac aaatactacg gaactcatca
      181 tgttctaaag aatattaatc tttctgttaa agaaggtgag aagcttgtta ttataggtcc
      241 aagtggaagt ggaaaaagta caactatccg ttgcatgaat gggcttgaag aagttagttc
      301 aggagaggtc gtagttaaca atcttgtttt aaatcataaa aataaaattg aaatttgccg
      361 aaaatattgt gcaatggttt ttcagcattt taatttatat ccacatatga cggttttgca
      421 aaatttgacc ttagctccaa tgaaacttca aaaaaaatct aaaaaagaag ctgaagaaac
      481 agcttttaag tatttaaaag ttgtagggtt gctggataaa gcaaatgttt atccagcaac
      541 cctttcaggt ggacaacaac aacgcgttgc tatagcaaga tcactttgta ctaaaaaacc
      601 ctatatttta tttgatgaac ctacttcagc ccttgatcca gaaaccatac aagaggtttt
      661 agatgtaatg aaagaaattt cacatcaaag caatactacc atggtggttg ttacacacga
      721 aatgggtttt gcaaaagaag tagcagatag gattattttt atggaagatg gtgctattgt
      781 ggaagaaaat attcctagcg aatttttctc aaatccaaaa actgaaagag cgcgactctt
      841 tttagggaaa attcttaaaa attaaccaaa attgaaagga gaaaaaatgg tttttagaaa
      901 atctttgtta aagttggcag tttttgctct aggtgcttgt gttgcattta gtaatgctaa
      961 tgcagcagaa ggtaaacttg agtctattaa atctaaagga caattaatag ttggtgttaa
     1021 aaatgatgtt ccacattatg ctttacttga tcaagcaaca ggtgaaatta aaggtttcga
     1081 agtagatgtt gccaaattgc tagctaaaag tatattaggt gatgataaaa aaataaaact
     1141 agttgcagtt aatgctaaaa caagaggccc tttgcttgat aatggtagtg tagatgcagt
     1201 gatagcaact tttactatta ctccagagag aaaaagaatt tataatttct cagagcctta
     1261 ttatcaagat gctatagggc ttttggtttt aaaagaaaaa aattataaat ctctagctga
     1321 tatgaaaggt gcaaatattg gagtagctca agctgcaact acaaaaaaag ctataggtga
     1381 agctgctaaa aaaattggca ttgatgttaa atttagtgaa tttcctgatt atccaagtat
     1441 aaaagctgct ttagatgcta aaagagttga tgcgttttct gtagataaat caatattgtt
     1501 aggttatgtg gatgataaaa gtgaaatttt gccagatagt tttgaaccac aaagttatgg
     1561 tattgtaacc aaaaaagatg atccagcttt tgcaaaatat gttgatgatt ttgtaaaaga
     1621 acataaaaat gaaattgatg ctttagcgaa aaaatggggt ttataatatg aatgaaagtg
     1681 taggttttgt tgaacattta agacaaattc ttacttcttg gggtttatat gatgaaaata
     1741 gtataagccc ttttgcggta tggaaatttt tagatgcttt ggataataaa gatgctttta
     1801 ttaatggttt tatttatact ttagaagtaa gcattcttgc tttgcttata gctacaattt
     1861 ttggaactat aggcggagtt atggctacaa gtagatttaa aattatcaga gcctacacta
     1921 gaatttacgt agagcttttt caaaatgttc ctttggtaat acaaattttc tttttgtttt
     1981 atgccttgcc tgttttaggt ataaggcttg atatatttac tattggtgta ttgggtgttg
     2041 gggcgtatca cggagcttat gtaagcgagg tggttagaag tggaattttg gctgtgccaa
     2101 gaggtcagtt tgaagcttct gcgtctcaag ggtttactta tattcaacaa atgcgttata
     2161 ttatagtacc tcaaaccatt agaattattt taccaccgat gacaaatcaa atggtaaatt
     2221 taattaaaaa tacctctgta ttgcttattg taggtggagc tgagttaatg cattctgctg
     2281 atagttatgc agctgattat ggaaattatg cgccagctta tatatttgca gcggttttat
     2341 attttataat ttgctatcct ttggcttatt ttgcaaaagc ttatgaaaat aaattaaaaa
     2401 aagcacattt aacgagataa agggttgtta atggaaaatg tttttaatgc gcaaaatatt
     2461 gaatttttaa tgcaaggttt atttctgaca ttaaaaatag ccttggcaac ttgtattatt
     2521 tcgattgttt ttggaacttt tttagctata actaaaaatt atggggatag attaagtaaa
     2581 tttttagcag cttgctatat agatattttt agaaatactc ctttattatt atggatgctt
     2641 gcagcttgtt ttgttctacc tgtatttttt ggacaatttc ctcaagcttt ttggggtact
     2701 ataggatttt cactttatac gagttcggtt atggctgaaa ttattagagg tggattaaat
     2761 tctataccaa aaggtcagtt tgaagcagct tattctcaag gttttggtaa attttttact
     2821 cttttttata ttattttacc acaaactttt agaaaaataa tacctgcttt attatctcaa
     2881 attgtaacca ctgtaaagga tacagcttat ttagcgggtt taggtatagc tgaacttact
     2941 tataattcaa aaactatatt ggcaaaacta acaagttttg aagaaatttt agcgatgata
     3001 ggtgttgttg cgggaattta ttttataata tgtttttcac tttctatgtt ggtaagatat
     3061 tatgccaaaa agacagctta catttcttaa aaaagcttat atttttatat aagcttttta
     3121 aatttacagc agtttttaac atttttttta ttaaaatctt ttgtattaat tcataatttt
     3181 attgattaag gttttttatg cgaggttata aaattttttc aggctcagct aatgtcgaat
     3241 ttgcaagaca agtttctaaa tatctctccc tgcctttaag tgatgctgga gtaaagcggt
     3301 ttagtgatgg agagattagt gttcaaattg atgagagtgt acgcggaaag gatgttttta
     3361 ttattcaaag tacttgcgct cctacaaacg ataatttaat ggaactttta attcttacag
     3421 atgctttgcg tcgctcaagt gcaaattcaa ttacggctat tatcccatat tttggctatg
     3481 cgagacaaga tagaaaagca aatcctagag tgccaattac tgctaaactt gtggctaatt
     3541 tgattcaagc agctgggatt gatcgcgtag ctacgataga tttgcatgca ggacaaattc
     3601 agggtttttt tgatattcca gtagataatc tttatggaag tatagttttt aatgattaca
     3661 ttaaagccaa acattttaaa aatgctatta taggaagtcc agatataggg ggtgttgcaa
     3721 gagctaggag tgttgcaaag catttaggac ttgatatagt tatagttgat aagcgtcgtg
     3781 aaaaagccaa tgaaagtgaa gtaatgaata ttattggaga tgtaaaagat aaagaagtta
     3841 tcttagtgga tgatattatt gatactgctg gcactatagt taaagccgcg gaagctttaa
     3901 aagaaaaagg tgcaaaatct gttatggctt gctgtactca tgcagtttta agtggaaaag
     3961 cctatgagag aatagcaagt ggagttttag atgagcttgt ggtaacagat actatacctt
     4021 taaaagagca attaccaaat attaaagtat taagcgttac acctgttttt gctgaagtaa
     4081 tacgtcgtgt ttatcataac gaaagtgtaa attctctctt tatttagatt aaaaaagctt
     4141 aaagattatt tttaagcttt tcatttttat gctacttaaa gaaacaaaaa acatatattt
     4201 ttttaaaaat gtgaaaaaac taaacatctt tctatataat ttaatctata aatctgctat
     4261 tctttgaaaa tattttattt tcttaggaga aatatgactc agttaagtac taaaatttta
     4321 tggttgtttg ttgcaacttt aggcgctatt tgttttggtt atttagcttt acaaaatggc
     4381 gaaagtgtat cagcgattta tttggtggtt gctgctgtat gtatttatat gataggatat
     4441 agattttatg ggcgttttgt agcttataag gttttagaac ttgataaaaa tcgtgcaaca
     4501 ccagcacttg tagaaaatga tgggcgtgat tttgtgccta caaataaagc tgtattattt
     4561 ggacatcatt ttgctgctat tgcaggagca ggtccattag taggacctat cttggccgct
     4621 caaatgggat atttgccttc tatgctttgg attttagtag gaggagtttt agcgggtgct
     4681 gtgcatgatt ttgttgttct ttttatatct actcgtagaa aaggtagaag tcttggcgag
     4741 atgattaagg atgagatggg taaatttaca ggtggagttg ctatggtggc gatttttggc
     4801 attatgctta ttattattgc cattttagct atggtggttg taaaagcttt agcagaatct
     4861 ccatggggtt tatttactat cgcaatgact attcctatag caatatttat gggcatttat
     4921 atgcgtttta tccgtccagg tagagtaggg gaggcttcta taataggttt tgtgctttta
     4981 attttggcta ttcattatgg tagcgttata gctgctgatc cttattgggc taaaatattt
     5041 actttagaag ctccaacttt ggcaattgtt atgatggctt atggttttat tgcttctgtt
     5101 ttacctgtgt ggtttttact tgctccaaga gattatcttt caactttttt gaaaatcggt
     5161 gttattgtgg taatggctgt agctattgtt ttggttgctc ctgatttaca aatgccaaaa
     5221 gcaaatactc agtattttaa tggaacaggt ccagtatttg caggtggagt gtttccattt
     5281 ttatttatta ccattgcttg tggtgcgatc agtggttttc atgctttgat ttctagtgga
     5341 actactccta aaatgcttga aaacgaaact catactttgg ctgttggata tggctctatg
     5401 cttgctgaga gtgctgtggc gattatggct ttaatttgtg cttgtatttt acatccaggt
     5461 ctttattttg ctataaattc aagctctgct ttgataggaa cagatgttgt aaatgtagca
     5521 caaactattt caagttgggg atttagtatt gctcctgaag aaattactac tttaaccaca
     5581 aatataggag agcatactat actttcaaga acagggggag ccccgacttt tgctataggt
     5641 gtagctttga tcttgcatga actttttggc ggcgtggatt tgatggcttt ttggtatcat
     5701 tttgctatat tgtttgaagc tttatttatt ttaacagcgg tggatgctgg gacaagggct
     5761 tgtcgtttta tggtgcaaga tatattgggt aatgtttata aacctttagg agatattcat
     5821 aattatccag ctggactttt ggctacggct ttaagtgttg caggttgggg atattttctt
     5881 tatcaaggcg ccattgatcc taagggagga atttatacac tttggcctct ttttggcgtg
     5941 agcaatcaaa tgcttgcggg tatggctttg cttcttgcta caactatact tgtaaaaatg
     6001 ggcaaggcaa gatatacttg ggttacttta gcacctgcgg tatttgtctt agtggcaact
     6061 ctgtatggag gaattcaaaa aattatgcct tatgaagaag gcaataaaat agcaaatgcg
     6121 gtaagtcatg tagccgccgt tagcatacaa agtcaaaaaa ttaaagattt agaatttaaa
     6181 ttaaataata ctaaagatga aaaagaaatt tctacaatta gaaaagaaat ttcaatagcc
     6241 actcaaaata aagttggaaa tttacttaat gcaattcttt gtgtgttctt tatgatagct
     6301 accttgcttg ttataatttc ttgtatagga atttgcttag gtaaaattaa aattcctctt
     6361 aaagaaacta agtatattaa gattgatgaa tttcaaaaaa tttaagtatt attatgaaaa
     6421 agccgaaagg ttttttcatc ccttggtggg actttctagt tatgataagt atttagaata
     6481 catgaaacaa aaacatccag gaaaaattcc aaaaaccaga ggggaatttt tcaaagaatg
     6541 tctagataaa aaatataata gtggcggttt aaataaatgc tgataagctt aaaggataaa
     6601 gttttatcat acaaaataag ctttaagcat ttaaaaagcc atgaattctt ttaagttctt
     6661 cactaatagg ttttttcttt ccatctcttg taacacttac ataagttact aaagccgaag
     6721 ttacattaat gcaagaagta caaccttgag aatccactct ttgagctgtg acttctactt
     6781 caacgctgat tgaagtgttg cccacattta caactttaga gtaacaagaa attatatcgc
     6841 ctataaaaac aggttcttta aaaactactt tatccataga gatggttaca acgcgttcag
     6901 gagaaagttc tcttgctgcg atagctcctg ctaaatcgat ttgtgaaagt atccatccgc
     6961 caaaaatatt tcctgctgga tttgtgtcac ttggcatagc tacaattttt aattttggtt
     7021 ctcccatatc tctcattttt actccttatt ttaaaaaatg aattataatt aaaaaagtta
     7081 aaaaggagaa taaaagcatg aataatttta aagaaatagc taaattggtt agaaaataca
     7141 aagaaagaaa taatgcgtta tatgagtttt tagacaaaga agatgtgggc gagtatttta
     7201 gatctttgat ttctttaagt gagttaaaac aagataagac aactatgcta gccatactta
     7261 ggcgtttgat tgatttaaaa gaagaaaatt tagttcaaga gtggaaaaaa aacaacttta
     7321 aggaagataa gattatagag ttaaaacata agttctatga agaggttaga aagttttatg
     7381 aaaaagaaca tcaaaattta attaatgaaa taaaagagaa aaaactttta aataattttt
     7441 atcagtcctt aatacaagga gtgcataata taggtttaat tatgaatatt tttgaaattt
     7501 cttggactaa agaaattata gaaaaaaata ataaaatttt atctactcaa tttccaaatt
     7561 tagatgatgc aatggaattt ttacgtaaaa atcatttata tcaaaaaact ccagaaggag
     7621 aaatttgtga gcgaagctat ggtgttttag ttagaatagg aaatttatgg aaatttgttc
     7681 cttatgcgag atttttcgag aatgaaattt taaaattaga atttgctttt gaaaatatga
     7741 ttgatcagct taaaatattt gctagcagcg aagaggaaaa agcttatata gaatattttg
     7801 aaaaattaaa attagcgttt tgtgaaaaag atgaagatag ggttataaaa gcttggcaag
     7861 aagctgaatt tgcttggatg aaagtaaaat cacctttaca agtgggacat cccttagaat
     7921 attatgaaga taattatact catgcggtgg cattagaatg ggatataaga atagaagatg
     7981 aaaatgattt tgatgttttg aaatttggta atgaaattaa ggaaagtttt gaacatgttt
     8041 ataaaaatat aggacttgaa gattgtgaat tagaaaaaga agttttatct aatatagaaa
     8101 aaactcaact ttatatttgc actccgatga tattttatgg tgctgaactt aaaggtttat
     8161 tctcagctca agtcgttcca aatgatgagt ttgtaagttc taaggcgggc aaaaaaatat
     8221 ttgcctttat aaattttgta tatgaaaatg ctaaaacaaa gccttttatg aaaatttcta
     8281 gcgaggtttt tgataaagaa tttttggatt ttggaagaaa tattttattt tatcaggaaa
     8341 aaatttggaa aagggtttat gaagtatcaa ctataggcca tgaatttggt catatatttt
     8401 ttattgctaa tgataccgaa aaaacaatga atcagagtgg tttttttaaa aatatagaag
     8461 aatataaagc tactacaggt ggacttataa atttctttta tcatgaacaa gatgacttga
     8521 taatgcctgt ttttcatgaa ctgataaaaa gagctattgg acttatttct tggcaaaggg
     8581 ttgatgaagt tagaccttat tatacagaag gacttattca tcttagtttg ctttttgaaa
     8641 gtgaagtatt gatttttgaa aataataatt tgaagataaa ttttgattta gggcattata
     8701 aaaaatttaa agaactaact ttaaaaaatt atcatgaatt agcaaaacac tatgctttaa
     8761 gacttgatgc aaaagagttt ttaagtagat tttgtgaaat tgaagataat att
//
LOCUS       DAQSLY010000066         8797 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.066, whole genome shotgun sequence.
ACCESSION   DAQSLY010000066 DAQSLY010000000
VERSION     DAQSLY010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.066"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            47..898
                     /locus_tag="R2H98_001191"
     CDS             47..898
                     /locus_tag="R2H98_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEE9024066.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
     gene            895..3162
                     /locus_tag="R2H98_001192"
     CDS             895..3162
                     /locus_tag="R2H98_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEE9024067.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGIYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHGFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINPFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKIPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            3175..3936
                     /locus_tag="R2H98_001193"
     CDS             3175..3936
                     /locus_tag="R2H98_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEE9024068.1"
                     /translation="MLKKIFLFCFLLLNLNAEVNVTDTNLSFDSPKIEAEVPKIELSL
                     SSLYQNADEVVKGVIYILVLFSVLAWAVFISKLMQFYFMKKNLDFSIHKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            3923..4333
                     /locus_tag="R2H98_001194"
     CDS             3923..4333
                     /locus_tag="R2H98_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEE9024069.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            4335..5081
                     /locus_tag="R2H98_001195"
     CDS             4335..5081
                     /locus_tag="R2H98_001195"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEE9024070.1"
                     /translation="MKSSVIFGFVLSLILHALVLMFFLFSFYTQEKSSGVDFKQGLEF
                     TSIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDERISLNSQDKNAVLKVQKKIEKQD
                     ENQAQKEVANASENSKFKNESFSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEVLSLFKRASPLP
                     KPPKEMLKDGEKISFVMPIDYNIKDYLGKK"
     gene            5137..6336
                     /locus_tag="R2H98_001196"
     CDS             5137..6336
                     /locus_tag="R2H98_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEE9024071.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYMQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNTTQKAEEKFENNASLIQEANQKAQENFQKANFINKGALYYYQSL
                     LEYFFNSRAMIEKESYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIRALMTLVAFIPILWTLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNISYKS"
     gene            6435..7793
                     /locus_tag="R2H98_001197"
     CDS             6435..7793
                     /locus_tag="R2H98_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEE9024072.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSMLMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(7806..>8797)
                     /locus_tag="R2H98_001198"
     CDS             complement(7806..>8797)
                     /locus_tag="R2H98_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEE9024073.1"
                     /translation="LLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYVIVFDSSL
                     KQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQMPNLSKY
                     KKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLKICEKENV
                     CLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLKECLYYKF
                     QNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFTSDNLYQI
                     FGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYKKK"
BASE COUNT         3054 a         1193 c         1520 g         3030 t
ORIGIN      
        1 taatattcaa tatcaaaaat aaaccactaa gaaagtaaca ataataatga aattttatac
       61 tattttaagc attctattta taagctttat gttgagcgct tgtgctgttt tgcaaaaatc
      121 atctccactt caagaaaata aagattttta tatacttgat acgcatactc aaaaaaagat
      181 ttcttttgaa gatatgattt tagaattgct aaaagcagat gtgatactgc ttggcgaaaa
      241 acacgatgag gttaaacata agataagtca agttatgatt tttaatgcct tagaaggaaa
      301 tttaagttct caaaatataa actttgatgt agctttagaa atgttagcaa gcacagagca
      361 aaatcactta gataaagctt ttaaaaataa aaaaaccatt aaagccaatg aacttactaa
      421 tgcattaaat tgggataagg tctggaaatg gaaagattat gagcaatttg tcaatgtggt
      481 tttttattca aagtcaaaaa tattaggtgc aaatctttca cgctcagaaa ttacaagtat
      541 ttataatggg gctcagccct taaagggtta tgtttcaacc acaaatgaag taaaaaaaca
      601 actttttgac attatatcct taagccataa gctaaatcct gaagaaaata aagaattact
      661 agataaattg gtggaaattc aacaattcaa agacaggcgt atggctgatg tattggttca
      721 tcatgtaaat aaagttttat tgctagctgg aagctatcat acaagtaaaa aaataggaat
      781 tcctttacat atacaagatt ttaaaagcag taaaaaaata gttgtagtga atttaagcta
      841 tggagaaata gatttaaaag acagtgatta tgttttgatt tataaggggg aggaatgaaa
      901 aaattaagtt tattttgtgc tgtaggttta tgttttgcta gttttgcttt ttctgaagaa
      961 ttagaatttg atagtcttga aatttcaggt tcaaaaatca aaaacgatga aaaacctttt
     1021 gtaactcctg gagcaacaag cacaagagag ggtataggtt cagatacgca aagtatagat
     1081 tctatagtgc gtagtatacc tggaatctac acaaacacag atcaagctca aggtacagtt
     1141 caagtaaata ttcgtggtat gagtggtttt gggcgtgtta ataccatgat tgacggtgtt
     1201 actcaaactt tttatggtag tgcatcagat gatccagcta gatttcattc acaaacggga
     1261 acttcagctt ttggagctgt tattgataca aatttcttaa tcggagttga tgttacaagg
     1321 ggaacttttg aaggagtagg tggagcaaat gccttgatgg gatcagcaaa ttttaagacc
     1381 ataggtataa atgatattgt acatgatggc aatatctttg gatttttagg acgattttct
     1441 tatggaagca atggaatcgg accaagttat atgagtgcag tggctggaaa gactgaactt
     1501 gaaaataatg gatatgtggg cgcgcttttt ggttatagcg caaagagaat tactcaaaat
     1561 tacactgtag gcgggggtgg caagataggt agtagtatgg ttgatactga tggagatggt
     1621 atagctgata ccaatatcgc tccttttgat ccagattttt taacccaaaa accaaactct
     1681 caacttttta aactcgaata tgtcccaaat tcttttacaa acactatatt ttcttatcgt
     1741 agatatcaaa acgaacttgc cggtagaaaa atacacaatg acaattatca acttgatttt
     1801 tggcacaacc ctaatgagtg gcttaatgta aatacgctta ttgcctacaa tcaaggcata
     1861 caaacctatg gatcaaaatc tacttttgcg gcaaacgatg ccatagctaa cacaaaggca
     1921 aaaaatactg ccactacttt tgatataagt gatactttag agggtgaatg gcatggattt
     1981 aatctaaaca cacgctttgg agcaaatatt ttgcttaatg attataaaaa taccttaaat
     2041 acatcaattc aaggagtaaa ttctatacct tttcagcctc gtggaaaaca aaatcttttt
     2101 acttattatc ttgataatag tctaaattat ggtatcttta cacttgatac taatgtgaat
     2161 cttttagatt ggaatatcaa aggacacaga cctgcttgcg atgaagtaaa ttttatgtgt
     2221 tttccaaaag cggcgacaga tatagataaa aatggacttc gcttgaatgc ttctgtcatg
     2281 ctttcagctg ccatacacga gctttttaca ccctttgtaa gttttgcgag aacaaataga
     2341 gcccctaatg tgcaagaaat gtttttctca aataacgaag gcaatggtat caatcctttc
     2401 ttaaaaccag aacaagccaa tacttggcaa ataggtttta attcttttaa acatggactt
     2461 ttaaaagatg atgatcgctt tggttttaaa gccgtgtatt atcatacaaa aataaaagat
     2521 tatatttata atgaacaatt ttatcttgaa gatccaagta aaattcctcc aagctcgcaa
     2581 ttttatatgc acttaaattc agctgatgat actatattta agggtgtgga gttagaatta
     2641 agctatgact tgggttttgc ttatgctaaa gctatgtatt caagacaaga tacaagttcg
     2701 actatttctc aaacttcagg acctcttctt ggctcttttt cggcaagtaa aatcatggag
     2761 cttccaaaag attatgcaaa tgtagagctt ggctttaggc taaatgacaa aataagcttt
     2821 ggtggtatag caaaatacac aggcaaagca aaaagggtaa atccaaatac agatgattgg
     2881 aataaggatc caaacaatcc ttattatcct aaaccaacca cacaagactt accaaaaatt
     2941 cctattatag tagatttata ttggaatata gaatggttta aaaacctcac aatgagagca
     3001 gaggtgcaaa atttatttga taaaaactac atggatgcct taaatgctta taattcctta
     3061 gataatcagc ttcaatataa tggagcaggt gatcctatct atctttttag caattctgct
     3121 cgcggtcgca cctttatagt aagttttgaa tataaatatt aaggaaatat ataaatgcta
     3181 aaaaaaatat ttttattttg ttttttattg ttaaatttaa atgctgaagt gaatgtaaca
     3241 gatacaaatt tatcttttga ttctcctaaa atagaagccg aagtaccaaa aatagagctt
     3301 tctctttcta gtctttatca aaacgctgat gaggtggtaa aaggtgttat ttatatattg
     3361 gttttatttt ctgttttagc atgggcggtt tttatttcta agcttatgca attttatttt
     3421 atgaagaaaa atttagactt ctctatacac aagataaaag aattaaaaaa tctcaatgaa
     3481 ttagatcaga caaaggattt tgcaggtgtt ttatctttag aaattcaaga tgagcttgaa
     3541 aaaagtgaat ataaaaatga tcacataaaa gagcgtatag aattgcgttt gcaaaatacc
     3601 atctcaaagc aaatcacagc aagcaaaaat ggcttgagct tgcttgcgag tataggtgct
     3661 agcgcacctt ttatagggct ttttggaaca gtttggggaa ttatgaatgc atttataggt
     3721 atagcaaatc ttggcaatgc ttctttggca gtcgttgcgc ctggtatagc tgaagccttg
     3781 tttgctacag cttttggctt gatagctgct atccctgcgg tgctttttta taattatctt
     3841 acaagaaaaa atttaaaact tatgcaccat ttagatgagc ttgcaaattt tgtctatata
     3901 ctttttcata ggagttattt taatgataaa aactgaaatg gctcacaaag aagaggagtt
     3961 aagtgagatc aatataactc cttttataga tattatgctt gtattattga ttgtttttat
     4021 ggctgttact cctcttatca caagttctat caaaatagaa ttacccaaga gttcgcagca
     4081 agcagaggat aagcttaaaa atcccatcat actttattta aatactgata atactttggc
     4141 tattaatgat gataaattaa gcctagaaaa tctttcaagt gctttagata taaaaaccaa
     4201 aggcaataaa gaagaaatta tttattttca tatcgataaa agtgtaaagt atgaagatat
     4261 tatgcaagta atgcaaaaat taaaagagaa tggctatgga aaaatagctc tttcaagtaa
     4321 aaagatggat tagtatgaag tctagtgtga tttttgggtt tgtgttaagt ttgatattac
     4381 atgctttagt attaatgttt ttcctttttt ctttttatac tcaagaaaaa tcaagtggtg
     4441 ttgattttaa acaaggatta gaatttactt ccattatgat ggtatcagag cttcctatcg
     4501 gggaattaaa agaagtttcg atcgatcaaa aaaagagtaa ttctcaagat aaaaacaaaa
     4561 aacaagacga aagaataagt cttaattctc aagataaaaa tgctgtatta aaagttcaaa
     4621 aaaagattga aaagcaagat gaaaaccaag ctcaaaaaga agtagctaat gcaagtgaaa
     4681 attcaaaatt taaaaatgaa tcgttcagtg ctccgctaca aagtaatgaa gataaaacac
     4741 aaactatagt aagtggcaat gccaaagaac aagttaaaag ctatcaagct ttgcttatgg
     4801 ctcatttgac taaatttaaa aaatatcctc aagaagcgat aatgcaaaaa caagaaggcg
     4861 ttgtaagaat tcgcgtaagc attgatgaaa gcggaaatgt cttaagcaaa gagcttaaaa
     4921 aatcttgccc ttatgcagcg ctcaatgatg aagttttaag tttatttaaa agagcttctc
     4981 cattgccaaa accgcctaaa gaaatgttga aagatggtga aaaaattagt tttgttatgc
     5041 ctattgatta caatattaaa gactatttag gtaaaaaata aactcttgat taaataaaat
     5101 tgattaaaat tttcgttttg agattaaggc ggtggtatgt tttcttcgtt ttttgcaagt
     5161 aaaaaatggg ctttatgggc ttatttgggg ctttttttgc ttttattttt cttatatatg
     5221 caaacaagct taaatgttgc gatcaattca tggtatagtg atttttataa tgttttacaa
     5281 aaaccaaaaa tagagctttt agattctaat acaacgcaaa aggcggaaga gaaatttgaa
     5341 aacaatgcaa gtttaatcca agaggccaat caaaaagcac aagaaaattt ccaaaaagct
     5401 aattttatca ataaaggcgc actttattat tatcaaagtt tattggaata tttttttaat
     5461 tctagggcta tgattgaaaa agaaagctat tctgcgagtg atttttatgc tttgatttta
     5521 gtatttttag ctattgctat tccttatgtt ttaattgcaa cgattaatat ttattttgct
     5581 agtgtttacg cctttaagtg gcgtgaagct atgacttttt cttatttgaa attttggaaa
     5641 aataaagatg ataacataga aggaagttcg caaagaattc aagaagatac ttataatttt
     5701 tctaaaattg tagaaagctt aggacttagt tttataagag ctttaatgac tcttgtagct
     5761 tttataccga ttttatggac tttaagcgat gttgtaagca aggctttatt tgcaaattta
     5821 agtgagaatt ctagctttta ttttttaaaa aacatcgatg gtttgcttgt ttatgttgca
     5881 cttttgattt ctttaggagg attaatcgta tcgtggtttg taggaattaa acttccagga
     5941 cttgaataca acaatcaaaa agccgaagca gcttttagaa aagagcttgt ttatgctgaa
     6001 gataaccgca aagaatacgc taaaaatgag actatgatag agctttttac agggcttaaa
     6061 tttaactata aaagactttt tttacattat ggatatttta atatttggct cattttattt
     6121 gagcaaatga tagttatagt gccattttta atcatggcac cagggctttt tgctggagct
     6181 ataggacttg gtattgtaat gcagattaat aatgcatttg atcaagtgcg aagctctttt
     6241 agtgttttta tcacaaactg gacaactatc actcaactta gaagtatata taagcgttta
     6301 aaagaatttg agaaaaatat ttcttataag tcttagtttt ttcttataaa atacaagaaa
     6361 aaattcaaat attaaattta cttttaattg tgtataataa ggtttaataa tattttattt
     6421 cttaaggagc ttcattggac cccagtcagg ttttggattt aaaccaaact tctacagcat
     6481 cttttgatgc aggatattct atgcttatgg ttgttgttgc acttgctcta gtgtttttaa
     6541 atggtttttt tgttttgtct gaatttagta ttgttaaagt acgtcgttcc aagcttgaag
     6601 agatggtaaa agaaaaaaaa gctggtgcca agaaagcttt ggaggttact tcaaggcttg
     6661 atacatatct tagtgcttgt caattaggaa ttactttaag ttctctagct cttggttgga
     6721 taggtgagcc tgctattgca aaaatgctag aaattccgct tattaatctt ggttttagca
     6781 ctgttattat ccatactata gctttcatta ttgcttttag cattattact cttttacatg
     6841 tggttttagg agaacttgtg ccaaaaagta tagctattgc agttgcagat aaagcggttt
     6901 tatttatagc tagaccgctt cattggtttt ggatgctctt tttgccttgt attaaaattt
     6961 tcgatttttt agcagctata agtttgaaac tttttggaat aaaacctgct aaagaaagcg
     7021 agctaactca tagcgaagaa gaaattaaaa tcatagcaag tgagagtcaa aaaggtggag
     7081 ttttagatga atttgaaaca gagatcatac gcaatgctgt tgatttttca gatactgttg
     7141 ctaaagagat tatgactcct agaaaagata tgatttgtct aaataaacaa aaaagttacg
     7201 aagaaaatat gcaaatcatt tgtgagcata aacatactcg ctttccttat attgatggct
     7261 ctaaagatac tattttaggt atgatacaca tacgagatat aatacaaaat gaattaaacc
     7321 ataaaagtca aaatttagat acttttgtta aacctttgat tttggttcct gaaaatatca
     7381 gcatttcaaa agtacttgta atgatgaata aagaacgctc tcatactgca ttagtagttg
     7441 atgagtatgg tggaactgct ggaattttaa ccatggaaga tatcatggaa gaaattattg
     7501 gcgaaattaa aagcgagcat gaagaagaca gctataaaaa acttgctgaa aatatctatg
     7561 aatttcaagg acgatgcgat atagaaactg ttgaagaaat gcttgtaata aactatgatg
     7621 aggatttaga acaagttact ataggtggtt atgtatttaa tcttttagga cgcttgccta
     7681 tggtaggaga tcgcattgaa gatgaacttt gttactatga agttaaaaaa atggatggga
     7741 attctataga gcgtgttaag gtggttaaaa aaacaaataa agatgaagaa taagcctctt
     7801 taggcttatt tctttttgta aatttggttt ttaatttcta tacactcaaa acctttttca
     7861 tctagtgtaa ctacgcgtaa atatccacca tcatctattt taccctcgca taaaaatact
     7921 cttttggcta ttttcatagg aagtttttct ttatttctgt gtccaaagat ttgataaaga
     7981 ttgtccgagg tgaaattaca aaattgattt gctacttttt gactgtcttc atatccacct
     8041 acaccataaa taaagtcatg gcttggtata aaacttattt tttcaggttt ggagggtata
     8101 aaatttactc ctccatgtga acaaaatatg aatttatttt ggaatttgta gtataaacat
     8161 tcttttagat gaggatagag ttttctagca tctcttggag taagtttttc ttttctaaaa
     8221 tcctttaaag tattttcatt aaattctttg gaatttgaca attctccatt agcccatttt
     8281 ataagatgtc tttcgtgatt tccttctaat aagcatacgt tttctttttc gcaaattttt
     8341 aaaagaaatt ttattacttt gccattttct atacctctgt tgatataatc tcccaaaaat
     8401 atataaaatt catcttcttt gattgtttta atgtattctt ttaaaacact atagcaacct
     8461 tgtaaatctc ctatatgatg aatttttttg tatttgctta aatttggcat ttggtaaaga
     8521 cattttttcc agtctcttga gtctaaaatt gggtattttt ttggattttt tttgagcaaa
     8581 tcttgagttt tttccaaaag agcataagga atgatatatc catttttttt agcttctaaa
     8641 agattttttt cttgacattg ttttaaagag ctatcaaaaa caataacata tattttatag
     8701 cgatattgtt tagctaagtc tttataaatt tttaatgttt cgttgtaagc gtttatgatg
     8761 ctaaactcac ctttttgcat acgcatttct agaagtt
//
LOCUS       DAQSLY010000067         8535 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.067, whole genome shotgun sequence.
ACCESSION   DAQSLY010000067 DAQSLY010000000
VERSION     DAQSLY010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.067"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            47..1120
                     /gene="ispG"
                     /locus_tag="R2H98_001199"
                     /gene_synonym="gcpE"
     CDS             47..1120
                     /gene="ispG"
                     /locus_tag="R2H98_001199"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEE9024074.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(1150..1848)
                     /gene="flgH"
                     /locus_tag="R2H98_001200"
     CDS             complement(1150..1848)
                     /gene="flgH"
                     /locus_tag="R2H98_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEE9024075.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            1938..3443
                     /gene="pta"
                     /locus_tag="R2H98_001201"
     CDS             1938..3443
                     /gene="pta"
                     /locus_tag="R2H98_001201"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEE9024076.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            3457..4647
                     /locus_tag="R2H98_001202"
     CDS             3457..4647
                     /locus_tag="R2H98_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEE9024077.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKLKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(4675..8427)
                     /locus_tag="R2H98_001203"
     CDS             complement(4675..8427)
                     /locus_tag="R2H98_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEE9024078.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDESSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLKFILNQLLNFKDKNLSFKRDYKTLS
                     VEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKKVEKYTF
                     YKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSALKDKLNNENILKFKILDNACGSG
                     HFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNHIKDFVQDYEVDESDILKRLL
                     LKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFIEHHIKCGNALINSNLSDFKDLI
                     KQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPKLKKLNLY
                     LNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAVISKYQKEFNFFNYELEFPEI
                     VENQVFKGFDIIIGNPPWDKTKFSDDDFFPQYKSDYRSLIASKKKEIQDNLLAKDYIK
                     QNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAYVLPSAL
                     MFEDGSLTLRKEILENKTLEYFYSFENRQAIFADVHKSYKFALMQVKNTQANHTHKIK
                     TMFYKTDMNSLKNKDEILTLSLKDIKKLSPTHLALMELKDKQALEILRKCYNAFQNLS
                     FDYIDFVNELHMTNDKDLFIEEFREGLLPLFEGKMIHQFDTNFSQATYFLEKAKFDER
                     LKSKELSRAKKATGKELNPKLIKYDREFFRLGYRTIASDTNERTLIASLLPKNCGCGN
                     SVYSNIPKQYIVKDDAICMDIVPYERILFVLALFNSLVVDFIIRNMVQINVSKTYLER
                     IPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDKNHHFDELKQEFNIKNEEIPKTKKAY
                     DILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLIKTI"
BASE COUNT         2814 a         1150 c         1380 g         3191 t
ORIGIN      
        1 ataaaaagtt aaaatttgat attaaaattt ttcaaagagt gaagttatgg agtataaaag
       61 atttaaaacc agacaaatca aagtaggaaa tgttttaata ggcggtgatg cacccatttc
      121 agttcaatct atgcttttta ctaaaacaag agatatagaa ggttctttag aacaaatcaa
      181 tcgtctttat tttgcaggag caaacatagt gcgtttggcg tgcttggata tggctgatgc
      241 aagggcttta aaagagatta aagctaaaag tcctctacct ttaatcgtag atattcattt
      301 taatcataat ttggctgtat attgtgctga atttatcgat ggcgtgcgta taaatcctgg
      361 caatataggc tctaaagaaa atattaaaga agtggtaaaa gcatgtaaag aacggggtat
      421 ccctatacgc atcggtgtaa atcacggctc catagaaaaa caatttagtg ataaatttgg
      481 ttatggtgtc gatgccatgc tagaaagtgc gatgtataat atcaagcttt tagaggattt
      541 agactttttt gatattaaaa tttccatgaa gacttcagat gctcaaaaaa ctatagaagc
      601 ttatgagaga ttaagaccgc tttgtgatta tccttttcac ttaggggtaa ctgaagcagg
      661 aactaaattt catagcactg taaaaagttc tatagcttta ggaaatttac ttcttaaagg
      721 tataggcgat actatgcgtg tttctatgac gggtgagctt gaagaagaaa ttcgtgtagc
      781 aagagcaatt ttgcaagata gcggagtaca aaaaagcgga gtaaatatta tttcatgtcc
      841 aacttgcggt aggattcaaa gtgatttgtt aagtgcgatt aaaatcgtag aggaaaaaac
      901 caagcatata aaagaacctt taaacatcag tgtcatgggt tgtgtggtaa atgctttagg
      961 cgaagccaag ggcgctgatg tggctatagc ctttgggaaa aatcaaggac ttgtcataag
     1021 acatggtgaa gttgtagcta aattaaaaga aagtgaactt gtagatagat ttttagctga
     1081 agttgaagat gaggttaaaa gtagggctgt aaaagaataa aagcctaaaa gcaaggttta
     1141 accttgcttt tagaatggcc atatcgcttc tataacttta ctaccccaag gttttcttgt
     1201 gcttctatcc acttctcctt ctgttttata tagaatttta gcatctgcta tatatttact
     1261 atctatagta ttgtcttgac cgatgtcata aggacgaata acaccgctta attgtatgat
     1321 ttgcttctct ccgttgatta aaagctctct tgaaccttcg ataaaataat taccatttga
     1381 taaaatttta attacacgtg ttgaaattgt agtattgaaa ctttcatttc tactttgtga
     1441 gcctgttcct gtgtagttgt ttgaactatt ggtttgaaag cctatattag aataagcatt
     1501 gactttatta agagcattag ctaccactcc tgaacttcct gttaaagcac ctccgcctaa
     1561 atttgaggta ttagttctac ttgttgcttt attagcttgt gtgctttgag tggtactttc
     1621 ttgtataaca actgtaacta aatcatttac attcatagct tttttatctg aaaataaagg
     1681 attatcccct ttgccaaaaa gcgatcctgg tgcactttct acattattgc tttgttttgg
     1741 tgcaagttct tctacataag caggtggttt cattgaaatt tgcggatcaa ccgttgcaga
     1801 acaaccaaaa aatgcaaacg gtaacacata aaataaaact tttttcattt tcgtccttta
     1861 aaatatgaat ttttattttt ctttgttaaa attagaaaaa gcaaagagtg ttccacattt
     1921 ataaattcaa ggagaaaatg atggcaaatc tttatttgat gagatctaga agtgatgagt
     1981 taaatactat tattagtaca aatttgctta aaaattatag caaaatttac aaaaatatcg
     2041 caatttattg ccctgtgata tacatacatc gcgttcctgt tttgcagggt tggttggaag
     2101 aatttaatat caatcaaacc gtaaaaagcg cttatggttt tacctttaga gaggcaatgg
     2161 aggaatttag caaagatcct cataattttt ttaatgttat tttagaagaa tacgaagagt
     2221 taaaacgcaa atacgatttt gtgcttgtaa atagtttttg cgaatttgga atacttgatg
     2281 gatttgatct tagtataaaa ttggctaaaa atcttaatac ccctatcgct gctattatta
     2341 acgatgaaga taaacttata gctcaaaaat attttgatca tgctctagat ggtcgtaatt
     2401 atgttttgat taatgaaaat tttaattttg aagaagtgca aaaacttaaa gaatatgatt
     2461 ttataactcc tcatcgtttt aaatatgaat taatcaaaca aagtataaaa aataaaaaaa
     2521 ccgttgtttt gccagaaagt aatgatgaga gaattttaaa agctgctgaa attttattaa
     2581 aaagtaaagt tgttgatctt attttattgg gcgatgaaga aaaaatcaaa caagatgcta
     2641 ctagattaag tcttgattta agtgctatgc aaattatgaa tccacttaat tcagaatata
     2701 atcaagaatt tacttctatt ctttatgaag caagaaaatc taaaggcatg agtttagaag
     2761 aggctaagat gctagttcag gataaaactt attttggaac tttgcttata catactggaa
     2821 aagctgatgc tatggttagt ggagcatcaa ctactacagc tgaaacgatt cgcccagcat
     2881 tacagcttat taaaaccaaa gaaggtatta gttccgtttc aggaattttc tttatggggc
     2941 ttgaagatca agttttagct tttgctgatt gtgctgtaaa tccaagtcca actgccgaac
     3001 agcttgcaac tagtgcttat gtaagtgcta tgactgctaa atcttttgga cttgaaccaa
     3061 gaatagcttt gctttcttat tctagtggcg atagtggtaa aggggaaagc gtagatcttg
     3121 taaaagaagc attaaagatt gctaaagaaa aataccctga gttaaatata gatggtccta
     3181 tgcagtttga ttgcgcttat gatccaaaga ctgcagcaaa gaaaatgcca aattctaaga
     3241 tagcaggcca tgcaaatgta tatatttttc ctgatcttaa cgcagcaaat atttgttaca
     3301 aagcagttca aagaactgct aatgctttag caatcggtcc tattttgcaa ggtcttaaaa
     3361 aacctgttaa tgatttaagt cgtggatgtt tggtagatga tattgtagat actgttattt
     3421 taagtgctat acaagctcaa tagaaaggaa taataaatga aaattttagt tttaaattca
     3481 ggttcttcat cgattaaatt taaatttttt gataataaag tcgttaaagc gagtggctta
     3541 gtagagaaaa ttggagagca aaattcaaag gttgtattaa aaaatacttt aaataatgaa
     3601 agttttgaaa gagaattaac aataaataat cacgaagaag gacttagtat agtcaacgag
     3661 ctttttaaag aatcaggaat tttagcagat ttaaatgctc ttgatggctg tggtcatcgt
     3721 atagttcacg ggggaagaaa tttaagtgag cattgtttag tagatgatta tgttcttaaa
     3781 gagatagata gggttagtat ttttgctcct ttgcataatc ctgcccattt agcaggtata
     3841 aaaacaatga tcaaagctgc acctagtgtt gctaatgcag ctatttttga tacagctttt
     3901 catcgcacta tgcctgattt tgcttatatg tatgctttgc cttatgattt ttatgataag
     3961 cataatatta gaagatatgg ttttcatgga acttctcatg cttatgttag ttctagagcg
     4021 gcaaaatttc ttcaaaaaga tcaaaatgaa ttaaatgtca tctctgctca tcttggaaat
     4081 ggtgcaagtg tatgtgctat agaaaaaggt aagagtatgg atacttctat gggctttact
     4141 ccacttgaag gacttattat gggaacgcgt tgtggagatt tagaccctgc tattttacct
     4201 tttgttagtc atcttaaggg tttaactata gaagaaatag atacactgat gaataaaaaa
     4261 agtggagtat atggaatttg cggttataat gattttagag atatagaaag agagatagaa
     4321 caaggtaatg ataaagcacg cttggctctt gatatgtttt gttatcgtct tgttaaatat
     4381 ataggatcct actttgctgt gttgccaaaa accgatgcta ttatttttac aggtggtata
     4441 ggagaaaatg atagtttggt tcgacaaaaa gtatgcgaga gattagctca tcttggtatc
     4501 gagttagatt ttgaacttaa caaacaaagg atttcgggcg aaagaatgat aaatcatgca
     4561 aattctaaac ttaaagtgct tgttattcct acagatgaag aattagaaat cgctagaatc
     4621 acagaagaac ttatcggtaa aaattaaatt ttaaaaacta tataaatctt tcatttatat
     4681 agtttttatc aaggttatat attcactttg cttttcgttt aaaaccttaa aagtgcttat
     4741 catgtaagaa aattcatcat cacttaaacc ataaagttct ttaaccaata aatcattttt
     4801 tgctcttaag atatcataag cttttttagt ttttggaatt tcttcatttt ttatattaaa
     4861 ttcttgtttt agctcatcaa aatgatgatt tttatcattg taaagctgta aaagcaaagc
     4921 atttttagcg agggttttat aaatttcatt gttttgaatt tcttcatcac ttggttgagg
     4981 cagaggaatt ctttctagat aggttttgct tacattgatt tgcaccatat ttcttatgat
     5041 aaaatcaacc actaaagaat taaacaaagc caaaacaaat aaaattcttt cataaggcac
     5101 tatatccatg caaattgcat catcttttac aatatattgt ttcggaatat tagaataaac
     5161 actatttccg cacccgcaat tttttggcaa taaagaagct atcaaggttc tttcatttgt
     5221 atcgcttgca atagttctat atccaagtct aaaaaattct ctatcgtatt ttatcaattt
     5281 aggatttaat tctttcccag tagctttttt agctcttgaa agttctttgc tttttaatcg
     5341 ctcgtcaaat ttagcctttt ctaaaaaata agtagcttgg ctaaaatttg tatcaaactg
     5401 atgtatcatt ttgccttcaa ataaaggcaa aagtccttcc ctaaactctt ctataaacaa
     5461 atctttatca tttgtcatat gaagttcatt tacaaaatct atataatcaa aagacaagtt
     5521 ttgaaaagca ttgtagcatt ttcttagaat ttctaaagcc tgtttgtctt ttaactccat
     5581 taaagctagg tgagttgggc ttagtttttt gatatctttt aaacttagag ttaaaatttc
     5641 atctttgttt tttaatgagt tcatatctgt tttataaaac atcgttttga ttttgtgagt
     5701 gtgatttgct tgtgtgtttt ttacttgcat aagagcaaat ttatagcttt tatgcacatc
     5761 agcaaatata gcttgtctat tttcaaaact ataaaaatat tctaaagttt tattttctaa
     5821 aatttctttt cttaaagtta agcttccatc ttcaaacatc aaagcactag gaagtacata
     5881 agctaaattt ccatcttgtt ttaaaagaga aagatttttt tctacaaaaa gacgaaataa
     5941 atttccatct ccactgcctt tgtttaaagg ataagctttt ttataatact cgcttaaatc
     6001 atttatatat gctttttgtt tttcataatt ttgctttata taatctttcg ctagcaaatt
     6061 gtcttgaatt tcttttttct tgctagcgat taagcttcta taatcgcttt tatattgcgg
     6121 aaagaaatca tcgtcactaa atttagtttt atcccaaggt ggattaccta tgatgatatc
     6181 aaagccttta aagacttgat tttctacgat ttcaggaaat tctaactcat agttaaagaa
     6241 attaaattct ttttgatatt tgctaatgac agcttttgct tgttcatttt ggcttaaatt
     6301 ttgtatatca tcttgactta gggcttttag aatttgtaat tcttctttgt tgacaaaatg
     6361 aagcgtgttg atatagttta gatataaatt tagtttctta agttttggtg tgatttcatt
     6421 ttgatagatt tgtttagatt gtttgatttg ttcttcgttg gtatctttta gattgtcaag
     6481 tttttcaaat acttcttgta aaatttcaaa ttcttgtgtt atggaatttg taaaaaggtt
     6541 gcttgagttt tgttttatca aatctttaaa atcacttagg ttagaattta tcaaagcatt
     6601 gccgcacttt atgtggtgtt ctataaaaga aagtggggtt gtaaagataa aactatctat
     6661 ccaaaggcta agtttagtaa gctctatgct aaaagggttt aaatccactc cataaataat
     6721 gcgttttagt aaaagtcgtt ttaaaatatc actctcatct acttcatagt cttgcacaaa
     6781 atcttttata tgatttaaaa tattttcttt ttcttcttcg taaagttctt ttaaatttgt
     6841 aaaatgatca aaatctgata aaacaatgtg tgtaatagcg tttaaaactc caactaaaaa
     6901 atgtccacta ccgcaagcat tgtctagtat tttaaatttc aaaatatttt cattgtttag
     6961 tttgtctttt aaagcacttt ggattaaaaa attagctatg gattgaggtg tgtaaaagct
     7021 tgcgcttgct tttcttgagt tgctagtatt tttaaggtaa atttgtcctt ttttgtaaaa
     7081 ggtgtatttt tctacttttt ttgatttttc taaaattttg aaatcataat tatcaaaata
     7141 acattctatt tcttttgatt tttctttata gcttacatag taaatatctt catttgctat
     7201 ttcaaaaaaa taagaaagca agccttcata aatcgtgcct aaatgttcta cacttaaagt
     7261 tttgtaatct cttttaaagc ttagattttt atctttaaaa tttaataatt ggtttaaaat
     7321 gaattttaaa tctttatcgt taaagatttt tggcgtgctt aaaagagcgg ttttgctctc
     7381 atcaaacaaa ccgccattaa aaacaggcat gtcaaaattg cctttgcctt tgttgtaaat
     7441 gttgaaaata ttttcaagtt ctccaaagcc accacttgag ctttcatctt cttgtaaatt
     7501 ttcaagtaag gttctaagac tgattttact tttaaaatac ttatgttttt ctagtataat
     7561 ttcaaattta tcttcaaaat aagcaataaa taaaagccta aagataaaat ataaagaatt
     7621 ttcatagatt agttttaaat ccgcctttgt tttattgtaa attctagagc ctatgaattc
     7681 aaataaagat tcatttccat tggttccgta aatgatagat tttaaatcat cttctatttt
     7741 gatttttgaa agtttattgt tttgtagagt tatttctaaa tgatcttctt tttctgtgaa
     7801 attaaaagcg ctaaatacac tataaaaata cgcaaaagct tcaatatttt gatcttcaat
     7861 gattttttct agattgattt cgtaaaaaac tttgtttgaa ttcagtatag aattatcata
     7921 aaaacgccaa aatctaccat tggttaaaaa accataattt ttcttaagat tgcctagata
     7981 tcttagaatt tgaaagtgag ggttgtcttt tactttttta ttgtctattt ctatattata
     8041 agcttttgac tctaaaatga ttgtgaaatc attgcttgat ttttttgttt ctttgtctaa
     8101 attttcgtat tttgatttta atttgtcatt gctaaaaagt agaaaatcag gtttttccaa
     8161 ttttccttgt atgatttttt catcttgtct tacaaagcac caccctaaaa tttctaatac
     8221 ttttgatata aattcatctt caaattgatg ttcgttttgt tttataaatt tatttttgtc
     8281 gtaaattttt gtaattttag ttaaaatatc tctaaaggct ttttgatttg cgttgaaatt
     8341 ataaatctta ggaaagtcaa tttctaaaga atagcttgta aaaagattat tgttgaggta
     8401 ttttttaagt tcttgatagt aattcatggc tttctttcta aagtattttt aaaaatttga
     8461 cattttaaat tatatctaaa aaactttaaa gacttgtgct tatttatgaa aatgattttt
     8521 tagttggaat taatt
//
LOCUS       DAQSLY010000068         8499 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.068, whole genome shotgun sequence.
ACCESSION   DAQSLY010000068 DAQSLY010000000
VERSION     DAQSLY010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8499
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.068"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..367
                     /locus_tag="R2H98_001204"
     CDS             <1..367
                     /locus_tag="R2H98_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024079.1"
                     /translation="YIKKENEKKMSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKD
                     MDLREFANSSSIFQIYIDQNRNDFDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDR
                     RQKQANINKILNSYMSVMV"
     gene            504..905
                     /locus_tag="R2H98_001205"
     CDS             504..905
                     /locus_tag="R2H98_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEE9024080.1"
                     /translation="MIYNEKIISMNNDLLDHQHKELFEISKKLSLMNQYHVGTKELKI
                     VLRELLIMINRHFSDEEAFMRKIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            1083..2264
                     /locus_tag="R2H98_001206"
     CDS             1083..2264
                     /locus_tag="R2H98_001206"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEE9024081.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIIVTSCATESINWVLKGVYFDHILDRERNEVVISSVEH
                     PAVATAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            2274..3245
                     /locus_tag="R2H98_001207"
     CDS             2274..3245
                     /locus_tag="R2H98_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEE9024082.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEMDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(3268..5151)
                     /locus_tag="R2H98_001208"
     CDS             complement(3268..5151)
                     /locus_tag="R2H98_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEE9024083.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANMSKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(5148..5783)
                     /locus_tag="R2H98_001209"
     CDS             complement(5148..5783)
                     /locus_tag="R2H98_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEE9024084.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            5944..6639
                     /locus_tag="R2H98_001210"
     CDS             5944..6639
                     /locus_tag="R2H98_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEE9024085.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            6743..7114
                     /gene="secG"
                     /locus_tag="R2H98_001211"
     CDS             6743..7114
                     /gene="secG"
                     /locus_tag="R2H98_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEE9024086.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            7124..7687
                     /gene="frr"
                     /locus_tag="R2H98_001212"
     CDS             7124..7687
                     /gene="frr"
                     /locus_tag="R2H98_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEE9024087.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKSKESELLKV"
     gene            7690..8298
                     /gene="pyrE"
                     /locus_tag="R2H98_001213"
     CDS             7690..8298
                     /gene="pyrE"
                     /locus_tag="R2H98_001213"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEE9024088.1"
                     /translation="MNLEQIYKGCGAYLEGHFLLSSGKHSQFYLQSAKVLENPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            8299..>8499
                     /locus_tag="R2H98_001214"
     CDS             8299..>8499
                     /locus_tag="R2H98_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEE9024089.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKK"
BASE COUNT         3099 a         1254 c         1316 g         2830 t
ORIGIN      
        1 ttacatcaaa aaagaaaatg aaaaaaagat gagttttgat ctttatcttt atgtgaatgg
       61 cgtagataaa aaaacaagta ctcaagataa actatctgta ttttttcaac aatatattaa
      121 ctaccaaaaa gatatggatt taagagaatt tgcaaattca agttcaatat ttcaaattta
      181 tatcgatcaa aatcgcaatg attttgatgc tcttaaaaaa caatatcaaa accaaagtca
      241 agatacgcaa agattagaag aagcaaatca actacgttct agctctatag aaaatttttt
      301 agatcgtcgt caaaaacaag caaatataaa taaaatttta aactcttata tgtctgtgat
      361 ggtttaaaat aattttttaa aaaatatata aattataaat actttaataa taataatttt
      421 tatataatta attaataaaa ttttaagtat tatagcatta taatccgttc tcgaaaaata
      481 taaatataaa agtactcaaa accatgattt ataatgaaaa aattatttca atgaataatg
      541 atcttttaga tcatcaacat aaagaacttt ttgaaatttc taaaaaactc tctttaatga
      601 accaatatca tgttggaaca aaagaattaa aaattgtctt aagagagttg ttgataatga
      661 tcaatagaca tttttcagat gaagaagcct ttatgagaaa aatagaatat ccttatatca
      721 accatcatac aagaattcac agaaaaatta tcttagaaat tgaagaaatt atcatcagtg
      781 aagctaaatt tgtaaatata atgaccgaaa aattaaatct cgttgttcaa gattttatct
      841 ttaaacatac agccaaagaa gattcaaaaa tagtaaagta ttacgaagaa aaatttaaga
      901 aatagtattt ctcatttttg ctatataaaa ttcacaaaat atttcacttt aaaattttac
      961 tttagcattt tatttttgtt ataattttta acctaatttt tataaatttt tgttattatc
     1021 cattttcaaa taaagataaa aaatatccta attaaaatta aggataaatt aaggatttta
     1081 aagtgaaagt atatttagat aacaacgcaa cgacaatgct tgatcctaat gcttatgagt
     1141 tgatgctacc ttttttaaag gatatgtatg gaaatccaaa tagccttcat caatatggta
     1201 gcgcaacaca tcctgcctta agagaagctt tggataaact ttatgcagga cttggagcaa
     1261 atgacctaga tgacataatt gtaacctcct gtgcgacaga aagcattaac tgggtgctta
     1321 agggtgtgta ttttgatcat attttagata gagagcgcaa tgaagtggtt atttctagtg
     1381 tagaacaccc tgctgttgct actgctgctt attttttaaa aagtcttgga gtaaaagtca
     1441 tagaacttcc tgtaaacgaa gaaggagttt ctactgtaga agatttgcgt aaagtgatta
     1501 gcgataaaac agcacttgta agtgttatgt gggcaaataa tgaaacaggt atgatttttg
     1561 atattaaagc gatggcagaa cttgcgcatg aatttggtgc tctttttcat acagatgcta
     1621 ctcaagcagt aggtaaaata aaggttaatt taactcaagt aggagttgat tttgcttcat
     1681 tttcggcaca taaatttcat ggaccaaagg gtgtgggtgg actttttata aaaaaaggac
     1741 ttaagcttac tccactttta cacggtggag aacacatggg tggtcgtaga agcgggactt
     1801 taaatgtgcc ttatatagtg gctatgggcg aggctttgcg tattgcaaat actatgcttg
     1861 attttgaaga ttctcatata cgccgtttaa gagataaact agaagatcaa attttagcct
     1921 tgcctgatac aacagtggtt ggaaaaagag aacaccgtgt gcctaataca atcttagcaa
     1981 gtattaaagg agttgaaggc gaagcaatgc tttgggattt aaataaaaat ggtatagctg
     2041 caagtacggg ctcagcctgt gcaagtgaag ctttagaaag caatcctatt atggaagcta
     2101 tcggtgcgga acatgattta gcacatacag ctttaaggct ttctttgtca cgttttaaca
     2161 ctgaagaaga aattgattat gcagcaaaac aaattaaaaa tgcaacacag agattaagag
     2221 caatttcttg tacttatgct tataatccaa ataattacaa ataaggatga aaaatgggaa
     2281 aaaatagttt aattggtgga tccatttggg atgagtattc acaaaaagtt caagatagaa
     2341 tgaataatcc tcaacatatg ggagaattta gtgaagaaga tgctaaagca cgcaatgcaa
     2401 aattgatcgt agctgatttt ggcgcagaaa gttgcggcga tgcagtaaga cttttttggc
     2461 ttgtagatga aaaaactgat aaaattatcg atgcaaaatt taaaagtttt ggttgtggta
     2521 cagctatagc aagtagtgat actatggtgg atctttgtat aggaaaaact gtagatgaag
     2581 cagtaaaaat cacaaattta gatgtggaat ttgctatgcg tgataatcca gaaactccag
     2641 ctgttccacc tcaaaaaatg cactgttcgg ttatggctta tgatgtaatc aaacaagcag
     2701 cagcgcatta taaaggcata agtcctgaag attttgaaga tcagattata gtttgcgagt
     2761 gtgctagggt aagtcttgga actattaaag aggtgattaa acttaatgat ttgcatagcg
     2821 tagaagaaat cacacaatat actaaagcgg gtgctttttg caaatcctgt atcaaaccag
     2881 gcggacatga aaaaagagat tattaccttg tagatatttt agctgaaact agagctgaga
     2941 tggatagaga aaaactcaaa aatacaatga aaagtgatgt ggcttttgat gaaatgactg
     3001 tagtaggaca attaaaagca gttgaaagtg ttttagatgc tgaaattcgc cctatgcttc
     3061 ataatgatgg aggggattta gaagtgattg acatacaaaa ggctgaaggt gcagcaattg
     3121 atgtttatat tcgttatctt ggtgcttgta gtggttgttc tagtggaagt ggtgcaacac
     3181 tttatgctat tgaaacgatt ttacaagaag aattaagccc aaatatacgc gttatgccgg
     3241 tttaaaaaat agcaagataa aatcttacta ttttatagct tttgcttgca aatcaagggg
     3301 tggtaaattt tctatataaa tactacgact tgggaaagca aaggttaaac catttttttc
     3361 aattatacgc ataaactcaa gcattaaact ttgtctagct tctctaaaat cttttccacc
     3421 tatttctttg atataaaaat aaagctctat attaatacta ctatctgcaa attcacttaa
     3481 agccacataa caagcatttt tatagccttc taaatcatta atagatacaa gattttgacg
     3541 atattttgtt gtatgatcgc catattttaa tgcgctatcc tcatcgtgag ctactaaatc
     3601 acttgtatgc aaaaattctc ttagatcttt tacacattgt tctagttttt caggagtagc
     3661 atcataacca acacccaaat acattctaac atggcgaccc atgcgtcttt tgctccaatt
     3721 tttgatatta gctcccataa tagttgaatt tggtaaaaat acaagacaat tatcaaaagt
     3781 tctaatagta gtttttctaa gtcctgtttc aaccacggtt ccttctatgc ctgaaacctc
     3841 tacccaatct ccttgattaa agctattatc aaaaagtaag agtatagaag caaagaaatt
     3901 tgcaatgata tctttcgccg ctaaagcaac agctaaacca ccaattccca aagatgcaat
     3961 aatagccgaa atattaaaac caagttgagc aagaatatat aataaagcta taataataat
     4021 gacaaaatat aaaattttaa taattaaatt tacaacttct ttttttccac ttttttgagc
     4081 aagtttagaa accaatacca cgccataacc atcaagcatt cttaaaataa gccatgcaat
     4141 taaaactgca taaactatat gaaaaaaatt acttaaattt acactcaaag gtgcaggata
     4201 agttgctata gtaagacaaa gagaaatagc atagacaatc aacaagaagc ctacgggttt
     4261 tttaatattc tcaataaaaa tgactttaat atcatctaca tcatttttat ttctataaaa
     4321 aaactgaaca aggaaaaaat atactatatt tgcaaaaaaa cgtcttaaag atataaaaaa
     4381 tactaaaacc aaagcagaaa ttactatttt tccgatatta acaaaactta ccccaattgc
     4441 ctcatttata cgatctatcc aaacttgaag ctcgagtaat gaaaaaatat aattactttc
     4501 aagcaaatct gcatttgagc gtaaatactt aagaatttca gaataagaat ctacagcatt
     4561 actgatatat ctttctttta gggtaatttt ttctaattct tctgaatttg taattttgct
     4621 tttaaaacta tctaaattaa cattagaaga attttgtaaa ttttccattg ccttatcaac
     4681 agtagcaatc aaatcttcac tgcttgctgt atttttaaaa agtttttcca cttcaaacaa
     4741 agaagaataa aaactttcca caatattaaa ataaactaga ttaagagtgg catctgtata
     4801 aatataaggc ttattaatat tctttttttg aacatctagt aatttttctt ttgcttttaa
     4861 aaatctagcc actgcctctt cattaatctt ttgtcctact atcatatcgg gtatttttgc
     4921 taaaatagtc tttttgtctt tttcaaattc acttaaaata ccattaaaag tgcttgaatt
     4981 ttcatcattg tttttcttaa attctttaat ttgattgtta agatcaacat atttttcaac
     5041 taaagcataa attccttcat cctctttact catatttgca tcaataaatt taaattcttg
     5101 tgctccaagg tataaaataa aaaaacataa actaaaaata atttttttca ttgaactttc
     5161 ctatcctgta ttaaagtaaa aatttttgct ttaaaatcat actcataaat ttcacctgtc
     5221 tctataatat aataccaagc atgtacttct atttttcctt catctaaagc ttcttgcacg
     5281 cctggataag taagtatatt ttgcaaagaa tttactaaat ttaatttttc tgtaagccat
     5341 gaacgcatag ccaaatcgtc tcttgcaaaa atcattacat ctttttttat cggatctaac
     5401 atagtaagcc attttttcac attaggaatt ttatttaact cttcatcaga ataataaaga
     5461 gcattgcaac ctccacaatt actatggcca caaacgacga tatttttaat atgcaatgaa
     5521 tttaaagcat actctattgc tgaagttgtc gctaagtaat cttccccaat gcgataaggt
     5581 ggaactatat ttgcaatatt tcgtattaca aaaagctcac ctggacccgt attggtgatc
     5641 aaatttggaa ttactctaga atcagaacaa cctataaaaa gagtatgggg attttgctta
     5701 ttttttagac tttcaaaaag ttcttcatgc tccttaaagt cttcttgcat aaacttaatc
     5761 gcaccactaa taagattttc cataaaacca acctgaaact aaaatcttga aattataaca
     5821 aaatttcagc aaagatttca tttaatcata aagatattat ataaattaac tttttattta
     5881 gtctaatatg ttagatttcg ctcaagattt taaaaaatct aacaattttg caaggagaat
     5941 tttatgagtc tttatgatag agactactca agatcaaaag aatttgaaaa tacacgctca
     6001 agcgaattaa gtatttttat taaacaaact tatcaacttt ttgctgcttc attattagct
     6061 gcaacagtag gtgcgtatgt aggaattttt gctttagcat cattttttat acaatcacaa
     6121 gtaacttttt ggatcctttt tgctgttgaa atcggacttt tatttgcttt gcaatggaaa
     6181 aaaagagagg ctccattaaa tcttgttttg ctttttggtt ttactttctg ctcaggttta
     6241 acgcttacac ctttgcttat ttcagtgtta gctctaccag ctggaggaat tatcatcgct
     6301 caagcttttg ctttaacaac agttgctttt gcaggactta gtgtatttgc tatgaataca
     6361 aaaaaagatt ttactgttat gggtaaagct ttatttatag tattaatcgt tattgtagca
     6421 gcatctttac taaacctttt cttccaaagc agtatagtta atctagctat ttcagcagta
     6481 gctgcaatat tattttcatt ttacattctt tatgatacgc aaaatattat ccgcggaaat
     6541 tatgaaactc caatcgaagg tgcagtagca ctttatcttg attttgttaa tcttttcgta
     6601 tctttactta atatcttaag aagcttcaat agcagataaa tttttgtggg atttttctca
     6661 caaaaacttt tcaagtttca aaacttttca agttttattt agctaaaata atcatttaaa
     6721 aattaacttt taggaatttt caatgatcac tcttttaatc attttacaat ttatcatcgt
     6781 tgtagttatt tgtatagcag ttttacttca aaaaagttca agtataggac ttggagctta
     6841 tagtggaagc aatgaaagtt tatttggcgc caaaggacca gctggatttt tggcaaaatt
     6901 tacctttgtt atgggaattt tacttattgc aaatactatt ggtcttggtt atttatacaa
     6961 taaagctagc aaagactctc tagcagagaa aattaaagta gaaaacaaca atactactat
     7021 tccaagtgct cctattgtgc ctgctacccc aaacacaaat tctatcgctc caagtgcacc
     7081 acaacttcca agcgatgtta attcaagtaa ataatcaaag gaaatgataa tgctaaatga
     7141 aatttttaac aaacaaaaaa cccaaagtga aaaatcttta gaagccttaa aaaaagactt
     7201 caccacttta agaactggaa aagttaatac ccatatttta gatcatatta cagtggatta
     7261 ttatggaact caaactcctt taaatcaagt agcaactgtt ttagcaagtg atgcttcaac
     7321 tattagcatc actccttggg aaaaaccttt actaaaaacc atagaaagcg ctattgcagc
     7381 tgcaaatatc ggtgtaaatc caaacaatga cggcgaaagt gtaaaattat ttttccctcc
     7441 gatgactaga gagcaaagag aagaaaatgt aaaacaagct aaagctatgg gtgaaaaggc
     7501 aaaagtttct ataagaaata tacgcaaaga tgccaacgat gcagttaaaa aactagaaaa
     7561 agataaggca ataagcgaag atgaagcaaa aaaagcttat gatgaagtgc aaaaacttac
     7621 cgacacctat acaacaaaaa ttgatgagag tgtaaaaagt aaagaaagtg aacttttaaa
     7681 ggtttaacga tgaatttaga gcaaatttat aaaggttgtg gtgcttattt agaagggcat
     7741 tttttactaa gttcaggtaa acattcgcaa ttttatcttc aaagtgcaaa agttttagag
     7801 aatccaaaat tagcagcaaa actttgtgat gaacttgcaa agattattgc aagctataag
     7861 atagaatttg atagcatttg ttctcctgct ttaggtggaa ttttagcagg ttatgagctt
     7921 gcgagagctt gtagtaaacg ttttatcttc actgaaagag taaataaaga aatgacttta
     7981 agacgtggtt ttgaggtgaa aaagggtgaa aaatttataa tttgtgaaga tatcattact
     8041 acaggtggta gtgctttaga gagtgcaaaa atcattgaaa gtttaggtgg cattgttgta
     8101 ggttttgcag cattggcaaa tcgtggtttt tgtgcagtag aaaatttaaa atctccaaga
     8161 aaagataatg cgaaattacc tgaaaattta ccactcttta ctctaggaaa ttttgaattt
     8221 gaaatttatg atgaaacaaa ttgtccactt tgtaaaaaag ggagtaaagc tataaaacca
     8281 ggaagccgtg gaaattaaat gaaaactaaa gcaaaaatta gctctagatg gctaagattt
     8341 agagctttgc ttatagatat ttttcttatt tatgttccta ttttgtattt attttatttt
     8401 ctattaggct ctaaagaagc ttttttaaac aaccatttta tcacaacttt atgtactttt
     8461 ttatttggtt tgattcaagc tattttttta acaaaaaag
//
LOCUS       DAQSLY010000069         8471 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.069, whole genome shotgun sequence.
ACCESSION   DAQSLY010000069 DAQSLY010000000
VERSION     DAQSLY010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8471
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.069"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..217
                     /locus_tag="R2H98_001215"
     CDS             <1..217
                     /locus_tag="R2H98_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024090.1"
                     /translation="SFNGEIKQLDLLALKDEEVFIIDYKTGLAMQDKHKEQVGTYKIA
                     ISEILQKDKVRAFIVYCLENEIQILEI"
     gene            301..726
                     /gene="rplM"
                     /locus_tag="R2H98_001216"
     CDS             301..726
                     /gene="rplM"
                     /locus_tag="R2H98_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEE9024091.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            729..1118
                     /gene="rpsI"
                     /locus_tag="R2H98_001217"
     CDS             729..1118
                     /gene="rpsI"
                     /locus_tag="R2H98_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEE9024092.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDDDFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            1243..2202
                     /gene="cadF"
                     /locus_tag="R2H98_001218"
     CDS             1243..2202
                     /gene="cadF"
                     /locus_tag="R2H98_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEE9024093.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGVRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGTGVKFCLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            2202..2843
                     /locus_tag="R2H98_001219"
     CDS             2202..2843
                     /locus_tag="R2H98_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEE9024094.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLTYREIYTQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKSRSMVFLNAYEAVNYIARLN"
     gene            2935..6495
                     /gene="nifJ"
                     /locus_tag="R2H98_001220"
     CDS             2935..6495
                     /gene="nifJ"
                     /locus_tag="R2H98_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEE9024095.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            6519..6830
                     /locus_tag="R2H98_001221"
     CDS             6519..6830
                     /locus_tag="R2H98_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEE9024096.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            6808..8220
                     /gene="mshL"
                     /locus_tag="R2H98_001222"
     CDS             6808..8220
                     /gene="mshL"
                     /locus_tag="R2H98_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEE9024097.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            8213..>8471
                     /locus_tag="R2H98_001223"
     CDS             8213..>8471
                     /locus_tag="R2H98_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024098.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYD"
BASE COUNT         3040 a         1132 c         1578 g         2721 t
ORIGIN      
        1 gagttttaat ggagaaatta aacaattaga cttgcttgct ttaaaagatg aagaagtttt
       61 tataattgat tataaaacag gtcttgctat gcaagataaa cataaagagc aggtaggaac
      121 ttataagatc gccattagtg aaattttgca aaaagataaa gtgcgtgctt ttatagttta
      181 ttgtttggaa aatgaaattc aaattttgga aatataaact ttatttttac ttaaattaag
      241 taaaaattaa tattattttt tatacaatca cattttaaat ttttggcaaa ggtaaaaatt
      301 atgacaaaga taacaaagcc aaacgaagta aaacgagaat ggattgtttt agacgcagaa
      361 ggcaaacgct ttggtcgtct tttaactgaa gtagcaacaa ttttgagagg taaaaacaaa
      421 ccttgcttta ctccaaatgt tgattgtggt gattatgtaa ttatcatcaa tgcttcaaaa
      481 gctgtattta caggtgctaa taaagcagaa gataagcttt atcatagaca ttcaggatat
      541 tttggaagtg taaaaagcga aaaatttggt gatttacttg aaaaaaatcc tgcaaaatta
      601 tataaattag cagttagagg tatgcttcct aaaacaaatt tgggcagagc tatgcttaaa
      661 aaattaaaaa tctatgcggg tagtgagcac ccacacactg cacaaattgc taaagaagga
      721 aaataatcat ggcaacaaca tacgcaacag gtaagagaaa aactgctatc gcaaaggtat
      781 gggtaaaacc aggtagtggt aaaattagtg ttaatggtgt tgatttaaac acttggcttg
      841 gtggacacga ggcgattaag cttaaagtgg ttcaaccttt acttgtgact aaacaagaaa
      901 cttcaatgga tattaaagca accactttag gcgggggcta tagtgctcaa gctgaagctt
      961 taagacatgg aatttcaaga gctttagcag ctatggatga tgattttaga gccttattaa
     1021 aacctaaagg acttcttact agagatagta gaactgttga gcgtaaaaaa tatggacgcc
     1081 gcaaagcaag aagaagccca caattctcta aacgttaata tttttggtgg gattttccca
     1141 cctttctaca attttttata aaactcatcc ttttttctat catttatgtt ataattgcaa
     1201 aatttaaatt tttattttat aacacaatga aaggtttttt ctatgaaaaa aatattctta
     1261 tgtttaggtt tggcaagtgt tttatttggt gctgataaca atgtaaaatt tgaaatcact
     1321 ccaactttaa actataatta ctttgaaggt aatttagata tggataatcg ttatgcacca
     1381 ggtgttagac ttggttatca ttttgacgat ttttggcttg atcaattaga atttgggtta
     1441 gagcattatt ctgatgttaa atatacaaat acaaataaaa ctacagatat tacaagaact
     1501 tatttgagtg ctattaaagg tattgatgta ggtgagaaat tttatttcta tggtttagca
     1561 ggtggaggat atgaggattt ttcaaatgct gcttatgata ataaaagcgg tggatttgga
     1621 cattatggca cgggtgtaaa attctgtctt agtgattctt tggctttaag acttgaaact
     1681 agagatcaaa ttaattttaa tcatgcaaac cataattggg tttcaacttt aggtattagt
     1741 tttggttttg gtggcaaaaa ggaaaaagct gtagaagaag ttgctgatac tcgtccagct
     1801 ccacaagcaa aatgtcctgt tgaaccaaga gaaggtgctt tgttagatga aaatggttgc
     1861 gaaaaaacta tttctttgga aggtcatttt ggttttgata aaactactat aaatccaact
     1921 tttcaagaaa aaatcaaaga aattgcaaaa gttttagatg aaaatgaaag atatgatact
     1981 attcttgaag gacatacaga taatattggt tcaagagctt ataatcaaaa gctttctgaa
     2041 agacgtgcta aaagtgttgc taatgaactt gaaaaatatg gtgtagaaaa aagtcgcatc
     2101 aaaacagtag gttatggtca agataatcct cgctcaagca atgacactaa agaaggtaga
     2161 gcggataata gaagagtgga tgctaaattt attttaagat aatgaataaa actattttat
     2221 ttgatttaga tggcacttta attgattcta ctgatgctat tttaaattct ttccaaggag
     2281 cttttaaagc ccttggatta acttctaaaa ataatgaaga aatcaaaaat ctcataggtt
     2341 atcctttaga gcaaatgttt agaatgcttt atccagataa agtaaattta agtaaagaat
     2401 ttgtattaac ttatcgtgaa atttatacac aaatttattt agaacaaacc actcttttgc
     2461 ctaaagcaaa agaggcatta gaacttggaa gcgaaattgc agatcttggt atagttacaa
     2521 caaaaggtgg taaatttact ccgattttac ttgattattt gggagttaaa aaattcttta
     2581 aaactttaat tactcttgaa gatgtcacaa atccaaagcc aagttccgaa cctataattt
     2641 tagccttaaa aagactcaat aaaactcaag aaaatgccta tatgataggc gatacaatac
     2701 tagatattca agctgcaatt tctgctaata tcactccttt ggccttaact tgtggctatg
     2761 gtaatgaaaa tgaattaaaa tcccgttcta tggtattttt aaatgcatat gaggctgtta
     2821 attatatagc tagattaaac taatttcaag ttttcgttaa acgcctttta agagaattta
     2881 tagtaaattg atagctaaaa aatataaaaa ttatcaatat aaaggaaggt ctcaatgggt
     2941 aaaattatga aaactatgga cggaaatgag gctgctgcat acgctgcgta tgcttttact
     3001 gaagttgctg gaatttatcc tattacacct agttctccta tggctgatta taccgatatg
     3061 tgggcagctg caggaaaaaa aaatcttttt ggagttcctg taaaaatcgt agaaatgcaa
     3121 agtgaagcag gagctgcagg tagtgtgcat ggatctttac aagctggggc tttgactaca
     3181 acttatacgg cttctcaagg attactcctt aaaattccaa atatgtataa aatagcaggt
     3241 caattactcc cctgtgtaat ccatgtagca gcgcgttctt tggctgctca agctttgtct
     3301 atctttggtg atcatcaaga tatttatgca gcaagacaaa ttggttttgc tatgctttgt
     3361 tcgcattctg tgcaagaaac catggactta gctggtgtag cacatttagc tgcaattaag
     3421 ggaagagtgc catttttaca tttttttgat ggttttagaa caagccatga aattcaaaaa
     3481 gttgaagtaa tggattatgc gcattttgat agattattag atagagaagc tttgcttgaa
     3541 tttagaaata atgctttaaa tccagaaaat ccaaaaacac gtggaacagc acaaaatgat
     3601 gatatttatt ttcaaactag agaagtaagc aatcgttttt acgatgcttt acctgatgtt
     3661 gttaatgaat atatgcaaga aatttcaaaa attacaggta gagaatacaa accatttact
     3721 tattatggcc acaaagagcc agagtgtgtg attgttgcta tgggttctgt aactcaagca
     3781 cttgaagaag tggtggacta tcttaatgcc aagggtgaaa aggtagggat tttaaaagtt
     3841 tatctttatc gcccatttag tttaaaatat ttctttgatg ttatgccaaa atcagtgaaa
     3901 aaaatcgcgg ttttagatag aaccaaagaa ccaggaagtc tcggagaacc actttatctc
     3961 gatgtaaaat cagctttcta tggaagagaa aatgctcctg ttatagtggg tggaagatac
     4021 ggactttctt caaaggatgt tgatcctgct caaatgatag cagtatttga aaatcttaaa
     4081 cttgataatc caaaagatgg ctttactgta ggtataattg atgatgtaac tcatacttca
     4141 ctgagtactg gagagaaaat ttcacttgga gatgaaagta cgatcgaatg tttattttac
     4201 ggacttggtg ctgatggaac tgtgggcgca aataaaaact cgattaaaat catcggagat
     4261 aaaacggatt tttacgctca agcttatttt gcttatgatt ctaaaaaatc agggggttat
     4321 acaagaagcc atttaagatt ttctaaaaaa cctatccgtt caacttatct tgtttcaact
     4381 ccgcatttta tcgcttgttc ggtagcggct tatttggaaa tttatgatgt tttagcagga
     4441 attcgcaaag gaggaacttt ccttttaaat agtatttgga atgctgaaga aaccataaga
     4501 caacttccag atgcagtaaa gaaaacttta gctgaaaaag aagtaaattt ttatatcatc
     4561 aatgcaacta aactagctcg tgatataggt ttgggaaatc gtacaaatac cattatgcaa
     4621 tcagcctttt tcaaacttgc aaaaatcatt ccttatgaag acgcacaaaa atacatgaaa
     4681 gagcttgcgt ataaatctta tagtaaaaaa ggcgatgcta ttgtagaaat gaattacaag
     4741 gctattgatg tgggtgctga tggacttgta aaagttgaag tggatccaaa ttggaaaaat
     4801 ttagagctta aagaaaaaga acaaaccaat gcctataaag gtactgaatt tgttgaaaaa
     4861 atcgtaaaac ctatgaatgc ggctaagggt gatgatttac ctgtttcagc ctttttaggt
     4921 tatgaagatg gaagttttga acacggcaca accgaatacg aaaaacgcgg tgttggggtt
     4981 atggtaccaa gatggataga ggcaaattgt atccaatgta atcaatgtgc ttcagtttgt
     5041 ccgcatgctg ttatcaggcc atttttgatc aatgatgaag aaatggcaaa tgcacctcgc
     5101 ggtgtaaaag atcatgcttt agaagctaaa ggaaccaaag gagaaaaatt aagctttaaa
     5161 attcaagttt ctccacttga ttgcacaggc tgtgagcttt gtgttcatga gtgtcctact
     5221 aaagaaaaat ctttggttat ggtaccactt caagaagaga tggattttgg tgagcaagaa
     5281 aatgcggatt atttatttaa agaaatcaca tacaaagatg atattttaaa taaagaaact
     5341 acaaaaggag cgcaatttgc ccaaccttta tttgaattcc atggagcttg tcctggatgt
     5401 ggagaaactc cttatattac tttaattaca agattgttcg gtgaaagaat gattgtggct
     5461 aatgcgacag gttgtagttc tatttatggg ggttcagctc catcaactcc ttatagaaaa
     5521 agtgtgaaaa atggacacgg tcctgcttgg ggaaattcac tttttgaaga caatgctgag
     5581 tttggtttgg gtatgaaaat tgcaactgaa aatacaagac accgcattga acatatcatg
     5641 aatgaaagta tgcaagaagt tccaaatgct ttatcagctc tttttaaaga ttggattgca
     5701 aataaagaca atggtgctat gtctgtggaa attaaagata aaatgatccc tattttagag
     5761 caaaataaaa atattaaagc cgtacaagat atattagagc ttaaacagta tttaagtaaa
     5821 aaatctcact ggatttttgg tggtgatggt tgggcttatg atataggcta tggcggactt
     5881 gatcatgttt tagcaagtgg agaaaatgta aatattttag tgcttgatac agaagtttat
     5941 tctaatacag gcggtcaaag ttcaaaatct tctagaacag gagctgtagc acagtttgca
     6001 gcagcaggca aacctataca gaaaaaagat ctaggtcaaa ttgctatgac ttatggttat
     6061 atttttgtag cacaagtaaa ttcaacggca aattatactc atcttatcaa agctatcact
     6121 gcagctgagg cctatgatgg accatctttg gtgatttgtt attctccttg tatagctcat
     6181 ggtattaaag gtgggctggg ttactcagga gagcaaggtg agcttgctac aaaatgtggt
     6241 tattggccac tttatacctt tgatcctcgt ttagaagagc aaggaaaaaa tcctttaact
     6301 ctaacaggaa aagaacctga ttgggattta tatgagcaat ttttgatgaa tgaagtgcgt
     6361 tataattcac ttaaaaaagc aaatcctgaa cacgctgctg agctttttga acgcaataaa
     6421 aaagacgctc aacgtcgcta tagacagctt aagcgtatcg ctatggctga ttatagcaat
     6481 gaggtcgaaa gctgataaaa tatattttta gtgctacatt gtgttttagc actttgtttg
     6541 cacaagataa ttttgaagag tattttaaac ttatagataa agaaaatcgt ataaatttta
     6601 atactcttca aaacccattt gtgaatccta cttttgaaaa attaagacat attaaaatta
     6661 ctgcaattat gcttgataaa gtaaaaattt atgatcgatg gtataaaaaa ggtgatatga
     6721 ttgatgatgc tataatatat gaaataaata ctaaagagat taaattccaa tatgataatt
     6781 tagaaattgc aatccaaata aataaaaatg ataagattaa tattaattaa cattcttttt
     6841 tgccattatc tttatgcttt agattgtcaa aagcgtcttt ttgatatcag tattaatgaa
     6901 aaattaagca tacaagaaag tcttgatgag cttgcaaaat attgttcttt tagtattatt
     6961 gttaaagata aaattgccaa agaaaaatta gaaatattgc aaaactctgt caatattcat
     7021 caaatgagtt tagacgaaat ttttaatttt tttatcaaag agcatgatct tagctatgat
     7081 tttgatggta aaattttaag aatttcaggc attaatacga agatttttaa gataagttat
     7141 atcacttcta tcagagaagg acaaagcata actaaagcgt ctgtagacgc taaaccaagg
     7201 caaagtgaat atagcggtag ttttgatgac gcagaggaca atatgattaa aagtatggaa
     7261 aaatttgatt tttggcaaaa tatagaaaaa gagattattg tattattaaa aaattctcat
     7321 gaagattatg aggctaaaac tcccattata aatcccaatg caggtcttat tatagtaact
     7381 ggaacaaatt ctcagttaaa aagtgtgaaa aattatttgc aaaaactaga aaatcgtctt
     7441 aaaaaacaag ttattatcga tgttagcata cttgctgtga gtttaaatga aaaccattct
     7501 agtgggatta attggcaaaa ttttaatata ggtttaaatt cgcaagtaaa taatgaaaat
     7561 tcttttattc agtttcaaaa tgggcaaggt tttgttaaga atttgggttt aagggcgaat
     7621 ttaaattttg attctattat taactttctt tctcaaaatg gaaaaactag cgtgctttct
     7681 aatccaaagc ttatggcttt aaataaccaa caagccatta tttctgtagg tgatactata
     7741 aattatcaag ttaaagaaag ttctaaaggc actgaaaatg ggactactgt tagtgaaagt
     7801 tataacaatt attctatttt tgtaggcatt ttactcaata tcttgcctga aatttctgat
     7861 gatggaaaaa taatgctcag gattaatcca agcttaagtg attttaagta tccagaagat
     7921 aataaacgac aaaaagaacc aagaactatt gctcctgata ccatacaaaa aaagctttct
     7981 agtgttgtgc aagtagagaa taatcaaact ttaattttag gtggattgat ttctcacgat
     8041 aaatctaatg agaaaaattc tatcaatttt ctatcaaaaa ttccaatcct aggttctttg
     8101 tttaaaggag aagttttaaa ttctaaagca actgaaattg tttttattat cactccaagt
     8161 atagtagata gtgtaaatgc tccaagtctt aaagatctag gatttaagca ttatgagtaa
     8221 aattattcca tttagagaag aaatttttca tcaaatcaat caaattttag aaagccaaaa
     8281 agcttttatt tttttatggg gaaaaagtgg tagtggtaaa agtgtattgt tgcaaagatt
     8341 ggcaaaaaaa tataatgttg attttattaa tgaaaatttt aaagatcaga gtttcttaaa
     8401 agaaaaaatt gagtttttga tttcacaagg tcagagttta atcattcttg atgaagtggg
     8461 aatgtatgat t
//
LOCUS       DAQSLY010000070         8077 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.070, whole genome shotgun sequence.
ACCESSION   DAQSLY010000070 DAQSLY010000000
VERSION     DAQSLY010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8077
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.070"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1504
                     /gene="pheT"
                     /locus_tag="R2H98_001224"
     CDS             <1..1504
                     /gene="pheT"
                     /locus_tag="R2H98_001224"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEE9024099.1"
                     /translation="SFSEKDEEFTINLSKQVHGETKVSCKDKLLSFSGIFQNNESRCK
                     DDSKIIIIEANYTDPLVIADAKIYYKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQI
                     PNLVIYSSSQQILTDKELPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEG
                     LINVKAPLHRPDIKNLSDICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNL
                     RKRAVASGYFESLHYVLDNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAA
                     SLNAKNSKKIIKLFELGAVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFL
                     LDIKNIIGDFKLKSSKYNILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICE
                     LDLDLIRQDFKIAKPYSKFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVD
                     IYSDENLKEFYSITISFSFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            1501..2787
                     /gene="aroA"
                     /locus_tag="R2H98_001225"
     CDS             1501..2787
                     /gene="aroA"
                     /locus_tag="R2H98_001225"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEE9024100.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            2777..3607
                     /locus_tag="R2H98_001226"
     CDS             2777..3607
                     /locus_tag="R2H98_001226"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEE9024101.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIKKFKN
                     "
     gene            3743..5413
                     /locus_tag="R2H98_001227"
     CDS             3743..5413
                     /locus_tag="R2H98_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEE9024102.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQDDNSKLLFNVGDGIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELNSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            5413..5901
                     /locus_tag="R2H98_001228"
     CDS             5413..5901
                     /locus_tag="R2H98_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024103.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            5898..7481
                     /locus_tag="R2H98_001229"
     CDS             5898..7481
                     /locus_tag="R2H98_001229"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEE9024104.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKVPKDELMQMLSD
                     VEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMVIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            7468..>8077
                     /locus_tag="R2H98_001230"
     CDS             7468..>8077
                     /locus_tag="R2H98_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEE9024105.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLANYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFP"
BASE COUNT         3092 a          957 c         1441 g         2587 t
ORIGIN      
        1 tagtttttct gaaaaagatg aagaatttac cattaattta agcaagcaag tgcatggaga
       61 aacaaaagta tcttgcaaag ataaactttt aagctttagc ggaattttcc aaaataatga
      121 aagtagatgt aaagatgatt ctaaaataat tattattgag gctaattata ccgatccatt
      181 ggtaattgca gatgctaaaa tatattataa agatcaagat gaaaaaatgc tttatagaag
      241 ttttagggga agtgaaccta aattaaattt aggaatggat tttttgcttg gtatttttga
      301 gcagattcca aatcttgtta tttatagttc ttctcaacaa attttaactg acaaagaatt
      361 accaatcata ccaataagta ttgaaggtat tagcgatata ataggacaaa atgttgataa
      421 agatgaagta ttaaaaatat taaagaaatt aggttttgag ctcatacttt caggtgaagg
      481 gcttataaat gttaaagcac ctttacatcg tcctgatatt aaaaatttat cagatatttg
      541 cgaggaagtt gtaagaatta taggtattga taatattgct tccaagggtt tagaatttat
      601 agaaaaaaat cgtttaaatt ctgcatataa aaattatatt gagtttttaa atttaagaaa
      661 aagagcagta gctagtggtt attttgaaag cttacattat gttttggata atggagaaga
      721 acttaaaaga ttaggttttg actctgttaa attaaaacta atcaatccaa ttacagcaga
      781 acttaatact ttaagaacaa cccttttaaa tcatttgtta aatgcagcaa gtttaaatgc
      841 aaaaaattct aaaaaaatta ttaaactttt tgaattaggg gctgttttca atgttaataa
      901 tcaagaatta aatcgtattg catttatcca ttctggctta aaagaagaag ctaaaatttc
      961 caacaaggcc aaacctgaat cggtgcaatt ttatgatttt cttttagata ttaaaaatat
     1021 tataggtgat tttaaactaa aatcatcaaa atataatatt ttaagccctt atgaacaagc
     1081 agatatttat ctatcggata ttaaagtagg ttttataggc cgtttgcatt taaaaataga
     1141 aaatgagaga gatttaccaa aaacatatat ttgcgaactt gatttagatt taatcaggca
     1201 agattttaaa atagctaagc cttactccaa attcccagct atcactagag atcttagcgt
     1261 gttaatacct aaaggttttg aatacaatca gattaaaaat tgtatcgaag aattgaattt
     1321 agaaatactt gaaaattttc gtttagttga tatttatagt gatgaaaacc ttaaagaatt
     1381 ttatagcatt actataagtt tttcttttag ggatataaat aaaactctag aagataatca
     1441 agtgaatgaa tgtatggata aaattttaaa tactcttaaa aatttgggtc ttgatttaag
     1501 atgaaaattt acaaattgca aacccctgta aatgctatac ttgaaaatat agcagcagat
     1561 aaaagcatat ctcatcgttt tgctatattt tcgcttttaa cacaagaaga aaataaggct
     1621 caaaattatc tcttagctca agatacttta aacactcttg aaattataaa aaatcttgga
     1681 gctaaaattg aacaaaaaga ttcttgcgtc aaaattatac cccctaaaga aattttatct
     1741 ccaaattgta ttttagactg tggaaattca ggaactgcta tgcgtttgat gataggattt
     1801 ttagcaggaa tttctggttt ttttgtttta agtggagata agtatttaaa caatcgtcct
     1861 atgagaagga taagcaaacc acttactcaa ataggcgcta gaatttatgg aagaaatgag
     1921 gcaaatttag ctccactttg tatagaaggt caaaaattaa aagcttttaa ttttaaaagc
     1981 gaaatttctt cggctcaagt taaaacagct atgattttat ctgcttttag agctgataat
     2041 gtatgcactt ttagtgaaat ttctcttagt cgaaatcata gtgaaaacat gctaaaggct
     2101 atgaaagctc caataagggt tagtaatgat ggcttaagtc ttgaaataaa tcctttaaaa
     2161 aaacctttaa aagctcaaaa tataatcatt cctaatgatc cttcttcggc tttttatttt
     2221 gttttagcag ctattatttt acctaaatct caaattattt taaaaaatat tttgcttaat
     2281 cctactcgta tagaggcgta taaaattttg caaaaaatgg gtgccaaact tgaaatgaca
     2341 ataactcaaa atgattttga aactattggt gagatcaggg tggagtctag caagcttaat
     2401 ggcatagaag ttaaagataa tatcgcttgg ttaatagatg aagcgcctgc tttggctata
     2461 gcttttgctt tggctaaggg taaatctagt ttaataaatg ctaaagaatt acgcgttaaa
     2521 gaaagcgata ggattgctgt gatggttgaa aatctaaagc tttgtggtgt tgaagctaga
     2581 gaacttgatg atggttttga aatagaaggt ggatgcgaac taaaatcttc aaaaattaaa
     2641 agctatggag atcaccgtat tgctatgagt tttgctattt taggtttgct ttgtggaatc
     2701 gagattgatg atagtgattg tataaaaact tcttttccaa attttataga gattttatca
     2761 aatttaggag ctaggattga ttattgaatt agcaaaaaac tatggttttt gttttggtgt
     2821 taaaagagct attaaaaaag cagaacaaat aaaagatgct gcaactatag gccctcttat
     2881 tcacaataac gaagaaattt ctcgtttgca aaaaaatttt aatgtcaaaa ctttggaaaa
     2941 tatacaagct ttaagtaatg aaaaaaaggc tattataaga actcatggta ttacaaagca
     3001 agatttagaa gaattgagaa aaaaagatat agaaattttt gatgccactt gtccttttgt
     3061 tacaaaacca caacaaattt gcgagcaaat gagtaaggag ggttatgaag ttgttatttt
     3121 tggagatgaa aatcatcccg aagttaaagg agtcaaaagt tatgtaagta caaaagctta
     3181 tgtagttttg gataaaaaag aacttcaaaa tataaaactt cctaataaaa tagctgtagt
     3241 aagccaaaca actaagaagc ctgagcattt tatggagata gtaaattttt taatacttaa
     3301 aaccaaagaa gtaagagttt ttaacactat atgtgatgca acctttaaaa atcaagatgc
     3361 cattaaagaa ctctcgctta aaagtgatgt tatggttgtt gtagggggta aaaactcagc
     3421 caatacaaaa caactttttt taattgcaaa aaccaattgt gaagatagct atctaattga
     3481 aaccgaagaa gagttaaaaa aagaatggtt tttggataaa aaacattgcg gcattagtgc
     3541 aggtgctagt actcctgatt ggatcataca aaaagttatc gccaaaataa aaaaatttaa
     3601 aaattaatta aaaaatgttt tcaaatagaa taaaaaagtc aaaaatttaa aaaaaattaa
     3661 caaaaataaa aaaacttaac actaattaaa gaaaaataag gtaaaatcaa tcaatttcta
     3721 aaaattattt taaaggacca taatgagcga ggtgaacaaa aaagttcaag gcggcgtaga
     3781 tgattatctt gaggaagaag attttggaca gcttttagaa gcttttgata aatcaagaga
     3841 agaggctaca acagagggtg tgattgtaga gatcaaaaat gatgaagttt atgtagatat
     3901 aggtaaaaaa tctgaaggta ttttagctct tagcgaaata caagatgaca attctaagct
     3961 attatttaat gtaggcgatg gtattaaagt tgctgttatg ggttctcgtg gtggcagatc
     4021 tttactttct cataaaaaag ctttgagaaa agaaaaagtt atcgaattta ttaaaaacta
     4081 tcaagaaaat caagatgata tttttaccgt aaaagtagtt ggaaaaaata aaggcggatt
     4141 gatagttgtt gatgaaaatg atgttgaatt tttcttacca aaatctcaat atggcttcaa
     4201 agaaacaaat aatattatag gcaaaacgtt taaagttaaa attattaaaa tcgacaaaga
     4261 tgagcaaagt atcattgttt ctcgtaaaaa aactttagat gacgagagaa gaaaacgcaa
     4321 agaattgatc aataatgtag cacaacaaga agatttaatt gaaggtattg tgaaaaaaat
     4381 tactacttat ggtatgtttg tggatgtagg aggtgttgat ggtcttgttc attacagcga
     4441 aatttcttac aaaggacctg taaatcctgg aacactttat aaagagggtg ataaggttcc
     4501 agttaaagtt ataaagtatg ataaagaacg caaacattta tccttgtcta taaaagcggc
     4561 tttacccgat ccatggagcg agataaaaga tactcttgat gtaggtgata ccattaaagt
     4621 aatagtatca aatatagagc cttatggtgc ttttgtggat ttaggaaatg atatagaagg
     4681 atttttacat atcagtgaaa tttcttggga taaaaatatt aaaaatccaa aagattatat
     4741 caacaaaggt caagaaattg atgttgaagt aattgaaatc aatccaaatg aaagacgctt
     4801 aagagtttct ttaagaaatt tactttctag accttttgat gaatttatga aatcttacaa
     4861 aattgcggat gtggttgaag gagaaattac ctcggtaact tcttttggtg cgtttgttaa
     4921 acttggcggt attgaaggtc tattgcataa tgaagatgct tcttgggata gaaacgataa
     4981 atgtaaagac aaattctctc aaggggataa aatcaaggta aaaattatca aaatagatga
     5041 agaaaaccaa aaaatatcat taagcacaaa agaattaaac agttctccag tgcaagaata
     5101 tgccaaaatt cataaagtcg gcgatattgt aaaaggcact atccgtgata ttaaagattt
     5161 tggtgttttt gtagagctaa gtaaaaatgt tgatgcttta attcataaag aagatataag
     5221 cacttctatg cttgaaaatt taaaaattgg cgacgatatt gaagctgcta tagtttttat
     5281 tgatgaaaag aaaaatagaa ttcgcctaag tgttaaaaat cttgttagaa tgaaagaaag
     5341 agaagttctt aatgaaatca ataatgatga taaagtgact ttaggtgata tcattaaaga
     5401 tcagctagct taatgaaaaa atacattaca ataagcattt tgagtatttt attactcatt
     5461 ttgcttgctg ttgtttttac attgctttgg caatttaaag ctaatgtaaa tttcattcca
     5521 caatttgcta aagatacaaa tacacagcca agcattcaaa cccaaaatca agatctttca
     5581 tggcaagaag aattagcaaa atggcctaca agagatttta ccccagcagc agaaaaattt
     5641 accttatatt ttgatgcgga tactagcgag cttaaggaga aaaataaata ttatcaactt
     5701 atagttggaa aatatgatat ttattctatg ttttgcttaa gacagacttt aaattctttt
     5761 aatgtgaagt attttcttct taaatcaggt gatagtccag aaatcttttt ggatacaggt
     5821 aatgaaaaac ttatagatga tattatcaaa gaattaaaaa aatataaaat aaatacagaa
     5881 gtaaaggaaa tttggttatg aaaaaaaaga ttatagtatg tgatgctatt ttggataaag
     5941 gtgtcgatat tctaagaaaa gctgaagata ttgagcttat agaagctgca aaagttccaa
     6001 aagatgaact tatgcaaatg ctaagtgatg ttgaagttgc tattactaga agttctacgg
     6061 atgtagatgt aaatttctta aatcatgcca aaaaattaaa agcgcttgtg cgtgctgggg
     6121 tgggcgtaga taatgttgat attccagagt gttctaaaag aggagtgatt gtgatgaatg
     6181 tcccaactgc aaatactatt gccgcagttg aactaacaat ggcacatctt ttaacatcag
     6241 ctagaagctt tgtcaatgct cataattttt taaaaattga aagaaaatgg gaaagagaaa
     6301 aatggtatgg cattgaattg atgaacaaaa cgctaggggt tataggtttt ggaaatatag
     6361 gttcaagagt ggctatccgc gctaaagcat ttggtatgaa aattttagcc tatgatccgt
     6421 atatttctgc ttctaagatt acagatttag atatggagca agcaaaaaat ttagatgaaa
     6481 ttttagaaaa aagtgatttt attaccattc acacaccaaa aaccaaagaa accaatggta
     6541 tgataggaaa gcaagaaatt gcaaaaatga aagatggaat aagattaata aattgtgctc
     6601 gtggaggatt gtacacagaa gaggctttat atgaaggttt aaaaagtggt aaaatagctt
     6661 ggcttggtat agacgtgttc gataaagaac ctgcgactaa tcatcctctt ttagactttg
     6721 aaaatatttc agttacttct cacctaggag caaatacttt agaaagtcaa gacaatatcg
     6781 caagagaagc ttgtgagcaa gcattaagcg cagcacgagg cgtggcttat cctaatgcct
     6841 taaatttacc aattaaaact gaagatttac caccttttgt agctccttat atagaacttg
     6901 tttctaaaat ggctttttta gctgttcaaa ttgataaaaa tcctataaaa agtattaaat
     6961 tagaggctga aggaattatt ggcgagtatg caaattctat gctaaccttt gcagctgttg
     7021 gtgctttggg tggaatttta ggagagaaaa ttaattatgt taatgcagaa tttgtagcca
     7081 aagaaaaagg agttgagtta tcttgcgaaa ctcttccaaa tagtggttat aataataaac
     7141 ttagcgttaa aattatcacc gaaaattcaa atatcagtgt ttcaggaaca gtatttaatg
     7201 aaaatgaaca acgcatagtt ggattaaatg gctttaaaac tgattttaag ccaaaaggga
     7261 aaatggttat ttttaaaaac aaagacatac caggagttat agctaaaatc agttccgttt
     7321 tggcagctaa aaatatcaac atagctgatt ttaggcttgg tagagatggt tttgggtatg
     7381 ctttggctgt tgttttgatt gatgaaaaag ttcaaaaaga agtattagat gaactaaaac
     7441 aattagaggc atgtgtattt gtccaatatg ttgaaattta aaattttaat tatagaagat
     7501 gatatagatt taaacgaact gcttgtttta aagttaaaat ctagtggtta tgaagttata
     7561 tctttagcgg atttttttgg agttgaagat ttgctcgata atgagcaaat cgatctttta
     7621 atagtcgata gaaatttgcc aagtggggat tctttagaaa aaattcaaga tttaagagag
     7681 caaggataca aagaagcagt tatttttctt acagccaagg ctttgcatca agatttgctc
     7741 gaaggctttg aaagtggttg tgatgattat gtttgcaaac cttttgattt taatgagctt
     7801 ttgcttcgca ttaaagcaat tttaaaacgc cataagaaag aagaagaaaa gctatctttt
     7861 ggtgatttta ttttagattt ggctaattat gaattctttt acaaaaatca aaaattagaa
     7921 atctcaaatc ttgactatga gcttttaaaa tgtttttttg aaaatccaaa taccttgctt
     7981 actagacaat ttttaagcga aagtgtttgg aaagatgata ctacaagtga taaaacaatc
     8041 aatatagctc taacaagact tagaaataaa tttccaa
//
LOCUS       DAQSLY010000071         8065 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.071, whole genome shotgun sequence.
ACCESSION   DAQSLY010000071 DAQSLY010000000
VERSION     DAQSLY010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8065
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.071"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            54..569
                     /gene="nrfH"
                     /locus_tag="R2H98_001231"
     CDS             54..569
                     /gene="nrfH"
                     /locus_tag="R2H98_001231"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEE9024106.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            584..2416
                     /locus_tag="R2H98_001232"
     CDS             584..2416
                     /locus_tag="R2H98_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEE9024107.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2551..3105
                     /locus_tag="R2H98_001233"
     CDS             2551..3105
                     /locus_tag="R2H98_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024108.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEFLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYSITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3169..3258
                     /locus_tag="R2H98_001234"
     tRNA            3169..3258
                     /locus_tag="R2H98_001234"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3203..3205,aa:Ser,seq:gct)
     gene            complement(3331..4323)
                     /gene="ceuB"
                     /locus_tag="R2H98_001235"
     CDS             complement(3331..4323)
                     /gene="ceuB"
                     /locus_tag="R2H98_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEE9024109.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAIDALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVIVGNK
                     ERAQGILDNVLVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(4336..5091)
                     /locus_tag="R2H98_001236"
     CDS             complement(4336..5091)
                     /locus_tag="R2H98_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9024110.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELNNLRNEFLDTLSGGQKQRVFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5088..6026)
                     /locus_tag="R2H98_001237"
     CDS             complement(5088..6026)
                     /locus_tag="R2H98_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEE9024111.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     IAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6019..6987)
                     /locus_tag="R2H98_001238"
     CDS             complement(6019..6987)
                     /locus_tag="R2H98_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024112.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(7073..8062)
                     /locus_tag="R2H98_001239"
     CDS             complement(7073..8062)
                     /locus_tag="R2H98_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEE9024113.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSEATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
BASE COUNT         2873 a         1192 c         1293 g         2707 t
ORIGIN      
        1 atttatttct gggaaattct gtgacattgt tgtttcattg aagattttaa gaaatgataa
       61 ttttaaggag gaaaattttg aagaaaactt cgaatctttt tactattttt cttgttttgc
      121 tttttgtttt ctttgcggtt gggttttata ctttttataa cgctaagggc acatcttatt
      181 taagcaatgc aagtgaatct tgtaataact gccatattat gaatgaagtt tataacgaat
      241 acatggcagg accacactct caaaaagtca aaggcgaacc aagagcaact tgtgtggatt
      301 gtcatttgcc acataatttt gtagctaagt ggatagctaa agcgcaaagt ggtttaggac
      361 atgcttatgc ttttactttt aaacttgatg agttgcctac aaatttgagt gcgactgaaa
      421 aaagcagaaa aatggtgcaa gaaaactgca tacgctgtca tgcagatttt gctcaaacag
      481 ctatcaatgc tacaacaaat ccacatgcag acaagtcatt aaattgtgct tcttgtcata
      541 aagatgttgg acataaacac ggaatttaat aaggagaaga tgaatgaaaa aaaatatttt
      601 acgcttaggt attgtcgttt tggttttact tatagcggga gttttatggc taaataatga
      661 tatcaatcaa aaaaaagaag atgaagcaaa taaaaatgcc attgcagcaa atgctgattt
      721 ttctttgctt agtgatgatg atccaaattt tgaaaaatgg ggtaaggttt ttccagagca
      781 actaaaaatg tatttaacgg ttgaaaaaga agaacctaag gctactgaat ttggtggtaa
      841 tttagcttat tcaaaattaa ttcgctttcc tcaattaacc atactttggg caggatatcc
      901 ttttagtctt gatttcaatg aagaaagagg gcatttttgg gttcaagtag atcaaatgaa
      961 aacagcaaga aacaacaaag attttcttaa tgctcacggc cttgctgctt ttaaaggcca
     1021 gcccgcagct tgtatgaatt gtcatagtgg atggactcca tggcttataa aaaatgttgc
     1081 taaaggagat tttactgctt ttaactctac aaattattgg actatgatta aaaatatccc
     1141 agccgttgat ggtatagtgg aaaattcacc tgaacatgca ggtccacatg gtggtaaaag
     1201 aatgggtgta acttgtgcag attgtcacaa tccaaatgat atgagtttaa gacttactcg
     1261 tccagcagct attaatgctt tagtttctag aggatatgaa aaagatccag tgcaaggcgt
     1321 aaaagctaca agagaagaaa tgagaacttt agtttgctct caatgccatg ttgaatacta
     1381 ttttaaacca acgggggaaa aagtaaaagt aatgggtgaa actattgtag atgatagttc
     1441 taaaaaatgg tggaatggaa ctcagaaaaa ttatgatgag tatgaatttt ggagagatgg
     1501 taataaagct aaagagattg aaaccgatgg tatagtttta acttttcctt ggagtgagtg
     1561 gaaaaaaggg caaccattta gaattgaaat gttagatgat tattatgata aagttcgtgg
     1621 agtatttgga gctgatttta ctcataaatt aacaggggcg caaattatta aaattcaaca
     1681 cccagaaagc gaactttata gtggcggtgt gcatgctgca aatggggtaa gttgcgtgga
     1741 ttgtcatatg ccttatgtta gagaaggagc taaaaaggtt actcaacaca atatcacctc
     1801 tcctttaaga gatattaact ctgcttgtaa gtcttgtcat aaacaaagcg aagattattt
     1861 aaaagctcaa gtgcttgaca tacaaaatag cgttgcacat gatcaaagaa ctgcagagta
     1921 tgcaattgtt agtttgatta tggatactaa aaaactacgc gatgaactag gtaatatgga
     1981 aaaattccaa agcgatggaa aagctgatgc gaaaaaaatt agcgaagaac taaaagaagt
     2041 tttagaactt catcgtaaag ctcaaatgag agcagatttt gttaatgctg aaaactcaac
     2101 tggtttccat aatcctcgcg aagcttcaag aatgttattg caagctgttg atatggcaag
     2161 aatgggacaa actaaacttg tagaaatcgc cgcagcaaat ggaattaaag attttaaaac
     2221 ttcaaattta ggttttgaag atattcaaaa atttaatcca ggagagcttt attataaagt
     2281 agatgttaat aatcataaag ctggagagcg ttactatgca gatgaaaaag atgttaatgg
     2341 taatcctcca aaagaacttt tagagcatga taaagagctc gctccttata attatcaagt
     2401 gattgataaa aaataattct taagccctat aaattatggg gctttttctt ttttatttta
     2461 aaaaatataa actttttatt taaaattcac ttttgcttca ctttgttttg tcaaaatatc
     2521 acaaattttg ataatcaaaa aggagttaaa atgatcaata aaaataaatt gtttagacag
     2581 gttcatatct atcttagttt gttcttcttg ccttgtgctt tgctttttgc tttaacgggt
     2641 atagcgtata tttttggtat taatcaagat gtgggcttaa aagttgagca gtatcaattg
     2701 tcaaaagtta tagaaagtgg taaagaaaga gaagctttaa tagagttttt aaaaacaaat
     2761 ggtttaaaag tgccatctaa tacaaatata attaaaagta aagataaagg tataacaata
     2821 ggtggaactc attatagtgc taatataact caaaattcta ctaatgaata cagcattact
     2881 ctaaaaacaa gatctttgct tggagatatg attatgcttc ataaagataa gggtgcttgg
     2941 tatttttctg tgcttagtgt aggttttggt attactttat ttatgcttta tatttcaggg
     3001 cttatgatta ctttgtttgc aaataaaaaa gatagaagta aacaatttgc agttcttgga
     3061 gtaggggttg ttgtaacttt gcttttggct tatcttagcc tttgattttt cctagctttt
     3121 taagctaggt attatttatt tttttgtata attacacttt actttattgg acagatgggt
     3181 gagcggctga aaccacaccc ctgctaaggg tgcagatctt aacgggtctc gagggttcaa
     3241 atccctctct gtccgccact aaaactttct tgaaaatccc aagtatttta ttaagtatcg
     3301 aagcaagaga ctagcccttg cgaagttata ttattttaca gcgtttttga tttctaaaat
     3361 catagttttt aaagactcta gcccatttcc acttgctaaa taccagtatt ctggatcaag
     3421 atagatgatt tttttgtttt gtgctgcttt ggttttagcg acaagcacat tatcgagtat
     3481 gccttgagcg cgttctttgt tgcctacgat gacatttcta tcaacaacaa aaatataatc
     3541 aggatttttt tctaatataa attcagagtt gatacttttt ccgtgtgtgc ctacttttat
     3601 attctcatct actgcattaa tccctaaaac atcgtgaata atcccaaagc gagattgagg
     3661 accaaaggct gaaattttgt tagaatttgt aagaatgata agagcttttt tatcttcatc
     3721 aactatactt ttggcttttt caatttcatt tttaatatct gaaatttttt ctaaagcttc
     3781 tttttctaaa ccataaagtt ttgcaacgct taagacattg ttttcaaaag agcttaaaaa
     3841 atttgcatta tcaagaccta caaataaagt tggagctatt tcttttaact tatcataaaa
     3901 tttactttgg cgtccagaaa tgatgataag atcaggtttt aaagcatcaa tggcttcaaa
     3961 atcaacttgt tgtactccac ctacactagg tttgttttta aattgttgta ggtattttgg
     4021 taaattttta gcaggaacgc caacgacttt atcatttaat tttaaagcat caaaagtatc
     4081 taaaattcca agatctaaga tcactacctt agaaggattt ttagggattt tattttctcc
     4141 tagactatcc ttcactaaaa aactatcacc ctcatcgctc atactaatag gcaaaacttt
     4201 caccgtagca gtgttggttt ttgttgtaga acttgcgttg ttttcatttg agtttgaatt
     4261 acaagctgtt aagattagac ttaaaaaaaa tgcaaaaaat gcaaaaacta aagatttttt
     4321 catattttct cctttttaaa aataaataca aattttctta ccattaattt gacttacggg
     4381 tatatccata tcataaattt gttttaaatt ttcttgattg atgatttcat cttttgagcc
     4441 ttgttttaaa agcttcccat cttttaaggc tatgatttca tcagaataaa tcgaagcaaa
     4501 attaatatca tgtaatacaa cagctatact tttgttaaag tctttgacta aatttttcat
     4561 tagttgcatg atttgtacgc tatgcttcat atcaagattg ttcaaaggtt catcaaacat
     4621 tataaattca gtatcctgag cgatgatcat ggctataaaa actctttgct tttgtccccc
     4681 gcttaatgta tctaaaaatt catttcttaa gttgttaagt tccatgtatt ctaaagcttc
     4741 attgattttg attttatcgt ttgtattaag tcttccttga gaatgcggaa aacgcccaaa
     4801 agcgactaat tcttcaactt ttaatcttaa attgatattg ttttgttgtt tgagaatgga
     4861 aattttttgt gctaagattt gctctttata attttttaaa ttcattccat cgatataaat
     4921 ttctccacta ctaggtttta tcaaacgact tgctagagct aaaagagtgg attttccagc
     4981 gccattggct cctattatag aagtgatttt gcctttatga aaatcaaggc taagatctga
     5041 aataatgact ttattatcat aaaatttggt gatatttttt agtttaatca taatttatta
     5101 ccctttaata caagatagat aaaatatatc ccacctaaga aattaataac cacgcttata
     5161 gtggcattat aatcaaaaac tctagagaca aaaaacaccc ctccaagtaa agccaaaata
     5221 ctaataagta tacaagcgct tagcaaaata ctatgctttg cagttttaaa tagttcataa
     5281 gtgatattta ccaccaaaag ccctaaaaag gttataggac ctacaagtgc ggtgctaata
     5341 gaagttaaaa tagctatgat aatcattaat tgttttgaaa ttttttgata atttatccct
     5401 aaatttatcg ctaaatcttt gcctaaattt aaaggatcta aaaatttcat atagcgaaaa
     5461 atccatataa aacttaaaaa gctaataata taagcaagaa ttaaaacatc aaaagcaata
     5521 ttatcaaaac tagcaaacat tcttccttgt attaccatga attcatcagg gtcgattagc
     5581 acttcaaaaa aagagcttaa agtgctaaaa agtgttccaa aaactaaacc taaaagcatg
     5641 ataagataaa tacttctatc gctactaaat aaaattttat aaagtcctag tgaaaaaacc
     5701 accatacaaa ctagagtgat taaaaaattg atatcgtttt tataaacact taaattagcc
     5761 gcaccaaaag aaaagataag agcactttga agcaacatat ataaagaatc taatcctatg
     5821 atagcagggg ttagaatttt gttattgcat aaagtttgaa aaatcactgt tgaaacagcg
     5881 atacaaatag ctattatgat aatagctgca atttgtaaaa aacgactttt taaagcatac
     5941 tcatcaaagc catttaaacc cacaagtata aaaatcccta tcataccaag tgttaaaaag
     6001 cttaaaatta gcattttttt acgcataaac tttccttttt agcaaaagaa agataaagat
     6061 taaagatcct aaaacacctg tagtgatgct taaaggcatt tcaaaaggaa agatgacaag
     6121 tcttgaaatg atatcgcaaa caagcaaaaa caaagctcca caaagtgcta tatagataag
     6181 attttttcta agattatcac ctagataaag agctactaaa tttgggataa ttagccctaa
     6241 aaaagggata atcccaacgc ttacaatcac taaactagtg ataatgctta caatcatcaa
     6301 gcctaaaaat aatatcccat tataagaaat tccaagattt aaagctatat cttcacccat
     6361 gccaactatg gtaattttat gagctaaaaa ataagcaagt ataaaaagtg gtaaagaaat
     6421 gtagagcaat tcataatttc cctgcataac atttgccata ctgccttgta gccaaccttg
     6481 gatattttgt atataattta aagcataggc aaaaaaagtg gttatagcac taataatacc
     6541 tccaaacatc aagcctatca aaggtacaaa aatcacatct ttgagtttga tttttcttaa
     6601 aatttggata aatataaaag aacccaaaag tgcaaataca gaagcaatga tagtttgagt
     6661 aaaaaaagac gctccagcaa aaaatattaa agaaataagt atgccaaatt tagcacaatc
     6721 catagtccct gctgtagttg gggaaacgaa tttattttgc gtgagttgtt gcatgataag
     6781 cccgcatata ctaagactca ttcctgtgag taaaattgct ataagtctag gaattcttgt
     6841 gagagttatg atttctagtt gagtggagtt aagattaaga atatctttta cattgatact
     6901 gataactcct ataaataaac ttatcattcc aaagaataaa agtaaagcta taagcacttt
     6961 taaactcaat atatgcttaa aaaacaaatc tttccttata gtaataataa ttatcaaaaa
     7021 tgaaattgta atgaaatttg ttttaagaaa tgataaaact acaaaggata ttttagtaag
     7081 aaatcaaaaa tccagtggaa agtctttgta agtgtttgtt atagtctata aggctttctc
     7141 catagccatt aaagtattgt aaataccaat aaattccgtt attaaaaata tcatatccta
     7201 gatcaacttg tatagcgcct ttgttattgt ggaatttaag attatttctt agcataagat
     7261 tgataaaata atcatcacct aaatacgcta aattcacatc aaaatttccc atataatgca
     7321 agatggcagg attatcatca tcttttttgt tttcaggaat tctataccaa aggcgtggaa
     7381 caaataaaaa tttattatat aaaatagcag tagatacata aattctattc catgagcgag
     7441 attgtaaatt ctcatctccc ttgccattgc tttcatgcaa tatacctacg cgtagattgt
     7501 taaaaaattc ataatcttta agatataaag gaagatctat aaaaaattct ggttgatagt
     7561 tggtttctct aaaaggagaa gaatgctcat aaatttgcca ccaagaagtt tgagtatagg
     7621 ctatataata tttttcatct agtcctagta aattttcaaa aagtcttttt ttaacactaa
     7681 gttggaattt cgcctcactc ttattattat ttactcctaa agaattaaaa ctataagcaa
     7741 aaggtaaaaa ataattcatc ttataagagc taatgccaag gggattaaag ctttcatttt
     7801 caccaagata attagccaaa gctaagcgag aaaagtcttg tttttcttct ttttttatag
     7861 tgatagaatt ttgcatttgt gttgcttcgc ttgagttatt ttgttcttga gaaatcaaaa
     7921 cagatgaatt ttttaaagcg agttttttgt aaatttccat agctttttta taatcgcctt
     7981 gtttttcata ctctaaagct tgttgtaaat cactagccca tataaaaacg cataagctta
     8041 aaaataaagc aatttttctc atttt
//
LOCUS       DAQSLY010000072         7979 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.072, whole genome shotgun sequence.
ACCESSION   DAQSLY010000072 DAQSLY010000000
VERSION     DAQSLY010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7979
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.072"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..107
                     /locus_tag="R2H98_001240"
     CDS             <1..107
                     /locus_tag="R2H98_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEE9024114.1"
                     /translation="KLNQSKPTIIATFKFLEEKKLFKRLKNGFYQLKI"
     gene            116..1111
                     /gene="pyrC"
                     /locus_tag="R2H98_001241"
     CDS             116..1111
                     /gene="pyrC"
                     /locus_tag="R2H98_001241"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEE9024115.1"
                     /translation="MKLKNPLDMHLHLRDESMLALVAPFSAKDFKAGVIMPNLITPLT
                     EIDVLKAYKERILKACKNEDFTPLMTLFFKDYDEQFLEKAKDELFAIKLYPAGITTNS
                     DNGISSFDIEKLKPTLNTMSELNIPLLVHGETNDFVMDREANFAKIYEKLAKNFPKLK
                     IVMEHITTKVLCDLLKDYENLYATITLHHLMITLDDVVGGKMDPHLFCKPIAKRYEDK
                     DALCELAFSGYEKAMFGSDSAPHPLHTKECCGCAAGVFSAPVILPVLVELFEKHSNET
                     NLQKFISDNACKIHNLKFEKDKIVILEKQEWQVAQKYGDVVPFMAGKTLNFKVAN"
     gene            1121..4273
                     /locus_tag="R2H98_001242"
     CDS             1121..4273
                     /locus_tag="R2H98_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEE9024116.1"
                     /translation="MLKAYLENIKDISTNDKEHTHRTALQNLLQAIKDNQDKQNKISI
                     KQEPNNDKEGRGAPDFLITKDFLTLGYIENKRVNANLDNIITSDQILKYTKLSPNIIL
                     TDYLRFILLSLNDKNEIIICKEVKICSLDEIKSVIKNQSLLDTKTQELNELFSIFFSK
                     IPNPINSALDFANHLSLRTRILKDELLLSSKNETLLSLFNTFKETLYKELSYEEFCDS
                     FAQTLTYSLFLAKLNNDTAKEIDLNNAKKFIPKSFPLIRSMSGFLDDSFENLENIKWL
                     LEEIINIINHIDITSIIKELNKTGEKDLFNRPTILSTHKDPYLHFYETFLASYDPKLR
                     EVRGVYYTPAPVVIFIINAIDEALKQDFNHKKGLSEALDKNITLLDFATGTGTFLLEA
                     FRKALEPISKNSVNYNPKVLIDKFCGFEFLIAPYTIAHLKISQSFKEEFNSPLNDDES
                     LKIALTNTLYFKSISKEQNDQNTLFTLIDLTKEFKKAQKIKEEQILIITGNPPYSGAS
                     SNKGLYEDEIKISYGLEPSKANLNNEQKKWISSYFKEKSKQNTSTFKAIYEKHKLENE
                     KNSKVMLDDYVKFIRFAQSKIDSQESGIFAFISNNSFLDNPTFRGMRYSLMQSFDKIY
                     ILNLHGDTRKKEKAPDGSKDDNVFDIMQGVSINIFIKQNSKAKNTNIYYHDLYGKRKD
                     KYEFLYENDLNSIKWTLVKNNEPFYLFLPQNNDLLEEYNKGISVKDIFMLSSVGIASS
                     KDAILISTNNKKLEQQVYNFYNEFDKKYIKEIAHKPFDTQKIYYDIKKVERPRIDIME
                     HFLGYENIGLIYDRGTNLKEISNLFISSKVIDKHLVGANSYVSPLYLYPTTRSKKFLK
                     KENPNFNEENFTSKIENFKESFRTFIDELYKEKFSPEDILGYIYAVLFHKIYREKYLD
                     FLKIDFPKIPFTKDKNTFKNLSKLGLKLVNLHLLKNDELDFNVGEALFKDIKNKNFKI
                     QKIKYNKDVKELFINESLYFTKVSLEIYEFKIGGYAVLDKYLKSHKEEDIDHKHFTLI
                     IQTLDKTLKIQDEISKINLS"
     gene            complement(4279..4992)
                     /locus_tag="R2H98_001243"
     CDS             complement(4279..4992)
                     /locus_tag="R2H98_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEE9024117.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYKAFLNLASKKVYLGWASRRKSSFLDPIFEHFNTHFKG
                     FYESDLQGFLNTQNIPYEYEIFNETRVVKRDKQSAIENALWHLSMNGINTNKQELESF
                     VKDEVEEIIEAKIKLLIIS"
     gene            complement(5073..7052)
                     /locus_tag="R2H98_001244"
     CDS             complement(5073..7052)
                     /locus_tag="R2H98_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEE9024118.1"
                     /translation="MKSVKLKVSLIANLIAVVCLIILGVVTFIFVKQAIFHEVVNAEI
                     NYVKTAKNSIESFKARNSLALESLAKSILKHPIEQLDSQDALMHYVGKDLKNFRDAGR
                     FLAVYIAQPNGELVVSDPDSDAKNLDFGTYGKADNYDARTREYYIEAVKTNKLYITPS
                     YIDVTTNLPCFTYSIPLYKDGKFIGVLAVDILAADLQAEFENLPGRTFVFDEENKVFV
                     STDKTLLQQGYDISTIANLAKTKEDLEPFEYTRPKDGNERFAVCTKVSGIYTACVGEP
                     IEQIEAPVYKIAFIQTVIVVFASILSIILLYFIVSKYLSPLAAIQTGLTSFFDFINYK
                     TKNVSTIEVKSNDEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNLTAR
                     ITANPRNPQLIELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDANGAV
                     EVTTNALGQEIIKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALE
                     EITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGF
                     AVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQ
                     TTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            complement(7253..7762)
                     /locus_tag="R2H98_001245"
     CDS             complement(7253..7762)
                     /locus_tag="R2H98_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEE9024119.1"
                     /translation="MHFTIFHIIVFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVNGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(7762..>7979)
                     /locus_tag="R2H98_001246"
     CDS             complement(7762..>7979)
                     /locus_tag="R2H98_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEE9024120.1"
                     /translation="FKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKN
                     ATQFQRIAFENFNYENNYTIRLVSECF"
BASE COUNT         3018 a         1170 c         1093 g         2698 t
ORIGIN      
        1 aaaaattaaa ccaaagcaag cccactatca tcgctacttt taaattttta gaagaaaaaa
       61 aactttttaa gcgtcttaaa aatggatttt atcagctaaa aatataggag ataaaatgaa
      121 acttaaaaac cctttggata tgcatttaca tttacgcgat gaaagtatgc ttgcgcttgt
      181 agctcctttt agtgcaaaag actttaaggc aggggttatc atgccaaatt taatcacccc
      241 acttactgaa atagatgtat taaaagctta taaagaacgc attttaaaag catgtaaaaa
      301 tgaagatttt acgcctttga tgactttatt tttcaaagac tatgatgagc aatttttaga
      361 aaaagctaaa gacgagcttt ttgctatcaa gctttatcct gcaggcatca ctaccaactc
      421 agataatgga atttcaagtt ttgatataga aaagttaaaa cctacattaa atactatgag
      481 cgaattaaac atacccttac ttgtgcatgg agaaaccaat gattttgtca tggatagaga
      541 agcaaatttt gccaaaatat atgaaaaatt agctaaaaac tttccaaaat taaaaattgt
      601 aatggagcat attaccacta aggttttgtg tgatttatta aaagattatg aaaatttata
      661 cgcaactatc actttgcatc atttaatgat aacgcttgat gatgtagtgg gtggtaaaat
      721 ggatccacat ttattttgca agcctattgc aaaacgctat gaagataaag acgctttatg
      781 tgagcttgct tttagtggct atgaaaaggc tatgtttgga agcgatagcg cgcctcatcc
      841 attgcacact aaagaatgtt gtggttgtgc ggctggagtt tttagcgcac cggtgatttt
      901 acctgtatta gttgaacttt ttgaaaaaca ttcaaatgaa acaaatttac aaaaatttat
      961 ttcagataat gcttgcaaaa tccataatct taaatttgaa aaagataaaa tcgtcatctt
     1021 agaaaaacaa gaatggcaag tagcgcaaaa atacggcgat gtagtgccat ttatggcagg
     1081 gaaaacttta aatttcaaag tcgcaaatta aaggaaatta atgctaaaag cttatctaga
     1141 aaacataaaa gatatttcta caaacgataa agaacatacc catagaacag ctttgcaaaa
     1201 tttattgcaa gctataaaag ataatcaaga caagcaaaat aaaatctcta tcaaacaaga
     1261 accaaataac gacaaagaag gtagaggtgc tccggatttt ttgattacaa aagatttttt
     1321 aacactaggt tacatagaaa acaaaagagt aaatgcaaat cttgataaca tcataacaag
     1381 tgatcaaatt ttaaaataca caaaattaag cccaaatatc attctcacag attatttaag
     1441 atttatatta ttaagtttaa atgataagaa tgaaattatc atttgtaaag aagtaaaaat
     1501 ttgctctctt gatgagataa aaagcgttat taaaaatcaa tctttgctag atactaaaac
     1561 acaagagtta aacgaacttt ttagcatatt tttttctaaa atcccaaatc ccataaattc
     1621 agctttagat tttgcaaacc atctaagcct aagaacaaga attttaaaag atgagctttt
     1681 attatcaagc aaaaatgaaa ctttattaag tttatttaac accttcaaag aaacacttta
     1741 taaagaatta tcctatgaag aattttgcga ttcttttgca caaactttaa cttatagctt
     1801 attcttagca aaattaaata acgataccgc aaaagaaata gatctaaaca atgctaaaaa
     1861 attcatacca aaatcatttc cattgatccg ttctatgagt ggatttttag atgatagttt
     1921 tgaaaattta gaaaatataa aatggctttt agaagaaatc ataaacatta taaatcacat
     1981 agacattaca agcattatta aagaattaaa caaaacaggc gagaaagact tatttaatcg
     2041 tcctactatt ttatctactc acaaagatcc ttatttgcac ttttatgaaa catttttagc
     2101 aagctatgat ccaaagctta gagaagtaag gggagtgtat tatactcctg cgcctgtagt
     2161 aattttcatc ataaatgcca tagatgaagc tttaaaacaa gatttcaatc acaaaaaagg
     2221 cttaagcgaa gctttagata aaaatataac cttacttgat tttgccacag gcactggcac
     2281 ctttttactt gaagctttta gaaaagcttt agaacctata agcaaaaata gcgttaatta
     2341 caatccaaaa gttttgatag acaaattttg tggttttgaa tttttaatag ccccttacac
     2401 catagcacat ttaaaaattt ctcaaagttt taaagaagaa tttaactctc cattaaacga
     2461 tgatgaaagt cttaaaatag cactaacaaa tactttatat tttaaaagca tatccaaaga
     2521 acaaaatgat caaaacacgc tttttactct cattgatcta acaaaagaat tcaaaaaagc
     2581 acaaaaaata aaagaagaac aaattctaat catcacaggc aatccgcctt atagtggagc
     2641 aagtagcaac aaaggcttat acgaagatga gatcaaaata agctatggtt tagaaccaag
     2701 caaagcaaat cttaataatg aacaaaaaaa gtggataagc tcgtatttta aagaaaaatc
     2761 caaacaaaac acaagtactt ttaaagccat atatgaaaaa cacaaactag aaaatgaaaa
     2821 aaattcaaaa gtaatgcttg atgactatgt aaaattcata cgctttgccc aaagtaaaat
     2881 cgactctcaa gaaagcggaa tttttgcttt tatttcaaat aatagctttt tagataatcc
     2941 tacctttaga ggtatgagat attctttaat gcaaagcttt gataaaattt atatacttaa
     3001 tttacacggc gatactagaa aaaaagaaaa agctcctgat ggaagcaaag atgataatgt
     3061 ctttgatatc atgcaaggtg tgagcataaa tatctttata aaacaaaatt caaaagctaa
     3121 aaatacaaac atttattatc atgatttata cggcaaaaga aaggataaat acgaattttt
     3181 atatgaaaat gacttaaatt ctataaaatg gactttggta aaaaacaacg agccttttta
     3241 tcttttttta ccacaaaata atgatttatt agaagaatac aacaagggca taagcgtaaa
     3301 agatattttt atgctttcaa gcgtaggaat tgcaagctct aaggatgcta tattaatctc
     3361 aacgaataat aaaaaattag aacaacaagt ttataatttt tataatgaat ttgataaaaa
     3421 atacatcaaa gaaatagcac ataaaccttt tgatacgcaa aaaatttatt atgatataaa
     3481 aaaagtggaa agaccaagaa ttgacataat ggaacatttt ttggggtatg aaaacatagg
     3541 tttgatttat gatagaggca ctaatctaaa agaaatttca aatttattta taagctcaaa
     3601 agttatagat aaacatttag tcggagcaaa tagctatgtt tctccacttt atctttatcc
     3661 tacaactaga agtaaaaaat tcctaaaaaa agaaaatcca aattttaacg aagaaaattt
     3721 cacctcaaaa atagaaaatt tcaaagaaag ctttagaact ttcatagatg agctttataa
     3781 agaaaaattc tcaccagaag acatactagg ctatatttat gcggtgcttt ttcataaaat
     3841 ttatagagaa aaatatcttg attttttaaa aattgatttt ccaaaaattc cttttacaaa
     3901 agataaaaat acttttaaaa atttaagcaa actaggctta aaacttgtaa atttacattt
     3961 attaaaaaat gatgagttag attttaatgt aggtgaagcc ttgtttaaag acattaaaaa
     4021 taaaaatttc aaaatacaaa aaatcaaata taacaaagac gtaaaagaac ttttcataaa
     4081 cgaaagcttg tattttacta aagtaagtct tgaaatttat gagtttaaaa taggcggcta
     4141 tgctgtgcta gataaatacc taaaaagcca caaagaagaa gacatagatc ataagcattt
     4201 taccttgatt atacaaactt tagataagac tttaaaaata caagatgaaa tttcaaaaat
     4261 caatcttagc tagtataact agctaatgat taaaagtttt atcttagctt ctataatctc
     4321 ttctacttca tcttttacaa agctttctaa ctcttgtttg tttgtattaa taccattcat
     4381 acttaaatgc cacaaagcat tttctatcgc actttgtttg tctcttttta ccactctagt
     4441 ttcgttaaaa atttcatact cataagggat attttgtgta tttaaaaaac cttgcaaatc
     4501 actttcataa aaacctttaa aatgagtgtt aaaatgctca aatataggat ctaaaaagct
     4561 acttttacgc ctacttgccc agcctaaata cactttttta gaagctaagt ttaaaaaagc
     4621 tttatagtct ttttcatttt gtaaagcagg agacatactt aaaaatgcaa gatcaaattt
     4681 aacattagga ttgttttgca tccaagtttc aaagctcaaa ttttcgcatt ttatattgtt
     4741 aagatttagt tttttagcat cttcttgtaa aatttcaagc atagtatttg cactatctag
     4801 ggctaaaatt tctttagctt ctttagctaa gtgtaaagtc caaaccccag ttccacatcc
     4861 tatatctata atgcttttat tttgaaaaga aatatttaaa ttttgtaaat attcaaaagt
     4921 ttgcttttgt atggtgttta aagtgttttg atatcttgcg taagttttgg cctttttatc
     4981 ccataaattc atatattttc cttgataaaa tatacaaaat catagcataa atttttaaaa
     5041 ttcaagccca aagaaagggc ttgaatgatt aattaaaacc ttttcttctt aacatcttct
     5101 aagatattat tagctatatc acttactgta ctagaaataa tagctgattc attagcaatt
     5161 tcaacattat ctttagtagt ttgatcaatt tgagctacac tatcattgat ttgagtgata
     5221 cctgcagttt gttctttaat actttctgcc atatcattga tagattgaac aagtaaatta
     5281 gtattagctt caatttctga taaagacttt tgagttcttt cagctaactt tctaacttca
     5341 tcagccacaa ccgcaaagcc tctaccatgt tctccagcac gagctgcttc aatagctgca
     5401 tttaaagcta aaagattgat ttgatctgca atatcaccta taatacctgt aacattttta
     5461 atctcttcag attgagtgat aacatcacta gttttaactg aaacattttg catagaagaa
     5521 gtgatctctt ctaaagctgc tgcagtttct tctaaagatt gagcttgaga atttgaagaa
     5581 gtggttaagc tttgaacagc agtttgtaat tttccacttt cattagctaa agcattagca
     5641 aagtctgaac tttgttttag cattttaatg atttcttgtc ctagtgcatt agtagttacc
     5701 tctacagctc cattggcatc ttttacttca gtagtaaagt caagagattt atagctatta
     5761 aatactcttt gaatttcatt catatcagaa cctactctag cttgtaaagc atcaagaagt
     5821 ctatttagaa catttttaag ttcaataagt tgtgggtttc ttggattagc agtaattctt
     5881 gctgttaaat taccaccttc tacaactgat acggtttgaa ctgattcttt aacggcttga
     5941 ttgtcttgtt ctaagcctct tttagtagca agaatgtttt cattgatagc atttgagatt
     6001 tgtccaaatt catcattgct ttttacttct atagtagaaa cattttttgt tttatagttg
     6061 ataaaatcaa agaatgaagt taaacctgtt tggatagctg caagtgggga gaggtatttt
     6121 gatacgatga aataaaggag gatgatgcta agaatgcttg caaaaacaac aatcacagtt
     6181 tgtataaatg caattttata aactggagct tctatttgtt ctattggctc tccaacgcaa
     6241 gcagtataaa ttccagaaac ctttgtgcat acagcaaatc tttcattacc atcttttggt
     6301 ctagtatact caaaaggttc aagatcctct ttagttttag caagatttgc aatagtacta
     6361 atatcataac cttgttgcaa aagagttttg tctgtagaaa caaatacttt attttcttca
     6421 tcaaatacaa aagttctacc tggtaaattt tcaaattcag cttgcaaatc tgccgcaaga
     6481 atatctacag ccaaaacccc tataaattta ccatctttat aaagcggaat agaatatgta
     6541 aagcaaggta aatttgtagt tacatcaata taagatgggg taatataaag tttatttgtt
     6601 ttaactgctt ctatataata ctctcttgtt ctagcatcat aattatcagc ttttccataa
     6661 gttccaaaat ctaaattttt agcatcagag tctggatcgc ttacaacaag ttcgccattt
     6721 ggttgagcaa tataaactgc taagaatctt ccagcatctc taaaattctt taaatctttt
     6781 ccaacataat gcattaaagc atcttgacta tctaactgtt ctataggatg ctttaaaata
     6841 cttttagcta aactttcaag agctaaagaa tttcttgcct taaaagactc tatagaattt
     6901 ttagccgttt taacataatt tatttcagca ttcacaactt catgaaaaat tgcttgcttt
     6961 acaaatataa atgttacaac acctaaaatt atcaaacaca ctactgcgat taaatttgca
     7021 atcagtgaaa ccttcaattt tacacttttc ataatttaag cgctcctttc taatattatt
     7081 ttatagagat atctacataa agttttagaa ttataaatta aaaaatctag atttttactt
     7141 aaatataaaa gtaataaaaa attttattta aataaagctc gttagcatat caaaaaaaat
     7201 aaaattaata taaaattatt ttttatagat gttttaaaac tatttaacaa tatcaaatac
     7261 attttaaggt gtgataaaat tcaggattat taaaagttgg aggaaaagga acgctagctc
     7321 taaattcttt ataggtatta cccgggagtg tgtctatgat ttctatagta taagaaacac
     7381 ttgtattttg cattttagcg ttacggatat ttttatcatt gaaaatttca cctcctactt
     7441 gttgttggtt taatatgcta agtatcaaat agcatttttt gatttcaaat ttagtaagat
     7501 tttgaacttt tccatttact ataacgcttt catgtcttag atctcttgta taggttagtt
     7561 tgctaagatc ggcttgagtg gtgaattgat tgattgtcag aaaaatagaa tatatcaaaa
     7621 gtgcggtaaa aatagtagct atggtataag aaatcaaagc catttctttt tgtttgactt
     7681 ttagaaagat taaaatacaa atcaaggcaa agcaaataag taaaatgata aaaactataa
     7741 tatgaaaaat tgtaaaatgc attaaaaaca ctccgaaact aagcgtatgg tatagttatt
     7801 ttcatagtta aaattttcaa aagcaattct ttgaaattgg gttgcgtttt tctttagatc
     7861 tttaatttct ctactttttt gtctaaaagg gataaatttc tttttatatt cttctatgat
     7921 attatcatta ggtattttat ctgcaaaaat tttagctgta attttacatt ctttaaaat
//
LOCUS       DAQSLY010000073         7809 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.073, whole genome shotgun sequence.
ACCESSION   DAQSLY010000073 DAQSLY010000000
VERSION     DAQSLY010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7809
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.073"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            11..3487
                     /locus_tag="R2H98_001247"
     CDS             11..3487
                     /locus_tag="R2H98_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011115149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEE9024121.1"
                     /translation="MPFLLIAFINAFVDLGHKIIIQNTIYKAYEGSEQLFLNAIVNAL
                     ILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSGAFWMAFIFTFIM
                     GAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALFSLSFESLYSSMY
                     NQTDEILKEVAPLGIVLILFSCIEVFYAWRLPKLKQTNKDLVFNKKDYIRGKLLINNL
                     KLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYVQISLAFSGIGVI
                     LGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLFFFFGFCGALFII
                     PLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEINVIYLFYFIALVT
                     FIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALLLGNHISFIDWAV
                     VQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLELIAKHIKEGNLVC
                     LFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSAFSRSDEEFSARN
                     RTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHTIARAWIDTAKKN
                     LNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSYAPKEEAIGILLP
                     ASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTSKTFLEKLANKGI
                     NLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIFTPSKNNLAIAVI
                     LFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPFHAFGLTVTTFLP
                     LLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKKLDALMFESLRIV
                     VSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDVDYWLIHRANKEG
                     SVGMPLPGTAVRIVNPNNYENLKANEDGLILIGGHQVMVGYLNDKEKTDEVVKEIDGI
                     RWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKFIDTEVVKFCATS
                     LEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIEKIPLLGSGKVDL
                     KKVKELAKNLAI"
     gene            complement(3495..4406)
                     /locus_tag="R2H98_001248"
     CDS             complement(3495..4406)
                     /locus_tag="R2H98_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEE9024122.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(4603..4688)
                     /locus_tag="R2H98_001249"
     tRNA            complement(4603..4688)
                     /locus_tag="R2H98_001249"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4652..4654),aa:Leu,seq:gag)
     gene            complement(4724..5062)
                     /locus_tag="R2H98_001250"
     CDS             complement(4724..5062)
                     /locus_tag="R2H98_001250"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEE9024123.1"
                     /translation="MKKVLFLLLACAAVAFAAEINAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            5296..6630
                     /locus_tag="R2H98_001251"
     CDS             5296..6630
                     /locus_tag="R2H98_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEE9024124.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
     gene            6643..>7809
                     /locus_tag="R2H98_001252"
     CDS             6643..>7809
                     /locus_tag="R2H98_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEE9024125.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFILSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIIFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAISMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLP"
BASE COUNT         2525 a         1022 c         1315 g         2947 t
ORIGIN      
        1 ttacggatta attccttttt tacttatagc attcatcaat gcttttgtgg atttgggaca
       61 taaaattatt attcaaaata ctatttataa ggcctatgaa ggaagtgagc agttattttt
      121 aaatgctata gttaatgctt tgattttact tccttttatt cttatgcttt ctccttcggg
      181 ttttttagcg gataaatatc caaaaaatat tgtaatgaaa atttcagcaa ttttcaatgt
      241 tatactcact ttaataattt gcatttgtta ctatagcggt gctttttgga tggcttttat
      301 ttttactttt ataatgggag cacaagcagc gatttattca ccaagtaaat acggttttat
      361 taaagaactc gtgggaaaag actttcttgc tatgggtaat ggtgtaatta atgcggtaag
      421 cattgtggca atcttagcgg gaatggcttt attttcttta agctttgaaa gtctttatag
      481 ttctatgtat aatcaaacag atgaaatttt aaaagaagta gcgcctttag gaattgtgct
      541 aattttattt tcttgtatcg aagtatttta tgcgtggcgt ttacctaagc tcaaacaaac
      601 aaataaagat ttagttttta ataaaaaaga ctatattcgt ggaaaacttc taataaataa
      661 tcttaagctt gtttttaaaa ataaaactat ttggctttgc ataattggaa tttcattttt
      721 ttgggctata tctcaacttt atcttgtcag ctttcctgtc tttgctaaaa atgaactttt
      781 catagaaaat actttttatg tgcaaatttc actcgctttt tctggtatag gagtgatttt
      841 aggctcttta gtagctggta aattttcaaa aaattatata gaacttggat ttattccact
      901 tggtgcattg ggtatgtttt taatggcttt tttaatgcct tattttataa gtttattaag
      961 ttatagtttt ttatttttct tttttggatt ttgcggagcc ctttttatca ttcctttaaa
     1021 tactttaatc caatttcatg ctaaagaaaa tgaattagga caaattcttg caggaaataa
     1081 tttttttcaa aatattgcca tgttgggatt tttgctcttg gcaactttat ttgtaaaatt
     1141 tgaaatcaat gtgatttatt tgttttattt tattgctttg gtaaccttta taggaagttt
     1201 ttacatactt ttaaaactcc ccttttcttt agtgcgtata cttttaagca tagctttttt
     1261 acaacgatac cgtttacttg tggaaggttt tgaaaatata ccagaaaaag gtggagcttt
     1321 acttttgggt aatcatattt cttttattga ttgggctgtt gtacaaatgg caattccaag
     1381 aaaaatttat tttgttatgg aaagaagtat ttattctaaa tggtatatta aaatttttct
     1441 tgataaattt ggtattattc ctgtatcaag tacaggaagt aagacgagtt tagaactgat
     1501 agcaaagcat attaaagaag gtaatttagt ttgcttattt cctgaaggta cactttcgcg
     1561 acatgggcaa ttaaatgaat ttaaagcagg atttgaatta gcttgtgaat gtttaagtga
     1621 agatgatgga aaaattattc ctttttatat aagagggctt tggggtagcg ctttttcaag
     1681 aagtgatgaa gaattttcag caagaaaccg cactttaaat aaaagaaaaa ttgctatagc
     1741 ttttggtaaa gctatgcctt tgcattctaa aaaagatgaa gttaaagcta aagtttttga
     1801 actttctttt atggcttgga aatcacaatg cgaagctatg catactatag caagagcttg
     1861 gatagataca gctaaaaaaa atctaaatca aatagctatt atcgatacac tagctggaga
     1921 tatttcttat agaaaaatgt tgactcttag tttatttctt aattttttta ttaaaagaaa
     1981 atccaaagaa ttaaacatta accctcagcg tggaagttac gctcctaaag aggaagctat
     2041 aggaatttta ctacctgctt cttttgcaag ttctttaacc aatctatctg ttttaatcgc
     2101 agaaaaaatt gcagtaaatc ttaatttcac tgctggagaa aaagctctaa aagcagctat
     2161 aaaaaatgcg caaatttcac aaatttatac ttctaaaact tttttagaaa aattagcaaa
     2221 taaaggtata aacctaaatt tcgatacaaa tatacattta atttattttg aagatattgt
     2281 agaagatttt aaaatgcaaa aaactaaaat ttttagcatg atgctagcag ttagtattat
     2341 acctagtttt atactcaaaa gcatcttcac tccttcaaaa aacaatcttg ccatcgcagt
     2401 tattttattt agtagtggaa gtgaaggttc tccaaaaggt gttatgctca ataaccgtaa
     2461 tattttaagc aatatagcac aaatttctga tgtgctttgc acaagaaata atgatgtcat
     2521 tctctcatct ttaccacctt ttcatgcttt tggacttacc gtaactacat ttttgccttt
     2581 gcttgaaggt attaaaagca tcactttttc agatccaacc gatgccttag gggttgccaa
     2641 agctgttgct aaaaataatg tcactattat gtgtggaact tcaacctttt taggaattta
     2701 tgcaagaaat aaaaagcttg atgctttaat gtttgaaagt ttaagaatag ttgtatcggg
     2761 cgctgaaaaa ctaaaaaatg aagtaagaac tacttttgaa atgaagttta aaaaaagcat
     2821 ttttgaaggt tacggggcta cggaaaccac gcctgtggcg agtgtaaatt tgccaaatca
     2881 ttttgatgtg gattattggc ttatacatcg tgccaataaa gaaggaagcg taggaatgcc
     2941 tctacctgga actgcggtac gtattgttaa tccaaataat tatgaaaatt taaaagcaaa
     3001 tgaagatgga ctcatactta taggcggtca tcaagttatg gtaggctatc ttaatgacaa
     3061 agaaaaaacc gatgaagtgg ttaaagaaat tgatggcata agatggtaca acacgggaga
     3121 taagggacat ttggatgaag atggtttttt atatattgtc gatcgttatt ctcgctttgc
     3181 aaaaattggc ggagagatga tttctttggg tgcaatagaa gaagaaattg ccaaatttat
     3241 agacactgaa gtggttaaat tttgtgccac atctttagaa gatgagaaaa aaggggaaca
     3301 aattgtttta ctcatagaat gcaataatga aatttttgaa ggagtatgtg aggctataaa
     3361 aaattctaat atacctacac tttttaaacc tagatattat tttcaaatag aaaaaattcc
     3421 cctcctaggt tcaggaaaag ttgatcttaa aaaagttaaa gaattagcta aaaatttagc
     3481 catataattt gagcttataa caaagtccaa attaaaattg gcatagaaac aaaagcaaaa
     3541 agaactccaa aggctacagc acttacggct aaattactat ctagtttagc tttcattacc
     3601 atagctcctg ctaaagtcat agtaggagct gcactttcta taatagcaac gatggtagaa
     3661 tcttttaatt ccaaattaaa tatttttaaa caaaatacaa aaaataaagg agctaaaatc
     3721 attttagcaa agatgacaac tattgtaggt ttgtaagagg ttttaatcgc cataaagcca
     3781 agtcctaaac ctatagcaaa aagtgcaaca ggggttgcag aggcaccaaa taaacgaata
     3841 ggagagaaaa taaattcagg taaagtaatc aatttacaca aaaaaccaaa aagcaaagct
     3901 aaaaaaggtg gaaaactaag aattttttta acattagcaa gcaaactgac tttttctcca
     3961 tttcccaaag aaagtataaa aggtccaaaa agtgatatag gtaaagttgt ggctaaagca
     4021 tcgtaaaata taacttcagc gctaaattgt gggtcattaa atataccagc aacaataggc
     4081 atacccacaa atatagtatt tccaaaacaa gaaagcaaaa acatactgac taaagttact
     4141 ttagaaaaat gaaaaacttt tccaataaga atagcaaaaa aagctgctag tatacagcta
     4201 aacaatccaa taaaaataaa aataatcaat gaaaaatcaa aatttaaatg atatgcttta
     4261 tcgaaaatca aacaaggtaa agcaaaaata atagcaaaat ctaaaaaagt cctagcttgt
     4321 ttttgcttca aaacgccaat tcttttggca aaatatccgc ctgcaagtaa aataaaaatt
     4381 gtaaataatg gtataaaaac aaacattgag taatcctttt taagggatgg tttttgaaaa
     4441 cggatagaat tatattcttt atacttaaaa aaaatcttaa tattttttaa gttttttaaa
     4501 aaaaccaata ttttttattt tttgtaactt taagaaattg taagttgaaa tttgattttg
     4561 aatagttagt attttaagtt gaatgattat aattttaaat aatggtgcgg ttagcgagat
     4621 ttgaactcgc acacgcggag cgcaccaccc cctcaagatg gcgtgtctac caattccacc
     4681 ataaccgcat agaaaaaagc ccaaaaaagg gctttaataa gttttattgt aaaactataa
     4741 aaggatttgc gtaaagtgct attagcgcga taacaagagc atagataact tgtgcttcga
     4801 tcatcgctaa agcgataaac atagttgtca ttaattttgg cccaagacca gggtttctag
     4861 ctgttcctgc aattgttgcc gctgcagtat tacccatacc gatagcacca ccaagtgctg
     4921 caacaccaag acctaggcct gctgcaagaa ctgaaaatgc tttaatccat acattaatag
     4981 cttcttgctc tactggagca ttaatttcag ctgcaaaagc tactgctgca catgctaata
     5041 ataaaaaaag aacttttttc attatcttaa cctttctata aaaaaaattt ttttcaattt
     5101 ttaaatcagt tcggcttgcg tatccctact taagacttaa aaataaatcc gaattataac
     5161 caaaggtatc tttattttta ttgaaattta caaaaattca catttttgat ttaaatttga
     5221 ttgttttcaa taaagcttaa aagttttttt gctttaataa tattttaaaa taatttttaa
     5281 gttaaggttg taacattgag ttctaaattt tcaaaaatag gtttcatttt agcggtagca
     5341 ggttcagcag tgggtttggg taatgcttgg aaatttccaa cactagtagg tcaaagtggt
     5401 ggatctgctt ttatcttgct ttatataatt cttactttgg gtgtaggttt tgtgatattt
     5461 ttagctgagc ttagcatagg aaaaattagt gaaaaagatc cggttaatgc ctatgaaaag
     5521 ttagcacctt caaataaaaa agcttggtct tatgttggtt ttactatggt gggggcgatt
     5581 ttaatagttt ctttttatac cttggtgatt ggctggatag ttaaatatgt gtttttaagt
     5641 atcactggaa atttgcctat ggatctagaa gtaagtaaag cacagtttgg attttttata
     5701 agtgaggatt ttttaagtca gtttatttgt tttactttgg tttttttatg tgttttttat
     5761 attgtttcta aaggtgttaa gaatgggatt gaaaagttaa atgtttggat gatgccttca
     5821 ttgtttattt tacttatttt gatgcttgtt tatgctatta gcaaagatgg ttttataatg
     5881 gcggttaaat ttctttttgt acctgatttt tccaaaatca acacttcaaa cgttcttgaa
     5941 gccttaggac ttgctttttt tagtctttct ttgggcgttg gaacgattat tacttattct
     6001 gctagtctgc ctgataaaac taattttatt accagtactt taaatattat ttttatcaat
     6061 cttttagttg gtttattaat gggtttggtt gtttttactt ttatctttga atttggttac
     6121 aatcctaatc agcaaggacc aggacttgtt tttatttcct tagctacttt atttgaaaaa
     6181 attggagtga ttggttgtat ttttggagca gcgtttttta tttctttaat ctttgctggt
     6241 attacttcag ctgtttcaat gatagagcct ttcacttttt accttattaa tacttttggt
     6301 atgagccgta aaaaagcttt gattttaata ggaattgttg tttatatttt aggaatgttg
     6361 tgtattttat cttctttaaa aagtactcag tttggatttt ttggaatgag tttttttgat
     6421 ttgcttgata gtgtttcaag caaggttatt atgcctttag gtggaatttt ggcagctatt
     6481 tttgtgggat ttgtgatgaa aaaagaagct ttaaaaattt tatttaaacc ttatatgagg
     6541 ggtatatttt ttgaactttg gtatgtgttt ttgagattta tttccccttt ggctgttgtt
     6601 atagttatga tagccgcttt tttaaagtga gtttgaaaaa taatgagaac atatttttca
     6661 aaaattggtt ttgtattggc tgttgctggt ggagccgttg gtttaggtaa tgcttggaaa
     6721 tttccaactt taagcgcaga aaatggtggt tttgtttttg tgcttttata tttgtttttt
     6781 actttaacta taggatttag tatttttttg gctgaagtgg ctatgggacg tttaagtaaa
     6841 agtgatcttg caaatgctta ttcaaatctt gccataaaat atggtaatag atggcgatat
     6901 ggcggcgttt ttatgttagg tggtattttt atcctctctt tttatctagt tatcatggga
     6961 tgggttttaa aatatactgt agtgagtctt tattatcttc ctaaaacttt agatgaagca
     7021 gcaagtaatt ttcagaattt aattactaca aatttgacaa gttctgtttt tttcttcact
     7081 ttatcttttt ttcttacttt attgatagta tctaaaggtt taatcaaagg gattgaaaaa
     7141 ttaaacgttg ttataatgcc tagcttattt ttaatgcttg tttttatgtt gttttattgc
     7201 atgggattta agcaaggttt tgcaaatgct ttttcttatt tattttatcc cgatttttca
     7261 cattttaaat tcagctctat tgccgaagct ttagggcttg cattttttac cttatgcttg
     7321 ggaataggtt gtatagttac atattcatcg gccttggata aaaaaacaaa ttttataaaa
     7381 agttcagtgt atattgtttt gattaattta ttgatttctt ttattatggg acttattgtt
     7441 tttactttta tctttgaatt tggagccgat ccgcatactc aaggagcagg aattattttt
     7501 gtatccttga tgagtttgtt taatcaactt ggagctttag gctatatttt tgcattttgt
     7561 tttttcttag cacttttttt tgctggtatt acttcagcta tttcaatgat agagccttta
     7621 actttttata tgattaataa ctatcaaatt tctcgtgtta aagctctatt tttaataggt
     7681 ttatttgttt ttgtttttgg aatttgttgt atcttgtcat taaatttaaa ttttttttct
     7741 atgtttagtt tttttggcaa agattttttt actttattag ataaattaac ttcaaatttt
     7801 ttacttcca
//
LOCUS       DAQSLY010000074         7700 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.074, whole genome shotgun sequence.
ACCESSION   DAQSLY010000074 DAQSLY010000000
VERSION     DAQSLY010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7700
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.074"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..325
                     /locus_tag="R2H98_001253"
     CDS             <1..325
                     /locus_tag="R2H98_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEE9024126.1"
                     /translation="QKLKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKL
                     GLNTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVN
                     LLISE"
     gene            330..2126
                     /gene="glmS"
                     /locus_tag="R2H98_001254"
     CDS             330..2126
                     /gene="glmS"
                     /locus_tag="R2H98_001254"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEE9024127.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFELYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2129..5254
                     /locus_tag="R2H98_001255"
     CDS             2129..5254
                     /locus_tag="R2H98_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEE9024128.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            5310..6701
                     /gene="fumC"
                     /locus_tag="R2H98_001256"
     CDS             5310..6701
                     /gene="fumC"
                     /locus_tag="R2H98_001256"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEE9024129.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
     gene            complement(6731..>7700)
                     /locus_tag="R2H98_001257"
     CDS             complement(6731..>7700)
                     /locus_tag="R2H98_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEE9024130.1"
                     /translation="FLLVIIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLL
                     FFAPFVYAMIELAKALKNFDINLVTQTLDYVKNYQFTLPESFNFLEPKIKEFLASIDL
                     NSISKQILSYASSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKELD
                     DVLSEVGNVMAVVLYSMVIVAIFQGALFGLITIFYGYDGILMGVIFAVSSLIPAIGGA
                     LIYVPVSLYEFASNNLNSALVIFIYSIIVISFIADTLIKPLIIKWINKKLVKTPTKIN
                     ELLIFLAMIAGISTFGFWGIILGPAILTFFVSTLRMYVILKDKNLI"
BASE COUNT         2776 a         1010 c         1405 g         2509 t
ORIGIN      
        1 gcaaaaacta aaactttgcg agcttttaaa ttcaaatctt tctggtttta atttgaaaaa
       61 aattaaaaag ccaatcatta aaaaagatga gttaaaatta gacttaaact attctaaaat
      121 gtatgccaaa ttaggtctta atacgaaaga tcagcagggt ttaatggcgt atttgatgaa
      181 tgtttttaat gaacttgaac ttgttttatg tgcagcaaaa attcaaacca taagacaaag
      241 gacgcgtaat atttttattt ttcaaaagaa tgaaaaatta gaacatagcg agcaaaagtt
      301 agttaattta ttaataagtg agtaaaaaaa tgtgtggaat cgtaggttat ataggaaata
      361 atgaaaaaaa acaaattata ctaaatggac ttaaagaatt ggaatatcgt ggctatgata
      421 gtgcgggtat ggcagtgatg caagaaggag agctcagttt ttttaaagct gtaggaaagc
      481 ttgaaaattt ggcgaataaa tgcacggatt ttgaaagtca aggttatggt tttgctatag
      541 gtcatacaag atgggcaact catggtaagc ctactgaaat caacgcacat cctcatttag
      601 gacagtattc ttgtgtgatt cacaatggta ttatagaaaa ttataaagaa atcaaagata
      661 aacttgaaaa agaaggcgtg agttttttaa gtcaaaccga tacagaagtt attgtccagc
      721 tttttgaatt atatgcaaga aatttgggag tttttgaagc ttggcaaaaa accatcaaag
      781 aacttcgcgg tgcttttgct actttgttag taacaaaaaa agatcccaat catgtgtatt
      841 ttgcaaaaaa tgctgctcct ttgattatcg gtaaaaatgc aaataaagaa tggtattttt
      901 cttcaggtga tgcgcctttg ataggaagtt gtgatgaggt aatgtatctt gaagatttaa
      961 gcttgggata cgcgagtaaa gatgagcttg tcgtttatga aaatgatatt ttaaaatcac
     1021 tttgtttttc taagctttca ggcgataagg cttatgcaaa aaaagacggc tttcgttttt
     1081 ttatggaaaa agaaatttat gaacaaagtc gcgtgatgag tgaagtttta atggggcgta
     1141 ttcaaggcga tgaagtcgtt tttgatgagc taaacaatga agatttaagt caagtagatg
     1201 aaatcacgct ttgtgcttgt ggaacaagct atcatgctgc aatggcaagt gcttatttgt
     1261 ttgaaagaat tgctaaagtt aaagctaaag tagaaattgc aagtgaattt cgataccgtg
     1321 aagcaattat aaaaaaagat tctttattta tcgttatttc tcaaagtgga gaaacagcag
     1381 acactttaga ggctttaaag attgcaaaag agcagggtgc taagactttt gcaatttgca
     1441 atgtggataa ttctaatata gtgcgtttag cacatctaag tcttttaact cgtgcgggca
     1501 tagaaaaagg agttgcttca actaaagctt ttgctactca ggttttaaca ctttggatgc
     1561 ttgctatttt tatggcacaa aaaagaaatt taaatgtttc tgctgaaatt aaagcacttt
     1621 tgcatactcc aaattgcgtg agtgtaaaac aggctttaca tgaaaaaatt catcgtttat
     1681 ccaagcgtta tttagatgga catggctttt tctttatagg cagagatgtg ttttatcctt
     1741 tggctttaga aggagctttg aaacttaaag aattatctta tcttcacgct gagggttatc
     1801 ctgcaggaga gatgaaacat ggccctattg ctttggctga ttctaagctt tatactatag
     1861 ctttaatgcc aaagcacatg ctttatgaaa aaacaaaatc aaatgttgaa gagcttattg
     1921 ctagggattc tacagtgctt agcatttcac ctttagaatt tgatttaagt gatgatttta
     1981 taaaaaccaa tgagcaagat cattatatgt gtgaattttt tgaaatgatg gtcattactc
     2041 aacttttggc gatggaaatt tccataagac ttggcaatga tgtggatatg ccaagaaatt
     2101 tggctaaaag cgtaacggta gaatagaaat gaaaaaattt ttttgtttaa ctttagtttg
     2161 taaacttttt gctttaagcg aatttgaact tcatcatatt gataaagtac ataagctagg
     2221 gtatagtgga gatactatta taataggtgt agccgatgat gcttttaatc aagatcatat
     2281 tagtttaaag gataagattt taaagtctac ttatcctact gatacagctg ggaaacagct
     2341 tatacctgat ttgaaaaaat caacacacgg aagtcatgta gcaggtatag ctgttggagc
     2401 aaagataggc gatagcaaac cttatggagt ggcttatggg gcaaaatttt atggagctgg
     2461 ggtgtttcca aatggctctt acactcaaat tcctgatatt tataattttt tcaaagatgt
     2521 gagtattatt aataatagct ggggtattaa tttttatcct tattttaatc ttaaggcttc
     2581 aaattctgga ttagtagatt gtactcaaac taatcaaggg acaagctata atatctgtaa
     2641 tactcctttg gaatatgtta tgaaagcaga taaggttgct aatgatatga tgaggcttag
     2701 caaggacaag ggagtattaa atgtatttgc tgctggtaat gaaggaattc ttagccctgc
     2761 tttgcatgcg attttaccaa gttatgatga atctttaaga gcttggttgg ctgttggagc
     2821 tttggatgca aatgagatta ctttagaatc agatgggact ttaataatta aaagtcaagg
     2881 tttggctgat tttagtaatg gttttaaggg agctacgaat ttttctttag ttgctgctgg
     2941 agtaaatatt aataatgttg attcaagcac taatgataag tttacaaaaa aaagtggaac
     3001 ttctatggca gcacctatgg taagtggaac agcggcactg gtcaagcaaa atttcccctt
     3061 tttggatggt aagcaaattg ctgatatact gttaagtaca gcaaataaaa attataaggc
     3121 tccaaaattt actgttaaac aagtaaccga tggaacaaat caacctaaat ttcttattgt
     3181 gtatatttcg caagatccgc ctaggataga agatgaaata aaacgggatt taaaacagct
     3241 ttacaatgga atacaagttc aagttaatgg acaatggatt gattatagtg attatatttg
     3301 ggataataga gatagtgcgc agtcacaaaa acttaatact tctactatta gttctattaa
     3361 tggagtagtt agagttgaga aagaagaatt atttggacaa ggaattttag atgcacaaaa
     3421 ggcgttaaaa ggactgagta ttttagatgc aaacagactc agtgatcagg atgtattaaa
     3481 atatgagcaa gaacctaata cagcttatta tactataaac actgcaggtt atgatgctga
     3541 attttctaat gatattagtc aaagaaaatg ggatgaaagt actcatttat caagtgctat
     3601 taataaacct acacatttag ctaatcttaa cataggatta tctaaagaag gtgaaggtat
     3661 tttgattatc agtggtcaaa atacttatga gggtgcaact ttaatcaaac aaggagaatt
     3721 aaagcttaaa ggaaaagtta aaaataatgc ttatgtagaa caaaaagcaa tattaagcgg
     3781 taatggtatt gtagggcaaa atttaaacaa taaaggcata gttagacctg gaaatgaaga
     3841 tttgaatgat ttaaccgtgc aaggaactta tactcaagaa ggagttgact ctaaattgca
     3901 acttgatttt ggtaattata aaaattctaa actgattgca aaaacttatg atattaagag
     3961 cgggaattta gaatatattc ctttacctaa atactatatc ttaaataagc cagtgaaaat
     4021 taatttagga gatttggaaa aaagtttatc atcttttaat catgttttga tacaaaatac
     4081 ctatgcttta aattttgatt ttgttttaag tgatgattta gtgagtatta ataaaacctt
     4141 aataaaacct aatttaaagc caaatgctta cgaaattcct aatacaagct tgggaaatgc
     4201 tttaagacaa ttgcgatcta gggcagactt gagtcagact tatcaggaat tttttgcttc
     4261 tttagataat ggaatagatg taaagactaa attaaataga atagaaggtt cagggtattt
     4321 aagcactttt agtaatcata atcaatctaa tttaatgcaa aataatatgt tatttaccct
     4381 tcatcctctt aatattaata attttgcaca aaacaataat atcttacttg ctagtactta
     4441 tttacctaga atttttagca atgaagaata tttttggcat cttactccaa gttataaata
     4501 ctataaagat aaagattttt caggtcaaaa aacaggtgct aatatctctt taggagaaaa
     4561 tttctcatca ggctttttag cttatgcttt atctctttct agcgctaaat ttaattttaa
     4621 taatggtagt gatttgaaga gttataacat ggatttattg cttaattata accatgattt
     4681 agattttata aaaatattaa gtggattagg tataggtgta ggatttaata ctcttaatcg
     4741 ttttgtagta gagcagccaa ttgaaggcaa atataaaaca ttgcaaactt cagcccagct
     4801 tggtgtaact aaagatatta ttttaggtca agattttatt tttaatcctt taatgtattt
     4861 tacacatagt tttttttatc aagaagattt taaagaaaat aaaagtcctt ttgctaaaaa
     4921 ttatgaaagt ttaaaacatc atagcataaa tgcaaattta ggttttaatc ttgctaaaaa
     4981 tatagagcaa gatgattatc aagcttcttt ttctactttt gtaatttttg aaaaaagaat
     5041 ttatggaaga actttagaaa ataaggctag ttttgttgat tttcctattg cttttattca
     5101 aaaatataaa ttaaaagata atattttaag tcaaggtttt aattcagaat ttttatataa
     5161 aaacaatgta ttttggcagt ttatgttaat gaatagattt tctcataatg cctatgaatt
     5221 gcatttaatg agttcagtag gaaaacgttt ttgaaagtat ttattttttt agcttataat
     5281 aaataaaatt ttaatcaaag gaaaaaatta tggaatacag agttgaacat gataccatgg
     5341 gtgaagttaa ggtcccaaat gacaaatatt ggggagctca aactgaaaga agttttgaaa
     5401 atttcaaaat cggttgcgag aaaatgccaa aggttttaat ctatgctttt gcaaatctta
     5461 aaaaatcttt agctttggtc aataacaaac ttggcaaact tgatgatgct aagaaaaatg
     5521 ctatagttca agcttgcgat gagattatcg caggtaaatt tgatgataat tttccacttg
     5581 cgatttggca aacaggttca ggcacacaaa gcaatatgaa tatgaatgaa gttattgcaa
     5641 atcgtgccac tgaaatcatg ggcggggatt ttcgcaaaga aaagcttgta catccaaatg
     5701 atcatgttaa tatgagtcaa agttcaaatg atacttttcc aacagctatg agtattgttg
     5761 cggttgagca agtagagaaa aagcttatcc ctgcgcttga tgagcttatt gcaacttttg
     5821 aaaaaaaagt aaaagaattt gatagtatta tcaagatagg acgcacgcat ttacaagatg
     5881 ctactccact tactctagca caagaattta gtggatatct ttctatgctt ttgcattcaa
     5941 aagagcaaat catcgcttct ttaccaactt taagagaact tgccatagga ggaaccgcag
     6001 taggaacagg gcttaatgcg catccagaat taagccaaaa agtaagtgaa gagctaactc
     6061 aacttatagg tacgaaattt gtttcaagtc caaataaatt tcatgcttta acaagtcatg
     6121 atgcgatcaa ttttactcat ggagctatga agggtttggc tgcaaattta atgaaaattg
     6181 caaatgatat aagatggtta gcttcaggcc caagatgcgg tcttggtgag cttatcatcc
     6241 ctgaaaatga gccaggaagt tcgattatgc caggtaaggt aaatcctacc cagtgtgaag
     6301 ctgttactat ggttgctgta caagtgatgg gaaatgatgc agctatcgga tttgcagcaa
     6361 gtcaaggaaa ttttgaactt aatgtgttta agcctgtgat tatttataat ttcttgcaaa
     6421 gtcttgattt gttagctgat tctatgcatt cattcaatat ccattgtgct gtaggcatag
     6481 aaccaaatcg tgcaaaaatc gatcataatc ttcataattc tttaatgcta gttaccgctc
     6541 taaacccata cataggttat gaaaacgctg ctaaagtagc caaaaatgcc cataaaaaag
     6601 gtatttcttt aaaagaaagc gcaatggagc ttggtttggt tagcgaagaa gatttcaata
     6661 aatttgttga tcctactaaa atgataggcc caaaagccta gaacataaaa cttgcctttt
     6721 ttaaggcaag ttaaattaaa ttcttatctt ttaaaatcac atacattctt aaagttgata
     6781 caaaaaaagt taaaatcgca ggacctagta taatacccca aaaaccaaag gttgaaattc
     6841 ctgctatcat ggccaagaaa attaaaagtt cgttgatttt ggttggggtt tttacaagtt
     6901 ttttgttgat ccatttgatg attaaaggtt tgattaaagt atctgctata aaagaaatta
     6961 caattataga ataaataaaa ataacaagag ctgagttaag attgtttgag gcaaattcat
     7021 aaagacttac aggcacataa attaaagctc ctcctatagc aggtatgaga gaacttacag
     7081 caaaaattac tcccattaaa attccatcat aaccataaaa tattgtgatt aaaccaaaaa
     7141 gtgcaccttg aaatattgct acaattacca tagagtaaag cacaacagcc ataacattac
     7201 ccacttcgct taaaacatca tcgagttctt ttttatcaat aggaatgatg gatttaagat
     7261 agataacaag ttctgttcca tatagatttg caaagaaata aaacacacaa attaaaacca
     7321 tatctataag aaatttagcc cctgattttg taaaacttga agcataactt agaatttgtt
     7381 tagaaatact atttaaatct atagaagcta aaaattcttt aattttaggt tctaaaaaat
     7441 taaagctttc aggcaaggtg aattgatagt ttttgacata atcaagtgtt tgtgtaacta
     7501 aattaatatc aaaattcttt aaagctttgg caagttctat catagcataa acaaaaggtg
     7561 caaagaaaag caaaaccata caagctgttg taagaatgga agctaaaaat ttatgtcctt
     7621 tagtaagatt taaaaatttt gcattgatgt ttgaggtagc taccgccatt aaactagcta
     7681 tgataattac aagtaaaaaa
//
LOCUS       DAQSLY010000075         7693 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.075, whole genome shotgun sequence.
ACCESSION   DAQSLY010000075 DAQSLY010000000
VERSION     DAQSLY010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7693
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.075"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..816)
                     /locus_tag="R2H98_001258"
     CDS             complement(<1..816)
                     /locus_tag="R2H98_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024131.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLA"
     gene            complement(877..1086)
                     /locus_tag="R2H98_001259"
     CDS             complement(877..1086)
                     /locus_tag="R2H98_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEE9024132.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            1253..1672
                     /locus_tag="R2H98_001260"
     CDS             1253..1672
                     /locus_tag="R2H98_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024133.1"
                     /translation="MDFNSVLSNIGDKLPRDGLAAITLKEKFERLSEERKKDVLNQLP
                     MLKLKSPTLVFWVGTFLFGPFGVGRFMIGDMVLGFVRLAFVIIPIIFNIVASKSLQNI
                     AYILVIVNWTIWWIVDMFLVGKKLRKQNYEKIANIIQ"
     gene            1715..1975
                     /locus_tag="R2H98_001261"
     CDS             1715..1975
                     /locus_tag="R2H98_001261"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024134.1"
                     /translation="MSEKYTPFEVEPTLLYEKDTYQIVAGKAYTNKDEQFCIGLKSNG
                     FPINSYLIFPPQLSSDLLKSLLGQDGAKNDEIIEFIKIIMEK"
     gene            1975..2217
                     /locus_tag="R2H98_001262"
     CDS             1975..2217
                     /locus_tag="R2H98_001262"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024135.1"
                     /translation="MKNILLSLMFVFLFTGCFNNKPKCDDEDVKLTLKSILDNDEWVY
                     VEYGLNEQSLRALRINSNGMDIRDLEAALSKIRLGF"
     gene            2235..2507
                     /locus_tag="R2H98_001263"
     CDS             2235..2507
                     /locus_tag="R2H98_001263"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024136.1"
                     /translation="MLDLKDYANEVVYTSFESFITKDSKDKKTSFCMGQLKFTYPQIP
                     NEMREKYSRGTLKGVLFDGGEYETQISYSARFSDDKKQVFVELLDY"
     gene            2631..4208
                     /locus_tag="R2H98_001264"
     CDS             2631..4208
                     /locus_tag="R2H98_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEE9024137.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAIFWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAINPDSGSIHLGATIELGYFPQDASNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            4198..4533
                     /locus_tag="R2H98_001265"
     CDS             4198..4533
                     /locus_tag="R2H98_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024138.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            4610..4993
                     /locus_tag="R2H98_001266"
     CDS             4610..4993
                     /locus_tag="R2H98_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024139.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGNSDFMDILNK
                     ANEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLAQQGANEQSKNNTLLNDLLNAI"
     gene            complement(5037..5621)
                     /locus_tag="R2H98_001267"
     CDS             complement(5037..5621)
                     /locus_tag="R2H98_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEE9024140.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIAEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNITIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            5748..6974
                     /locus_tag="R2H98_001268"
     CDS             5748..6974
                     /locus_tag="R2H98_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024141.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALALKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKYDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            6967..>7693
                     /locus_tag="R2H98_001269"
     CDS             6967..>7693
                     /locus_tag="R2H98_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024142.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSRWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYTYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YAYIPDFKTLKSQFVNIKNKNYEC"
BASE COUNT         2718 a          891 c         1304 g         2780 t
ORIGIN      
        1 agcaagatga tttaaagctt gatttttatc attaaaaatt aaaataaaat cattttctac
       61 gataaaaatt tttgctctaa agcgttttaa aatttttgca atttgtttta aaatgagttt
      121 ggtatagctt tctttggtat cttttagttc attaaaatga agcaaggcaa tgatatagtt
      181 gttttttcct tttgtaaagc gtgtaaggct tttttcattg ggtagctttg ttaaggtgtc
      241 aaaaaaagct aacctataag cgtgatttaa aagataaaaa caaaaaacca aacttgcaaa
      301 ttcaaaatat cttattcctg ttccttcttg gaataaaaac tgaaaatatg cagcaaaaaa
      361 tgcgataaga agataatatt ctttagtttt aaaagttttg ataaaaatga gtattaagcc
      421 gactaaaaaa aataaaaatc ctaattcact cacaggttta aaaaaattta atgtaataaa
      481 atggaattct aaaccagcgc tattgaaagt agtatttcta ggtaaaatga tgcttaaaac
      541 gcctatgaaa ataagggttg taattgaggc gatatttttt ttatttaaaa ttaaaacatg
      601 atgttttcca aggcaaaata gagtaaaaat cataggtaaa aacaaagcca caaataaatt
      661 agcttgaaaa aaacttgtat aaaaataagg cagcttagct cctagtaata ctaaagtcaa
      721 aaagaaaatt tttgaatttt taaagtaaaa ggatagcaca agagctgaaa tttcaaaaat
      781 aaaactcaat gatattaaaa aatctaataa aaacatttca aatccttgat tttaataaaa
      841 gtgataattg tatagaaaaa agcttaaaag cgggttttat ttaaatttag caatttcatc
      901 ttgtatggtt tgttctatat gaagcaattc ttcatgagtt tttttgctat tttctaaaag
      961 ttcatcaaat ttaaagccaa gcataacaat acgatataaa ttgggtttat attttctcca
     1021 attatataaa gtgctaacat caatgtctag ttcatatgcc atatcacgct tgctcttttt
     1081 tgtcattttt taccttaaaa atttagcctt taaaaaattt tacattaaaa tttctttatt
     1141 aaaaacactt gaaatattca atcttttata taaaatatat ttaatatttc aatattaatt
     1201 aagttatagt atggaataat tcgagatatt ttttaatttt caaggagaag ttatggattt
     1261 taattcagtt ctttctaata ttggcgataa gttaccaaga gatggtttag cggcaattac
     1321 gctaaaagaa aaatttgaac gcttaagcga agaaagaaaa aaagatgtgt taaatcaact
     1381 tcctatgctt aaactaaaaa gccctacttt ggtgttttgg gtaggaactt ttttatttgg
     1441 cccttttgga gtagggcgtt ttatgatagg tgatatggtt ttaggttttg tgcgtttagc
     1501 atttgtgatt attccaataa tttttaatat tgttgcaagt aaatctttgc agaacatagc
     1561 atatatatta gtgatagtca attggactat ttggtggatt gtagatatgt ttttagtagg
     1621 taaaaaactt cgcaaacaaa attatgaaaa aattgcaaat atcatacagt gatgattatt
     1681 ttattttaaa accaatgaaa gaatggagat gaaaatgagt gaaaaatata caccttttga
     1741 agtagagcct accttacttt atgagaaaga tacctatcaa attgttgcag gaaaagcata
     1801 cacaaataaa gatgaacaat tttgcatagg cttaaaatca aatggttttc caataaattc
     1861 ttatcttata tttcctccac agcttagctc ggatttacta aaaagtcttt tggggcaaga
     1921 tggtgctaaa aatgatgaaa tcatagaatt tattaaaata ataatggaga aataatgaaa
     1981 aatattttat taagtttgat gtttgttttt ttatttacag gatgttttaa caataagcca
     2041 aaatgcgatg atgaagatgt taagcttaca ctaaaaagta ttttggataa tgatgaatgg
     2101 gtttatgttg aatacggttt aaatgaacaa tccttaaggg cgttaaggat aaattctaat
     2161 ggtatggata taagggattt agaggctgca ttatctaaga tacgcttggg gttttaaggg
     2221 cgcattttaa acctttgctt gatttgaaag attatgccaa tgaagtggtt tatacttctt
     2281 ttgaaagttt tataaccaaa gatagcaagg ataaaaaaac tagtttttgt atgggtcagt
     2341 taaaatttac ttatccacaa atacctaatg aaatgcgaga aaaatattca agaggtactt
     2401 taaaaggagt tttatttgat ggaggggaat acgaaactca aatttcttat agtgctagat
     2461 ttagtgatga taaaaagcaa gtttttgtag aacttttaga ttattaattt attttgacaa
     2521 tgaaatttta ttttcattgt ctatataaaa tttatactta attaatttca agtctttttt
     2581 ttgatacaat ttcttaaaaa tttttataag taaaaaattt aaggaaaatc atggttgaag
     2641 taaaaaatct tactatgcgt tttgcaaatc agcttttatt tgaaaatgtt aatttaaaac
     2701 ttgttcgagg acaaagatac ggacttatcg gtgctaatgg tgcgggaaaa tcgacttttt
     2761 tgaaaattct ttcaggagaa attgagtcga gtagtggtga aatagtattt gatgaaggtt
     2821 taaaaatcgc agttttagga caggatcaat ttgcttttga aaactacacc atcaaagatg
     2881 cagtgatgtg tgcaaataag cgtttatatg aggccttaaa agaaaaagaa aagctttata
     2941 tgagcgagga atttacagat gagatcaatg agcgtttagg tgagcttgag ataataacgg
     3001 ctgaagaaga tccaaattat gattgtgaaa cgcgttgtga aaaaatttta agttctttaa
     3061 agattaaaga ttttgatgct ttgatgagca ccttgcaaag tgcggataaa tttaaagtct
     3121 tactagctca agttttgttt ttgggtgcgg atgtgctttt tttagatgag cctacaaata
     3181 accttgattt agaggcgatt ttttggcttg aaaatgagct tttaagacat gaaggaactt
     3241 tggttgttat ctctcatgat agacattttt taaataaaat ttgcacaagg attttagatg
     3301 tggattttaa acaaattcgt gattttgcgg gaaattacga tgattggtat atggcttcaa
     3361 cgcttttggc aaaacaagct gagcttaaac gtgataaaac cttaaaagaa agagaagaat
     3421 tagaaaattt cattcgccgt tttagcgcaa atgcttctaa ggcaaaacaa gccacaagcc
     3481 gtgctaaggc acttgaaaaa ctagagcttg aagagattaa aatttcaagc cgtagagatc
     3541 ctagcatagt ttttagaacc aatcgtgaaa taggtaatga agttttagaa tttaaaggta
     3601 taggcaaggc ttatgataaa caattgtttt caaatttgga gctaaaaata gaaaaaaatg
     3661 ataaaatcgc tttgatcggg gcaaatggtg tgggcaaaag tactttggca aaaatcatcg
     3721 ccaatgctat aaatccagat agtggatcta tacatcttgg ggcaactata gagcttggat
     3781 attttcctca agatgcaagt aatttaattt gtgaaaattt gaaactttat gaatggctga
     3841 tgagtgaaaa atttaaagat ctagatgaaa tccgcaagtg tttaggtaga atgcttttta
     3901 gtggcagcga tcaagaaaaa atggcagcaa gtttaagtgg gggtgaaaaa catcgtttaa
     3961 tgctttctcg tttaatgcta gagcgtccga atttcttgct tttagacgaa cctgataacc
     4021 atttagatct tgaaagtatt attgcattag gtgaagcttt gtataatttc aaaggtgtag
     4081 tgctttgtat cagccacgat agggagttag tttctgcttt tgctaataga atttggcatt
     4141 tagaaaatgg taagcttaca gattttcgtg gaacttatca agaattttta ggagaaaatg
     4201 atggctaaat ttagaattca atacagcgca ggttttgggc actatacgca aaatcacaag
     4261 ggttttgggc ctacgattta tatagaagaa gtcgtagagt ttgataatgg caaggattat
     4321 tttgattata tagattttta taaaacttat tcaaagagcg atgatactta ttttcatatc
     4381 agttttttag aagatagacc tctaagcgat aaagaaatca cgattcgcaa tgaataccgc
     4441 aaaatgcgtg atgaaaactg taaaaaagcc aaggaagaat ttatagccaa taatgagctt
     4501 gatgtggagc atttgcctac tcatcatgat tgaaaaacat taatttttac ataaaaaaag
     4561 gaatactttt tgcttgtata gtttttgcat attttgaaag gagaaagcta tgcaggtaaa
     4621 ttatagaacg atcagctcgt atgaatacga tgctattagt ggtcagtata aacaggtgga
     4681 taaacaggtt gaagattatt cttcatctgg aaattctgat tttatggata tattaaataa
     4741 ggcgaatgag aagtcaagcg gagatgcttt aaattctagc aatagttttc aaagcaatgc
     4801 gcaaaactca aattcaaatt taagtaatta tgctcaaatg tcaaatgttt acgcttatcg
     4861 ttttagacaa aatgaaggcg agttgtctat gagagctcaa agtgctagcg ttcacaatga
     4921 tcttgcgcaa caaggtgcaa atgaacaaag taagaataat actttgttaa atgatttatt
     4981 gaacgcaatt taatcaaaag ctccattttg gagcttttgt atttacttgc aagaatttat
     5041 aatttctcta tttcaaaagg tgcaaaattt ttacaaaaaa tttcaaattc ttgctcctct
     5101 ttttcattta atttgatatg taatatagct ttgcaatcct taaaatcttt tgtgaaatta
     5161 aaagaataag tttttaaaaa atgttcaaaa cgatttaaat tttttaaatc aatagcaatg
     5221 gttatatttt ttttcaattc aaatgaaagt aaagaagaat tattgatcac ggcatttgcc
     5281 gcatcactat aggctcttac aagtccccct gtaccaagtt ttataccgcc aaaatatctt
     5341 acagtgatta aagccgcatt gataagatca tagcccctta gaacatttaa agttggcatt
     5401 ccagaagttc ctttaggctc tccatcatca cttttatctt ctgcaatttg attaaaatca
     5461 tttaaaacac gataagcata gacaaaatga acggcttttg gatgttcttt ttttagtgtt
     5521 tctattaaaa atttaaaatc tttaaaaggg caaagaaaag ataagaaagt agatttttta
     5581 atatcgattt gtgtttgaaa aatttgatca atagtttgca tttttgcctt ttttgtttaa
     5641 aattatactt ataaaaacta aaatcaattt gatgttaatt tttaagatat ttgatatttg
     5701 tatgatttgc attgatattt taagtttaat tttgtaaaat tttcattatg gaaaaaatca
     5761 aaaattataa acttatcatc attttactta gtcttgattt gttggctttg ctttatggaa
     5821 tttcaacact gagtattagt gctgatgaag ctgatattta ttttggtgag cagggtaaat
     5881 cacttatttt ttcccatagt ttgctttatt atatatctca ttttggaact tttatttttg
     5941 ggcaaaatga ttttggttta aggcttcctt ttttattttt tcatttttta agttgtttgc
     6001 ttttgtattt gctagcttta aaatatacta aaactaaaat tgatgctttt ttttctttat
     6061 tgttatttgt tttattgccg ggtactgttg caagtgcttt actggttaat gccgcatctt
     6121 tggtgatttt tttaaccctt gctatattat gtgcttacga atatgaaaaa aaatggcttt
     6181 tttatatatt attgattata gtattatttg ttgataaatc ttttaatatt ttatttttaa
     6241 cttttttctt ttttgggatt tataaaagaa atgctatttt atttacctta tctcttgttt
     6301 tgtttggagc aagtatcagt ttttatggtt ttgatacagg tggtcgtcca agaggttatt
     6361 ttttagatac tttaggaatt tttgctgcat gtttttctcc tttggttttt gtgtattttt
     6421 tttatactat ttatcgtttg acttttcaga aatataaaaa tttattatgg tttttaatga
     6481 gcgtaacatt tgtattttgt ttgttgcttt ctttaagaca aaaacttttt ttagatgatt
     6541 ttttgccttt ttgtgttatt tgcactcctt tgcttataaa aactttaatg caaagttata
     6601 gggtgagatt accagttttt cgattaaggt ataaaatctt tatagaatgt tctataattt
     6661 ttttgatatt ttgttacttt ttaatcgtcg ctaatcaatt attgtattat tttataaaca
     6721 atccaaatcg tcattttgcc aataattatc attttgctaa agaattggcg ctagcattaa
     6781 aaaaacaaga tgttttagag cttgcaacag ccccaagttt gcaaaaaaga ttgcgatttt
     6841 atggaataaa aaatagcaat aagttttatt taaaagcttt aaaacaagcc gataagtatg
     6901 atatggacaa aaaaattgtt aaagtaaaac ttggaaaata tgaaaaagta tatcagattt
     6961 taaactatga ttaaagcttt cagtttgtta gaatttgtgt ttataattct tattttaggt
     7021 atagttttta atttaggcag tctttactta aaaaaagaca atttactaga aggcgcaata
     7081 caaattctta atgatatcca atatacccaa agtttagcca tgatgcaaga aggtataaga
     7141 gttgatgagt tggctatcgc aaaaagagag tggtttaaaa gtaggtggca gatttatttt
     7201 ataaaatcag ctgccacagg ttatgatcaa acatatacta ttttcttgga taaaaatggc
     7261 gatggaaatg ctaatttagg taaaactgaa atcaatatag atagagaaat tgctgttgat
     7321 gtaatcaatc ataacaaatt aatgaattca ggtcaaagtg gagttattag taaagatgat
     7381 gaaaaaacta cacaaagatt taatcttaca aaaagattcg gaatagaaaa ggttgaattc
     7441 aaaggatctt gttcaggatt tactagatta gtatttgatg aaatgggcag agtatattct
     7501 ccgttaaaaa atgccaatta tacctatgaa aaaactttag caaagaataa ttcagattgc
     7561 attatacgtt tgttatcaaa aaagcatgct ctttgtatcg ttatagatac gcttagtggt
     7621 tatgcttata ttccagattt taaaacactt aaaagtcaat ttgttaatat aaaaaataaa
     7681 aattacgagt gct
//
LOCUS       DAQSLY010000076         7496 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.076, whole genome shotgun sequence.
ACCESSION   DAQSLY010000076 DAQSLY010000000
VERSION     DAQSLY010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7496
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.076"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            1..618
                     /locus_tag="R2H98_001270"
                     /pseudo
     CDS             1..618
                     /locus_tag="R2H98_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
     gene            complement(631..1500)
                     /locus_tag="R2H98_001271"
     CDS             complement(631..1500)
                     /locus_tag="R2H98_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024143.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTNTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGSGASAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLNALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIIDKRV"
     gene            complement(1504..1665)
                     /locus_tag="R2H98_001272"
     CDS             complement(1504..1665)
                     /locus_tag="R2H98_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024144.1"
                     /translation="MLKIILVLSILSSFAFANSCVNYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            1760..2743
                     /locus_tag="R2H98_001273"
     CDS             1760..2743
                     /locus_tag="R2H98_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEE9024145.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVSADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEAGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(2829..3917)
                     /gene="aroC"
                     /locus_tag="R2H98_001274"
     CDS             complement(2829..3917)
                     /gene="aroC"
                     /locus_tag="R2H98_001274"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEE9024146.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGIPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFGICVQSGVFGVGTFV
                     SNLKEKEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFSKQESIDKFGNNLEFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(3917..4591)
                     /locus_tag="R2H98_001275"
     CDS             complement(3917..4591)
                     /locus_tag="R2H98_001275"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEE9024147.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(4578..5018)
                     /gene="rnhA"
                     /locus_tag="R2H98_001276"
     CDS             complement(4578..5018)
                     /gene="rnhA"
                     /locus_tag="R2H98_001276"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEE9024148.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5005..5991)
                     /locus_tag="R2H98_001277"
     CDS             complement(5005..5991)
                     /locus_tag="R2H98_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024149.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6062..>7496
                     /locus_tag="R2H98_001278"
     CDS             6062..>7496
                     /locus_tag="R2H98_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEE9024150.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKIL"
BASE COUNT         2673 a         1316 c          966 g         2541 t
ORIGIN      
        1 ttgctttttg tcatttttta ctcaaatgac ttttttaaaa tggaaattaa aaatgaagat
       61 tctttttctt tagcaataaa acaatttacc caaactaatc caacaaatga gaccaaacca
      121 acagaatcca ttatagaacc tatcaaacca aaacctcagc caaaagttat taaaaaaact
      181 cctgaaaaaa tgcaaaaaaa agataaaaaa aacacctcca cacccaatac caaataaaac
      241 cccaatagca ccaactcaag aagttaaaac ttttgcaaaa acaactgata taaatgtcaa
      301 acctaagatc actcaattaa cacaaggaaa agataatcac cctgtattaa aagaaatcca
      361 aaaagctata caacaagcac aattttatcc aaggcaagca aaaaaatgcg tatgcaagga
      421 actgtaaaag tagaattttt atggaaagaa aacaaaactt tagcagattt aaaaatcata
      481 gaaagctcag gatatgattt attagataaa agtgctttag aaagcataag aaaagcttct
      541 ttaaattttc cacactataa cggagattta agaattacac tacctattat atatgatttt
      601 aaaaccctaa gagggtaaaa ttataatttg ctacactctc ttatctataa tttgtgcttc
      661 ttgattttca attttatttt gaaaatcttt acttaaattc tgacttaatt cttgcaaaga
      721 tttttgcttc agtttttcaa attcttcagg attgctagcc tcaagctttg cctgctcatc
      781 agcacttaaa gcatttaaac ctttttcttg ggctttttga agcaaatctt cgtcttcttt
      841 ttctttgata ttattttcct tatcatcttt tttattgatt ttttgcggat ctatggtttt
      901 catagcacta gctccactac ctgatgcttc tttaatgtcg cttaaaattt ctctcatgct
      961 aggttcttta acatcactat catcaacttt accatcttta tttacatctt tatcaataaa
     1021 aaaatttaat ttttcttcta tatttgcatc atcagatatt ttttcatcgc ttgttttaaa
     1081 gcctaaattt tgcatacttt gttgaagggt atttgtatta aaatttaatt ttacactttg
     1141 ttgtttatta tttaaatttg aatttaaaga accaaaatta tcttttacac tttcaaacca
     1201 atttgaaaca aattggtttg cttcgccatt aagccttata ctaccatcat ttctagcaac
     1261 ataattcgta taagaaccga aatttttttg taaactacta taattttcat cgcttaaatt
     1321 taaagctata agttcacctt gcttattttc aaaaacaacc ttaacaccat cgctatttaa
     1381 actcgaaaga tcttgcacgg gaattttatc ttgatcttct ttttttaata cgctaagctc
     1441 ttttttatca acattattag ttaaagaatg ggttaaacta gcagaagtat cgattttcat
     1501 tatttatcct tttttacatt ttgcaaataa gcctaaacga cacatttttc tctcatgtga
     1561 attttttaaa gaattacact ttttaagttc ttgctcgtag ttaacacaag aatttgcaaa
     1621 agcaaaagaa ctcaaaatgc ttaaaaccaa aattattttt aacactttcc aatccttatt
     1681 ttaaagattt tttagttaaa attatatctt ttataatcga caaaatctta aaaaatttta
     1741 tattcttaga aaggaatcaa tgaaagcatt agctcttttt agcggtgggc ttgatagtat
     1801 gcttgcaatg aaactcatca ctgcacaagg catagaagtt aaagctctaa atatcaacat
     1861 aggttttgga agtacaagcg ataaaagcga aatcatgaaa aagcgtgcag cgatggtaag
     1921 tgcggatttt gaaatgatag atgtaagaaa ttcctatctt caagaagtgc tttttaatcc
     1981 acaatatggc tatggcaaac attttaatcc ttgtatagat tgtcatgctt ttatgtttaa
     2041 aactgctctt gctatgttaa aagaagaaaa tgcaagtttt atcatcacag gagaagtttt
     2101 aggacaacgc cctatgagtc aaagaagtga tgcaatggca aaggttaaaa aacttgctct
     2161 tgatgaagaa gatttaatct tgcgtcctat gtgcgcaaaa aacctacctc taaccaaacc
     2221 tgaaagagaa ggttgggtag atagagaaaa actcgaaggt attagcggaa gaagtcgtaa
     2281 aagacaactt gaacttgcag ctaaatttgg attagaagac tttgaaagcc caggtggagg
     2341 ttgtttgcta actcttgata gttttgctaa aaaaattcga gatttcatag aatttgacaa
     2401 agatatgcag gttaatgacg cacaactttt aaaatatggt cgtcatttaa gattacccaa
     2461 tggagctaaa atgatcatag gtagaaatga acttgaaaat actcttttaa aaggtttaaa
     2521 aactcctaaa tatgaagtaa tagaacttgg agatttaatc ggagcttact ctttggtaga
     2581 tgaaaaaatt tcagaaaaag acttagaact tgccttaaaa atagccctta cctatactaa
     2641 acacgaagca ggaaaaagct atgaacttaa atttaaaaat caagcttata caagcatagc
     2701 ttttgaaaat aaggctgata ttaatcaatt ttttattagt taaagtataa agtatttagc
     2761 aaaacaagcg atatagtatt tgaatctttt caaaatattg caatcaagcc catgaaaatg
     2821 ggcttttttt attttaatcc ataggcattt tttaaattgt ttaaattcgc actcgcattc
     2881 aaaagcaaac aatcagccaa aactaaacgc accatagcac tagctacaac acttcctcta
     2941 acacctacac aaggatcatg cctacctttg agttcaaatt ccaaattatt gccaaattta
     3001 tctatacttt cttgcttgga aaaaatagaa ggagtaggtt taaaataagt ttttaaaata
     3061 agattttctc catttgaaat tcctcctaaa attcctccgc tatgattgct taaaaacttg
     3121 ccatctttta aagcatcatt attacacgat ccgcgcattt tgcttgcatt aataccttcg
     3181 cctatttcaa ctgctttaac agcattaatt cccattaaag catgagctaa tttagagtct
     3241 aacttatcat aaagaacttc tccaagtcct ataagcatac cactaacttt tgtaaaaaca
     3301 gcagcgccta cgctatcttt tgaatttcta gcatttaaaa tttcattttt aaagtcactt
     3361 tctagttttg gatcaaggca aaaaatttca cttttcttag caaattcaaa atcaaattct
     3421 ttttctttca aatttgatac aaaagttcct accccaaaaa caccactttg aacacaaatg
     3481 ccaaattcac gcaaaagcat cgctgcaact gcaccaccag ccactctagc aacactttcc
     3541 ctagcacttg atctaccccc acccctatga tctcttatgc catatttata aaaataagta
     3601 aaatccgcat gagcaggacg aaatagatct tttaaattat cataatcctt agaatgggca
     3661 ttttcattaa aaaccactat agctatggga tgacccgttg tatatccttc aaaaaccccg
     3721 cttaaaacct gagctttatc gctttctttt cttggtgttg caaatttact tccgcctttg
     3781 cgtttatcaa gctcattttg caaaaattct tcatcaaatt taactccagc aggtattcca
     3841 tcaataatac atccaacagc cacaccatga gactcaccaa aacttgtaaa tttcaatctc
     3901 gtaccaaagg tattcactat aaagctccta atttctcaag tgcaattttt gctgccattt
     3961 gctgtgcttc ttttttgctt cctgcaatag ctcttgcaag ttctttacca tcaagcatta
     4021 aagcaatttc aaattgcttt aaatgatcag ggccaaaagc acgcactgtt tcatactgcg
     4081 gagtttgtcc gatttttccc tgtgtaatct cttgtaattt tgttttataa tcttttataa
     4141 gaatttttgc atcaatttga gggaaatttt tttctataag ccttaaagca atagtttttg
     4201 caaactcgaa cccagcttct aaatgtatag cacctataat ggcttctaac gcatctgaaa
     4261 gtatagaagg cttttctttt cctccattgt tttcctcagc aacactcata agaataaaat
     4321 cgcccaaatt taaactattt gcaatttttg caaaagactt ttcattcact aaagctgctc
     4381 taagcttaga taaatctcct tcggcatctt tggcgaattt atgaaaaagg tattcaccta
     4441 caactaaatc aagcacggca tcacctaaaa attccaagcg ttcgttgttg taagattttt
     4501 taaaactttt atgggttaaa gcatgtataa gaagattttt atctttaaat tcataagtta
     4561 aactctgctc tagcttttca atgtttttca tcattttccc ttgcaatttt caaagcagct
     4621 tcacgcgcca atgtatcaca cctttcattt tccaaatgtc cattatgtgc ttttacccaa
     4681 aaagccttaa tcttatgaga ttttgccact ttaatatatt ccttccataa atctatattt
     4741 tttttacctt taaaatcctt ttttatccat ccttctagcc attcattaat actttgaacc
     4801 attaggttag aatctgtaaa aagcgaaatt tcacaaggct cttttaaagc cttcaaagat
     4861 tcaataattg ccattagctc cattctattg ttagtggtat tagcctcagc tccaaaacct
     4921 tccttttgat actccttata acgcaaaata taagcccatc cgccaaaacc tggattatta
     4981 agacatgagc catctgtata aatttcaatg tgtttcattg tttttcactt cataaataat
     5041 tttacaagta ttaaactcat aacaaacagg acagtgataa aaaaacaaag gcataacatt
     5101 tttacactca gaacaacggt atgaaaattc taaccccgca ttaaaagaat tatcttttaa
     5161 aatttttaac attttaaaat tagaattttt aaaaacaaac tgatgcgtat catcatgctt
     5221 tgaaatttta cccaaagcat aaaagaattc taaaaaatct tgattttcta aattaaacgc
     5281 ttcattttct ctataaagca aatcacaaat atcaaaaaaa ttttgcccta aaaacatatg
     5341 atatttttca aaaactaaac gccctaacat aggattatct tctattttaa attctaaaag
     5401 ttttttcttt ttttcttcat cagtgatatt aaaagtacaa agttctaaag ctttgataaa
     5461 atcatgctct ttttgcacat cttcattaag ctcaaaaaga cattctaaaa gttctaaatt
     5521 ttctttataa gaacgaagtt ttaaataaac aatttttaaa agttttaagg cttgtatatt
     5581 tcttggacgc agttttaaag cttgtaataa aacttctttt gcacgctcta aaaatcctgc
     5641 tttaaaataa acttttgcta aagaaaggaa aataaattct ctttcttgtt tatctttaca
     5701 tttttcaaga gcaatcaaat aaatttgagt tgctttttca aattccccac ttttggtaaa
     5761 aatttcggcc aaaaaactta aatttccaaa actcaagcta ctatttctta acaactcttt
     5821 atgagcgtta tccatttcaa atttttttat aaatttttca agcttttgtt cttcatcttt
     5881 gttagcaaat attttccaaa tataatttgc aacagctaca acaaatacta aaatggttaa
     5941 aattataagc cctactaaag ggtctctgta ttctacaaag aaaaaatcca tagtctcgct
     6001 ctaaaaaatt ttatgccaaa ttatagccaa atctttgtat aattttaaca aggtttgtaa
     6061 aatgataact aaagaaagta tagaaaattt atcccaaaga cttaatattg ttgatattat
     6121 agaaaattat attgaagtaa aaaaacaagg ctctagtttt gtatgtatct gtccttttca
     6181 tgcagataaa aacccgtcta tgcatatcaa tcctatcaaa ggtttttatc attgttttgc
     6241 ctgcaaggct ggtggagatg cttttaaatt tgtaatggat tatgaaaaat taagttttgc
     6301 tgatgcagtt gaaaaagttg caagccttag taattttact ttgagttata caaaagaaaa
     6361 acaagaaaat aaaaaagagc taaagtctat actaccaagc ttaaatgcgt attttaaaga
     6421 taatctcaaa caccacaaag aagttttaac ctatctttac cagagagctt taaatgacaa
     6481 agatatagcc aaattcgaat taggttttgc aggagcaagt gaagatagta taagattatt
     6541 gcaaaatcaa aaaattcctt tagaagatgc tatgagtgtt ggagctttaa aaaaagatga
     6601 aaataatgaa ttttacgcaa gttttatatg gcgtatcacc tttccaatct acgatcataa
     6661 agacttattg gtagggtttg gagggcgcac tttaaatccc aatgtaccgg caaagtatgt
     6721 aaattcaccc caaaatatac tttttgataa aagtagaatt ttttatgctt ttaacatcgc
     6781 taaagaaaat atagccaaaa aaaaagaaat aatagtatgt gaaggctaca tggatgcaat
     6841 agcttttcac aaagcagggt ttaacaatgc tgtagcagtt cttggaacag cattaaccga
     6901 acatcatcta cccttaatcc gccgttatga tgcaaaagtg attttatgtt ttgacaatga
     6961 tgaagcagga ttaaaagctg cgacacgatc tgcattttta ttaagcacaa acaaaataga
     7021 cggtaaagtg gcaattttgc aaggcggaaa agatcctgct gagctcgtag caaaaaatga
     7081 aagcacaaaa ctccataata tactcgatga aggaatagag cttggtgaat tttatatcag
     7141 acgcttaata tccactcatt ccataatttc tgctcttgat aaacaaaaag ctttagaaac
     7201 tatacaaaaa ttcaccttta atcttgaacc tttagtggca aattcttaca ctagtctagt
     7261 ttcaaattta ttaaaagtgg atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac
     7321 catacaaacc cctttaattt ctcaaaataa atacaatttt cctaaagaaa aaattcacat
     7381 tgcagaatta gaacttatag cctttttaaa acagcatcca gatatatgta acgattttaa
     7441 gcaaattagt gatagtgttt gttttaaaca taagatttta ttggataaaa ttttag
//
LOCUS       DAQSLY010000077         7354 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.077, whole genome shotgun sequence.
ACCESSION   DAQSLY010000077 DAQSLY010000000
VERSION     DAQSLY010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7354
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.077"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(72..401)
                     /locus_tag="R2H98_001279"
     CDS             complement(72..401)
                     /locus_tag="R2H98_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEE9024151.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(398..1672)
                     /gene="hemL"
                     /locus_tag="R2H98_001280"
     CDS             complement(398..1672)
                     /gene="hemL"
                     /locus_tag="R2H98_001280"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEE9024152.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1669..2016)
                     /locus_tag="R2H98_001281"
     CDS             complement(1669..2016)
                     /locus_tag="R2H98_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024153.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGT
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2096..2944
                     /gene="folD"
                     /locus_tag="R2H98_001282"
     CDS             2096..2944
                     /gene="folD"
                     /locus_tag="R2H98_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEE9024154.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVIDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2954..3802
                     /gene="lepB"
                     /locus_tag="R2H98_001283"
     CDS             2954..3802
                     /gene="lepB"
                     /locus_tag="R2H98_001283"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEE9024155.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGSQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYTNKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3824..4984)
                     /locus_tag="R2H98_001284"
     CDS             complement(3824..4984)
                     /locus_tag="R2H98_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEE9024156.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNTALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKTPKQYNAYRYKGEELKKGELLLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMFQNASYLGIIKDNF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKSEFLLISEENISELKKGDEITLLKI"
     gene            complement(4981..6237)
                     /gene="murA"
                     /locus_tag="R2H98_001285"
     CDS             complement(4981..6237)
                     /gene="murA"
                     /locus_tag="R2H98_001285"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEE9024157.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     AEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            complement(6303..6732)
                     /locus_tag="R2H98_001286"
                     /pseudo
     CDS             complement(6303..6732)
                     /locus_tag="R2H98_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903009.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6857..>7354)
                     /locus_tag="R2H98_001287"
     CDS             complement(6857..>7354)
                     /locus_tag="R2H98_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEE9024158.1"
                     /translation="LGFECKVIKNDTFKKAKELEKFDFTHLIISPGPHSPKESKLSLK
                     AIKYFKKNKKILGICLGHQCIAEVFGGRVSKMQNPMHGKISKLYFKKDPIFKGIKKEI
                     EICLYHSLHISFMPKKCKILAHNSENIIMAIKHKKYPIYGLQFHPEAVLTQKGKKILK
                     NFMKL"
BASE COUNT         2334 a         1149 c         1147 g         2724 t
ORIGIN      
        1 cgatgaaaat atgatccaaa aaaataaatg aataatggca aaaatacaaa atagagcttt
       61 tttatgttcc attatttgtt cttttctttt tgaatttttt ctttgatcaa ctcatctctt
      121 tctttaaatt cttcatagct ttttacttga actttataag ctttgtaaac attaagtata
      181 gcagcactga tcccccaaaa aactccaagc caaaaaagcc aaggataagg agtaaatttt
      241 ttaagtaaat atcctattcc cacacctata aatacagcaa caaccataga gataccaaga
      301 cttaaaccat ccgcagcttc aagagttttg cgaatgattt tttgtctttt gctgttggaa
      361 ttttctaagt gatttttttc ttcttttaaa atattgctca tattctttta aagctttccc
      421 taacagcctc tagtgttgta tctataattt tatcatccat ttttgaacat ataaagcctg
      481 tttcaaattg agaaggtgct aaataaattc cattttcaag catatttttg tgaaattttg
      541 aaaataatgc tagatcggat tttaatgcat cttggtagtt tgatacagga tctttggtga
      601 aaaagtatcc aaacatagaa cctacatgac aaacttgcag tggaagtcct ttttcatctg
      661 ctaatttttt cattccttgg gtaagttttt ttgctaattt tccaagtttg tcataaagct
      721 tggttttctt tttggctttt gtaagacttg ctatacctgc agccattgct aaaggatttc
      781 cacttaaagt tcctgcttga taaactccac ccaaaggact taaaatatcc ataatttcag
      841 ctctagaagc aaatgctgct gcaggtagac cgcctcctat taccttacca aaagtaatta
      901 tatctgcttg gatatgattg attccatagg aaccaaggta agatgctcta tatccactca
      961 ttacttcatc aaaaatcagc agagtttgat tgtttttaca gatcttagca agttcttcta
     1021 aaaaatcttg tttagctgga actaacccca tatttccagc aataggctca atgataacac
     1081 atgcaatatc tttatttttt tcaaaaagct ctttaacgct atttatatca ttatatttag
     1141 ctactaaagt gtgtttagct acatcttcta aaacacccaa agaactagga gagttaaaag
     1201 tagcagcacc acttcctgca ctcactaata atgaatcaga atgcccgtga taacatcctt
     1261 caaattttaa aattttatct tttttagtaa aaccacgggc aagacgaata gcactcatgg
     1321 ttgcttctgt tccactgctt acaaagcgga tcttttctaa atgaggaaaa tcagataaaa
     1381 caagcttggc aagttcagtt tctaataaag ttggagctcc aaaacttgaa cctttatgaa
     1441 gtgctttttg acaagctttt tgtatatctt tatcgcaatg tccaaaaagt aaaggccccc
     1501 agctttgaac atagtctata taagaatttc catctatatc gaaaatataa gcaccttttc
     1561 catgagaaat aaattttggc tcactttgaa catttgcaaa agcacgaact ggagaattta
     1621 caccacctgc gatgaattta cacgcttctt taaaagcttt tttgtttgtc atttttcttc
     1681 cttgctaaat tgcttgatgt aattatataa agttacaatt tcatcatttg ttaaagagta
     1741 atttggcatg attgattttg cgtctttact ctgattaaga gaatttttaa aattctcaaa
     1801 actaagattt tgtatacttg gaactttata agctgtttta ataccatttt tcatataata
     1861 tcctaaaatt tgttcgcttc catctgttcc atgacattct ttacaactaa tgccccttgg
     1921 attttcataa agcattttag agtattcttt aagagtgata aaatcagcac caaaaagact
     1981 gatactaaat aaaaaaaaca ttaaaacaat tttcaaagtt tcaccttgtt aatgaagttt
     2041 taatatgata caatttttac tttaaaaaag tgattaaatt tatagaagga aaataatgac
     2101 tttgcttgat ggtaaagctt taagcgcaaa aatcaaagaa gaattaaaag aaaaaaatca
     2161 atttttgaaa agcaaaggga ttgaaagctg tttagctgtt atcttggttg gagataatcc
     2221 tgcaagtcaa acttatgtaa aatctaaggc taaagcctgt gaagaatgtg gaattaaatc
     2281 tttagtttat catcttaatg aaaatactac acaaaatgaa cttttggcat tgattaatac
     2341 cttaaatcac gatgatagtg ttcatggaat tttggttcag cttcccttac ctgatcatat
     2401 ttgtaaagat ttaatacttg aaagtattat aagtagtaaa gatgttgatg gctttcatcc
     2461 tattaatgta ggatatttaa atttaggctt agaaagtggg tttttgcctt gtactccact
     2521 tggagttatg aagcttttga aggcttatga aattgattta gaaggaaaag acgctgttat
     2581 tataggtgct tcaaatatag taggtcgtcc tatggctact atgcttttaa acgctggagc
     2641 tacagtaagc gtttgtcata ttaaaaccaa agatttgagc ctttatacta ggcaagctga
     2701 tttgattata gtagcagcag gttgtgtgaa tttacttcga tcggatatgg taaaagaagg
     2761 agtgattgtt attgatgttg gaatcaatcg tcttgaaagt ggaaagatag ttggagacgt
     2821 ggattttgaa gaggtatcta aaaaatctag ttatataact cctgttccag gtggagtagg
     2881 tcctatgact atagccatgc ttttagaaaa cacagttaaa tctgctaaaa atagacttaa
     2941 ttagggaaaa tctatggaaa ttttaaagaa attatataaa ttttcacagt cttggactgg
     3001 aactgtagtt attgttcttt tggtgatttt tttctttata caagcttttg ttattccttc
     3061 tggttctatg aaaaacacct tattggtagg ggatttttta tttgttaaaa aatttagcta
     3121 tggtatccca actcctcata ttccttggtt ggaaattcct gttttgccag atttcaataa
     3181 agatgggcat ttgataaaag cacaagggtc acaaagagga gatatagttg tttttagaaa
     3241 tcctagaaat gaaaaagaac actttgtaaa gcgttgtgta ggcacaggag gagataggat
     3301 agtttataca aataaaacac tttatgtaag aatgcatgag ggtgatgaat ttatgaaaga
     3361 acattatccg aatgatcttg ttactcttgg agggcaaatt tatgtaaaag aaccttataa
     3421 acaaaaaggt attcattatg atccaaaaaa agatatagaa agcgatattt tacgctttct
     3481 tagcataggt gattttgcta tgtctccaac ttatattaaa gaacttggaa atcatatagg
     3541 ttttagcggc ggaaatgctt atgtttttga tgtgcctgaa aatgagtatt tcatgatggg
     3601 tgataatcgc gattattctt atgatagtcg tttttggggt tctgttcctt ataggttgat
     3661 agtaggtaaa ccttggtttg tatatttctc ttgggataaa gataaaaatg ttcgctggga
     3721 aaggataggg cgttttgttg ataccttgga aaatgatgaa caatatatcc atgatcatga
     3781 tgatgaggat aaattaagct aatgtttgtg aaaaacacaa acattatatt tttaaaagcg
     3841 tgatttcatc accttttttt aattcgctta tattttcttc acttataagc aaaaattcac
     3901 ttttaataag tggaagtatc ataccagatc caaatttatt ttcattaaat ggtgtaaaaa
     3961 tatctttttc taaatttcct aagatgagat tatttcttcc gcttttaagc tttaaatcca
     4021 tacccatttt gccataaaat gttaaaggat tgtctaggtt tccacttaat aaattaatga
     4081 tttttttagc aaaaataaaa caagaaagat aagctgccat aggatttcct ggtaaaatca
     4141 atacgaaatt ttcacctttt ctataaagct tagtaggtct tgcagggcgt gcttttaaac
     4201 ctttaaaaag tggagtaaag cctaattcat ctaaagcttt ttccataaaa tcagcctcgc
     4261 caacgcttgc acctcctgaa gtgattaaaa gatcaaaatt tgtattttct aaagcctctt
     4321 tagtgctttt aaaattatct ttgataatac ctaaataaga agcattttga aacatggtta
     4381 gcaaaggtaa agcattggca ttataaatac tttcttcatc gcattcttgc caaggttctt
     4441 taagttcatt tccgcttgaa aaaatgccta tgcgaatttt tcttatgact tctattttat
     4501 aaagcccttg agaagcaagt agggcgatat gtttatcatt aagtttagtg cctttttgaa
     4561 gcaaaagttc gccttttttt aattcttcgc ctttgtagcg ataggcattg tattgtttag
     4621 gggttttttt aatgatgagt ttattttctt ctatatactc atcttctaac attaagatag
     4681 tatcagcatt tttgggcatt ttagcccctg tcatgatttt atagcattca ttcttagcaa
     4741 ctgtataaaa atttttatct cctgcaaaaa tagtcccttt aatctccaaa gcctcattga
     4801 tatcagtata attaaaagca tagccatcaa gagcagtatt gtcaaaacta ggtagatttt
     4861 ttctagcgta taaatcttta gctaaaattc tatcctttgc tttttcaagg ctaataagct
     4921 cactttcatc taaacatgaa atttgatttt ctaagtcttt taaggtttca aagatatttt
     4981 tcattcttca agccttgtga ttttcacacc caaatcttta aatttttctt ctaaattttc
     5041 ataaccccta tcaagatggt aaattctatg gactttgctt gtacctttag ctgcaagagc
     5101 tgctaagata agggctgaag aagcgcgcaa atctgtagcc atgacatcag cagcgttaag
     5161 ttcttttccg cctactatgg tagcaatatg accattgagt ttaatatccg cacccattct
     5221 taaaagttca cttacatgca tgaaacgatt ttcaaatagt ctttcatcaa taatactagt
     5281 tccattagct tttaaagcta gtgccataaa ctgcgcttgc atatcggttg gaaagcctgg
     5341 atattcactt gtcatgattt ctacaggttt aatttcttta gcaggaagta gggtgatact
     5401 atcttctgca atcaaagttt caaaacccat ttgatgaagt tttgctaaaa ctgcactaag
     5461 atgagtggcg ttaactttat ctaaagtaat tttagaattt gtaatagccc ctgcacaaag
     5521 ataagttcct gcctcaattc tatcaggtat aacgctaaat tctttaaatt ctaaaagttc
     5581 tccatcacta ccataaattt caagttcatc tgtacctatg cctttgattt caagtcctgc
     5641 gtcttttaaa acttcgcaaa gttgaactac ttcgggttct tttgcaacat ttaagagctt
     5701 ggttttacct ttggctaaag ctgctgccat gatgatgttt tcactacctg taaccgtgat
     5761 tttatcaaaa agaatttcat tgccttttaa atttccacta gctacgacat agccttgttt
     5821 aatttgtata tttgccccca ttttttccaa ggctaaaaga tgtaaatcaa taggtctttg
     5881 tcctatggca catccaccag gcaaagatac ttcacaatgc ccaaaacgag caagcaaagg
     5941 ccctagagta agtatagaag cacgcatttt acgcacaatg tcatatttag ctatggtttg
     6001 attaagagtg tttgtgttta ataaagcact attgttttga aaattgacct tagctcctaa
     6061 attttctagc aaagatataa gagtttttat atcagcaaca ttaggaacat tgttgatttt
     6121 tacttcattt ttagcaagta tgcttgaaac gatcaagggt agggcagcat tttttgctcc
     6181 gcttattgta acatttccgc ttagatgatt tgtgccttcg atttctagat aagtcatatt
     6241 tttccttgaa aaagtttaaa aatgcatcat tatagcattc ttaaactttt gaaaaaatat
     6301 aatcaagttt gttggctttg gagttcttga atttgagctt gaattatatc tgcttgagat
     6361 tttagcacat caatttgttt ttgaaatgtc cgttttcatt tgttcgttag cgtttgtcat
     6421 tttttgagta agttctgcaa ttttagctaa aattccagct aattttgcta ttaaagcctc
     6481 taatgcggga tttacgccac ctttgctatt ttgaatggaa ttttggtctt tgtggttttc
     6541 tattttttct tgacttactt tgatttcata ttctttttca ttttttgaat ttgtttgact
     6601 taaacttctt gcttcatctg aaatttgaat tttaaccaca ttgtcgctat gaacattact
     6661 taccaaatca ttgtctttgt ttatttgtgt ttgataattg ctaaaatttt ttgtcaaagt
     6721 atctattttc atcttaaatc tttttaaatt aatttatatt gttatcggtt ttttatttat
     6781 aaatttatat taatgatagt tattttaagg atattttgct ttagattttt atatttatat
     6841 tttaaacgca aaaaaactaa agtttcataa agtttttaag tattttttta cctttttgag
     6901 ttaaaaccgc ttcagggtga aattgtaatc cataaatggg atatttttta tgtttaattg
     6961 ccataatgat attttctgaa ttatgagcta aaattttgca ttttttaggc ataaaactga
     7021 tatgtaaaga atgatataaa caaatttcaa tttctttttt aataccctta aaaataggat
     7081 cttttttaaa ataaagttta gaaattttac catgcatagg attttgcatt ttagaaaccc
     7141 taccgccaaa aacttcagct atacactgat gccctaaaca tatacctaaa atttttttat
     7201 tttttttaaa atatttgatt gcttttaagc ttaatttaga ttccttagga gaatgaggcc
     7261 caggagagat gataagatga gtaaaatcaa atttttctaa ttctttggct tttttaaagg
     7321 tatcattttt tatcacttta cattcaaaac caag
//
LOCUS       DAQSLY010000078         7291 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.078, whole genome shotgun sequence.
ACCESSION   DAQSLY010000078 DAQSLY010000000
VERSION     DAQSLY010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7291
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.078"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..369
                     /locus_tag="R2H98_001288"
     CDS             <1..369
                     /locus_tag="R2H98_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF814 domain-containing protein"
                     /protein_id="HEE9024159.1"
                     /translation="KKNSKKNQDHKQEDLVANFYFNEFKICVGKNEKGNEFLLKNAKK
                     DDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARLCVSFSKLKKGSYWVDYTLKNFVK
                     VQQKAFVNYTNFKSINITKD"
     gene            371..709
                     /locus_tag="R2H98_001289"
     CDS             371..709
                     /locus_tag="R2H98_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024160.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            718..1443
                     /locus_tag="R2H98_001290"
     CDS             718..1443
                     /locus_tag="R2H98_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEE9024161.1"
                     /translation="MFNTTRIISALVMIGAIIIITLIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSLTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTLL"
     gene            1440..2510
                     /locus_tag="R2H98_001291"
     CDS             1440..2510
                     /locus_tag="R2H98_001291"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEE9024162.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            2512..3906
                     /locus_tag="R2H98_001292"
     CDS             2512..3906
                     /locus_tag="R2H98_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEE9024163.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFANISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDSNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANTNSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            3903..4910
                     /gene="tsaD"
                     /locus_tag="R2H98_001293"
     CDS             3903..4910
                     /gene="tsaD"
                     /locus_tag="R2H98_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEE9024164.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            4911..5426
                     /locus_tag="R2H98_001294"
     CDS             4911..5426
                     /locus_tag="R2H98_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEE9024165.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGIENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            5426..6670
                     /locus_tag="R2H98_001295"
     CDS             5426..6670
                     /locus_tag="R2H98_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEE9024166.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLCFDDEKEIKGLVFII
                     PGLGGDADENYREHLAEFVASEYNAAVASVNYHCIGNRPQTGSSFFMDDIDKLILKTS
                     CEALNIQVNLDKLNSLEELSSTLKEVDHILEEQKNQKLINPNFKLSIHLSLQPTKNEY
                     QNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLIDG
                     VIDNSSYAKFLWRLVGFGKEIDFMRYYCFGTANFFKHIFTYCSDKTFWTSNSSLNNFF
                     SVPRRMIRYILEPKHLEIQSSYPKPYYTSYHSFYDKEIAPPDEKLELYKYLKQFGFDT
                     ELYMIKNPDQVDGKFIKSLEHGMGMSMKTLISKEFPLMLEKIKQNPKKDCKEKCISYP
                     CEDLLYQFSEKDDKMSLKIDKI"
     gene            6680..>7291
                     /locus_tag="R2H98_001296"
     CDS             6680..>7291
                     /locus_tag="R2H98_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024167.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLNFIQNKTCSHFNIDENLNIF
                     DKTHNVFMYENLEEEINFFYQSILEKTPRYPFVCIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSTIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYEMFV
                     NNVYYKKFYEDVWHKADELCEKNIKVVIRNLNSSLCIGFECYSH"
BASE COUNT         2625 a          934 c         1312 g         2420 t
ORIGIN      
        1 aaaaaaaata gcaaaaaaaa tcaagatcat aaacaagaag atcttgtggc aaatttttat
       61 tttaacgagt ttaaaatttg tgtgggtaaa aatgaaaaag gcaatgaatt tttacttaaa
      121 aatgctaaaa aagatgattt gtggcttcat gtaagggata ttcctagcgc acatactttg
      181 attgtatcaa acaagcaaaa aatcagcctc gatgtgatag aatttgctgc aaggctttgt
      241 gtaagctttt ctaagttaaa gaaaggttcg tattgggtcg attatacctt aaaaaatttt
      301 gttaaggttc agcaaaaggc gtttgtaaat tatacaaatt ttaaaagtat taatatcaca
      361 aaggattaaa atgccagtta gccctttagg aaatatcaat tatataaatc agaatatggc
      421 ttatccagct acacaagcaa gcaatgagct tgcaaaagaa ggttttgcag ctacgctaaa
      481 tatggctgaa tttaatgaaa aagaaaaaac tttgaacaag cttgaaaaag tcaatgagac
      541 tcatgaaatc aaagaagaga tcaaagaaaa agccgaacaa gaagaaaaaa agaaaaaaca
      601 caatcaagaa gctaaaacca gcgatgatga gaaaaatgaa gaagatgagt ctaaagatcc
      661 aaattttaaa gacgcacaaa gcattcatcg cttagatatt agtatataag gaaaaatatg
      721 tttaatacaa ctagaattat ttcagctctt gtgatgatag gggctattat tattatcacg
      781 ttgattgatc aattttttat caattttatc gtttttgcgg ttttattgta tctatctttt
      841 agtgaagcaa aaaaactttt tgctttagaa aatatctcta ttatcccttt ggctatagct
      901 tttattttgg gaagtttatc gcataaagct ttgctttttg ggattttagc tttgttatta
      961 gtcgttggat atttggttta taaaaaggct tccttaaaac cagctcttat ttatatttat
     1021 cctagtttgc ctattttagc actttggcaa gtgtatttag atcagggtat gtttgcactt
     1081 ttttggctta tcattatcgt tgcagcttgt gatagtgggg cgtattttat cggaaaactt
     1141 atgggtaaaa ctcctttttc tctaacaagt ccaaacaaaa ccttagaagg tgttataggt
     1201 ggcttgattt gtgcgagtgt tattggaact attttgggag tttttgttta tagtttttgg
     1261 ctttctttgc tttgttcgtt ttttgtagcg atttttgcag tgattggaga tttgcttgag
     1321 agttatttta aaagagaagc aggtgtaaaa gatagtggag atcttatccc tggtcatggg
     1381 ggcgtgctcg ataggatcga tgcggtgatc attgctgctt ttgtgatggt tactctttta
     1441 tgatactttt tggaagcacg ggcagcatag gagtaaacgc tcttaaactt gctgctttaa
     1501 aaaacattcg tatttctgct ttagcttgtg gggataacat cgctctttta aatgagcaaa
     1561 tcgcaaggtt taaacccaaa tttgttgcca taaaagattc aaaaaataag catttagtta
     1621 aacacgatag agtttttata gggcaagaag gtttagagca aattttaaca gaatgtcaag
     1681 ataagctttt actcaatgcc attgtaggtt ttgcaggact taaaagcact ttaaaggcta
     1741 aagagcttgg caaaaacata gctttagcta acaaagaaag tcttgtagta gctgggagtt
     1801 ttttgaaagg ggctaaattt ttacccgttg atagtgagca tgcagcttta aaatttttac
     1861 tcgaaggtaa aaaaaatata gcaaaacttt atatcacagc aagcggcgga gctttttata
     1921 agtataaaat caaagattta aatcaagtca gtgtcaaaga tgctttaaaa catcctaatt
     1981 ggaacatggg agcaaagatc actatagata gtgcgactat ggcaaataag ctttttgaga
     2041 ttatagaggc ttatcattta tatgatttta aagaaattga tgctttaata gaaccaagat
     2101 ctttagtgca tgcaatgtgt gaatttaaaa atggagctag cacggcgtat ttttcaaaag
     2161 cagatatgaa actagctatt tcagatgcta tatttgaaaa acaagatacg cctattttag
     2221 aggctgttga ttttagtaaa atgcctgctt taaaatttca tccaatcagc acaaaaaaat
     2281 atcctatttt taagcttaaa aatacatttt taaaagagcc aaatttaggt gttatcatca
     2341 atgctgctaa tgaagttggt gtttataatt ttttagaaaa taaaagtgga tttttagaca
     2401 ttgctaaatg catttttaaa gctcttgatc attttggagt acctaaaatt tcaagcatag
     2461 aagaagtttt tgagtatgat tttaaaacaa gagagtattt aaggagttaa aatgaaattt
     2521 tttttaacaa ttttattttt tataacaagc atttttgctt tagagctaga ctttagcgta
     2581 ggagaaaatg gaaaaagtct agatgataat aatacagttt taatttttgg tggaattcaa
     2641 ggcgatgagc ctggtggatt tcatgcggca agtttgcttt tgagtgatta taatatcact
     2701 aagggtaaga ttatagtggc tccaaattta gcttttgata gcattatcaa gcgttctcgt
     2761 gggaataatg gggatttaaa ccgtaaattt gcaaatatta gcccaaaaga tcctgattat
     2821 aaaaccgttc aacgcattaa agagcttatt ttacttcctg aagttagtat ggtgatcaat
     2881 cttcacgatg gttggggttt ttataaaccc acttatatcg atgcgatgca aaatcctaag
     2941 cgttggggaa attcaagcgt gattgataca agcgaaatca atgcaagcaa ataccctgat
     3001 cttgaaaata tcgccactca aaccgtaaat agtgtcaatt cttcgcttgc tgatccaaag
     3061 catgcttatc atcttaaaaa caccaaaacc caagagcttg gcgatacgga aatgcttaaa
     3121 gctttaactt attttgtgat ttcaaatcac aaagccgctt ttgcaaatga agcaagtaaa
     3181 aatctgcctg taaatttaag agcttattat catcttttgg caattgaaaa ttatttaaaa
     3241 actgcaggaa ttgaatttag cagagatttc gaactcactc cgcaaggagt tgataaagcc
     3301 ataaataaag agcttgaagt aaaacttttt gatgatagaa ttttactttc tttaaaaaat
     3361 ccaagaaagg ttatcaacta tgtgcctttt ccggtaaata aagagttaaa ttataacaca
     3421 agcaatgaac ttacggctgt tatcgcagaa ggaaattctt tttatatcca atatggcaat
     3481 cgttttcaaa caagattata tcctgagtat ttagaattta gcgatgcttt taatgaagta
     3541 acttttcaag ttgatagcaa tgaaaccaca gttccttttg gaaccaaggt aaaagtaaaa
     3601 gagaattttc ttattccaaa gatagctaat gtgcgcgtaa atatcatagg ctttgatcat
     3661 ggaaaagatg aaagtggtat tttagttcat aaaaaaaata tgcaaacaca atactcttta
     3721 gacatggcag gtaaaattta tagagtggaa ttttatgagt taagaggggc gaatttgcaa
     3781 caacttttag aggcaaatac caatagcaag ttgatcaaaa atgctaaaaa tttggattta
     3841 aacactctta aaatggcaag atcaaaagat aaattcttag gttctatttt agtggaattt
     3901 gaatgaaaaa tcttatccta gctatagaaa gttcttgtga tgatagttct atagctatca
     3961 ttgataaaaa taccttagaa tgtaaatttc ataaaaaaat ttcccaagaa ttagatcata
     4021 gtatctatgg gggagtggta cctgaacttg ctgcaagact tcatagcgag gctttaccaa
     4081 agatacttaa gcaatgcaaa gagcatttta aaaatctttg tgccatagct gtgacaaatg
     4141 aacccgggct tagcgtttct ttgctcagtg gaatttccat ggcaaaaacc ttagcaagtg
     4201 ctctaaattt acccttaatc cctataaatc atcttaaagg tcatatttat agtctttttt
     4261 tggaagaaaa aatttcttta gatatgggaa ttttacttgt tagtggtggg catactatgg
     4321 tgctttatct taaagatgat gcaaacttag agcttttagc aagtacaaat gatgatagct
     4381 ttggagaaag ttttgataaa gtggctaaaa tgatgaattt aggttatcct ggtggggtca
     4441 tcatagaaaa tttagcaaaa aatgccaaac ttaaaaatat ctcttttaat atacctttaa
     4501 agcattctaa agaactcgct tatagttttt caggacttaa aaatgcagtg cgtttagaaa
     4561 ttttaaagca tgaaaattta agcgatgata taaaagcaga aatagcttat gcttttgaaa
     4621 atacagcttg tgatcatatc atggataaat tagaaaaaat ttttaatctt tataaattta
     4681 aaaattttgg cgttgtagga ggagctagtg caaatcttaa cttgcgttcg cgtttgcaaa
     4741 atttatgtca aaaatataat gcaaatttaa aactagctcc cttaaaattc tgctctgata
     4801 atgctttgat gatagcaaga gccgcagttg atgcttatga aaaaaaggaa tttgtaagcg
     4861 tagaagaaga tattttaagc cctaaaaata aaaatttttc aaggatatag atgagaaaag
     4921 cttttactat attagaactt gtttttgtga ttgttatctt aggaatttta gccgctattg
     4981 ctttaccaaa aatgagttca agtaagcatg aagccgaggt tagtaagtct ttaaataacc
     5041 ttaaaacttt gatcaacgat ataagcattt atactttgaa aaatgatcat ttaagctcta
     5101 taaaaacgat gagtaatgta agcgggattg aaaatgttga tcttagtaat tttaacggta
     5161 taaaagaagt aaattttcgc gtaggcgatg ataaagaatg cttaaaactt gtttttataa
     5221 ataaagctga ttttatactc atgggaattt caagcaatga agcaagtaaa aatgctatca
     5281 tcaacgcagc taatcaaagc catgaagatt tagaaaatat agactttaca agctcttcta
     5341 gtaataaagc ttgtgtgatt ttaagtaaga atgaaaattt taaaaaccta gcgagtaaaa
     5401 cttatctttt aataggggga atgtaatgat agtgagtaaa acttatgaga tcgactcttg
     5461 tgatgatgta gaacttggta taaaaagaga atcaaagctt gaatttaagc tttgttttga
     5521 tgatgaaaaa gaaataaaag gtttagtgtt tatcatccct gggcttggtg gagatgcgga
     5581 tgaaaattac cgtgaacact tggctgaatt tgtggctagt gagtataatg cagctgtagc
     5641 tagtgtgaat tatcattgta taggaaatcg cccgcaaact ggatcaagct tttttatgga
     5701 tgatatagac aaacttattt taaaaacaag ttgtgaagct ttaaatatac aagttaattt
     5761 agataagtta aattctttag aagaattaag ctcaacactc aaagaagttg atcacatctt
     5821 agaagaacaa aaaaaccaaa aattaattaa tccaaatttt aaattaagca ttcatctaag
     5881 tttgcaacca acaaaaaacg aatatcaaaa ttttgggatc atgcaagctc aagatctttt
     5941 aaatgtcgca ctttatctta aaaaacatgc tccttttgat actatggggg ggggtatacc
     6001 agttattatg ataggtagtt ctcatggtgg gtatttggca catttagcag ctaagattgc
     6061 gccttggctt atagatggag ttatagataa ctcaagttat gctaaatttc tttggcgtct
     6121 tgtaggattt ggaaaagaaa ttgattttat gagatattat tgttttggaa cagctaattt
     6181 ttttaaacat atttttactt attgctctga taaaactttt tggacaagta attctagttt
     6241 aaataatttt ttttcagtgc caagaagaat gataagatat atcttagaac caaagcatct
     6301 tgaaattcag agtagctatc caaaaccata ttatacaagc tatcattctt tttatgataa
     6361 agaaatagct ccacctgatg aaaaattaga actttataaa tatttaaaac aatttggatt
     6421 tgacacagag ctttatatga taaaaaatcc agatcaagtt gatggcaaat ttatcaaaag
     6481 tttagaacac ggtatgggaa tgtctatgaa aactttgatt tctaaagaat ttcctttaat
     6541 gctagaaaaa ataaaacaaa atccaaaaaa agattgtaaa gaaaaatgta tctcttatcc
     6601 ttgcgaggat ttgttgtatc aatttagcga aaaagatgac aaaatgtcac taaagataga
     6661 taaaatttaa ggaaacctaa tgaccatact agaaaaaaac atacaagctt tattaagtgg
     6721 ggtaaatgaa cccttaggaa ataaactttt aaatttcata caaaataaaa cttgttctca
     6781 ttttaatata gatgaaaatt taaatatctt tgataaaact cataatgttt tcatgtatga
     6841 aaacttagaa gaagaaataa attttttcta tcaaagtatt ttagaaaaaa ctcctagata
     6901 tccttttgta tgtatttatg gtataggcaa tgctttacta attaaaaatt tagctaaaca
     6961 ctataaacat ctttttgtat ttgaaagtga aatagaactt tttattctag ctttaagcac
     7021 gatagatttg agtgaagagc tttgtagtgg aaaaatttat cttgtggata tcgaagaaga
     7081 aagagtagat attcaactgc ttatactttt tgatatgaaa gatatgtttg agtacttaag
     7141 tttgtatgaa atgtttgtga ataatgttta ttataaaaag ttttatgagg atgtctggca
     7201 taaagcagat gagctttgcg agaaaaatat aaaagttgtg ataagaaatt taaattctag
     7261 tttatgtatc ggttttgagt gttattctca t
//
LOCUS       DAQSLY010000079         7122 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.079, whole genome shotgun sequence.
ACCESSION   DAQSLY010000079 DAQSLY010000000
VERSION     DAQSLY010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7122
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.079"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            149..862
                     /locus_tag="R2H98_001297"
     CDS             149..862
                     /locus_tag="R2H98_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEE9024168.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            837..1028
                     /locus_tag="R2H98_001298"
     CDS             837..1028
                     /locus_tag="R2H98_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEE9024169.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            1028..1570
                     /locus_tag="R2H98_001299"
     CDS             1028..1570
                     /locus_tag="R2H98_001299"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEE9024170.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            1619..3832
                     /locus_tag="R2H98_001300"
     CDS             1619..3832
                     /locus_tag="R2H98_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEE9024171.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTAEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPINTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            3829..4470
                     /locus_tag="R2H98_001301"
     CDS             3829..4470
                     /locus_tag="R2H98_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEE9024172.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4467..5399
                     /locus_tag="R2H98_001302"
     CDS             4467..5399
                     /locus_tag="R2H98_001302"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEE9024173.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5566..6348
                     /gene="fdhD"
                     /locus_tag="R2H98_001303"
     CDS             5566..6348
                     /gene="fdhD"
                     /locus_tag="R2H98_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEE9024174.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            6341..7078
                     /locus_tag="R2H98_001304"
     CDS             6341..7078
                     /locus_tag="R2H98_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEE9024175.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         2487 a          876 c         1481 g         2278 t
ORIGIN      
        1 tggaatttta ttgaaattca gtgattttta aatcaaatag tattaagata aatcgattta
       61 aaaatcggct ttaaaatgaa tattaggtat attttgcata atattcattc aagcaaaatt
      121 taaagctatt tttgaaaatt ttgaatgcat gggagcttta atggatttgg aaaaattaag
      181 attagctaga agtctttatt atcaatgtct aggagagctt tttgtttttt cattttctga
      241 agaaagattg tcaaaattac aagagtattt aaagacaatg caagaatgtt tatttgatga
      301 aaatttaaaa tcaaattttg atatcttgct taagcattta gatgatgaaa attctataca
      361 agcatttttt aaagaatatg atttgctttt tttaagtctt aaaaatagca ttccaacgac
      421 tttttcttac atagaagaag gttttgaaaa ttcaaatcct ttactttgcg tgcgtcaaat
      481 tttagtcaaa agtaaaataa gacgcaatga aaaatttttt aaagaaagtg aagatagtgt
      541 tggattttgt ttattgttga tgagtgaatt tttaaggcaa aatgaagatg atttagccaa
      601 agagcttttt gaaaaagtga tcaataaaag cattgatgag tttttaggcg atgttttcat
      661 gaataaaaat gcgaatttat ataaggaaat tgcaagtatt gcatcggctt ttatggaatt
      721 tgaaagactt tgctttgaag tggaaaaacc tgcaaaaata aattctaaaa aagtgcaaaa
      781 cgatctatcg cgttcagaat ttttaagaag agaagcaaat aaacaaagga ggactcgtga
      841 aaaatcgcag ggaatttctt aaaaaatccg cttttgcctt aggggctgct ggagtgcttg
      901 gtagcacgac tttagctcta gctaaagatg aagaaagaaa agatttggtt aaaggtaaaa
      961 gtaagaaaaa agaagtgctt tttcaaagaa gtgctaattg ggaaaaatat tatataaagg
     1021 ctgagtaatg tcaagtgtag gtgaaaatat caagcttacg cgtcgttctt ttcttaaaat
     1081 ggcagcactt tcaagcctag caacaccgtt gcttgctaga agtgaaactt taagagaagc
     1141 gagtgctgat gagcttaaag aagcgtatga aggtagtaaa aaagtaaaaa cagtttgtac
     1201 agcctgttct gtaggctgtg ggattattgc agaagtgcaa aatggtgttt gggtgcgtca
     1261 agaaattgct caagatcatc ctgtgagttc aggtggacat tgctgcaagg gatctgatat
     1321 gatcgatatg gtgcgttcac atgtgcgttt aaaatatcct atgaaaaaag aaaatggaga
     1381 atggaaacgc ataagttatg agcaagcttt aagtgagatc ggagaaaaac tagctgctta
     1441 tcgtaaagaa aatcctgaaa gtgttatgtt tttaggttct gcaaaactta ataatgaaca
     1501 agcttattat ataagaaaat ttgcagcatt ttttggaacg aacaatgtag atcatcaagc
     1561 tagaatttga cacagcgcaa cagtcgccgg tgtggcgaat acatttggtt atggcgctat
     1621 gacaaaccat cttggagaca ttcaaagaag taaatgtatc attatcattg gagcaaatcc
     1681 agcggtaaat caccctgtgg gttttagaca tttcttaaaa gcaaaagaaa aaggtgcaaa
     1741 gcttatcgtt gtagatccta gatttacaaa aagtgcagca aaagcggata tttatgcaag
     1801 aattcgtcca ggaactgaca ttgctttcat gtatggaatg ttaaaaatca tttttgatga
     1861 aggcttggaa gatacaaaat atcttgatga aagagttttt ggaattgata aaattcgtga
     1921 agaagcagca aaatggacag ctgaagaagt ggaaaatgtt acagggatct ctaaagaact
     1981 tttggtgcaa atcactcacg aagtagctaa aaacaaacca actacgctta tttgggctat
     2041 gggtttaact caacatactg taggaacttc aaatacacgt ttagcaccta ttgtgcaaat
     2101 ggtacttgga aatataggta aatttggtgg tggagttaat atcttacgcg gacacgataa
     2161 tgttcaaggt gcttcagata tggcttgttt gagcgaaaat ttaccaggtt attatccttt
     2221 aaatgaagcg acttggagat actatgccaa aatttggggt gtggattatg agtggctttt
     2281 aggaaatttt gtaagcaaag attggatgca taaaactgga ctttcacttg ctagatggtg
     2341 ggcagcggct ttaaatggaa aagatggaaa tgatgctatc gataatgcag gaacgccttt
     2401 aaaagcttta gtagttatgg gaaatggtat tacttcgact gcacaacaag taaaagttaa
     2461 agaaggtttg gaagctttag agcttttagt tttagccgat ccttttgtaa atgaagcagg
     2521 gattatcgca gaaagaaaag atggaattta tcttttacct gcagcaacac agtttgaaac
     2581 aagtggaagt gtaacagcta caaatcgtag tgggcaatgg agatttaaag ttgtagatcc
     2641 actttatgaa agtatggaag atcaagaaat tttatttgag cttgctaaaa aattaggctt
     2701 ttatgaagac tttaccaaga ctttacgcga tgaaaaaggt gagatcgttt ggcctgaaaa
     2761 tgcaacaaga gaaattgcaa aagcagttag aagtataggg cttaatggtt ggagtcctga
     2821 aaggcttaaa aaacatactt tatactggga taaatttgat gaggtaactt tagaaggaaa
     2881 agacgaagtt gcgggcgagt attatgggct tccttggcct tgctggagtg ataagcaccc
     2941 aggttctcct gtactttata ataccgacat tgaagtagca aaaggtggta tgggctttag
     3001 aaataatttt ggacttgagt atgaaggaga gagtttgctt gctaaaaatg cacctttaaa
     3061 ttcgcctatt aatacaggtt atccacaaat tactaaagat aatatagaaa aagttttagg
     3121 tattacttta agtgctcaag aaaaagaaaa aatgggatca acttggtctt atgatgatag
     3181 caatatcata gcaactaaat gtatagaaaa aggcatagtt ccttatggaa atgctaaagc
     3241 tagagctgta gtttggactt ttaaagataa aattccactc caccgtgagc ctttacattc
     3301 tccaagaaac gatttggtac aaaaatatcc aagttttgaa gatcaaaaag cactttatcg
     3361 cgtggatact aaatttgttt ctgtgcaaca agctaaggat tattctaaag aattcccgct
     3421 taatcttgtt accgcaagac ttgtgaattt aaatggtgca ggtatggaaa atagagcatc
     3481 tatgtatcta acgcgtttaa cacctgaaat gttttgtgag atcaatcctg aattagcaaa
     3541 agagcaagac attaaagcag gagatatgat ttgggtgcat tctccagaag gcactaaaat
     3601 tcatgtaaga gtgaaggtta atccaggtgt agcaaaagat atgattttct tgcctttcca
     3661 ttttacagga gttatgcaag gcgtggattt aacgcacaat ttcccagaag gaactaagcc
     3721 ttatgcaagc ggagaaagtg ctaatacggt aacaaattat ggttatgata ttatgtgtca
     3781 gattccagag actaaaggcg ggctttgtag aatcagtaag gatggaaaat gagtaaggta
     3841 aattttgcaa atttagaaaa agaacgcttg aaattctttt gtgataatga gcgttgtatt
     3901 gattgtaatg gttgtgcggt agcttgtgat gaagcacatg agcttcctat tcatattcgc
     3961 cgccgccgtg tgattacttt aaatgaagga attcaaggaa aagaagtttc aacttctatt
     4021 tcttgtatgc attgtgatga tgctccttgt tctatcgttt gtcctgtgga ttgtttttac
     4081 atccgtgctg atggtattgt tttgcatgat aaagaaattt gcataggttg tggatattgt
     4141 ctttatgctt gtccttttgg tgcaccacaa tttccaaaag atagtgtttt tggaaataaa
     4201 ggcattatgg ataaatgtac tatgtgtgca ggtggccctg aagcaacgaa ttcagaaaaa
     4261 gaaagagaac tttatggtca aaatcgtatc gcagaaggaa aagtccctgt atgtgctgcg
     4321 atgtgttcaa caaaagcact tttagtaggt gaaagttcta aaatagaaga gatttatcat
     4381 aatagactta tgaatagaaa ttatggcatt ccaaatcctt cggaaagttt ggaatggaag
     4441 attgcttaca caggaaagga acgcttatga gaaaagtatt tgtaacgctt ttattaagcg
     4501 tagtgagttt atttgcttat ggtagcgaga gaatgggaca agatactcaa atttgggatt
     4561 ttcatcgtat tacaaatatc ccaaattatg atacttttgg caaactttgg acaactttgc
     4621 aaggtgaata tatagctact atagctttaa tcgctgttat tgcggtatta tctgcatttg
     4681 ctttgcatta tatggttata ggacctaagc aattttcaca cgatggaaag aaaatttatg
     4741 cttttacatt atttgaaaga ctttttcatt ttatcgcagc catttcttgg gtgattttag
     4801 tgccaactgg ttttgtgatg atgtttggag aagtttttgg gggtggagtt tttgtaaggg
     4861 tttgtaaaaa tttacacgct tttgcaacga ttttgtttat catctctata atccctatgt
     4921 ttttatggtg gattaaaaga atgcttcctg caagttatga tatcagatgg atgatgatag
     4981 taggtggtta tttaagcaaa gtaaaacgtc ctgtacctgc aggtaagttt aattttggtc
     5041 aaaaatcttg gtattatata gctgtatttg gtggattttt gatgataatt acaggtggat
     5101 ttatgtattt tcttgatttt aattccacgg caattcaagg tctttttggt ttaactcaaa
     5161 ttgaactttt aagaatttca gctatagtgc ataatttctt gggtatagtg tgtgcagtgt
     5221 tttttggtgt gcatatttat atggcagtat ttgcaatcaa aggcagtatc cattctatga
     5281 ttagtggtta taaagaagaa gaagaggttt atattttaca ttcttattgg tataaagaat
     5341 taagcaataa aaagcaaatt gaacctagtt tttcttatga tcctaatgtg aaaatttaat
     5401 ctttaaccgc tatgttatta catagcggta gttttaagct tttttgaaat aaatagaacg
     5461 aattttcttt tataagttga atctaaaatc tatttttcca tatataaatt tgttatttat
     5521 gtttttttga tataatattg tttaaagata tttaaaggat aaggtatgga tccgttattt
     5581 acaactcaaa ttttaaaata taaaggtgat gaatctttta catgcaatga tactttagtg
     5641 cgtgaaatta agcttgaaat ttttattaat gatgaaaaag taggtgcttt aatggcaact
     5701 cctgtagatg aacaggcatt agcaatagga tatttaatga gtgaaaatat cattgcgaaa
     5761 gtaagcgata ttgagagcat agaaacaaaa gatgatggta tgagtgtgca tattaaagca
     5821 aagattgata aagaaaattt agcaaagctt aatgctgaag gtgtagttat aagtggttgc
     5881 ggtagagcac atactgccaa tatcgatcca gaagctattg aagcgagtaa aattagttct
     5941 gatgcaaaat ttagcaaaga tgaaatttta aaacaaatga gtacttttta tactcaatgc
     6001 gagctttacg agaaaacagg ctgtgtgcat acggctaagc tttttgtaga tgagaaaact
     6061 ttttttatag gtgaagatat agctcaacat aataccatag ataaagcttt aggaaaagca
     6121 cgtttagctg gggttgattt aagtcaatgt tttttaatgg ttagtggaag gctaagttct
     6181 gaaatggtag ctaaagcagt tatgcataaa attccagtgc ttgtttcacg cacggctcct
     6241 acttgtttag gggttatgat agcaagaaaa tttgatttaa cgctttgtgg ttttgctaga
     6301 gaaaataaga tcaatattta tagtggagaa tttagaattc atggataaaa atcaagaaaa
     6361 agaaatcatc tcatatatga gagaattgtt aaatagcaat gaaaaattag attgtggtac
     6421 ggcttttaaa attgcaaaga aatttaatat aaatatagaa aaaatcggac aattagccga
     6481 tgaaaatcac atgagaattg ataattgcga gttggggcaa tttggacatt tagattttga
     6541 aaaagcaaag attgaagtgc ttaaaaaaat agaacctagt ttagatgaaa agcgtagaat
     6601 tttttgtaaa gatgcaagag atattgctaa agaaggttgt ggacttaaaa gtatgcgttc
     6661 agctttaaaa acttataagg ttgatgtaaa gtattgtcaa cttggttgtt ttaaagaaaa
     6721 aaaaggtaag caatttatag taagaacaaa aacttggatt gaaaatgcgg atggagattt
     6781 gctttttggt cgaggaaaaa cagaactttt agaacttatc ggacaaacag gtagtttatt
     6841 acatgcttct aaacttatgg ggattaatta taaaaaagct tggatgcatt tacaaacctt
     6901 acaaaaaaat tctcaagaaa ttttagttag cacaagacaa ggacgctcta aagaatcagg
     6961 aacaaaactt actcctagag ctatggaatt gatggaaaat tactctattt tgcaaaaaga
     7021 catagaagaa tacgctaata aacgctttaa agaattgttt ttaaaaggaa aaaaataaat
     7081 cttctatcaa aaaatactaa tacataattt ttttataatt aa
//
LOCUS       DAQSLY010000080         7113 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.080, whole genome shotgun sequence.
ACCESSION   DAQSLY010000080 DAQSLY010000000
VERSION     DAQSLY010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7113
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.080"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(50..502)
                     /locus_tag="R2H98_001305"
     CDS             complement(50..502)
                     /locus_tag="R2H98_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEE9024176.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            557..3103
                     /locus_tag="R2H98_001306"
     CDS             557..3103
                     /locus_tag="R2H98_001306"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEE9024177.1"
                     /translation="MSFIQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYEDK
                     ATLARRADKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTK
                     EGYYSIFGSAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            3153..4391
                     /locus_tag="R2H98_001307"
     CDS             3153..4391
                     /locus_tag="R2H98_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEE9024178.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            4388..5137
                     /locus_tag="R2H98_001308"
     CDS             4388..5137
                     /locus_tag="R2H98_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEE9024179.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKAIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            5134..6867
                     /locus_tag="R2H98_001309"
     CDS             5134..6867
                     /locus_tag="R2H98_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEE9024180.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSVNIFKAQHLAFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLILGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASVNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            6864..>7113
                     /locus_tag="R2H98_001310"
     CDS             6864..>7113
                     /locus_tag="R2H98_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEE9024181.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIEYLDFADEKICA"
BASE COUNT         2456 a         1094 c         1256 g         2307 t
ORIGIN      
        1 tgatattttt gaacaagaat ttgaaaacaa agaaaatcaa accccaagct tattttaaat
       61 tcactccttc attttcaagc aaaaatcttt ttatttcaag ccctccatta tatcctccta
      121 tgccattgtt tgcaataact ctatgacaag gtataaaaat aggaatttga tttttagaat
      181 ttgcatttcc aacagctcta aaagcttttg gatgattaat tttttctgct atatctttat
      241 aagtagctat tttgccataa ggaatttcca ttaaagcctt ataaaccttt gattcaaaat
      301 ccgtaccttg tatcaaaaca ggaatgctaa attttctaag cttatgagta aaatataaat
      361 caagttcata ttttgctaag tcaagcaaac tacaattttt ttctgatctt ttattatcac
      421 aaaaatcgac tctagttaaa aattttccat cactatgtaa agataggtaa cataaaggca
      481 ttttataata aactttaaac attttttatc cttcaaagag ctacaattat aataaaaaat
      541 atttaaggag tagaaaatgt cttttataca agaatacaat aaacttgttg aagaaagagc
      601 cgctttgggt ataccacccc ttcctttaaa tgcaaatcaa actagagaac tttgtaaatt
      661 acttgaaaat gaaaataatg aagagcttgc aaatctttta gaaaatagag taaatcctgg
      721 tgttgatgat gcagctttag taaaatgtga atttttagat tccatactta aaggcaaaat
      781 cagtgctcca aatatagaca aaaaaagagc cttaagaatg cttggaacta tgctaggcgg
      841 atataatgtt aaagttttaa tcgatgcctt aaaagatgaa aacatagcca aagatgctgc
      901 agaagtgttg aaaaatatta tttttgtaca tgataatttc cataccatag ctgaacttag
      961 caaaaacaat ccacacgcta aggaagtttt acaaagctgg gcaaatgcgg actggtttaa
     1021 taaaaaagaa aaactaccac aagtgattaa atgtatagtt tttaaagtag caggggaaac
     1081 aaataccgat gatctaagcc ctgcaggaga tgcttttaca agaagcgata ttcctttaca
     1141 tgcaaatgcc atgctaaagg taagacaaac aggatcctta gaaaaaatca aagagcttaa
     1201 aaaaagcggt cgcgaagtgg tttatgtagg tgatgttgta ggaacaggtt caagtagaaa
     1261 atcggcaata aattccatac aatggcactt aggaaaagaa atagaaggtg tgccaaacaa
     1321 gcacagcggt ggtatagtaa tgggttcaac catagcaccg attttcttta acactgctca
     1381 agatagcggg gctttaccta tcatctgtga tgtaacaaac ttagaaatgg gcgatgagtt
     1441 tgaaattcat ccttatgatg gaaaaatcat aaaaaatggc tctgcaatcg cagaatttac
     1501 actcagtcca aacactctct tagatgaagt tagagcagga ggaagaatcc cacttatcat
     1561 aggtcgtggg ctttgtacta aggctagaga atttttagga atggaaagcg aaaatatctt
     1621 taccaaacct gaacaaccta aatcttcaag cggtggttat accttggctc aaaaaatgct
     1681 aggtcgtgcc tgtggagttg aaggtgtgcg tccaggtatg tatatagaac ctataacttt
     1741 aaccgtaggc tctcaagata ccacaggtcc tatgactaga gatgaaatta aagaacttgc
     1801 aagcctaggt tttaatgcag actttgttat gcaaagcttt tgccatacag ctgcgtatcc
     1861 aaaagtaagc gattcaaatt tacataaaac cttgcccaat ttcatgacaa gtcgtggtgg
     1921 ggtaagttta aaaccaggtg atggagttat ccactcttgg cttaatcgtt ttgtattgcc
     1981 agataccgta ggaacgggtg gggattctca cacacgcttt cctataggaa tttctttccc
     2041 tgcaggaagc ggacttgtag cttttgctgc agttactggt tctatgcctt taaatgtccc
     2101 tgaaagtgtt ttagtacgtt ttagtggaga attgcaagcc ggagttacct taagagattt
     2161 ggttaatgct ataccttatt atgcaatcaa acaaggacaa cttaccgttg aaaagaaaaa
     2221 taaaaagaac atttttgcag gaaaaatttt agaaatagaa ggcttgccaa acttaaaagt
     2281 agaacaagct tttgaactca gtgatgcaag tgctgaaaga tctgcagctg cttgtagtgt
     2341 agatttaagc atagaaagtg taagcgaata tatcaaatca aatatttcac ttatagaagc
     2401 aatgatagaa gcaggatatg aagataaagc cactcttgct agaagagcgg ataaaatgag
     2461 agaatggctt aaaaacccta ctcttttaag agcagacaaa gatgcaaaat atgcgtacat
     2521 tatcgatatt aatcttaaca atatcaagga gccaattcta gcttgtccaa atgaccctga
     2581 tgatgtggca accttaagcg aaattttagc cgatgacaag cgtccaaaaa atatagatga
     2641 agtttttgta ggttcttgta tgacaaacat aggacattat agagctttgg gagaaatttt
     2701 aaaagataaa ggcatactta aaaccagact ttgggtagtg cctccaacaa aaatggataa
     2761 agcacaactc accaaagaag ggtattatag tatctttggc tctgctggcg caaggataga
     2821 agttccaggt tgttcgctat gtatgggaaa tcaagcaaga gtaaatgatg gagctgtagt
     2881 tttctcaact tctacaagaa attttgacaa ccgtatggga atgggtgcta aagtatatct
     2941 aggaagtgct gaacttgcag cagtttgtgc gattttgggt aaaattccaa gcaaggaaga
     3001 atacttacaa attgtcagcg aaaaactaag taatgagcat aaggcaaata tctatagata
     3061 tttaaatttt aatgagattg aaaatttcaa acttgaaaat taattcaaat ttaatactaa
     3121 ataacaaaat taaaattttc aaaggaaaaa tattgaagtt attattcact tccttttgtt
     3181 gttttgcaag tttaatggct agcgatgcca ttaactgcga caacattaaa aataataaaa
     3241 cattgctaaa tgaaagttca aatttagatt atttaaatat agcttcaagc tgtaaagaat
     3301 ctttaaaaaa tcaagatttt acaaaaaaac tctatgcaat ttccaatgaa attcgcggaa
     3361 gcaatagctc ttgtaatggt gtggcttatt tgccaaaatt acaacaattt gattttttat
     3421 tattaaaaat agctatcgat cccatcgctt atcaaaaaac tttagataca cccgaaaatt
     3481 tagaaaaaaa atatgatatt ttaaaatctt attttagata ttgggcatat caaagcatag
     3541 gaaattttag actttacaaa gctttttggc aagaatacaa taatgctata gaacctttag
     3601 aaaagtattt tgaaagtaat tttaattttg acaaaggtag taatatttac tatactagca
     3661 atgccttaaa cgaattttta aattgggctg ttggtgaaac aaaaatttac aaagacatta
     3721 gtcctttagc aaaaatcatg tcaaataaaa attattcagt atcttatata caagatttta
     3781 ttttttcaaa taatccaagc caagatgacc ttactatagc cttgcaagca gcgcttctaa
     3841 atcaaagaga aaaagaaatt ttagaacttt tgattcgttt tggcgctagg attgacgaag
     3901 gttatgaaag tgctattttt tatgcattgg aaagttatga aaatacaaac tttttaatcc
     3961 aaaatggagc aaatgttaat caagccaatg cctttggtaa aaccccactt ttttatgcca
     4021 tagagtttaa tcgtcttgat atcataaaac tacttcttga taatggagca aatgttaatc
     4081 aaaaatatat taataacaat gaaaaattag cattaagcgc gaacataggt tcaaatacgc
     4141 cttattttat tacattttgt gctctagagc acacttcaaa aaatgtttta atgcatgctg
     4201 cagcctatgg aaatgttgaa attttaaaac ttcttatttc aaaaggagca aattttaatg
     4261 ctgttgatga tcttggtttt aatgcactcg actttgcgct atcagcaggt aaaaaagaaa
     4321 atgctgatta tctaaaaagc ttgggtttaa aagcaaacga aaatctattt tacggaggta
     4381 gtttagaatg aaaaccgcat ttattacagg agctagttca ggttttggta gagcttgcgt
     4441 tgaagctttt atacaagaag gctacaaagc aatcgccctt gctagacgca aagagcgtct
     4501 agaagagtta aaaaatgctt acaaagataa gatttacacg ctttgcatag atgtaagaaa
     4561 tcaaaaagaa atctttgagg ctattgaaaa tttacccaaa gaatttcaag aaattgatgt
     4621 gctttttaat aatgcaggtt tagctttagg ggtagatgaa tttgataaat taaaccttga
     4681 agatattaac actatggtag atacaaacat caaaggattt ttatatgttg caaaagctat
     4741 tattcctata cttcgcaaac aaaaaaatgc ttatattttt aacttaggtt cggttgcagg
     4801 aagaaatcct tattttggag gcaatgtgta ttgtggaacc aaagcctttg taggacaatt
     4861 ttcattggcc ttaagaaatg atcttagagg aagcaatatc aaagtaacaa acattgctcc
     4921 aggactttgc aaaactgaat ttagtgaagt gcgttttaaa ggagatatcc aaaaagctga
     4981 tgcagtgtat gaaaatacgc aatttatcag tgctaatgat attgccaaag tggtaatgtc
     5041 tatcattaac ctaccaagcc atattaatgt taatgaaatc gagcttatgc cggtaacaca
     5101 aacttggaat ggattttata tagaaagaga tgaatgaata aatttttagt tttattgttt
     5161 ttacctttag ttgcatttgc aaactcctca gaagcagctg caaatgctaa tttatttgga
     5221 gcttttacgc ttataccgcc tttagttgct attgctttag cctttatcac aaaagatgtt
     5281 attttgtcac tctttgctgg agttttaagc ggaacttttc tgctcagtct ttctgtaaat
     5341 attttcaaag cacaacattt agcttttgta aattattaca atactacagt agaatctttt
     5401 tcaaaaatta tttcctatat cttaggttca acttcagatc cagtaaatgc aggaatcatt
     5461 ttacaaattc tttgtatagg tggtcttgtg gcactcatca caaaaatggg tggtgcaaaa
     5521 gctgtagcat taaaatttgc caaaagagcc aaatcagctg tatcagctca agttaacact
     5581 tggtttttag ggcttttaat attttttgat gattatgcta atttactgat cctaggtcca
     5641 attatgcgtc ctttggcaga taaatttaaa atttctcgtg aaaaatttgc ctttattatc
     5701 gactctaccg cagctcctgt agcaggaata gctgtaattt ctacttggat aggcttagaa
     5761 gtttctttaa ttaaaaccgc ttatgaacac ataggcatta gcgatattag tgcttttgga
     5821 atttttgtcg aaaccatacc ttatcgtttt tataatattt tcatgctttt ttttgtagtc
     5881 atgactgcaa tcatgggacg tgagtttggt tctatgtaca aggctgaagt gcgtgcaaga
     5941 accacaggac aaattgcacc tctacctaaa tcaggcacac taaatactgc tgaattagaa
     6001 gatcagtttt tagcgccaaa agaaggtatt aaaattcgtg cttttgatgc tattgttcct
     6061 atttttactt taatcatttt agctatatta ggattttatt ttaatggact tagcacttta
     6121 gaaggcgaag aacttgcaaa agcaagtgtc aatcctttgt cttttgaaac ttttagggct
     6181 gcttttggaa atgctgattc ttctgtggtg ttattccaag ctgctttgtt tgctgctatt
     6241 gtagcgattt ttatcggggt gcgtcgtaaa attttcaatc ttaaagaagc ggtagaaact
     6301 tggatatatg gctggaaaac catgattttt accatagtat tgcttttatt tgcttggtcg
     6361 ctttcaagta tagtaaaaga tctaggaact tctttattta tcactagttt gcttgcagat
     6421 aaattgcctg agtttatttt gcctgctact atttttgctt ttgcttcagc catttctttt
     6481 gccataggaa caagctatgg aactatgggg attttaatgc ctttggctgt gcctttagct
     6541 catgaaatcg ccaaaatcaa tggcatggat gcaaacgcta tgcatcatta tatggttatt
     6601 aatataagct gcgttttaac aggtgcgatt tttggaaacc attgttcacc aatttcagac
     6661 aatgtaatcc tttcatctat gagtgcaaaa tgcgatcata tggagcatgt aagaacacag
     6721 attccttatg ctttatttat ctgtggcatt tctttaatcg ctggatatat tcctgtatct
     6781 ttaggactta gcgtttggtt tgtcttgcct ttaaatttca tacttattgc acttttacta
     6841 agacttatcg gaaagaaagt tccatgagtc ttgaaaattt tggaaatttt ctcactttag
     6901 atgaaaaaca ttctttcata aaaaaatatt ttaaagaatt ttatacaaag gattttaaac
     6961 tttttgcttc aaaagataag cattatcgta caagagctga actttcattt tatcatgaaa
     7021 acgatacgct tttttatgcg atgtttgatc caaaaaacaa aaaaaagtac attatagaat
     7081 atttagattt tgccgatgaa aaaatttgtg ctt
//
LOCUS       DAQSLY010000081         7029 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.081, whole genome shotgun sequence.
ACCESSION   DAQSLY010000081 DAQSLY010000000
VERSION     DAQSLY010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7029
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.081"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1076
                     /gene="nusA"
                     /locus_tag="R2H98_001311"
     CDS             <1..1076
                     /gene="nusA"
                     /locus_tag="R2H98_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEE9024182.1"
                     /translation="DIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEFFVDPK
                     NLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENLGRTAV
                     NTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRAFLPRK
                     NRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDGYVNII
                     GCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFTNESEI
                     LISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIELNELS
                     SSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(1092..2279)
                     /locus_tag="R2H98_001312"
     CDS             complement(1092..2279)
                     /locus_tag="R2H98_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9024183.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLARLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INNKNLFYMYLGQGFGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     AYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            2353..3399
                     /locus_tag="R2H98_001313"
     CDS             2353..3399
                     /locus_tag="R2H98_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEE9024184.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDKEIIDHFE
                     YLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            3399..4619
                     /locus_tag="R2H98_001314"
     CDS             3399..4619
                     /locus_tag="R2H98_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEE9024185.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKILQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELSK
                     NIKDEILLRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETMNAYIKKHQ
                     ELLNISFASIQNEN"
     gene            4609..6432
                     /gene="recG"
                     /locus_tag="R2H98_001315"
     CDS             4609..6432
                     /gene="recG"
                     /locus_tag="R2H98_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEE9024186.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVEKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLSKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLVSASDNIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKAKKDLAKKLPN"
     gene            complement(6429..6812)
                     /gene="ctb"
                     /locus_tag="R2H98_001316"
     CDS             complement(6429..6812)
                     /gene="ctb"
                     /locus_tag="R2H98_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEE9024187.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            6907..>7029
                     /locus_tag="R2H98_001317"
     CDS             6907..>7029
                     /locus_tag="R2H98_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEE9024188.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKI"
BASE COUNT         2662 a          901 c         1190 g         2276 t
ORIGIN      
        1 cagatattat cgaatctatt gctaatgaaa aaaatttaaa cttagagaat gtaagagaaa
       61 aggtagctac cgctttaatc aatactgcaa aaagaattta tggacaagaa tatgagtttt
      121 ttgtggatcc taaaaattta aatctttatc aaaaaattac catagtagca gataatgacg
      181 agagattgca aaataaaagt gagagtttta tcgcgttaag taaggcaaaa tcagaagctc
      241 cagatgttga aataggagat gaattaacct atgaatgttc tttggaaaat ttaggaagaa
      301 ctgcggtaaa taccttgcat aaagaacttg aatatcatat acaaaaatta ttagaacaaa
      361 ctatttttga aaaatataaa aacaaagtag ggcaaatggt ttttggtaca gttgttagag
      421 tggataatga agaaaatact tttattgaaa tagatgaatt aagagctttt ttaccgagaa
      481 aaaatcgcat taaaggggaa aaatttaaaa taggtgatgt ggtaaaagct gtgatacgcc
      541 gtgtttatac agataaaggt attaaaatcg agcttagtcg tacaagtcct aaatttttag
      601 aatgtttact tgaagctgag gttccagaaa tcaaagatgg ttatgtcaat attataggat
      661 gtgctagaat tccaggtgaa agagcaaaaa tcattcttca ggccaatgga gcaaatatcg
      721 atcctgtagg tgctacagta ggtgttaaag gtgtaagaat taatgcagta agcaaagagc
      781 ttcataatga aaatattgat tgtatagaat ttacaaatga gagtgaaatt ttaatttctc
      841 gtgccttggc tcccgctatt gtaaattctg taaaaattga agataaaaaa gctattgtaa
      901 gtttaaatag cgaacaaaaa agcaaagcca taggaaaaaa tggtattaat attcgccttg
      961 cttctatgtt aagtggttat gaaatagagc tcaatgaatt aagctcatcg cagctaaata
     1021 atgccatcag caatgaagaa gcaatgaaaa atcttcaaga tttgtttaaa atttaaaata
     1081 tttgtgaatt ttcacaaata ttttttataa aaccacttcc aataaaatgc cgcaaagata
     1141 aaaatcatac ccaataagcc tgtaattagt tctaaactca agcctatttc aaataaaaag
     1201 cccataagca ttgaaataat agcgctaaaa ctaagataaa tcatatctgt ataagcgatc
     1261 actctaccat gatatgcttt gtcagcattt ttttgtatca tagtgtaggt gtaagcccaa
     1321 agtgctgagg taaaaaaacc tgcaccgatt aaacctaaaa aagaaatata aaaattaaat
     1381 tgagttaaag cccaaagtat aataccaaaa ccttggccaa gatacatgta aaataaattt
     1441 ttattattaa taaatttact taaaaccata ggtcctatag ctaaagaaca agcacgtacc
     1501 gcatttaaaa accctattac taaagcagca gataaaactt ctttatattg atgttgcgct
     1561 aaaagcgtaa ccaaggtttc ataagcagtt aaacctataa aagcgtgaag caagataaga
     1621 tgaaaaatta tcttattgtt taaaacatag aaaaatcctt cttttatcat ggtaaaaaag
     1681 cgactttgtg ttttttgatg aaaatcagga atgcttaatc ttgctaaaaa agaaatgcct
     1741 atgagtataa gtatacagtc aaatagaaaa gcggttttaa ctcctagaaa ataaataaaa
     1801 attcccgcac ttgccatacc tgctgtataa gaaatcgccc aaatgacact gtgcatttca
     1861 ttagcgagtt taagttcttg aggagttaaa attttggcca ataaactcat ttcagcttga
     1921 aaataaatcg aagcaacaca aagtcttatg aaaattaaaa taaataaaag ccaaagcata
     1981 ctaagacttg tgacaaaaat aagacaaaaa atagaaatta attctatgct aatcatgctg
     2041 agtaaaagtt ttttaggttt atttttctct actatgacgc cattaatagg agcaagtaaa
     2101 actccaggta aaaaagcaag catagcactt gtagctgttg cccaagtagg agcattaagc
     2161 tcaaccaaaa gggtaaaaac tcctgtttga gaaaaccatg ctccaaaata tactataaac
     2221 tgaaccgaag ctaatattct gatattttta ttatttttta atagttcaat gtaattcata
     2281 agcgaaacta tagcataatt tatattttaa atgctataat tattttaatt atgtaaaaaa
     2341 caaggaaaaa ttttgaaaag actggataaa aaagaagctt tagatttatt acaccatgca
     2401 agtttaacag aacttggaga aatggcttat aaaagaaaat tagaacttca tcctgaaaaa
     2461 atcaccactt ttgttgtaga tagaaatatt aattatacca atgtttgttg tattgattgt
     2521 tctttttgcg ctttttatcg ccatcataaa gaagatgatg cttatatttt aagctttgaa
     2581 gagataggca aaaagataga agagcttgaa gctatcgggg gtacgcaaat tctttttcaa
     2641 ggcggggtgc acccaaaatt aaaaatagaa tggtatgaag aattagtttc ttggataaaa
     2701 gaacattatc caaatatcac tgtacatggt ttttcagcgg ttgagatcgc ttatatcgca
     2761 aaggcatcta aaatttcaat tactgaagta cttcaaagac tacaagctaa aggtttattt
     2821 tctataccag gagcaggtgc tgaggtgcta agcgataggg tgcgtgatat tatcgcacca
     2881 aataaatgtg atacagctac ttggttagaa gtacatcgcc aagctcataa aatcggtatg
     2941 aaaagtacag ctactatgat gtttggaacg gttgaaaatg ataaagaaat catcgatcat
     3001 tttgagtatt tgagaaaatt gcaagatgaa acagggggat ttagagcttt tattttatgg
     3061 agctttcaaa gtgataatac tgctttaatc caaaaacatc cagagattat gaaacaaagt
     3121 tctaacaagt atttaagact tttagcttta gcaagacttt atttagataa ttttaaaaat
     3181 ttgcaaagtt cttgggtaac tcaaggctcg cttataggtc aacttgcttt aaaatttggg
     3241 gccaatgatt taggctcaac catgatggaa gaaaatgtag taagtgccgc aggagcaagt
     3301 tatagaatga atcaagatga gatgataagg ctgattagaa gtttaggcga aaatccagct
     3361 aaacgcaata ccgcttatga aattttagaa aggttttaat gcagtattta gagagtaggg
     3421 gtattaaaat cccttttatt tttgaaaaaa attctgattt tcctattgtt gttttaaagc
     3481 ttgtttttag aaattgtgct agaagttatg atgaaatagc aggcttagct aagatgtttt
     3541 cacgtatttt aaatgaaggc gtggatgata aattttttaa ggatttagaa tttagagcga
     3601 taaatttaga ggcaagtagt ggttttgaaa gtttggaaat caatctttct tgcttgaaag
     3661 aaaattttga ttttgcttta aagagtttag aaaaattgct tttaaaacca agaatagaag
     3721 aaaaaatttt gcaaaaatta aaaatcaatg ccttaggtga acttgcgagt aaaaatagtg
     3781 attttgatta tttagcaaaa aatttactca atgctcaaat ttttaaatgt aaagaatttc
     3841 aaagtccaaa cgatggagat gaaaaaagta tagaaacttt gtctttaaaa gatttacaaa
     3901 atttttataa aaattttatt catcttagtg atttggttgt gattttagga ggagatttag
     3961 aagaaaaaca agccaaggaa gatcttttaa aactcttatc aaaacttcaa ataggcaaaa
     4021 aaaatactcc aaaaaaatat gagttaagca aaaacatcaa agatgaaatt ttgctacgcc
     4081 cagaaagtga acaagcttat atttattttg ctacaccttt ttttgctgat tttaaagata
     4141 aggatttata tcttgcaaaa attgcattat ttgttctagg gcaaggagga tttggttcaa
     4201 ggattatgga agaaattcgt gttaaaagag gtcttgcata ctcagcttat gctatgcttg
     4261 atatgaatat gtctttttct agagtttttg gatatttaca aactaaaaat gaaagcgcta
     4321 aagaagctaa aaaaatcgta aaagagcttt ttgaagattt tataaaaaat ggcatgactc
     4381 aaaatgaact tgatcaagct aaaaattttc tcataggatc aactcctttg cgttatgaaa
     4441 gcttaagcaa gcgtttatct atgtctttta acgaatttta tcaaggttta aatttgggat
     4501 attataaaga agagttaaaa cttatggaaa aggttaaact tgaaaccatg aatgcttata
     4561 ttaaaaaaca tcaagagctt ttaaatataa gttttgcaag catacaaaat gaaaattaaa
     4621 gaaagtgatt ttgaattttt taaaaaatta aaaattagaa gtgctattga tttagcgctt
     4681 cttttaccta aaaaaattga aaatttaaat ccaagtaaaa atcctaaaga aaatgaaatt
     4741 tgcacccaaa aaatcactat aaaaagcgtt agttcaagaa aaaatcaact ttttggttta
     4801 ggtttttgtg aggaatggca agaaaatatt tcttttgtgt tttttcatcc tagagcttgg
     4861 cattttggta tttgtaaggt agaaaaagag cttattttta atgctaaact ctcgcatttt
     4921 aatcacactt ggcaatttaa caatcctaaa attttaactt cttttgaggg ttttagtcca
     4981 aagtatcaaa ttttaggttt aaaagataca aaaattgctg cttttataca taaatatctt
     5041 aattatgaaa atttaaaaga aagtggcata gaggataaat atatacattt tcttttaaat
     5101 ttgcatgctt atgatgaaaa aagttttttt atgtttgaaa atttgcaaaa ttttagcaaa
     5161 gatttaaaat atatagaaat atataatttt ttaaagcgtt taaaagctaa aaaaacgcat
     5221 tttaaagctc atcaaatcaa tgtttttaat atagccaatt ggcttaaaga tttgcctttt
     5281 tctcttacta aagatcagct taatgcctta aaagacatag aaaaagattt acactcaaaa
     5341 gaagccaaaa ggcgtgtgat tatgggtgat gtagggtgtg gtaaaacctt ggttttactt
     5401 ggtgcggctt tgatggttta tcctaagcaa gctattttaa tggcacctac tagtatttta
     5461 gcgtatcagc tttatgaaga ggctaagaaa tttttacctg attttatgaa tattttgttt
     5521 attaaagggg gtaaaaaaga aaaagattta gaacaaaata tccaaaaagc aaatcttgtt
     5581 ataggcactc atgctttaat tcatttagaa agccataatg ccgtacttgt aatgatagac
     5641 gaacaacatc gttttggatc agctcagcgt gagaaaattc attctttaag taaacaagaa
     5701 tttgcccctc attttataca gttttcggct acgcctattc caagaacttt aagcatgata
     5761 caatctgaac ttttaaattt tagtttcatt aaacaaatgc cttttaaaaa agatatcaca
     5821 acttattgta tacaaaatga aggcttttct aagcttagcg agaagatcaa agaagaaatc
     5881 gctaaaaatc atcaaattat cattatttat cccttagtga gtgctagtga taatattcct
     5941 tatctttctt tagagcaggc taaagaatat tggcagagtc actatgaaaa agtttttgta
     6001 actcatggga aagataaaca aaaagatgaa attttagagc gttttagaga tgagggaaat
     6061 attttactaa gcactacagt ggtggaagtg ggcatttctt tgccaagatt gagtatgata
     6121 gtgattgtag gagcggaacg tttaggactt gctactttac atcaacttcg tggccgtgta
     6181 ggtcgtgtag ggcttaaaag tacttgctat ctttatacta agcttaaaga aattccgagt
     6241 cgtttaaaag aatttgctag cactttagat gggtttaaaa tagcagagct tgatcttaaa
     6301 aatcgtttga gtggagattt gctcgatggt tttatgcaac atggaaatga gtttaaattt
     6361 tttgattttt ccaaggatga ggagatttta gaaaaggcaa aaaaagattt ggcaaaaaaa
     6421 ttgccaaatt aatgtccgcc gtacttgtaa agcatatttt gaaaatgtga agctatcatt
     6481 tgtgcacgct gtaaaatgac atttttcatt tcttcattat aaactatatt taaactttct
     6541 tcaaaaagtt ttagccaaat ttcaaaaaac tcttgaggaa aaggaggtag atctaagtgc
     6601 ttttttaagg gttgcccatt ataatcacct tcgcctaaaa gcatgcctgc ccaaaaattt
     6661 cctatttttg ctttatgttc tttccattct tcatcgcttg ttccaatagc attgttaaaa
     6721 ataggaccta aatccttatc ttttctaact ttttcataaa atatttccat gagttttgct
     6781 atgctttctt gattaattgt ttcaaatttc atataagcct ttcttaaatg ttaattttat
     6841 ggcgttaata tagcaaaaat aagataaatt aaatttaaca taagttaaga atggaaatat
     6901 tatataatga aagattattt agaactttta tctagtgtag gaaaattaaa aaaatttcaa
     6961 aaaaatagta ttttatttta tgaaggcgaa gaggctaaaa aattttttat tttactcaag
     7021 ggaaaaata
//
LOCUS       DAQSLY010000082         6969 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.082, whole genome shotgun sequence.
ACCESSION   DAQSLY010000082 DAQSLY010000000
VERSION     DAQSLY010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6969
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.082"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..593)
                     /locus_tag="R2H98_001318"
     CDS             complement(<1..593)
                     /locus_tag="R2H98_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEE9024189.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTA"
     gene            complement(586..2025)
                     /locus_tag="R2H98_001319"
     CDS             complement(586..2025)
                     /locus_tag="R2H98_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEE9024190.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2022..2762)
                     /locus_tag="R2H98_001320"
     CDS             complement(2022..2762)
                     /locus_tag="R2H98_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEE9024191.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            complement(2886..4568)
                     /locus_tag="R2H98_001321"
     CDS             complement(2886..4568)
                     /locus_tag="R2H98_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEE9024192.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4740..5309)
                     /gene="cdtC"
                     /locus_tag="R2H98_001322"
     CDS             complement(4740..5309)
                     /gene="cdtC"
                     /locus_tag="R2H98_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEE9024193.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5320..6117)
                     /gene="cdtB"
                     /locus_tag="R2H98_001323"
     CDS             complement(5320..6117)
                     /gene="cdtB"
                     /locus_tag="R2H98_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEE9024194.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6114..6920)
                     /gene="cdtA"
                     /locus_tag="R2H98_001324"
     CDS             complement(6114..6920)
                     /gene="cdtA"
                     /locus_tag="R2H98_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEE9024195.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAVNGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
BASE COUNT         2289 a         1235 c         1084 g         2361 t
ORIGIN      
        1 tctgctgttc ttgaaggccc tgctataaat aagatattag taggtaaaat ttcattttct
       61 ttttttacta aatttaaagc ttcgctaaga cttttaacaa cattttcttt tttaagcaat
      121 actatgcaaa gtttaggtgc aaggcttagc attctaggtt gggttttact tgaaggtata
      181 agtgcaactc cgtgagagct tacccctgct cttgcgtgaa tgatggaaaa atcactatga
      241 aaaacttcag atcttaaatt ttcgatttct ttatcaaagc aaatcttttt ttctgctttg
      301 atttgttcta aatttaaatt taaatccgct ccataaatca tacttttaaa gccatatttt
      361 gcgacaattt cattgatttt ttcttctaag gtatcttttg tagcattttc aacgatgtat
      421 ttgttatcgc tcattttttg cttcatttct gtaagcatat cttgggttgt ctggatatgt
      481 tctacaggat ctatactttc aatgcgtgtg aaagttgttt ctttgtaagc ttttttaaga
      541 tgttctaaaa tatttgcttt gcttttgctt gaaatttcat cgattttact catagcttac
      601 tccttctagt ttttgcactt ctttataaag atccatttta atttgaggta attctttaaa
      661 agcgtaccat tttttaatca caggcaaaat gcttgcgaaa ttttgtaccg tccagttgaa
      721 ataatgtgct tttgaaagtg aaaaacgcca tttatcgcca ttggttgcga tatttttaaa
      781 ttgtttaaaa gcaaaggctt ctagggcatt gtgatgaaca ttatttgctc ctaaaggtgg
      841 atttttacct tgtcctattt tatcacatct taatttgcga ataagatcag ccaaaggaat
      901 ttggactgga caaacttcag aacaacgccc acaaagtgaa cagaaattca aaatatctcc
      961 tgtatgatct ataccaaaaa tattaggact gattacttct cctataggtc ctggataagt
     1021 ggtttgataa gcatgtccgc cgatttgatc ataaacaggg caaaaattca tacaagcccc
     1081 gcatcgaata caacgcaaag cctcataata atcctcatga gctaacattt tagagcgatt
     1141 gtgatcaaat aaaatcacat gtacttcttt aggaccatct aaatctccat tttttctagg
     1201 gcctgtaatg atattgttat aagttggtat aaattgtcct gtggctgaag gagtaagtaa
     1261 agaaaccata gtagccgcat cttcaaagct ttccatgact ttttctatac cacaaagtgc
     1321 gatatgaata tcaggtgctg tagtgcacat tctaccattt ccttcatttt ctataagcca
     1381 aaaagctcct tctcttgaca tggcaaaatt gaccccacta agtccaagtt ttaagccttc
     1441 aaaatctttt cttaaatgtt ctctagccac cgcatttaaa ctttcgggtt catcgttttc
     1501 taaatttgct cctaattttt ctttgaaaat ttctccgatt tcatggcggt ttctatgtat
     1561 ggcaggtaca actatgtgta aagggggttc ttcattaagc tgtaaaataa gctctccaag
     1621 atcggtttct atagctttta aacctttttt ttctaggtag tgatttaggc ctatttcttc
     1681 acttgccata gacttgcctt ttaaaagctt ggtgatattt ttttctttca tgatttcata
     1741 gacgatttca caggcatctt catcactact tgcccaatgc accttaatgc cattttttgt
     1801 agcatttttt tcaaattcta aaagcctttc ttctaagctc attaaggcat tatttttagc
     1861 ttgcttagct ttagctctta agccctgcca gtctttaaat ctagcatcaa taacattgag
     1921 tctatttttt tgcaaagtat gcatggcagt cattaaattt tcttgcattt gtttgtcatt
     1981 gagtttaatt tgaacgattt gttcgtgagg aattttttga ctcatagtct ctctccttct
     2041 aagcgtttaa gtaaaaagtc atataaatgt atgcctttta tatccaaacc cattcttttc
     2101 attgtgccat ctatatttaa aagacaacct ccatcaccac tgatgagata ttttgcaccg
     2161 ctattttgta tatctttgat tttgcttctt accatagcat ttgaaatttc aggctctttt
     2221 actgaaaagg ttcctccaaa accacagcat tcttcttcgt attgaagttc tactaattct
     2281 acgtttttta gttttttgat aagattttta ctcgcttgta tgcttttttg cactcttaaa
     2341 gcatggcaat tagaatgcca agttactttt ataggtgcac ctttatcttc ataatctact
     2401 tttaaaactt catcaaggta ttgtgaaagt tctatcactc tagagctaaa agtttttatt
     2461 ttggaaaatt caggtctgtt tttaaaaagc tctttatagt catgactcat catacccgca
     2521 caagaaccac tgggtacaac gatgggataa tctttatcaa ataaatctac attatataaa
     2581 gcgatctcac gactttcatc gaaataacct gagttaaaag aaggttgggc gcaacaggtt
     2641 tgattttttt tgaaaatcac ttcaataccc tcacgcctta aaagttttat cgcatttaaa
     2701 acgctttgtt gcatagcagc acttcctaag catgtggcgt aaaaatacac ttttttcatc
     2761 atttttctcc ttttaggata atttaggata aatattctaa tcctgtaaaa ataaaagcaa
     2821 agtaaaattt ctaacaaata ttctaaaaac gaatatttgt tgaaataaaa cttaattttt
     2881 tttaattatt tcactataac ttcagggatg attccttgta agaaaaaagc tataatgcaa
     2941 gtccaaattc ctattaaaat aataaaagct acagaatatt ttaatgtgaa tttgaaaaga
     3001 tcagattctt ttcccacaag tccaaccgct gcacaagcta tagcaatgct ttgtggactg
     3061 atcatctttc caacaacccc acctactgaa ttagctgcta aaaataaagc ttcgctaata
     3121 cctagttttt gagcgcttac ttgttgcaag gttccaaaaa gtaaattagc acttgtatca
     3181 gagcctgtta aaaatacccc tatccagcca atgattggtg aaaagaaaga aaaagcatca
     3241 cctgtgtgtg caaaagcaag tcctaaagta gtgctcatac cactattttt agagataaaa
     3301 gcaaaggcca caaccaaacc tatggtgata caaggtatag ccatttcttt taaggtaacc
     3361 caaaagcatt ctgcagcatc ttcggctttg atttttaaaa tagctatagt tagaaaagcg
     3421 gcaagtaaaa tcgctgttcc tgcttgagct acggtttttc cattgattaa atctacaccc
     3481 aaggccaaag ataaaggctt agcttctcct atgcctgtga tagaagggct taaaattcca
     3541 gttgtgatat tgctaaattg taaagtaata cttgtatagc ttaaaattcc gtccttatca
     3601 aagagagctt taaaccaagg ttgtgtccaa atgataatac aaacaatgag taaaataaaa
     3661 ggtgaccaag cttttaaaat ttgattaaaa cttaaggtgt tatcttgagt gaaattgctt
     3721 tcattgtcaa atctaaaaat attttttggt ttccaaaatt tcaaaaatac agtcgtaact
     3781 gctaaagaaa ccacagctga aataatatca ggtaattccg ctcctaggtg atttgagctt
     3841 aaaaattgag tagttgtaaa acttagcgcc gcaactaaaa tagctggaaa agtttcttta
     3901 atacctttaa atccatccat taaaaaaact atgaaaaaag gtatagtaag gcttaaagga
     3961 actagcattc tacctaccat ggcagaaact gaatgctgtt ctatgccgac aagatttgcc
     4021 atagcaataa taggaattcc caccgcacca aaagcaacag gagcggtatt tgcgataaga
     4081 caaagccctg cagcttgtaa aggacgcaag ccaagtccta ctaaaagtgc agcggttata
     4141 gccacagggc caccaaaacc tatagcaccc tctaaaaatg aaccaaaaca aaaacctatt
     4201 aaaatcactt gaattctatg atctggagta atgctcatca cgcttttttt aatgatttca
     4261 aaagaacctg acttgataga aagtttgtaa agaaagattg ccgcgatgat aatccaagct
     4321 ataggccaca taccatttgt aaagccttga ataaaacttg cacccactaa attccaaggc
     4381 attttatagg caaataaagc tactaaagta gcaagtataa cagttaaaaa acctgcttga
     4441 tagcctttaa gttttaaaac aaccaaacaa actaaaaaac atagtatagg taaaaatgcc
     4501 actaaagcac ttagccaaat gtttgaaaaa gggtcataaa tttgttgcca tgttaaaatt
     4561 tgttccaatt tttcctcctt gataattatt atgtataaat ttattgtaac aaaaaattaa
     4621 attaaaataa aagaattata gagtaaggta aattacattg tattattatt aattattttg
     4681 tgtattttag taatatcata aatattaaat aaatataaaa atagaacaag ataaaaatct
     4741 tattctaaag gggtagcagc tgttaaaggt ggggttataa tcattagttc atttacttca
     4801 gcaaaaaaaa taggatctag ggtgcaaggg gctattccaa agcgtttttg tataggaata
     4861 tttggattaa aaaaagttac tatacattca tcagattcca aaactaaaga acgaatttgc
     4921 acagctgaag ttgttgttgg cattatagaa aatacagttt ctaatttacc atcttttaga
     4981 tcatcttgac aagattttgc tccaaaggtt ccatcttcta agatggctaa acaaagatcg
     5041 ctttcttttg gatttgtaaa ttgcacataa ccaaaaggaa gttcatcagc taatttatct
     5101 ttttgtttta actcatcgct taaaacaatt tctttaatat tccaattttg atcaatagga
     5161 tcttttgagg tatccctaaa ggcgcttaaa aaaattcccg tttctaagct tcttatagaa
     5221 accatttcgg taaaatcttt caaatctcca gtaggagttg caaaggctaa agttataaac
     5281 ataaaaaaca aagtaataat ttttttcata ttaaatgtcc taaaattttc taaaatttac
     5341 tggaaaatga tctgaaacta tatgagatct taaacttgca agcattaaaa ttgcagctaa
     5401 aagcggtgga gtataggttt gttgtctatt tgaatttcct gtaattgcat aatcaagagt
     5461 ccctccgctt gcttgagttg cgctagttgg aaaaaccact ctaattctat ttgctaattc
     5521 tctatccact gtacttgtta tagtagaagg atcacggtta aaatcccctg ctatcatcca
     5581 gttaacttga ggcatatttg caaaatgtgc atctacagct gtgataattg ctcctacatc
     5641 tgttcctcca ttagctaaag catggatatt gaaaaaagca tcatttccat tgcgaattcc
     5701 tataatgggt cttgaaactg tagtaggtgg aggtaaaaca atcacttctt cagcttgcat
     5761 tcttgaaact atagctaaat ttacacgatt agctcctaca tcaacgcgag aataataaat
     5821 aaaaacccta tcaggccttg aaagagttcc taaattccac tcatattcat caataggtgt
     5881 tccaccttgt tgcacatggc gtcctgttgg agtggctgtt cttggtaaag ttcctgcttc
     5941 ttgtatcatt aagatatcta aggggtttgc tccacttaca agttgtctta cgctaacact
     6001 ccatttgctt tctgtggctg cggatgagcc ttgcaaattc caagtgccaa cattaaaatt
     6061 ttctaaattt gcaaaagcaa ggttaaaaga taaaaataaa catataattt ttttcatcgt
     6121 acctctcctt ggcgatataa aggttttgca gtaaaaggcg gagtagttaa aaaccattgt
     6181 tgatcaaaat tatctttttt tgcacactct acggtaaaaa ttttaaaaac cttgtgaaaa
     6241 tcaccataaa gatttgtaat aggtgcttgt atgcattttc catttcctaa atttttaatt
     6301 tgaaccgctg tattgctcat agggataagt ttccacattt gtgcgtgatt gcttgcatcg
     6361 caaggataat ggacaattcc attaccataa gcattaagac aagtattggt tttggcattt
     6421 ttaatcattg caaaatcatt aggataaagc aaaagttgcc aaactctagc atcgccaaat
     6481 cctttactat cgattaaagt atagccccaa atccaatttc cttgtgctaa agcccaaacc
     6541 gttaaagctg ctccgctagg gcctaaaatg gttaaaaaat cagaaaccgc agggcgattt
     6601 tcaaaaatta aaacatcatt aaaagcttcg tctttaaagc gaggattgat cccatttact
     6661 gcattattgt tggcactatt gcttgttcta gttaaaggtg gggtaatagg agtaataggt
     6721 actaaatcag caccgctaat taaacttgga atttcttgat tggtaggaaa agtaggttca
     6781 agtcctagtt ttaaaggatc agtatcttca aattcgccaa atgaacgccc caaaggattt
     6841 acattttcaa atttagaaga acatgcataa agaaaaaaag tcataaaaca acataaaata
     6901 aaaactataa ttttttgcat taaaaacctt gatatgtatt taaattttta agaaaataat
     6961 aacataaat
//
LOCUS       DAQSLY010000083         6762 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.083, whole genome shotgun sequence.
ACCESSION   DAQSLY010000083 DAQSLY010000000
VERSION     DAQSLY010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6762
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.083"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..931
                     /locus_tag="R2H98_001325"
     CDS             <1..931
                     /locus_tag="R2H98_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024196.1"
                     /translation="SLEKPLMKLRLNAIFRKNHNLDFNDFKIRLARDLFCFALGLKLF
                     ENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFEFINAKARELIFSKEDKNMARISY
                     LVSRYKEKAFILELSKDYEDILLINKELNLLKLSLPKHSKELYEEIKKDEIGARLLEN
                     FNKEFPLLDENFELQNNFYSLLGLLGRVLNLGRNLQESASELLKIADESKMPRGVKID
                     YRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGAVESLAYFLRDTYDELREKKQSDL
                     ALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRI"
     gene            912..3101
                     /gene="hypF"
                     /locus_tag="R2H98_001326"
     CDS             912..3101
                     /gene="hypF"
                     /locus_tag="R2H98_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEE9024197.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGVE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRAHTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFMQSAKFLKVGKILA
                     IKGIGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3179..3922
                     /gene="hypB"
                     /locus_tag="R2H98_001327"
     CDS             3179..3922
                     /gene="hypB"
                     /locus_tag="R2H98_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEE9024198.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            3922..4203
                     /locus_tag="R2H98_001328"
     CDS             3922..4203
                     /locus_tag="R2H98_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEE9024199.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4187..5278
                     /gene="hypD"
                     /locus_tag="R2H98_001329"
     CDS             4187..5278
                     /gene="hypD"
                     /locus_tag="R2H98_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEE9024200.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5275..6249
                     /gene="hypE"
                     /locus_tag="R2H98_001330"
     CDS             5275..6249
                     /gene="hypE"
                     /locus_tag="R2H98_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEE9024201.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADIKSDCKALNKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDGLKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6249..6593
                     /gene="hypA"
                     /locus_tag="R2H98_001331"
     CDS             6249..6593
                     /gene="hypA"
                     /locus_tag="R2H98_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEE9024202.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         2391 a          828 c         1316 g         2227 t
ORIGIN      
        1 aagtttagaa aaacctttga tgaaactaag gcttaatgcc atatttagaa aaaatcacaa
       61 tcttgatttt aatgatttta aaatcagact tgctagggat ttattttgtt ttgctttagg
      121 tttaaaactt tttgaaaatg aatataaatt tttgagcgta aaaaagatag aagaatatca
      181 aaaagatttt tatatcagtg ctttagatga gcaagtggtg gttttggaag gctttgaatt
      241 tatcaatgct aaggcaagag agcttatttt ttctaaagaa gataaaaata tggcaagaat
      301 ttcttatctt gtaagccgtt ataaagaaaa agcttttatt ttagagctaa gtaaggatta
      361 tgaagatatt ttgcttatca ataaagagct taatttactt aaactttcct taccaaaaca
      421 cagcaaagaa ctttatgaag agattaaaaa agatgaaatt ggtgcaaggc ttttagaaaa
      481 ttttaacaag gaatttcctc ttttagatga aaattttgag cttcaaaaca atttttattc
      541 cttacttggc ttgctgggta gagtgctaaa tttgggtaga aatttacaag agagtgctag
      601 tgagctttta aaaatcgctg atgagtcaaa aatgcctcgt ggagtaaaga ttgattatcg
      661 tttgaaagaa gataaaagtt ttgattatac aagaacctta agatctgcca tgagttttat
      721 gttagcaggt gtagatagtg ctaatatcgc ttatggagcg gttgagagtt tggcttattt
      781 cttgcgtgat acttatgatg aattaagaga gaaaaagcaa agcgacttag cgcttataag
      841 cggctctttg tttgaacata aatctttact taaaaatact ttaaaacatc ttaaaaattg
      901 tcagttaagc gatgtgccac ttaggatata agatcaaaat ttcaggtcta gttcaagggg
      961 tgggttttcg ccccttagtt tatgaactag ctttgaaatc aaagcttttt ggagaagtaa
     1021 gaaatgatgg ttttggggta gaaatcatcc ttgcttgcac tcaaaaagaa tgtgaaaatt
     1081 tcatagaaaa tttaaaaaat catctcccgc ctttagcaag aatagatcag cttataatca
     1141 cgcaaatttc tatttcaaac tatgaaaatt ttagcattac tccttcttta gagaatacaa
     1201 aaagcacgcc tatgttaagc gattttgcgc tttgtaagga gtgtaaaaaa gaattttttg
     1261 atgaaaaaaa tccacgcttt ttgtatccct ttatcacttg cacacattgt gggccacgct
     1321 ttagtattat aaaaagtctt ccttatgata gagcccatac ttccatgcaa gaattattga
     1381 tgtgtgagtt ttgtaaaagt gaatatgaag atcctaaaaa taggcgtttt catgcccagc
     1441 ctattagttg tcctaaatgc aaaatcaatg tttttcttaa aaatccaaag ggtgaaattt
     1501 tagctaaaga tcaagaagct tttatgcaaa gtgcgaagtt tttaaaggta ggtaaaattt
     1561 tagccataaa aggcataggt ggttttcatc tcatgtgcga tgcttttaat gaagaagctt
     1621 taaaaactct aagacttaga aaaaatcgcc ctaaaaaacc ttttgctttg atgtgtaaag
     1681 atttacaaag tgctaaagaa cttgccttta tagatgaaaa agaagaagct ttgcttggtg
     1741 gggttttagc tcctattgtg attttaaagg caaaaaaagc cttttcttta atcgctcctg
     1801 atgttgataa aatcggtatt atgttagctt atacaccttt acatcttttg ctttttgagt
     1861 attttaaagg aagccttgta gcaacgagtg caaatttaag cggagaaagt attattaaag
     1921 atgagtttaa tttgtgtaaa aaacttgata aagtttttga tttttatttg gattatgata
     1981 gggagattat caatgcaagt gatgacagca tagctcaagt ggtaaatggt gaaactatgt
     2041 ttttgcgtac ttcaaggggc ttaaatcctt tttatttgga aagaaatttt aataaaaaag
     2101 gcactttttt agctttgggt gcggaactta aaaatgaatt tgtgattttt tatgaaaata
     2161 aacttttaat ttctccttat ataggcgatt tgaaaagtct tgatgtgcat gagagatttt
     2221 ttaaactttt agaatttttt aaacaaaatt atgatttgaa atttgatgcg attttgtgcg
     2281 ataaacaccc gcattttagc tatgcaaaag aatttgaaga aaggattaaa atttctcatc
     2341 attatgcgca tttttgtgcg gcttattttg aatacgaaga aaattttgca aaagatgaaa
     2401 aggctttagc ttttatttgt gatggaacag gttatggcga agatggtaaa atttggggtg
     2461 gagaagtttt tgtaggaaat ttaaaagaat atgaaagaat tgcacatttt gaaaatttca
     2521 ctcttataaa tagtgatatt aaaaatatac aaaatttagc cttaagtctt atttttcatt
     2581 atgatttaga agataaggct aaggattttt tagcaaaaat tccaaaaatt aaacttaaaa
     2641 atcttaaaaa aatttattct cattctaact tacaaacaag ttctttagga cgcattatcg
     2701 atgcttttgg aagtattgtt tttaacttag aaaaaagttc ttatgaagct caagttggct
     2761 taatgtgtga agctttttat gataaaaatc ttgatttttc ttataagctt tttgtagaaa
     2821 aagggcaggt taattttaaa aatttaatcc taggggcttt gcaagatgaa aaaactaagg
     2881 cgattacagg tatgtttaat gccttggcaa attttatcat agattttagc aaagattatg
     2941 atttaaaagt gcttttaagc ggaggggttt ttcaaaacaa aaccttgctt gaaattttaa
     3001 aagctaaaaa ttttgatttt tttatacctt taaagtaccc ttgtaatgat agctccatag
     3061 ccttaggaca aatggtgcat tttttaaatt tagaaaaata aagcaaatat tctaaaaact
     3121 cataattttt taatgctttt aaggttaaaa tgaaacaaaa aatatagaag gaaagaaaat
     3181 gtgtaaagat tgcggctgct ctataaattc aagccatacg catggtcatc atcacgacca
     3241 ccatcatgaa aatccaagtt taaaagaaag caaaaccata gaagtgattt ctaaaatttt
     3301 aagcaaaaat gatgaagaag ccaagcataa tagggcgcat tttaatgaag caaatacact
     3361 ttgtatcaat ctcatgagct ctccaggaag cggaaaaacc acgcttttag aaagcacgat
     3421 taaggctttg aaaaatgaac ttaaaattgc tgtgattgaa ggggatttag aaaccaataa
     3481 tgacgctcta agggtaaaaa atgccggagc tttggcgtat caaatcacta caggacaaag
     3541 ctgtcatttg gacgctttta tggtgcatga ggctttgcat catttagcca ttgatgatgt
     3601 ggatttgctt tttatagaaa atgttggaaa tttggtttgt cctgcaagtt atgatttagg
     3661 agagcattta aatgtggttt tgctttctgt taccgaagga agcgataaac cgcaaaaata
     3721 tcctgtgatg tttaaaaagg ctgatatagt tttaatcaca aaggtagatt tggcccatca
     3781 ttttgatttc gatattaaag aggcgactag gttgattaaa gaattaaatc ctagagcaga
     3841 tattatcacc cttgatgcaa aaaatggcac caatatggag ctttggtata aggtgcttaa
     3901 acttaaaaag gagctttttt aatgtgtttg tctatacctt ctgaaatttt agaaatcgat
     3961 gagttaaaca atgctttagt acaaacttta ggcgtgaaaa gaaaagttaa tttggatttg
     4021 attgatgaac ctttaaaaca aggcgattat gtattaatcc atgtaggcgt tgctatggaa
     4081 aaaatcgaca aagaagctgc actagaaagc attaaaacct atcaagaaat agtagaaaaa
     4141 atgaatagtg gagagataaa aagtgatgag ggagatttgg gtttaaatga atttcatcga
     4201 tgaatttaga gataaagaaa gcattttagc tttaaaaaaa ctcatagaac aagaacttaa
     4261 aaatcctatc aatatcatgg aaatttgcgg tgggcatacg catagtatca tgaaatatgc
     4321 tttgccttct attttgccaa aggaaattaa ctttatccat gggccaggat gtcctgtttg
     4381 tgttatgcca agagttcgca ttgatacagc tatcaagtta gcctccatga aagatacgat
     4441 tttttgtact ttaggggatc ttttaagggt gcctggaagt gaaatttctt tactggattt
     4501 aagagctaaa ggggctgatg ttagagcgct ttattctccg cttgaggttt tggaaattgc
     4561 taagcaaaat ttaaacaaaa atatcatctt ttttgctata ggttttgaaa ctactacgcc
     4621 tatgagtgct ttacttcttc aaaaggttat agaagaaaaa ataaataatg tcttttttca
     4681 tatcaatcat atcacagttc cagcacctgt agaagcgatc atgaatgatg aaaatgtaaa
     4741 aatcaatgct tttttaggtc cttctcatgt gagtgtgata acaggttatg gtatttatga
     4801 gcctttagca gcaaaattta aaacccctat agcggtgagt ggttttgagc cagttgatat
     4861 tttagaaagt gtgttaaata tcataaaaca aagcaatgaa ggcactttta aagtgtataa
     4921 tcaatacaaa agagccgtaa gcaaagaagg caatgttaaa gcacaaaatt tagtaaaaaa
     4981 atactttagg gtgtgtgatt ttgaatttcg tggcttagga cttattaaag atggaggctt
     5041 ggagttaaaa gaagaattta gcgcttacga tgcgagtaaa aaatttgatt gtacggtgca
     5101 aagtaaaaat gaaagcaaag cctgtatttg tgggcaaatt ttaagaggtt tggccaagcc
     5161 ttatgattgt aaggtttttg gtaaggcttg tacgccaaga agtcctatag gaagttgtat
     5221 ggtttctggc gagggtgctt gtgcggcgta ttataaatac tcaaaggtga atgcatgaaa
     5281 aatatttcct tagcccacgg aggtggcgga gaagagatga atgagctttt aactaagctt
     5341 tttaagatct ttgataatga aattttaaac gcaaataatg atgcggcgat tttgggaaat
     5401 ttggctttaa gcacggattc ttttgtttta agtccgattt ttttagatga agaggttaat
     5461 ataggcaaac tttgtgtttg tggttctatt aacgatgttt tgatggtggg tgctaagcca
     5521 aaatatctaa gcttagggct tatcttagaa gaaggttttg agctagaaaa attagaacgt
     5581 attttaaaaa gcattaaaga agaatgtgaa aaatgtggag ttatgttagt ttgtggcgat
     5641 actaaagttg ttcctaaggg taaagcagat gaaatttata tcaacactac agccttaggt
     5701 gaaattattt ctaaaaaaga aagtaaaaat atcaaagcag ggcttagcat acttctttca
     5761 ggcgatatag gaaggcatgg agctagtgtt ttaatcaaaa gaaatgagct agaagctgat
     5821 attaaaagtg attgcaaggc tttgaataaa gaggttttag agcttttaga aaaagatata
     5881 aaggttgtgg ccatgagaga tgctactcgc ggggggctta gtgcggtttt aaatgagtgg
     5941 gcaaagcaaa gtggaaatga tcttttgatc tttgaagaaa aaatcatcgt tcaagatgag
     6001 gttttaggac tttgcgagct ttttggttac gaagcgtatg agcttgcaaa tgaaggcact
     6061 tttatacttt gtgtggaaaa agaagatggg ttaaaagcct tggaaattct aaaaaaatac
     6121 aatgtaaatg cgagtattat aggagaagtt ttagaagaga aaaaagcacg cgtgatctta
     6181 caaaacgctt atggagcaaa acgcttttta gaaagcccta aaggcgaact tttaccaaga
     6241 atttgctaat gcacgaatta agtatagtag aatctttaat cgaactttgt gaagaaaatg
     6301 ccttaaacaa taaggcttgt aatgtgcaag aaatttatgt aaaaatcggg cgtttaagcg
     6361 gtatagaagt ggatcttttt aagcgttgtt ttgaaacttt taaagaaaac tcaaatattt
     6421 gcaaaaatgc taaacttttt atagagcttg ctccgcttga aattttatgc ttaaaatgcg
     6481 atcaaacaag tattttagaa gaaaatgttt ttaagtgtcc taaatgtcaa agtatagaat
     6541 ataaaatcat acaaggtgag gacttacatc ttatgcgact tgtgatgaaa taatatattt
     6601 ggcgtttttg ttacaatagt aaatatttta tcgatattat tattttaata tttaacaacc
     6661 aagctaaaaa aatcataaat tttgaaattt tatctaaaaa tgcaaaaact aaaaaaatat
     6721 atttttaaat ttattttaaa taaaatttaa aaatattata aa
//
LOCUS       DAQSLY010000084         6748 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.084, whole genome shotgun sequence.
ACCESSION   DAQSLY010000084 DAQSLY010000000
VERSION     DAQSLY010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6748
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.084"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..361
                     /locus_tag="R2H98_001332"
     CDS             <1..361
                     /locus_tag="R2H98_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEE9024203.1"
                     /translation="INKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIR
                     SQKGKEKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFA
                     MLEEIKTNLDKTLSIQD"
     gene            448..825
                     /locus_tag="R2H98_001333"
     CDS             448..825
                     /locus_tag="R2H98_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEE9024204.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            834..1385
                     /locus_tag="R2H98_001334"
     CDS             834..1385
                     /locus_tag="R2H98_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEE9024205.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            1396..1656
                     /gene="rpsR"
                     /locus_tag="R2H98_001335"
     CDS             1396..1656
                     /gene="rpsR"
                     /locus_tag="R2H98_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEE9024206.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(1716..4091)
                     /gene="lon"
                     /locus_tag="R2H98_001336"
     CDS             complement(1716..4091)
                     /gene="lon"
                     /locus_tag="R2H98_001336"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEE9024207.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFILTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELFIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(4108..4755)
                     /locus_tag="R2H98_001337"
     CDS             complement(4108..4755)
                     /locus_tag="R2H98_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEE9024208.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETILIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            4916..5305
                     /gene="fliW"
                     /locus_tag="R2H98_001338"
     CDS             4916..5305
                     /gene="fliW"
                     /locus_tag="R2H98_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEE9024209.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            5305..6036
                     /locus_tag="R2H98_001339"
     CDS             5305..6036
                     /locus_tag="R2H98_001339"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEE9024210.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            6033..6335
                     /locus_tag="R2H98_001340"
     CDS             6033..6335
                     /locus_tag="R2H98_001340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024211.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            6332..>6748
                     /locus_tag="R2H98_001341"
     CDS             6332..>6748
                     /locus_tag="R2H98_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024212.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKI"
BASE COUNT         2429 a         1100 c          865 g         2354 t
ORIGIN      
        1 aattaataaa attttaacta aaaaatgtca tggtttgcgc cctgttgctt tacttataga
       61 atgctctaag atgctttgtg aaattttaaa acttcaagct actttaggtg tacatgaaaa
      121 aaatcaaatc cgttctcaaa aaggaaaaga aaaaggctat tttgtagatt atcaaaaaat
      181 ttggctagaa aatggtggag aattaataaa aatcaataaa cacaaatact ataaactcca
      241 ccactctcaa aaaaacctag aagaaatccc ttcgcaaaaa cgctccatgt ataaaaaacg
      301 ttttgctatg cttgaagaaa tcaaaacaaa tttagataaa accttaagta ttcaagacta
      361 attaagtata ttttgatata atctagtctt gctttatgca aaatccttgc tcataaaaat
      421 gggctttaat atccataagg agaaaagatg aaacattatg aggttttatt tatcttaaaa
      481 ccaacactta ctgaagagga agtgaatgcg aagttggaat tcgttaaaga agtcctaacc
      541 aaaaatagtg cagaaattga aactgttgtt ccaatgggta ctagaaaatt agcgtataaa
      601 atcaaaaaat acgaaagagg aacttatttt gtgatttatt tcaaagctcc tacaaacttg
      661 atcgctgagc ttgaaagggt gttaagaatc actgaagaag taataagatt tttaatcgta
      721 aaatatgaaa ataaaaaaga aattgcagct tgggaaaaac taagccacgg gattaagcaa
      781 tctaaaaaag aaattaaacc tttagatgct cctgaaattc aataaggaaa aagatgttta
      841 acaaagttgt tttggttgga aatcttacac gtgatataga aatgcgttat gcacaaagcg
      901 gtagtgctat tggagcttcc gctatagcag taacaagaag atttaccgca aatggagaaa
      961 aaagagaaga aacttgcttt attgatataa gcttttatgg tcgcaccgca gaagttgcaa
     1021 accaatacct tacaaaaggt tcaaaagtac tcatagaagg acgtttgaga tttgaacaat
     1081 ggagtgatca aaatggacaa aatcgctcta aacatagcat tcaagttgaa aatatggaaa
     1141 tgcttggcaa ttccaatgct ccacaacaag gcggaaattt tggcaataat agcttttcaa
     1201 acaacaatta tagtggaaac tatgaaaatc aaagctatga tccttatatg agtgaaaatc
     1261 aaaattttaa taaagcaaaa gcaaaccctg ctccacaaag aaaccaaaac ccacaacacg
     1321 aagaaaaatt aaaagaaatt gatatcgatg cttatgatag cgatgatact aatttaccat
     1381 tttaaaggat aaactatggc agaaaaaaga aaatactctc gcaaatattg caaatacact
     1441 gaagcaaaag ttgaatttat tgattataaa gatacagcaa tgttaaaaca tgctttatct
     1501 gaaagattta aaatcatgcc acgccgttta acaggcacaa gcaaaaaata ccaagaaatg
     1561 gtagaagttg caatcaaacg cgcaagacat gtagccctta tcccttatat agtggataga
     1621 aaagaagtaa tcaataatcc ttttgaagga ctataatctt ttaaagcaaa cttgtaaaaa
     1681 gtttgctttc ttatacattt attctcaaaa taaagttaaa ccaaagtata ttctaaaaca
     1741 tcactgaaag tatcaacagc aatgatttcc atattgtctc taacctcact aggaatatct
     1801 tttaaatctc tttcgtaatt ttttcttgga attaaagctg tttttatatc tgctttataa
     1861 gctgcaatta atttttcttt taatccgcct attggtaaaa cttttccttt taaatctatt
     1921 tcacccgtca ttgcaacatc tgctttaacc tttttatcac taaaaataga agcaatagct
     1981 gtgcttatcg taatacctgc acttgggcca tcttttggag tagctccatc tggcacatgt
     2041 atatgaatat tataactatc ataaacatta actttaggat caataattat ttttttaggt
     2101 atttttattt ttccttcatc gattaaaact tttatcatgc taaaagcaat tctagctgat
     2161 tctttcatta catcacccaa acttcctgtg agcgttaatt ctcctttacc tttaattttt
     2221 acagcctcta cttttaaaac atctccacct acgcttgtcc aagccaaacc attgacctga
     2281 cctacttgat tttctccatt atttttttct atttcaaaaa cttttttatc taaaaattca
     2341 ttcaaatttt ttgtattaat aatgactttt ttaatatttt ctaaaagtag ttttttagca
     2401 ctcttacgac acaactctgc cactttgcga cgcaaatttc taactcctga ttcacgagta
     2461 taatcgctaa tgattagctc tatagtttca tcatcaataa ataattcatt ggattttaag
     2521 ccatgttttt taagctcatc tggaattaaa tattttttca ttatatgaaa tttttcactt
     2581 ggagtataag agctaagttc tataaattcc attctatctc ttaaaggtgc aggaatattg
     2641 ctaatatcat ttgccgttgc tataaaaatg actttactta aatcaatatt aaaatttaaa
     2701 taataatccc taaatttaga attttgctct ggatctaaaa tttctaaaag caccgcactt
     2761 ggatcgcctc taaaactgcg atttaattta tcaatttcat ccaatacaat tacaggatta
     2821 atttgttttg cctctatgag tccttgagta atacgtccag gcatagcgcc tatataagtt
     2881 ctacgatgac cacgcagctc attaacatct tcaagtccac ctaaggctat acgaataagc
     2941 tctcttttta aagcttttga aacagaattt gccagtgaag ttttaccaac accaggaggc
     3001 ccataaagac aaagtataac tttagcacca tctttttctg ctatttttct tttttctaaa
     3061 agttccctaa ctgcaaaata ttcttctatg cgttcttttg gtttatttaa tgcataatga
     3121 tcatggttga gctgttttga aacttcctta atatcaagtt ttttcttaga aattttttca
     3181 aaaggaacat ctaatgctgt ttctatgtaa gtttgaatca tcgatgcttc ggaattatct
     3241 tgatgaatgc gttcgaattt ttcaatttgt tttttgattt ctttataagc gtcttcgtgc
     3301 ataaatttct tctttaactc cagacgcttt tgatactctc taacctcatc ttctttttgc
     3361 gtatcagaac caagctcttt ttgaatttgt cttaattgtt cttttaaaaa atattcttta
     3421 tttaccttat caatacgaga atgtacttta tttttaattt ctttttgaat tttattagct
     3481 tctatttctt gagcaattaa atctattaat tttactaatt tttgctcaag atctgttaaa
     3541 ataaaaaact cataagcaac ttgtttttta atacgcacag tatttaaaat caaatcgcaa
     3601 atcctagatg catcaaaacc ttcttcaatt gttcttaaaa gatctggaga aaaataatga
     3661 ctaatatttg ccaaattttt tactttctct tttaaaactt caagaagtgc ttctttttta
     3721 gttccttcta aaaagtcttc ttttataagt tctatcttgg cttctaaagg tttattagaa
     3781 atttgctcta taattttacc cttggcatat ccttgaaaaa gtattttcac tcttccatca
     3841 ggcaaaggaa cttttcgcat gatagtccca atcactccgc aattataaat ttcatcaaaa
     3901 tttcttccat tttccaactt tgaaggtgca acaaaaagca tgctatcatt tttaatcgca
     3961 agatctaaag ctttcatatt ggatgaatcg ttaataaaaa taggagttat cataaaagga
     4021 tataaaaata attcatcttc aaccaatact ggtaaatttg ctggataatt ttgtatctct
     4081 tcaatctgca tttattttcc ttgtttatta aaatctttca aatatacttc tataccaagg
     4141 aagctcaggt ttgataatac tttgctgata aaattcactt tcttgaagtc tttgtttata
     4201 aatttgtgca ctttcatcat gccctatgcg ctggtataga ttttctatag tactattaag
     4261 ataaaaaacc gctaaattaa attttgtaag cattgtttga accaaaggtt catattctgt
     4321 ataaggataa tctttcaaaa aagtatctat ttctttttgg ctttcaagca ttaaagcctg
     4381 attacgattt ggcactgcaa atgcatcaaa ttttgcctta attttaagat aacgaatata
     4441 atcagcattg cgtgaatttc caaatttttt attatattca tctaaataaa attcagctaa
     4501 cttatattcc tcttcatcca tatgagcttg tgctaaaata attaaaatag tttccaataa
     4561 aggatcggca acatgctcac ttgccatacc attataatga tcatcagctt tttccaaatc
     4621 cttgtcctgc aaatctttaa taatttgctt ataccactca ctagcactaa gattgtataa
     4681 accttcatca tttttcgtac tacacgcact aaaaaaaaca cttaaaaaaa ccaataaaaa
     4741 aatacctttt ttcatacttc accttgattt atattctcaa aaatatatat tttaacgatt
     4801 ttataattat gttcttctaa aattataata aaattaatta aataatttaa aattttggaa
     4861 tgattattgc ttattttatg ttaaaatatt aaacattata acttgaggag aaaacatgac
     4921 cctagctgtt aaatgcccta tcttaggttt tgaagaaacc aaaaatatgg aattttcaac
     4981 tatcgatgaa gtatttgtaa gacttaaaag tcttgatggt aaagactttt cttttgtttt
     5041 aattaatcct tatttgatta gacctgatta tgaatttgat ataccaactt attatcaaga
     5101 gcttctttct ttaacacctg aatctaatat gaaaattttt aatatagtag ccatagcaaa
     5161 aagcattgaa gaatcgacag tgaattttct agctccagta gtcattaatc ttgataataa
     5221 tactatggta caagtgatac tagatacagt taattatccc gacttttttc aagctgatca
     5281 aattgctaat tatattaaaa aataatgctc tatatacttg caaatggatc tatggcaaca
     5341 gccttagcct atgggttaaa agatgattat gaaatttgta tagtaggaag aagtatagaa
     5401 aaacttcaag ccctcgccaa agaaggcttt aaaaccttac tttacaaaga ttttaacata
     5461 gaaggtaaag atgttatttt agcatttaaa ccttatgctt tagaaaatat tgctcaaatg
     5521 ctaaaaggac aagcacgtat cttaatctct gttttagcca atgttgattt tgaaaaacta
     5581 caaaccatca aagctcaaaa ttatgttaga ataataccca atacagcagc taaatacaag
     5641 gcttcaacca caccatatat acttaaaaac tctcattttg aaaatgaaat tttagacatt
     5701 ttaaaaactt ttggctcggc ttataaatta gataatgaaa tacaaatgaa tgcagctatg
     5761 gcgattagcg gctgcgctcc tgctttttta gcacttatag cagaaagcat tgctaatgct
     5821 ggagtttatg aaggtttgtc aaaagaactt agtctcaatc ttacgcgctc tttatttaaa
     5881 agctctagtg ctttactaga acatgagcat ccagctatta tcaaagaaaa tatttgctcc
     5941 cctggaggag ttacaataaa aggcataaaa atactcgaac aaaaaggaat tcgcggaagt
     6001 ttttttgaag ccataaatgc tagcagcgct aaatgaaaaa ggctttcata cttatagaaa
     6061 gcattagtgc tataacgatc atatctttaa ttttcattgg cattttttat tactatattc
     6121 aactttacaa aaactatgaa aatttaaata tttttaaaag actctataaa cttcaagaag
     6181 aattatatga aaagcctatt tttaaaacca tcatacttca aacttcagcc ttaaaaccta
     6241 tagttttaca agaacagttt gttaatgatg gtatatttca atttcaaaaa ttatactttc
     6301 aagatcaaaa ttatagcgtt tattttaaag aatgagcaaa gcttttacac tttttgaact
     6361 tataatatca ctaatacttt ttacttttat aactagctta ctttcaaaac ctttaatgga
     6421 tttttatcat ttaaatttta ctgctttaca tacaaacaat cttatcactc aagcacattt
     6481 aaacttgctt aaaatagaaa aattaataca aaattgtatt aatattacat tttcacaaaa
     6541 tacattaaaa tgtcttttaa aagatgagtt aattagccta aaagataata aactttatct
     6601 tattaattct gctcttattt tagaaaataa tcatacactt tattcacctc attctgattt
     6661 taaaacacaa ctccaaaata gaaaagattt atataacgac aatgaacata ttagctatgc
     6721 ttataaaatt aataagattg aaaaaata
//
LOCUS       DAQSLY010000085         6724 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.085, whole genome shotgun sequence.
ACCESSION   DAQSLY010000085 DAQSLY010000000
VERSION     DAQSLY010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6724
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.085"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..794)
                     /locus_tag="R2H98_001342"
     CDS             complement(<1..794)
                     /locus_tag="R2H98_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEE9024213.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKNSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWLNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQNQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLK"
     gene            767..1039
                     /gene="yajC"
                     /locus_tag="R2H98_001343"
     CDS             767..1039
                     /gene="yajC"
                     /locus_tag="R2H98_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEE9024214.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            1032..2612
                     /gene="secD"
                     /locus_tag="R2H98_001344"
     CDS             1032..2612
                     /gene="secD"
                     /locus_tag="R2H98_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEE9024215.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            2612..3583
                     /gene="secF"
                     /locus_tag="R2H98_001345"
     CDS             2612..3583
                     /gene="secF"
                     /locus_tag="R2H98_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEE9024216.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            3593..6022
                     /locus_tag="R2H98_001346"
     CDS             3593..6022
                     /locus_tag="R2H98_001346"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEE9024217.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKVLRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            6019..6531
                     /locus_tag="R2H98_001347"
     CDS             6019..6531
                     /locus_tag="R2H98_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024218.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            6515..>6724
                     /locus_tag="R2H98_001348"
     CDS             6515..>6724
                     /locus_tag="R2H98_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024219.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIR"
BASE COUNT         2433 a          792 c         1263 g         2236 t
ORIGIN      
        1 ttttttaaat caaaagcaaa agcggtttca ggcaagatta caagttcttt tttttcattt
       61 atagcttgaa gtatatcttg aattaagata tcagaatttg attttaaatt ttcttgtaaa
      121 aatttttgat tttgagagat attagtattg atgagtttgt agtttaaatt aagagtttga
      181 gcttgttttt cattatattg aaatccacta aagaataaaa taagaacaat cgctatttta
      241 taatatcttg atatataacc ctcatagatg aaatatgcta ttaaaaatat gcaaataata
      301 ccacgataac ttgggtcaaa aaaaccataa actgtaaaaa ttccccaatt aagccaatca
      361 aatcctaaag gatggataaa acttatgcaa aaaattccac aaagccttaa aaaatcaaat
      421 tttaataaat aacataatct aaaaagtagt ccataaataa aaccaatgat aattggtata
      481 attggtacta aatagtttag attaaaataa attgaagata aaccaatcca ccaaaaccaa
      541 agaatcccta caaaaaaacc tatccaaaaa tattgtttag aatttttact ttttagaagt
      601 aaaactaacc cccaaatagc taaaaatggg ctaatagttt gtgtaaaaat attttcaaaa
      661 aatgatagat aaatagaatt tgaaagtaaa attgcaataa aaaagacttt tattatttta
      721 aaaatgatag aattagtgtt taattttttt ggaataaagg aaaaatatgg cagaaaattc
      781 aattttaact tcattgttac ctcttgtagt gttatttgca attttttatt tcttggtgat
      841 cagaccgcaa caaaaacaag caaaagcaca taaacaaatg cttgagtctt tgcaaaaagg
      901 agataaaatc atcactaatg gcggacttat ttgtgaagtc gtaaaaccag aggaggattt
      961 tatcaaagtt aagcttaatg aagacaatgt tactgcaaaa atttcaagag aatttatagc
     1021 aaagaaaatt gatgcgtaat tctaaaatca attatcgctt gattattttt atagcggtat
     1081 ttatttttgg agtggctttt tcactccctt cttttttaca gtcagaacgt ggtgcgaaga
     1141 ttaatttagg gcttgatttg caaggtgggc tttatatgct cttaggtgta gataatgaag
     1201 aagctgtaaa atctaaaata aaatcaattg catcttcatt gagttattct tttaataaag
     1261 aaaatatttt aaatgatggc ttaaataccc atgatgatat tttagaattt actttgcttg
     1321 ataatgcaga tattgcaaaa gttgaaaatt tgcttaaaga aataaaagga attaatatac
     1381 aaagtgaaaa tatgcactat aaaatttctt ttacctcaga agaagtaaaa aatatagaaa
     1441 attttgcact tttgcaagca gttgaaacca taagaaatag gcttgatcaa tttggtttag
     1501 cagagccaac agttgctaaa caaggtgatg ataagatttt ggttgaactt gcagggatta
     1561 aaaccaaaga agatgaacta agagcaaaag aacgcatcac aaaagcagca catttgcaac
     1621 ttatggaagt tgatgattct aaaatgggtc aagcttctac aatgagcgat gctgaggctg
     1681 cgagttatgg actgatttta gtgcctgatt ctagaaatcc aaatttaaaa tataccttaa
     1741 aaagtatacc tattttagat ggatctatgc ttactgatgc tagagtaggg attagtgata
     1801 agagtaatta tcctgtgatt aattttactt taaatgccga gggttctaaa aaatttgctg
     1861 attatacagg agcaaatgtt ggaaagcgtc ttgctattgt acttgataat aaagtatatt
     1921 ctgctccatc tatcaatgaa cgcataggcg gaggtagtgg gcaaatcagt ggagctttta
     1981 ctcaagaaga agcacgcgat gtggcggtag ctttaagaag tggagctttg cttgcgcctg
     2041 taaaattact tgaacaaaga agcataggac catctttagg tgctgatagt attaaaatga
     2101 gtatgatagc cttaatcggt gcatcggttt ttattgtagt atttatgatg atgtattacg
     2161 gtgtggcagg aatttttgca aatattgcaa tgctagttaa tgttttggta gtagttgccg
     2221 ttatggctat gtttggagca actttaactt taccagggat ggcaggactt gttttaactg
     2281 tgggtatggc agtagatgca aatgtgatta tcaatgagcg tatacgagaa ctcttgcgag
     2341 atggagtaaa tataagagtt agtatagaac aaggttataa aaatgctatg agtgcgatta
     2401 tagattcaaa tatcacttct ttagttactt cggtagcact ttatgcctat ggaacaggag
     2461 cagttaaagg ttttgctgtg actttgggaa ttggtatcgt tgtttctatg attacagcta
     2521 ttttaggaac tcacggaatg tttgattatt ttatgcaacg catagaaaaa aataataata
     2581 caagattttg gtttggctat aggagaagat aatgcagttt tttagcgaaa agaaaattta
     2641 tgattttatg agaatgcgtt ttgctgctat ttctctttct tttattttgt tttttggttc
     2701 tatttattta ctttgggata ggggtttgca atatggcatt gattttagcg gaggaacttt
     2761 agttcagctt aaatatgaaa atgcagctcc tataacacaa attcgagaaa ttttagaaaa
     2821 acaaggaact tttcaaaatt tatctgtaac tgaatttgga agtaatgaag aagtaaccat
     2881 acgcttttta ggaagtaatg ataatgtaag caatgatata ggcgagcata taagcactct
     2941 tttaaaggat acgggaaaat ttgaagtgcg tcgtgctgat gtggtaggtc caaaagtagg
     3001 tgatgaactt agaaataaag gacttatggc tatagctgta tctttgatag caattttaat
     3061 ttatatagcg ttgcgttttg agtggcgttt tgctcttgcg gctataatca gtgaaattca
     3121 tgatgttgtg attactttag gggcaatttc tttatttaaa attgatgtca atttagatac
     3181 tttggctgct gttttaactg tgcttggata ctctttgaat gatacaatta ttatttttga
     3241 tagaatcaga gaaggtatta aaacaagtaa aaaaaccgaa cttgcaccta ttattaatga
     3301 aagtgtttca gcaactttat caagaacggt tttaacttca gggttgactt tagcaaccgt
     3361 tgtgatactt tatttctttg gtggggaaat gatacaagga ttttctttgg ctttaattgt
     3421 aggtattata gcgggaactt taagctctat ctttgttgca agtccgacat tattatggtt
     3481 taaatttagt gtgcttgagt ttaggaataa agaaattgaa aaagcaaaaa gaaaacaaga
     3541 taaagaacgc aatcgtgcaa tgtatgaaaa aggaacagtg taaggagaat ttatggctta
     3601 tgaagcaagt ttaatagaaa aaaaatggca aaaaatttgg gatgaaaatg aatattttga
     3661 gccaaaagat gatttaaatt tgcctaaaaa atatatttta tcgatgttcc cttatcctag
     3721 cggacgaatt cacatggggc atgtaagaaa ttatactata ggtgatgctt tggcaagata
     3781 ttatcgcaag ataggtttta atgttttaca tcctataggt tttgatagtt ttggtatgcc
     3841 tgctgaaaat gcagctatta aacataaaat tcatcctaag tcatggactt atgaaaatat
     3901 agcttatatg aaaaaagaac ttttttcttt aggtttttct ttttctaaaa aaagaatgct
     3961 tgctacttca gatccacttt atacaaaatt tgagcaagaa ttttttatta agatgtttga
     4021 aaaaggtttg atttacacta aagaagcaaa tgtaaattgg tgtgaacaag atcaaacggt
     4081 tttggctaat gagcaagttg aagacggaaa atgttggcgt tgtggtcatg aagtagtgca
     4141 gaaaaaaatg ccaggttatt atgtaaaaat cactgcttat gctgaggaac ttttaaaaga
     4201 tttagaagaa ttaaaagata aatggcctaa tcaagtttta actatgcaag aaaattggat
     4261 tggtaaaagc gaaggtttgg aattttcttt aaatttagac gaagaaagca agcaaaaaac
     4321 caaagaaagt tctttagaag tttttactac aagagcagat acaatttatg gagtttcgta
     4381 tatcgcttta gctccagaac ataagattgt tcaaaatttg ctttcacaaa atttattaaa
     4441 tcaagatgta ttaaataaaa tcaaagttat tcaaaatcaa agcccaagag aaagacaaag
     4501 ttctgaaaaa gaaggttatt ttttaggaat ttatgccatt catcctttaa gcggagaaaa
     4561 aattccttta tgggtggcta attttgtctt ggctgattat ggtagcggag cggttatggc
     4621 tgttccagct catgatgaaa gagattttga atttgcaaca aaatataatc ttgctatcaa
     4681 acaagttatt caaactcaag aaaatttacc ttatacgcaa aaatcaggaa agttaatcca
     4741 tagtcaagaa tttgataatc ttgattgtaa tgaggcaaga ttaaaaatta tttctcagtt
     4801 tgaagctaaa aatataggaa aaagggttgt aaattttaaa attcgtgatt ggggtgtttc
     4861 acgccaaaga tattggggtg cgcctattcc tatgattaaa tgtcaaattt gtggtatagt
     4921 gcctcaaaaa ctagaaaatt tacctattac cctacctgaa gatgtgcaaa ttacaggtga
     4981 gggtaatcca cttgataaac atccaacttg gaaaaattgt atttgtccca aatgtggcaa
     5041 agaggctcaa aaagaaagtg atactttaga tacttttttt gaaagttctt ggtattttgc
     5101 acgttttgca agtgatgaga aaacttggca ggaaaaagct ttagatgaaa aaagtgtaaa
     5161 gtattggatg agtgtggatc aatatatagg tggtattgaa catgcaatct tgcatttgct
     5221 ttatgcgaga tttttccaaa aagttttaag agacttgggt tatttaacac aaaatgaacc
     5281 ttttgataga cttttaactc agggtatggt gttaaaagat ggagctaaaa tgtcaaaatc
     5341 aaaaggcaat gttgtagatc ctgatgagat tatagaaaaa tacggtgctg ataccgcaag
     5401 actttttata ctttttgctg cgcctccggc taaagagctt gaatggaatg atgatgcggt
     5461 tgaaggggct tatagattta tttgtaaact ctatgatagg gcgcaaaatg ttaaaaaagg
     5521 tgagcttgta gaattaaaac aagaaaattt aaataaagaa gaaaaatatg caagattaaa
     5581 ggtatatgaa gctttgaaaa aatcttttga agtttatcat caaagttttg cttttaatac
     5641 tttaattgca gcttgcatgg aagctttaaa tgctttagcg ctttgtaaaa atgaagcttt
     5701 ggagcaagag gctttttata ttattttaaa tattttagag cctattattc ctcatgtttg
     5761 ttttgagctt agcgaggagc tttttaaatg taaaaatttc aaaaaattag aacttaagga
     5821 agaggttttt gtaaaagata ctttaaattt agctgtaagt attaatggta aaaaaagggc
     5881 tgaatttgaa atttcaagta gtgcgagtaa agaagaaatt ttagcttttg caaaagaaaa
     5941 tactgctaaa tggcttgaag gtaagagtat agttaaagaa atttatgtgg aaggaaagct
     6001 agttaatcta gtgattaaat gaaaaagatt ttaatttttt gtataggttt atttttaggt
     6061 gcttgtggat atgttcctac atcaaaaatc gctaataata ttttcgatga gaaggtttat
     6121 gttaatgttg aattaagtca acaagatcca aaaaatagta tctatgttgc cgatacttta
     6181 aaagaaatgg taatttcaaa attagggcgt aaacttgctt taaaacatga agctgatgat
     6241 gtaatcaatg ttaaaatgaa taatttagaa tttattcctt tagcttatga taaaaatggc
     6301 tatgttatta gttataaagc taaattaaat ttagatttta atgttgtctt taaagatggt
     6361 tcaagtcagg cttttagtac aagtggaagt tataattttg aaatttctcc aaatagtatt
     6421 attagtgatt ctgcaaggta tgaggctatt cgagcagctt caagcgaggc atttgatgag
     6481 tttatttccg taattgctat taaagggcaa aaacgtgatt ccaaatacta atgaaatagc
     6541 aaagcaaact ttaattgcat taaaagaaag aaaactaaaa ccaactcctg aaaattatac
     6601 ggaaattttt gaagaattat ctttaaaata tggtattaca agttcaaata aggctaaact
     6661 tgataaatac aaaaccttgc ttttaccgat ttatcaacaa gaattaaatt ctaaaactat
     6721 aaga
//
LOCUS       DAQSLY010000086         6708 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.086, whole genome shotgun sequence.
ACCESSION   DAQSLY010000086 DAQSLY010000000
VERSION     DAQSLY010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6708
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.086"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(46..1053)
                     /gene="ruvB"
                     /locus_tag="R2H98_001349"
     CDS             complement(46..1053)
                     /gene="ruvB"
                     /locus_tag="R2H98_001349"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEE9024220.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            1144..1554
                     /locus_tag="R2H98_001350"
     CDS             1144..1554
                     /locus_tag="R2H98_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEE9024221.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            1555..1913
                     /gene="ssrA"
                     /locus_tag="R2H98_001351"
     tmRNA           1555..1913
                     /gene="ssrA"
                     /locus_tag="R2H98_001351"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            2142..4390
                     /locus_tag="R2H98_001352"
                     /pseudo
     CDS             2142..4390
                     /locus_tag="R2H98_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(4533..6617)
                     /locus_tag="R2H98_001353"
     CDS             complement(4533..6617)
                     /locus_tag="R2H98_001353"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEE9024222.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
BASE COUNT         2230 a         1011 c         1142 g         2325 t
ORIGIN      
        1 aactaaaata aagcttataa gaaagaattt tccattttgc aaaatttact cctcaaataa
       61 agttttttca tagtttagtt ttaaagcact ataacttttt gcacttgcta tacgcccttt
      121 tgcagtgcgt tctatatagc cattagctag taaataaggc tcgattacat cttctatggt
      181 attttcatct tcacttaaag ccgcagcaat gcttgcaagt ccgataggtt tttgtttagc
      241 agcagttaaa agttcaagat atcttaaatc catcgcatca aaaccaagct cattcactcc
      301 taaagaattt aaggcctcat tagccctttt ttctgtgata atctcttcat cattaacatc
      361 agcaaaatct cttacccttt ttaaaagcct tagagctatt ctaggggttg aacgacttct
      421 tttagcgatc tcaagtgcgg ctttttcttc gcaagtttta ttaagtttta aagctgcttt
      481 ttgcaagatg agagcaagtt cgctatcttt gtaaaattct aatctaaatt gcataccaaa
      541 acgatctcgc aaaggattac taagcatacc tgcacgcgtt gtagctccta taagagtaaa
      601 ttttggtaaa tcgattttta tggtttgagc agctggacca ctacctatga taatatcaag
      661 gcggtaatcc tccattgcag ggtaaagcac ttcttcgata gcagggctta agcgatgaat
      721 ttcatcaata aaaagtatat ccccttcgct aagattggtt aaaatagcgg ctaaatcccc
      781 gcttttttct atcataggag cggcggttgt tttgatattt gcacccattt cataggagat
      841 gatattagct agtgttgttt ttccaagtcc tgcaggacca ctaaaaagta tatgatctaa
      901 acattcattg cgttttttgg ctgcagctat aaagatattt aaattttttt taatgctttc
      961 ttgacctata taaccatcaa aatttgaagg acgcaatgaa gtttcataag tttcatcaaa
     1021 ggagtatttt tctatttcta ctattctatc catatctttg cttatatttt ggaaaaatta
     1081 aaataagatt ttagctaaaa tttgctagaa tttacattaa actttaatga ttatggttta
     1141 aaaatgggaa ttttaacaaa attagaatta gattatgaaa ttgacgatat agaaaaattt
     1201 ttacaatttt ttagaaccat gtgcgatagg tttgaacctt taatcatcaa gcttggaagc
     1261 gatagcgtgc gttataaaga agccataaaa gagcttgaaa ctttagcaca caataccgct
     1321 tgggcagcaa gacgcttaaa tcttgaagaa gtgactgatt tttgtgtatt ttgtgaagag
     1381 atgatggcgc aagcaaatcg ctttaacggg cctgctagtg atgaatttac ggattggatg
     1441 cttttgatga gtgatcagtt tgaaaaatat tgtcgttcat atgaaaatga tgattctgtt
     1501 ttagcggttt ttaatccttt aattgttaat gttccaaata ttatttctaa ataagggagc
     1561 gacttggctt cgacaggagt aagtctgctt agatggcatg tcgctttggg caaagcgtaa
     1621 aaagcccaaa taaaattaaa cgcaaacaac gttaaattcg ctcctgctta cgctaaagct
     1681 gcgtaagttc agttgagcct gaaatttaag tcatactatc tagcttaatt ttcggtcatt
     1741 tttgatagtg tagccttgcg tttgacaagc gttgaggtga aataaggtct tagccttgct
     1801 tttgagtttt ggaagatgag cgaagtaggg tgaagtagtc atctttgcta agcatgtaga
     1861 ggtctttgtg ggattatttt tggacagggg ttcgattccc ctcgcttcca ccatcacgct
     1921 aattttaagt aaatcataag tttatttcaa atttttagaa ttttttatat gaagttaaga
     1981 acgatttatt acccttaaaa ctttgatata ttaggtttta taatttttca ttaaaaattt
     2041 atagttttat ttttaagctt gtttttaggg ggggtataat tattccttca gtttaaattt
     2101 attgaaggag aaacttatga aaaaaaaatg cttcaagcaa gatattgcta agcttaggtg
     2161 tagcaacttt gctttattcg agtgcttttg cgcaagaaat caatcttaca gggtcttcag
     2221 atataggaaa atattttgaa gaaaatggta aggatatcaa tcttaaaaat cctgatgatt
     2281 acaaagggca agatttaagt atcacaatag gtgtttggga tttaccaaac gatgattatg
     2341 atagcgctga ttgtcgattt aacattgata tcggtaaaga caatacttta agctttacac
     2401 ataacaataa aaaaatcctg cttatgtaac aaatctaaac gctactgcta aagaggttaa
     2461 aacaacagat atagttttac aagcttttgc accttcggtg attaatggaa atttaactat
     2521 gactagctca ggaggtgaag ccattactga ggatgaaaaa aaggttcagg tataattctt
     2581 tataatggag tagttgaaga aaaaagtgct aatggtagct taactataaa tggaaatttt
     2641 actgccgata aaaccctttt ttgctactta tggaaatttt gttaaggtaa atggaactgc
     2701 aaatcttaaa aattcaaatt ttggacttat gaagcgctct tatacagact tagaagcaaa
     2761 taatgtagta atagttcaag ctaaagattt caatgaaaac attttaaaag caaataataa
     2821 cgcaggtgca ttacttttaa aattcgcaag tgattatatc tcaaccgatg ttcaaggcaa
     2881 agatcctttg gaagcaggaa ctataataga tattagtgat gaagataaat acggcgatgg
     2941 agaaaaaggc ttagtagatt ataaacttag cgttcaaaac tgcggtggca ataaatgctt
     3001 agtgatcaat ggaggtgcta ctgcagcggc taaagataag ctagttcaac ttcaagtaga
     3061 tatagatact atcgataaat tgcttaaaaa tgaatttgat tccgatcaag atgaagaatg
     3121 ggcaaaagcc aaagaagccc ttgaaaaaca aaaaactgaa cttcaaacaa tgttagaaga
     3181 agctgagaaa aacggcggta aaatcgatga tgaaaaatac attgatttag taaataaaaa
     3241 ttcaaattga aatcttaact ctaatgataa agcttctatc ctagcacttc gttctatcac
     3301 agaacaatta ggaagtatag gagcagattt agcaagtaga gaaggtgtaa aactagcttt
     3361 agatatcaaa aaagatacag acaatacagg taaatctgta tctaatctaa attcagcttc
     3421 tagtgcagta aataccacta tgaatatttc taatgatgtt tctataggtt ctcgtgtagc
     3481 aatgctaaac aatccttttg gaacttatgc ttctaaaatg aatggtctta aatttgctgc
     3541 tttagatagc gatatgagac caagctatgt aaatgaatat accaatagtg tttgggctaa
     3601 tgcttttggt ggtgctaaca ttatcgatgg agatagtggt gcaatgtatg gtgctaccgt
     3661 gggagtagat aaacaagcta atgataatgt tttatggggt gcttatttta cttatgcaaa
     3721 tgctaaaatc aaagacaata atttagaaca aaaaagcgat aacttccaat taggtatgta
     3781 ttctactatc aatatagctc cacaatggga acttaatctt aaagcttatg ctcaagtttc
     3841 tccaactaaa caagacaatg ttcaaataga tggtgcatat aactcagatt atacaagcaa
     3901 attcttagga cttagtgcta atgcaggtcg tgtgtttgac tttagtgata atactttatt
     3961 tattaaacct tttgcgggag taaattatta ttttagttat actccatctc atacagaaaa
     4021 tggtgctatt gctaaagata ttgattctat gaaaaacaat tctgtaagtg ttgaagtggg
     4081 tgctgaattt agaaaatata tgaatgaaaa ctcttatatt tttgtaactc caaaaataga
     4141 acaatttgtt atcaatagtg gtgatgatta cacagctaac ctagctgtaa ataatgcttt
     4201 ctttactagt attgaagcta acaacaagaa aaaaacatac ggacaaatta tcgtaggggg
     4261 taatgtagat tttacaaatc aactcagtat gaatcttggc tttggtgcta aacaaatact
     4321 agcaggtaaa gtagataata aaaatgaaac ttacttaagt ggtcaagtag gacttaagta
     4381 taaattttaa tcttaaaaat catttctaaa tctttttata gtttagaaat gattgtttat
     4441 ttctatggga aatctcctag ggctttatct taaagccctt ttttataaca aacaagtaaa
     4501 taagtcttta gagtaaaaaa ccctaaaaac ttttagtttt ctttgaaaag tttggaagct
     4561 aagtgcgttg cacgactttg atctgtatct tttttaagtg ttttataaat tttacttaca
     4621 tattcttcta aggtttgttg agaatctatg attttttcag aagaaggaat tttttcatat
     4681 tctccattat ttttaagctt ataagctaaa acattatcac taagttgcaa gcgtaaaaat
     4741 tgagctaatt tagctttgct tctttcatca tatataggag tcataagttc taaacggcgt
     4801 tctaaatttc ttggcatcca atctgcactc gatataaaat aatttggctc actatgttta
     4861 aaataaaata ctctagcatg ttctaagtat tttcctatga tgcttctaac gcgtatgttt
     4921 ttgctgtatt cttcatcagg ttttaagcaa caaattccgc gtatgataag atcgatttgc
     4981 actccttcca tacttgcttc ataaagcgct tgtatgatat cactatccac aagagaattc
     5041 attttagcta caatcacacc ttcatttttc ttgcttgttt caatgcgtat catttctaaa
     5101 actttttctt tgatttgatt tgggctcatt gaaagagttt gaaggcgacg atttttacta
     5161 aagcccgata agatgtggaa aaagcttgtc gtatctcttg caaattctgc tttgcttgta
     5221 aaataactca catcagtata gattttagca ctgcttgcat tataatttcc cgtacttaaa
     5281 tgcatataaa atttaagttt atctccttgt ttgcgtatga cttgagaaac cttagcgtgg
     5341 actttaaaac ctgtaatgcc ataaataaca tgagctccgg cattttctaa agctttcgcc
     5401 caatgaagat tattttcttc atcaaagcgt gcttttaatt ctaccatcac agttacttgt
     5461 tttccatcac ttgcagcatc aattaaagct tgaactatat tggaattttt ttcaactcta
     5521 taaagtgtca ttcttatgga aattacttca ggatctttgc ttgcttcttt gataaattta
     5581 taaactggat caaaactttc aaaaggttgt atgatgagta tatcttcttt ttctacagcg
     5641 tcaaaaatag ataaattttc atcaaaaggt ggtaaagttt taggcgtgta aagtgggctt
     5701 aaaagatgcg taaaggtttt atttcctgcg atttgccaaa ggctagggag attgagtaaa
     5761 atagaatatt cataaacatc tttatgaaaa attttcatgt gagtattaag aaattctacg
     5821 atttgctcat ctgcatcttt ttgaatttgc aatcttacaa aagctccttt tctgcgaagt
     5881 tttaagcctt gttctaaaat catcataaaa tcatcagctt cttcctcttc tattaccata
     5941 tctgcatttc tagtcactct aaatgctgct gaagctaaga gtttatagcc tggaaaaatt
     6001 tcttctgcgt gttgatggac tatactttct ataggaacat aaatatttgc acttacttca
     6061 taaaaacgag gtaaaactct tggaattcta atcattccaa attttacaag ttcaggatgt
     6121 gctttatcgc aaattttaac cgctagtgaa aaagataagt tgtttaaatg cggaaaaggg
     6181 tgagtagcat caacagctat tggaacaata acaggaaaaa tattggagaa aaaatactca
     6241 tcacattttt gttttaaatt ttcatctaaa ttctcataat gttttatgaa aagattttct
     6301 ttttctaatt cacttgtgat ttcattaaaa taacgctcca aaagctcttt ttcttggtgt
     6361 aagtatttgc gtatggcttt taattgttgc aacggtgtca tttcatcgct actgcttgca
     6421 ttaactccag ctgaaaaaag ttgttttaag cctgcgacgc gtatcatata aaattcatct
     6481 aaattagtgc aatatatagc tataaatttt aatttttcta acaagggtaa atttttagaa
     6541 cattggtcta aaacacgaga attaaagcga agccaagaaa gttcgcgatt gataaacata
     6601 tcaggacttg tttgcattaa tttttccttt tttagttgta ttttatcatt tattttgaaa
     6661 ttattgaata aaagttttaa attttttagg ttaattaaga gtaaatat
//
LOCUS       DAQSLY010000087         6574 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.087, whole genome shotgun sequence.
ACCESSION   DAQSLY010000087 DAQSLY010000000
VERSION     DAQSLY010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6574
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.087"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            116..901
                     /locus_tag="R2H98_001354"
     CDS             116..901
                     /locus_tag="R2H98_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEE9024223.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            974..3799
                     /gene="uvrA"
                     /locus_tag="R2H98_001355"
     CDS             974..3799
                     /gene="uvrA"
                     /locus_tag="R2H98_001355"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEE9024224.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSVSDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3804..4247
                     /locus_tag="R2H98_001356"
     CDS             3804..4247
                     /locus_tag="R2H98_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEE9024225.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFTPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4203..5210)
                     /locus_tag="R2H98_001357"
     CDS             complement(4203..5210)
                     /locus_tag="R2H98_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEE9024226.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGIKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(5207..6554)
                     /locus_tag="R2H98_001358"
                     /pseudo
     CDS             complement(5207..6554)
                     /locus_tag="R2H98_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
BASE COUNT         2305 a         1125 c         1056 g         2088 t
ORIGIN      
        1 atgcttaaag ttaccaaaaa atattctatt gttataaaaa aactaagata atacttagct
       61 taataagata aaattattcc gtatttgaaa tatttaatat tttttaggaa aagctatgga
      121 aatcacagat ttaccttatc taatcatagg aatcatttca ggtattgctt ctggactttt
      181 tggcattggt ggaggtatga ttatcgttcc ttctatgttc gcacttggag caagtgctca
      241 ccatgctatc ggaatttcag tattgcaaat gatttttgca gcagtttttg gctcttatat
      301 taattataag aaaaaaaatc taaatcttaa agatggtatt atgataggtt ttggagggct
      361 cataggagca agctttagcg gaatgctttt aaaagcttta agtgatgtag ctcttactag
      421 cgtatttttg gcggtaagtt gtatattttt tatcaaatat gcttttggaa ttaaagaaaa
      481 cattgtgcaa aatcaaagaa gcgtttgggt aaagaatgtc attttattta ttgctggagc
      541 ttttactggt atttttgcta tttctttggg aattggtggc ggacttttaa ttgctccgat
      601 tttagcttat tttttaggct atgatagtaa aaaagttgtt tccttatcct tgttttttgt
      661 tatttttgct tcagtctctg gtattatatc tttttcaaat tctggagtta tagactctga
      721 agttattcat aaaggaatac tagtaggtat agcttctatg gttggagttt ttataggaat
      781 taaaatcata gaaaaaatgc atatttcagc tcatagaaaa attttacttt gcgtatatgc
      841 cttatcaata cttggaacca cccactcttt gcttaataag ctaaatttta taaattttta
      901 acttggattt atccaagttc ttttaatatt attatgctaa aatcttaaat ttatttaatg
      961 tttaggaaag actatgaacg ataccataaa aatcattggc gcaagagaaa ataacctaaa
     1021 aaatatccac cttgaaattc ccaaaaacaa actcattgtt tttacaggac tgagcggaag
     1081 tggaaaatca acccttgctt ttggaactct ttatgctgaa ggacaacgcc gttatataga
     1141 aagtttaagt gcttacgcca gacaattttt agataaggta ggcaaacctg atgtcgataa
     1201 aatcgaaggt ttaactccag ccattgccat agatcaaaaa actacttcta aaaatccacg
     1261 ctctactgta ggaaccatca ctgaaattta tgattatcta agacttttat acgcaagagt
     1321 tggcattcaa cattgtcatc aatgtggaca aaaaatttca tctatgagtg taagtgatat
     1381 agtcagtgaa attttaaaat ttccaaaagg tgcaaaaatc atcatctacg ccccactcat
     1441 acgagaaaaa aaaggaactt atgcagattt gcttgaaaat ttacgcaaca aaggctatgt
     1501 aagagctcaa attgatggag ttttggtaag acttgatgaa gaaattgaac tagccaaaac
     1561 caaaaaacac accattaaac ttgtcataga taggcttgaa attcaagaag atttactttc
     1621 tcgtcttgca agcgatatag aaaaaggctt acaagaaagc tttggagaaa tagaaataga
     1681 agttttaaat catgaggaaa taaaccttaa taaacactat cattttagcg agcattcagc
     1741 ttgttttgat tgtaaaattt cctttgttcc actcgagcct ttaagctttt cttttaattc
     1801 tccaaaagga gcatgtgaag cttgcgatgg acttggaatt cgttatactt tagatatgaa
     1861 aaaaatcatc gatgaaaatt taagtctcga aaacggtgct gttaaaatca tgtatggttt
     1921 taataaaagt tattattata aattcctaat cgccttttgc gagcaaaatg aaattcctat
     1981 caaaatacct tttatgcaat taaacgaaga acaaaaacgt cttgtattgt atggtaatgc
     2041 caaaactata gaatttcttt ggaaaagaaa tcgcctaaaa cgcacttttg aaggcgtggt
     2101 taaaatggct tatgaaatgc taaaagatga aaaagattta gctgaatata tgagtgaaaa
     2161 aatttgtaaa gactgcggtg ggcatcgttt aaaacccgaa agtttagccg tgaaagtagc
     2221 caaaaaaagc ttgggtgaaa ttttagatat gagcatagaa gatagtacgg ctttttttgc
     2281 agatgagaaa aatttttctt atttaagcga gcaacaaaaa cttatttcta aacctatcct
     2341 aaaagaaatc aacgaaagat tgtttttctt gtatgatgtg gggctaggtt atctttcttt
     2401 agggcgcgat gcaagaacga ttagtggggg tgaagcacaa agaatccgca tagcttcaca
     2461 aattggcagt ggtttaagcg gagtgatgta tgttttagat gagcctagca taggacttca
     2521 tgaaagagat actgcaaaac tgattaaaac tttaagaaat ttacaacaaa agggcaatac
     2581 cctaattgtc gtagagcatg ataaaatgac catagaagaa gcagatttta ttgtagatat
     2641 tggtccaaaa gcaggaaaat ttgggggtga ggttgtattt agtggaactt ataaagaact
     2701 tttaaaaagc aaaagcgaaa ctgcacttta tatgaatggt aaaaaacaaa tttcacaact
     2761 tcaaaacaga acacagaaag aatggcttga gcttaaaaat gtaaatatta acaatatcca
     2821 agatttaagc gtaaaatttc ctttgcaaaa tttagtcgct ataacaggag tttcaggttc
     2881 tggaaaaagc tctttgatac ttcaaaccct acttcctttt gcacaagagg aattaaaccg
     2941 tgcgaaaaaa gttaaaaaac ttggcggagt acaaatagaa ggacttgaaa aacttgataa
     3001 agtcatttat cttgatcaaa gcccaattgg gcgcacacca cgttcaaatc ctgccaccta
     3061 tacaggtgct atggatgaaa tcagaaatct ttttgccgcc actaaagaag ccaaaatgcg
     3121 tggttataaa gctggacgct tttcttttaa tgtcaagggt ggaagatgtg agaaatgtag
     3181 cggagatgga gaaatcaaaa tagaaatgca ttttttacct gatgttatgg tagtttgtga
     3241 tacttgcgag ggcaaacgct acaatgatgc cacgctagaa atcaaatata aaggcaaaaa
     3301 tatcagtgaa attttaaata tgagtgtttt agaagcgagt gaatttttta cagccgttcc
     3361 taaaatcaaa caaaaattag atactctagt aaaagtgggt ttagattatc taactctagg
     3421 acaaaatgcc accaccttaa gtggaggtga agcacaaaga atcaaacttg ctaaagaact
     3481 aagccgtagc gatacaggaa aaacgcttta tatacttgat gaacctacaa caggactgca
     3541 ttttgaagat gtcaataaac tcatcttagt tttacaacat ttagttgatc ttaaaaattc
     3601 tgtttttgtg atagaacata atttagatgt gattaaaaat gctgattata tcatcgatat
     3661 ggggcctgaa ggcggagtta aaggtggaaa agttataagc acaggaagcg tggaaaaagt
     3721 cgctaaagaa cacaaaaaaa cccgttctta cacaggatat tatctagact tagagcttaa
     3781 aaatacacaa aaatcataat tttatgtttg attttttata taatgatatt agctatttgg
     3841 ggcttttcat ggtgtgtttt ctttcaagca cactattacc cttagcaagt gaagcctttg
     3901 ttttaggctt tataaaactt gattttactc cgaatttggt acttatcgta gccactttgg
     3961 gtaatacctt aggaagttta agtacttatg ctttagcgta ttttggaaaa gaaaaaattt
     4021 tagaaaaata ctttagcaaa tccttaaaaa aattagaaaa tttcaatgct aattttgcta
     4081 aatttggaag tatatttgct ttttttactt ttttaccttt agtaggagat ctttttgcct
     4141 tgggacttgg ttttgcgaaa tattcttttt taaaaactat attttttatc ttacttggaa
     4201 aattaagtcg ttatgctttc ataattttca tagcaaactc cttttaaaaa cctctctttt
     4261 ataagtttta aaagctttgc attgtctaca ttttttagaa ttttaacaca atttttagtg
     4321 cttaaatcca cccccatact catttttggt tctttaaaac aacgccaact catacctctt
     4381 gccaaagaac tatcgcaaat aacatcagca taacactcat caaaatctgc aatactagaa
     4441 tctaatgcgt aagctatcgt taaagcatca tgtatccaag ttccctttat accacgtgtt
     4501 ttagaggcat aatcaatcca aacacctaaa gtttcaacga taaaatcaca taaaatattc
     4561 ttaccttgca actcttttaa atcctcgtgt gttaataaag tctgcatggt tgcattataa
     4621 ggtatgagtg taattttagc tcttgaattt agcactatac tagccgcctc aggatcaaaa
     4681 ccaaaatttg tatctttagt gtaataaggc atatcaaaac tgccgcccat aataaaaagc
     4741 tctttaagat ttatatcaaa atctttaaaa attttcatag tcatagcgat atttgtcaaa
     4801 ggtcctatcg cacaaataga aatttcttta ggatttttac tcaccaactc acccatttta
     4861 aaaatcgcat caggatttat attttctaaa atttcaggac tttttatatt ttcccaaaga
     4921 tattcaagtt taaaattttt aacactttca tcaagtcttt gacgccaagc tttacttggt
     4981 tcttttaggg cttcattcgc tcccaaataa acggggatat ttaaatttaa acgtttaaat
     5041 aaatccttag ccacactata ggcaacaagg cttggaacat taccgcaaac tgtgcttagc
     5101 atttcaagtt tgatttcttt agatgacaaa atcaaagcaa gtgctaaacc atcatcagta
     5161 tttgctcctg caatagcatt gcctatgtcc gtgtctaaga taagtctcat atcgcatctt
     5221 ctattttatt taaatctcta cctctagttt ctggcgcaaa aaatgtagtc gcaaaaccta
     5281 tacctgcagt taatacaaaa tatgtcgcga taggccacca agcgccataa tatgcaagca
     5341 aagcagaagc caccataggc gctgttcctc ctgaaagaat agaacctagc tccttagcaa
     5401 aagccatttt tgtataacgg ttttttaccc caaaaagctc cacaccccaa gccgcttgca
     5461 caccaaaaat ccctaaagat gctaaagaca tacctacaat aatagttaaa atcacaataa
     5521 tttcattttt actatctaaa agcataaaag caggaaaagc ataaatcatt aaaagcaaac
     5581 aaaacattct ataagtaata catcttccaa atttatcact taaataaccc gccaaaggaa
     5641 taactaaaaa ccctaccaat gaagctatca ttaccgctgt agtagctact gatttgtcta
     5701 aaagtaaaat tttagtcaca taacctacaa taaaaccttg cgcaagataa gaaggtccat
     5761 tttcgcctat tcttaagccc accatagtcc aaaaagcacg acttctttgc caaaaacttc
     5821 tttcatcttt tttcatatgc ttttcgttat taagacgcaa tttcatcatt tcattttttt
     5881 gcttttcaaa aacaggggtt tctttgacat gaaaacgaat atatacagca aaaagagcga
     5941 ttaaaatact tcccataaaa ggaactctcc agccccattc tttaaaactt gcttcatcca
     6001 tttgtaccat caaaagccat acaaaagacg caagcaaagt tccactattt gatcctaaag
     6061 caatcacaga agaaacaagc cctcttctct tgctaggagc atattctcct agcataactg
     6121 ttccacctga aagttcagct cctgcgccaa aaccctgcat aaaacgcaat gcaaccaaac
     6181 aaataggcgc ccaaacacca atcactgcat aacttgggat aaaacctatc agagtagttg
     6241 aaattcccat taaagctatt gtagccatca taacattttt tcttccgtgt ttatcatcta
     6301 aatgaccaaa aaacaaagcc ccaataggtc ttgcaataaa acctatgcca taagttacaa
     6361 aactaagcaa aagtgcaatt actggagttt gctcaggaaa aaattgttgc agctgctaaa
     6421 ccataaagtg caaaatctgc atattccata gcagttccca accagcaaga aaaaactgcc
     6481 tttttaaaaa cttttctacc ttcaggtgtg ttaaaattct tatctgcaat tccatcaatt
     6541 tgctgatttg tcattacatt ttccttacat tatt
//
LOCUS       DAQSLY010000088         6444 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.089, whole genome shotgun sequence.
ACCESSION   DAQSLY010000088 DAQSLY010000000
VERSION     DAQSLY010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.089"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..317
                     /locus_tag="R2H98_001359"
     CDS             <1..317
                     /locus_tag="R2H98_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024227.1"
                     /translation="NLCISKDFSHLFENLVLSELFKFKEDFFYNKYFNFYSQISKIAY
                     ISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDSFFEQGVKFEVISFDKFSL
                     GF"
     gene            complement(314..1045)
                     /locus_tag="R2H98_001360"
     CDS             complement(314..1045)
                     /locus_tag="R2H98_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEE9024228.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQTNLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVYSYVLNLNRHFAYEKFRDARAKFASEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(1020..1769)
                     /locus_tag="R2H98_001361"
     CDS             complement(1020..1769)
                     /locus_tag="R2H98_001361"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEE9024229.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1766..2371)
                     /locus_tag="R2H98_001362"
     CDS             complement(1766..2371)
                     /locus_tag="R2H98_001362"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEE9024230.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKTLENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKVRLD
                     SQIDIEEKLKKADFIIKNTNSYVDFRQECVKVIQEISKGKM"
     gene            2432..3421
                     /locus_tag="R2H98_001363"
     CDS             2432..3421
                     /locus_tag="R2H98_001363"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEE9024231.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
     gene            3632..3973
                     /locus_tag="R2H98_001364"
     CDS             3632..3973
                     /locus_tag="R2H98_001364"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024232.1"
                     /translation="MHNLNEALFQKKIKEIRLKAIASIICGFLGIIPYLGVLFVLASW
                     ILFFIVLYDLKIYGGAKNLFKNFLISVGIGFFGILVNTSILFAMLKPRTGIFGGLYFN
                     QDNILWLLLYF"
     gene            3991..4848
                     /locus_tag="R2H98_001365"
     CDS             3991..4848
                     /locus_tag="R2H98_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024233.1"
                     /translation="MALIFPFLKAFYYEIARTTKQKYFTYAFNTFYLGLLTLIIGIGL
                     VFLLASLVFWILAWVKFKEFDEQELSNLEERLAKAQKKVFDFDLKWIKITMASFIILN
                     LLVLTFSFILEVISFEDFRFYYTKKTLFYTAIILALLSVFLFCKKIKNYKLFIYFFIW
                     QGLSVFGSHLLFIPDFMVDQQIVYGSLNIILSLCYIIFAFLFFKILIQITKEKLFYLI
                     FAFYVCIEILIILIFFIFMMVDNYYIFTKSPIKMLIDNYKLLFQVVYFVSFLIVWLML
                     KGQKNVKIC"
     gene            complement(5328..6193)
                     /gene="dcuC"
                     /locus_tag="R2H98_001366"
                     /pseudo
     CDS             complement(5328..6193)
                     /gene="dcuC"
                     /locus_tag="R2H98_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         2134 a          874 c          986 g         2450 t
ORIGIN      
        1 ataatctttg tatttcaaag gatttttcgc atttatttga aaatttagtt ttaagcgagt
       61 tgtttaaatt taaagaagat tttttttata acaaatactt taacttttat agccaaatat
      121 ctaaaattgc ttatatttca agtccaactt tagatattga tttgattaaa ttacgtgcta
      181 agaaaatttt accaaaggct ttagaacttg gaatttttca tgtgattttt atcactcttt
      241 caagcgagga tagttttttt gagcaagggg ttaaatttga agtcatatct tttgataaat
      301 tttcacttgg attttaggtg ttgtttgagt ttgtatcgta tttttcaagg ttgtatcgtt
      361 tgatgatttt tgtaataaga ttgatataat atcccttgcg ttcagaataa gaatctaaag
      421 ttttaatagc ctctagtcct gttatctctt tgccttcgct tgcaaattta gctcttgcat
      481 cgcgaaactt ttcataagca aaatgacgat ttaaatttaa aacataagag taaacactat
      541 cttgcagact atcaaaaatc ttaattttat gttttttatc tggatgtctt aaatcaggaa
      601 ttaaaccttt ctcaccccaa gtccattctc caaaaagatt atttgcttct cttgcgaagc
      661 gacttgtacc tgtagcactt tcaactaaag cttgggctat acccatggat tttggaattt
      721 tttgaatacg ttttttatat tctgcaaaat cataaagatt ttcaatgcga tatttgtttt
      781 ttatcgtgat aagtttttca agatttgttt gatttgaagt cctaaagcct gttttgtaag
      841 catctttaaa aaaggcttcg ataaaagctc tttcttgttc aattttttta aagctttgat
      901 caaacatttc attcattttt ataaaaaaaa tttgtctttt ttgatctata tcaagtttgt
      961 aatattcctc tccaaagcca ttttttagat catcagcaaa aagtgggatt agaaaaagac
     1021 taagaaaaat tataattggc ttcaaaacaa tactttacct ttccttcaaa aaacaattct
     1081 tcatttttat atgtaaaccc aacctcttca ccacttttag gagttatttt aactttattt
     1141 tgtacttttt tatttaaaaa tgccagataa aaacaagccc ccattcctgt gccacaagct
     1201 aaggtttcat cttcaactcc gcgttcatag gtacgaactt ttaaatgatt ttcatctaaa
     1261 atttttacaa aattaacatt ggcattatat ttttgtctca ttttttgaca aagtattgta
     1321 tcaaattcat ctaaattttg acaaaaatgc actagatgtg gaactccagt gtcgcaaagt
     1381 tgccaagttt ttcctaattc ttcaaaagta ttttgcacgc tttttatttt gcctaaagat
     1441 acttcaactt tatcttgatt tacctttgct tttattattc ctgcaccggt taaaaaactc
     1501 atgttaggat ttattttgtt aatatgatgt gcaaaatgtg ccgcagccct tgagccattg
     1561 ccacacatag cagcccttga gccatcgtta ttataaaatt cccattcaaa gtcgtatttt
     1621 tcatgaggca atatcacgat aaagccatcc ccacctatgc cctcataacg attgcaaagt
     1681 tctttagcta aagcacttct atcttctttt ctatcagcat ttgttatgac aaaatcattc
     1741 ccacttgcac aatatttata aaatttcaca tttttccttt agaaatttct tgtattactt
     1801 taacacattc ttgcctaaaa tcgacataag aattagtatt tttaatgata aaatctgctt
     1861 ttttaagttt ttcttcaata tctatttgag aatcaagtct cacttttgca gcttctaagc
     1921 tgagcttatc tctttgcatg attcttttaa ggcttaattc tttaggtgtg taaattacaa
     1981 tgactttgcc taaattttca taagcaccgc tttcaaaaaa aagaggaatt tctacaaaaa
     2041 aagctttatt ttctttatct agaatttgca tttgttctaa aattttagct cgaattttag
     2101 gatgagtgaa attttctaag gtttttttag cttctttgtt gttaaaaaca atttctccaa
     2161 ggatttttct atcgattttc ttttcttttg tgagtaaatt ttttaagtta aagggagaaa
     2221 aaatcttttc aagttctaaa gcattttcat ctaaaatttt atgagcaatt ttatctgcgc
     2281 taatgctttt aaagcctaaa gaattcgcta tttctataaa agtgctttta ccacaagcaa
     2341 ttgaagcggt tacaaaaaaa gcatttttca tcttatgcct tattaaaact tttttcgtta
     2401 aaataccttt ttagttctta aaggaaaata aatgaaaatt tcatatgaag atgcaggcgt
     2461 aagtatagat aatggaaatg cctttgtaga ggctataaaa cctttggtta aagaaacttt
     2521 taatgataat gttgtaggcg gaattggttc ttttgctggt gcttttagaa tgccaagtgg
     2581 ttttaaaaag cctgtgattt taggtgcaac agatggtgtt ggtaccaagc ttcgcttggc
     2641 aattgatgct aaaaaatatg atactatagg gcaagattta gtagcaatgt gtgtgaatga
     2701 tttgatttgt aattttgcta cgcctttgtt tttcctagat tattatgcta cagccaagct
     2761 cgaagtagaa gtagcaaagg ctgttgtatc aggcattgcc aagggatgta agatggcaaa
     2821 ttgtgcatta atcggcggag aaactgctga aatgcctgga atgtatgcaa aagatgattt
     2881 tgatcttgcg ggttttgcag tgggtatggc tgaagaagat gagatcgata gaagtaaatt
     2941 tgttaaaaat ggtgatattt tattggcact tcctagttca ggacttcatt caaatggtta
     3001 ttctttagct agaaaagtac tttttgaaag tttaaaatta aaatttgatg acaagataga
     3061 gggtaaaaat ttaattgata ttttgttaga acctacaagg atttatgtgc gtgattttct
     3121 tacactaaag ccttatatca gtgctctagc tcatattaca gggggtggtt tagtagaaaa
     3181 tttaccacgc gttttacctc gtggtatggg tgcaactata cgcaaacatc atcttaaaac
     3241 tcctgaaatt ttttatacta taggacaggc tgtagaagaa agcgaaatgt atagaagctt
     3301 taacatggga gtgggtttag taatggttgt agatccttct aatgtaagta aggttttaga
     3361 aaattcagat gcctttatta tcggcgaaat ttgcattaat gaaggtattg ttttagagtg
     3421 aaaacaaatt attatgatta tttatgtgct aaaatgtatg taattttgcc cataaaagcc
     3481 cataaagaca aactaaaatt ttatctttct tatgtaaata agaaagataa aatttttaga
     3541 gttaatgtgt ggaagtgggc ggttttgata aaaattgcca aagatgataa aacgaaatat
     3601 ttttgttcga atgtattaaa taaagggtaa aatgcacaat ttaaatgaag ctttgtttca
     3661 aaaaaagata aaagaaattc gcttaaaagc aatagcgagt attatttgtg ggtttttagg
     3721 tatcattcct tatcttggag ttttatttgt tcttgcgagt tggattttat tttttattgt
     3781 gctttatgat ttaaaaatct atggtggtgc taaaaatttg tttaagaatt tccttattag
     3841 tgtagggatt ggattttttg gtattcttgt taatacaagt attttatttg caatgctaaa
     3901 gcctagaact ggcatttttg gtgggcttta ttttaatcaa gataatattt tatggctatt
     3961 gctatatttt tagtattaca ttttgctatt ttggctttaa tttttccttt tttgaaagct
     4021 ttttactatg aaattgctag aacaacaaag caaaagtatt tcacttatgc ttttaatacc
     4081 ttttatttag ggcttcttac tttgattatc ggcataggct tggtgttttt gctagcaagt
     4141 ttggtttttt ggattttagc gtgggtcaaa tttaaagaat ttgatgagca agaactttca
     4201 aatttagaag aaagattggc aaaagcacaa aaaaaggttt ttgattttga tttaaaatgg
     4261 attaaaatca caatggcttc atttataatt ttaaacttgc tcgttttaac attttcgttt
     4321 atattagaag ttattagctt tgaagatttt aggttttact acacaaaaaa aactttattt
     4381 tacacagcca taatcctagc tttgcttagt gtgtttttgt tttgtaaaaa gataaaaaat
     4441 tacaaacttt ttatttattt tttcatatgg caaggtttaa gtgtttttgg tagtcatctt
     4501 ctttttattc ctgattttat ggtagatcaa caaattgtat atggaagttt aaacataata
     4561 ttaagtctat gctatattat ttttgctttt ttatttttta aaattttgat tcaaattaca
     4621 aaggaaaaac ttttttatct tatttttgca ttttatgttt gcatagaaat tttgataata
     4681 ttaattttct ttatttttat gatggttgat aactattata tatttacaaa aagtcctata
     4741 aagatgctca tagataatta taaattactt tttcaagttg tttatttcgt ttcattttta
     4801 attgtttggc ttatgcttaa aggacaaaaa aatgtaaaaa tatgttagaa tgatgaaaaa
     4861 atactatttt acgtagatgt ttattaggat atattcgtat gtcttaaagc tctttatggg
     4921 gtgttaagta attataatat ttaaaaatta aaaaatatat agtttatcca catcttctaa
     4981 aaatttgatc atctcttttt tcatttttta gagctagaaa acatatgagt gaaattgctt
     5041 taaagttagt tagagcagtt gatactaaat attttgataa gaaatttaaa tagattgatt
     5101 ttacttaaat taaagacttt ttgcctcgtg atacaaaatt aagtgatgaa tttttagtta
     5161 aattgatatt aaatatgaaa aaattataaa tattaatact ttttcaaatt aatagtaaat
     5221 atagagggtt tgattttttc acaaaagatt tggatagaac ttgcaaaaaa ctttcttcaa
     5281 tatttatact tttaaatttt gatgcaaatc ctattcaata tagcattggc aaaataaact
     5341 aaaaagctta aaatagctat actcaaaaga attccaaacc atgcaaaatt tcctgttcca
     5401 agatttgaaa ccgcgttagt aaggatatta actccaccaa gtgctttaat gcctttagca
     5461 catactccag cggcgatgat tatgcttacg actgagataa aaatttcagc catagccttt
     5521 taaaatcacc atcatatctt cgcctaattt tctagcattt ctgtgtcttg caaattcaac
     5581 aagaaaaact aaagaaattc ttacaaaatt tgctatcaca acatcgagct tgatagtaaa
     5641 aaaatacgct ataaataaaa atataacagg taaccaagga aagagtgtgt aaaaagtagg
     5701 gcatttagga tcaatgattt gcggaatttc aacttcatca tttaaaacac ctttttcttt
     5761 atctctttta tcaatccaag caaaataaaa aggaatcaag atggcaataa ttacaacata
     5821 ggtagtcaca ctataaattt ggtaatttaa aaaaagccct acgacattat cactttgtcc
     5881 taccatatct gccatattga ttgaatttcc atcttttgga tcataatcaa gtgcaattaa
     5941 agaaagcgca catacagttg taataggacg gattttaagt gagattaaaa caggatacat
     6001 acatgctaac aaaagcaaaa gcaattcagc atagctagaa atgacgattt ttaaagccat
     6061 tccaacaaca aaagttccac ttaaaattaa gtatttattt tttgattttt cctgagggtt
     6121 tatttgctaa aaaagcaagt tttgccgaag cattgatatg tttcatgtaa gcagtaaagc
     6181 ctgccacact catgataata agccctgctc cagaaagctg acttttaaaa gttgctgtga
     6241 taaaagataa ctatcaagta aaacatttaa aagcttgtat gttctctact tggagctttt
     6301 ggtataggtg ttcctgtgat ataaaaagca aaaataagca agataatacc tgaaagaaaa
     6361 aatacaaaaa tgggattgta ttttttgagt atatcataaa aattagcata gggtctcttg
     6421 aatttacaat aaattggatt ttat
//
LOCUS       DAQSLY010000089         6439 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.090, whole genome shotgun sequence.
ACCESSION   DAQSLY010000089 DAQSLY010000000
VERSION     DAQSLY010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6439
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.090"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..156)
                     /locus_tag="R2H98_001367"
     CDS             complement(<1..156)
                     /locus_tag="R2H98_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024234.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNL"
     gene            complement(157..465)
                     /gene="fliN"
                     /locus_tag="R2H98_001368"
     CDS             complement(157..465)
                     /gene="fliN"
                     /locus_tag="R2H98_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEE9024235.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(465..887)
                     /locus_tag="R2H98_001369"
     CDS             complement(465..887)
                     /locus_tag="R2H98_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEE9024236.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(958..1707)
                     /locus_tag="R2H98_001370"
     CDS             complement(958..1707)
                     /locus_tag="R2H98_001370"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEE9024237.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQSVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(1700..2878)
                     /gene="trpB"
                     /locus_tag="R2H98_001371"
     CDS             complement(1700..2878)
                     /gene="trpB"
                     /locus_tag="R2H98_001371"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEE9024238.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(2875..3474)
                     /locus_tag="R2H98_001372"
     CDS             complement(2875..3474)
                     /locus_tag="R2H98_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEE9024239.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(3461..5062)
                     /gene="trpD"
                     /locus_tag="R2H98_001373"
     CDS             complement(3461..5062)
                     /gene="trpD"
                     /locus_tag="R2H98_001373"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEE9024240.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVVALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEVRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(5059..6309)
                     /locus_tag="R2H98_001374"
     CDS             complement(5059..6309)
                     /locus_tag="R2H98_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEE9024241.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
BASE COUNT         2232 a         1233 c          704 g         2270 t
ORIGIN      
        1 taaatttttt tctttttttt gagaaatctt gccattatag gcattatcaa aagaaagcat
       61 taaatctact cgatcatttc tatcgtagat attataacta atcaactcaa cactatataa
      121 aggtaaaatt aaaaaaaata atactagcaa tctcatttaa atttcttttt taaagtattg
      181 aagcacagtc ttagaatcca aaatttcatt aattcttata gcgagatttt tttcataaac
      241 cataacctcg cctttaccaa aaattctttt attgatataa agctcaacgc tttctccagc
      301 aggcttttca agatcaataa ccgagcctac ttcaagtttt aaaagctccg ctacactcat
      361 atttgtagtt ccaagctcgc ttacaaaatc tactgtaata tctaagatat cttcataaga
      421 ttgtaaaagc ccatgatgaa tgttaaactc tatatcatcg ctcattattt gcaatatcct
      481 attctaaaat aacaattttc aaatttataa gttaaagctt catctagaac tatttcagaa
      541 aaatcaactt ttcctaaata ttccggaatt ccgagtttat actcgtcatc acccttggca
      601 tcatttaaca aatttttagc ataacctata atctgattgg cacattcttt agttaaatcg
      661 caccagtcat cttctttaaa tttttcatca ttaattaaaa tttctgcaat tttttttaaa
      721 aattcttttg gaaaaaataa ataaaaatta cattctcctt cgcttttgcc catgatagga
      781 atactcgctc cataaagttc accgcttata tcttgagctg cttcaatgcg aagtcttaag
      841 atatgctcgc aaaaatgagt gatggaatac tcaagaatct ttaacataac taccaccttt
      901 ataaaaaact taatttaaaa ttatagtaaa tataaaataa aaatatgttt taaaatttta
      961 ttttttgaaa atttcttcaa tatctttcat tattatatcc aaatttcctt gtttaaaaca
     1021 ctttactata ctagttccta caatcactcc gtcagcaact tttctcattc tttttacatc
     1081 ttgattattt tgaataccaa aacctacaaa aataggcaaa tttgtaaaag atctgatttc
     1141 ttttacttta tcttgcaaga ttgcttcttc gacacttttc gtacctgtaa tacctatact
     1201 tgctaataaa taaataaaac ctttagcatg ttttactaac tttttaaccc tttctttagg
     1261 ggttgtaacg cttacaagtg tgattaaagc tatattatat ctttcacact ctttaattaa
     1321 atcatcactt tcttcaaaac ttaattcagg tacaatcaaa gcacaaatcc ctaaagattt
     1381 tgcttttttc acaaattttt ccaagccata agaaaaaatt aaattataat aaaccataaa
     1441 aaccaaagct tttttagttt ttatcctagc taaaagctca aaaacactat gaatatccac
     1501 gctttgatca agagctattt ttgccgcatc tgcaataatc tcaccatcgg caataggatc
     1561 actataagca acaccaagtt ctaaaatatc aatagggctt tgatccaatc tttgcaaaaa
     1621 agcttcactt gtttgaagat ttggataacc taaaaccgta taagccacat ttgcattttc
     1681 tttataaaat tttctaaaat caaccataaa tcaccccttt tttataatct ctaatcattt
     1741 gcatatcttt atctcccctg cctgaaagat ttactactat cacgcttttc ttttttaaag
     1801 ttggacaaag tttttctaaa aatgccaaag catgcgaact ttcaatcgct gcaataatac
     1861 cttcttcttt acaaagtaat tttaaagcct gcatacattc ttcatcactt atagcatgat
     1921 attgcgctct tttgctttca aataaaaaag catgcaaagg accaattcct ggataatcaa
     1981 gccctgcaga aacactatgt acaggcaaga tattgcctaa atcatcttgt aaaaccttgg
     2041 ttttcatacc gtgaataatg cctgtttttc ccttatttaa agtcgctgca tgataaggcg
     2101 tatcaatgcc aagcccccct gcttcaatac ctataagttt aacattttca tctttgataa
     2161 aatcataaaa aatcccagct gcattgcttc cacccccaac agctgcgata atataatcta
     2221 cttttttatt gagtttttga agttgcattt tgcattcttt tcctataata ctttgaaaat
     2281 gcattaccat tttaggataa ggataaggac ctaccgcact tccaaccaca taaaaaatat
     2341 ttttaatatc tccaacccaa gcttgaatag ccgcagtagt agcttctttt agagttttaa
     2401 gcccactttg tactgcatga attttagcac ccaaaagctc cattttataa acatttaaag
     2461 cctgtctttg cacatcggtt gcccccatat aaatttcaca ttcaagtcct aaaagtgctg
     2521 ctgcagtggc tgttgcaagc ccgtgttgac ctgctcctgt ttctgctatg atttttttct
     2581 ttcccatttt ttttgctaaa agggcttgag cgatggcatt attgatttta tgtgctccgg
     2641 tatgatttaa atcctcgcgt tttaaataaa tttcatgctg atattttttg cttaaatttc
     2701 tagcaaaata aagtggagta ggacgcccta cataagtttt taaaagctcg tttaattctt
     2761 ttttaaagag tttatcttta gaaaatttca aaaaagcacc ttctagctca tttaaagcaa
     2821 acattgcact ttcaggcaaa aactgcccac caaaatcccc ataatacgct tttttcattt
     2881 tttcaactcc tttaaaattt gttttatttt gttgatatct tttaagcctt tttcatcttc
     2941 aagttttgaa ttaagatcta aaattttagc tcccgtttgt acagccttat gaacattatc
     3001 caaacctatg cctccggcta atataaaatc tttagtataa gaacctaata aagtccaatc
     3061 aaaacttatt ccattaccgc cctttaaaat tcccttagca tcaaaaagta ctaaattagc
     3121 aaaaatttca ctttttaaat ctaaactatt ttccacacta atcacctgcc aaacaaaaac
     3181 attttgcacc tttaaaattt caaattcttc tttggtaata gtgcgataaa tttgtatccc
     3241 atcaagctta gcttctttaa tacatcttaa aatttgttcc aaattttcat ctacaaaaac
     3301 accgacaact tttttatctt tttcatgaaa aattgcactt aaatttcttg cttgttctaa
     3361 actcactctt cttggacttt tagcaaaaat aagtccaaaa aaatcaatat ttaaaaaagc
     3421 taaatctttg gcattttttt catctttaat accacaaatt ttaagcttta gcataagctt
     3481 gatactcctt aaaatattct ataaccttac ctgaataaat ggcttctaaa atcatatctt
     3541 tagccactaa aggcgaactt gctttattgg ctgtataaag tgcaaacata gcatttaaaa
     3601 ctaccaaatc aaattttgcc ccttgcattc taccgcttaa aatatctttt aaatctttag
     3661 cgttgtcata tgcactagat cctatgattt cactatgaaa agctctttta aaaccaaatt
     3721 gttcaggaca gatagaatac tctaaaattt ctccttcaca aagctcataa attttacttt
     3781 catcgcaaat actaagctca tccataccat catttcctct taccactaaa gcttttttgc
     3841 gtcctaaatt ttttaaaacc tctatcaaaa gcctatgcac aggtgcgtga taatttccca
     3901 taagttgata ttttaacttt aaattagggt gcaataaagg acctaaaaca ttaaaaaccg
     3961 ttcttactcc aagtcttgat ctgacctctt taagttctcc taccaaagga tgaaaaaatg
     4021 gagcatgtaa aaaactaagc ccttgattat ttagttgttt taaaactgat tctaaagtgt
     4081 ttggagtagt tatatttaaa gcttctaaca catctgtact tccgctagaa cttgaaatgg
     4141 cacgatttcc gtgtttggct acttttactc ctaaagctgc taaaataaaa gcactagtcg
     4201 tagaaacatt gatactttta aaaccatctc cacctgttcc acaaatatca atcatctcac
     4261 tctcatcact aaaagtttga gaatatctta aaatttgtct tacaaaagca cttaaagatt
     4321 tttcatttaa ggacttttca gtgattaaaa tcaacaaagc cactacttgt aaaatttcat
     4381 aatctttaga cataataatc ttacaaattt gctcaaaatc atcgctttgt aaaaaatgat
     4441 tttcactcat tttttgcaaa taaaaactta aaggattttc ttgtttttgt ggttttttta
     4501 tatcttgttt taaaaaatta gaaaaaagtt gcaagccata ttcactaaaa tagctttcag
     4561 gatgaaattg cacaccataa taaggtaaat ttttatgtcc caaagccata atcacaccct
     4621 tttcatcaag ggctaaaatt tcaagctcat cactaagctg tttaacctct aaagaatgat
     4681 aacgcattac actaaaattt gaaggcaaat tagaaaataa ttcattttcc ctgcactgtt
     4741 ttatcaaaga attttttgca tgcataggct cttgcatctt aaccactaaa gaatcaaaag
     4801 ctaaagctaa agcttgatgt cctaagcaaa tgcccaaaac agggatatta agccttgctt
     4861 taaaaatttc aagacaaatc ccactttgac ttggatgctt tggaccagga cttaaaataa
     4921 tatgagtagg atttaaattt ttaatttcac tcagagaaat tgcatcattt cttcttacta
     4981 aaatttcatc attgctgagt tgctctaaca tgcttttaac attaaaaaca aaagaatcat
     5041 aattatcaat taaaagtatc attgattttc cttttttaaa ttttcaaaag ctaccaaaag
     5101 cgccttgcgt ttagcacaaa tttctgcata ttctttttga ctctcacttt gcaaaacaat
     5161 acccgcccca cttgccaaat aagccttatc ttgagtaaaa aaagcgcaac ggattaaaat
     5221 cgctaaagtt atgtcttcgt taaaatttaa aaatcctacc gcaccaccat aaattccacg
     5281 atcgcaatct tcaagctcgc tagtgatctc taaagctctt attttgggag ctccgcttaa
     5341 agttcccgct ggaaaaactg cttcaatcac atcaaaaata ctcgcatctt ctttcatatt
     5401 ggcatacact tcactcacta tgtgcattac aaatttattt ttaataatag aaaaaagatt
     5461 ttccactctt gtttgagtgc caaatttaga agcatcattt cttgctaaat ctacaagcat
     5521 cttatgttca ctaagttctt tttcatcgct taaaagatct ttttctaaag ctaaaagatc
     5581 acagttattt tccaaatttc tagttccagc aataggggct aaataaatct ctcttttttt
     5641 aattttcaat aaaaactctg gagaagaacc caaaacaaca ccatatttac ttggaaaata
     5701 aaacatataa gcgcttggat ttaaagcact taaactctca taataatcaa aagcatttac
     5761 ttgatgtttg atacaaagtt gcttacttaa gaccacttga aaaatatctc cacttaaaag
     5821 atattctttg gctttttcgc acatttttaa aaaatcattt ttttcatctt ctaaagaatt
     5881 taaaatttca aaatcatttt tttgtttctt tttcattggt tcaatatcat cttttaaata
     5941 ttcaaaatat tttgaagcac caaatttaaa aaacatcttg ctatttttct cataaatcaa
     6001 ataagcctta gcattggcaa ataaaaataa aggaaaatca taatttttct tagaagaaag
     6061 tggaattttt tcaaacaaag atacaaaatt tgcactaaaa actccaaaaa atccagcaaa
     6121 gtcgcaaatt ttattcttgc ttaaagcttc ataatatttt gccttaaact cgctaaagga
     6181 taattcatta gcatctaaat aatcacaatc aatccctata attaccttag tcaaatcctc
     6241 tgcaaaataa gaattttcaa atttttcaag gatttgtctg taataaaaat ttacattttt
     6301 aacaaacata ataaaccttt ttttaaaaaa taaattaaaa taatattaaa gaaaaaattt
     6361 agataaaaag aagtttagaa acgccaagag cgaagagtat gtgtaagttt taaaatcaaa
     6421 gaattactaa aaaaaccat
//
LOCUS       DAQSLY010000090         6370 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.091, whole genome shotgun sequence.
ACCESSION   DAQSLY010000090 DAQSLY010000000
VERSION     DAQSLY010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.091"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            27..158
                     /locus_tag="R2H98_001375"
     CDS             27..158
                     /locus_tag="R2H98_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEE9024242.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            155..1159
                     /locus_tag="R2H98_001376"
     CDS             155..1159
                     /locus_tag="R2H98_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEE9024243.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1159..2775
                     /locus_tag="R2H98_001377"
     CDS             1159..2775
                     /locus_tag="R2H98_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEE9024244.1"
                     /translation="MYKTLQYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISVGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRMDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYSKIHLNIDEASLNLRASYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2759..3667
                     /locus_tag="R2H98_001378"
     CDS             2759..3667
                     /locus_tag="R2H98_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9024245.1"
                     /translation="MMLEIKNLSKNFEKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFYRLKLRY
                     KNIEFFMLLSSNYNLEEKINFDIINF"
     gene            3703..4908
                     /locus_tag="R2H98_001379"
     CDS             3703..4908
                     /locus_tag="R2H98_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEE9024246.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     TFIKERLGVQIETAQIDADDSNAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDKFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(4921..5612)
                     /locus_tag="R2H98_001380"
                     /pseudo
     CDS             complement(4921..5612)
                     /locus_tag="R2H98_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(5681..6343)
                     /gene="sodB"
                     /locus_tag="R2H98_001381"
     CDS             complement(5681..6343)
                     /gene="sodB"
                     /locus_tag="R2H98_001381"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEE9024247.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         2155 a          857 c         1048 g         2310 t
ORIGIN      
        1 cttatcaaaa tatctaaaag gaattaatgt ctatgaaaaa aataatttta tttttactat
       61 gcgttggctt tgcttttgct tgctctgaac attctcatac cgattttaaa gatcttaata
      121 aaaccgagta taattctcaa ttaaaggata aaatatgaaa aaaatcttct ttatgttttt
      181 aacggctgtt tcatttttag gtgctagtga gcttaatatt tactcagcaa gacattataa
      241 tgctgatttt gaaatcataa aaaaattcga agaaaaaaca ggtattaagg tcaatcatac
      301 tcaagctaaa gcttcagaac ttattaaaag actttctctt gaaggaagta attctcctgc
      361 tgatattttc atcacagctg atatttcaaa tcttacagaa gctaaaaatt taggactttt
      421 atcccctgtt tcatcaaaat atttagaaga atttatacct gctcatttaa gagataagga
      481 taaagaatgg tttgcgatta caaaaagagc aagaattatt gcttacaaca aaaacgcaaa
      541 tatcgatatt agcaaaatga aaaattatga agatttagca aaagctgaat ttaaaggaga
      601 aattgttatg agaagtgcta cagctcctta tagtaaaact cttttagcat ctattatagc
      661 taatgacgga aataaagagg ctaaagcatg ggctaaaggt gtgcttgaaa atcttgcgac
      721 aaatccaaag ggtggagata gagatcaagc tagacaagta tttgcaggcg aagctaaatt
      781 tgcagttatg aatacttatt atatagggct tttaaagaat tctaaaaatc caaaagatgt
      841 agaagtgggg aattctttgg gtattatttt tcctaatcaa gacaatagag gaacgcatat
      901 taacattagc ggtattgcta tgacaaaatc aagtaaaaat caagatgcgg ctaaaaaatt
      961 tatggaattt atgttaagtc ctgaaattca aaaaattctt actgatagta attatgaatt
     1021 tcctataaga aatgatgtag aattaagcca aactgtaaaa gattttggaa ctttcaaaga
     1081 agatcaaatc cctgtgagta agatagcaga aaatattaaa gaagctgtta aaatttacga
     1141 tgaagtcggt tttagataat gtataaaacc ctacaatact ataaactcgg ggcaatttta
     1201 cttgcccttt ttcttgcttt gcctattttt ggtatttttg ctgaactttt ttatatttta
     1261 tttcaaaatt ttaatacaag taatttaacc caattttcat ctattaaaga aaatttgagt
     1321 catttttttg attatttatt tttaaaattc atcaaagata cttttataat tagcgtggga
     1381 gtattgtgtt taagcttgat tttgggtgta agttctgctt atttgatcgc aaattatgat
     1441 ttttatttct gtaaaatttt agaaaaatta ctcattttac ccttggccat acctgcttat
     1501 attttagcct ttgtttatgt tggaattatg gattttcaag gattttttca tgaaaatttt
     1561 ggctttagga tggatttttt caatcattat ggtgttattt ttgttttggc tatttcttta
     1621 tatccttata tttatttatt tgctaaaaca gcttttaaaa gtgaagccaa agaggcttat
     1681 gaagtagcta aaatcatgaa atattctgaa tttagaattt ttacacgcgt ggcacttttg
     1741 agcgcaaggc ctgccatttt ttctggagct ttattggttt taatggaaac tttaagtgat
     1801 tatggcgcaa gtgcttattt gggagtggat actttttcgg ctggaatttt taaactctgg
     1861 tatgatttga atgattctta ttcttctagt gttttatcgg gtattttaat gctttttgta
     1921 tttttgatta tgtatgtgga ttattattat aaaaataaac atcattatag ttttaatcaa
     1981 aatttagctc tttttatcaa aaaaagaaaa ttaaatccta ttaaacaaat tctatcctgt
     2041 atttattgtt ttatgattgc ttttgtaggt tttattttac cttttatttg gctagtttat
     2101 tgggggctaa aagatcataa gctttttgaa tcgcaatttt atattatcag ttttcaaact
     2161 ataatcttag ctttaatcac tgctttaatt accacttttt tagcttattt tttgatgttt
     2221 agctctagga tagttaaaaa tcattttttt aatttattta ttttaaaaat aagttctttg
     2281 ggttattcta tacctgctgc tgctttaggg attagcatta tagtgctttt tgtatttttg
     2341 gataaatttt ttcacatgag tttattggga aattctttac ttgttcttgt ttttgcttat
     2401 ataattcgtt ttttagcgag tgcaatttat tctttagaag gaggatatag taaaattcat
     2461 ctaaatattg atgaggcaag tttaaattta agagcgagtt attttatttt attttttaaa
     2521 attcacacac ctttaatgaa acatttttta tttttggctt ttattattgt ttttattgat
     2581 acgattaaag aacttccttt aagtagaatt ttagcgcctt ttggctttga aactttaagt
     2641 gttaaagctt tctggtttgc aagtgatgaa agaatttatg atgcagcttt gccttccttg
     2701 tttatcgttt ttctttcttt aatggttgtt gtttggatgg ataaaatcac aaggaaagat
     2761 gatgttagaa attaaaaatt tatctaaaaa ttttgaaaaa atacaagctt tagaaaatat
     2821 caatcttcat gtcaaagaag gagaattttt aagcatttta ggaggtagtg gaagtggaaa
     2881 aagcacgctt ttaaggatta ttgctaagct tgaacaagct agttcttatg atttgttttc
     2941 ttgcaaaggt gaagtggctt tgatgtttca aaattatgct ttatttcctc atttaaatgt
     3001 tgagaaaaac atactttttg cactttacga taaaaaagat aaaaatcaaa ttttaaatca
     3061 tttgcttaaa acttttgaaa ttgaagattt aagatataaa aaaatcgatg aaatttcagg
     3121 agggcaagcg caaagagtgg cttttgctag agctatagca agaggatgtc agcttttgct
     3181 tttagatgaa cctttttcta atttggatca aaatttaaaa caggatttaa gaagagaatt
     3241 gaaaaaaatg atagaaaatc aaggcattac ggctattatg gtaactcatg atattgaaga
     3301 tgcttattgt atgtctgatc aaatcgcttt tttagaaaaa ggaaaaattt tagctcatgc
     3361 aaatcctaaa gagctttatt ttaagcccga ttttaaaagt gcgcaaattt tacctgattt
     3421 aaatatcata gaagaaaaac ttgatttaga agatgaattt tttgcttgga tagcttcaaa
     3481 aaattatatt tttggttatg cagaacttaa aataggaaat cgctttgagg ctaaaatttt
     3541 acaaaaagaa tttttagggg ctttctatag acttaagtta agatataaaa atatagaatt
     3601 ttttatgtta ttaagctcaa attataactt agaagaaaaa ataaattttg atattatcaa
     3661 tttttagtta aaattcctaa aaatctttta aggacaaatt tcatgaaaaa tcttttaatc
     3721 ataggcgcag gtggagtaag tcgtgtggct actgtaaaat gcgcaatgaa ttctgatact
     3781 tttagcaaaa tcactttagc tagtagaaca aaaagcaaat gtgatgaaat cgctactttt
     3841 atcaaagagc gtttaggggt tcaaattgaa acagcgcaaa ttgatgctga tgatagcaat
     3901 gcggttgtag aacttatcaa gaaaacagga gcgcaaattt tactcaatgt tgctttgcct
     3961 tatcaagatt tgagtttaat ggatgcttgt ataaaagcag ggattgatta tatagatacg
     4021 gcaaattatg aacatcctga tttagctaaa tttgaataca aagagcaatg ggcgagaaat
     4081 gataagttta aacaagcagg aattttagga cttttaggaa gtggatttga tcctggtgta
     4141 actaatgttt tttgtgctta tgcacagcaa aatttatttg atgaaatttc ttatatagat
     4201 attttagatt gcaatgcagg tgatcatggc tatgcttttg cgacgaattt taaccctgaa
     4261 atcaatctgc gtgaggtttc tgctaaaggg cgttattggg aaaatggcaa gtggatagaa
     4321 acgcagccta tggaaataaa aatggagtgg gattatccag aagtaggagt gaaagatagc
     4381 tatttgcttt atcatgaaga acttgaaagc ttggtaaaaa atatcaaagg tttaaaaaga
     4441 atacgctttt ttatgacttt tggacaaagt tatttaactc acatgaaatg tcttgaaaat
     4501 gttggaatgc tagggattaa acctgtgata caccaaggta aagaaatcat tcctatagaa
     4561 tttttaaaaa ccttgcttcc tgatcctgca agtttaggac cacgcactaa aggttatacc
     4621 aatataggtt gtgtgattcg tggtaaaaaa gatggaaaag acaaacaagt ttatatttat
     4681 aatgtttgca atcatgaaga atgttacaaa gaaactggcg cgcaagctgt gagctatact
     4741 acaggtgttc ctgctatgat aggtacgaaa ttaatcgcta aaggaatttg gcaaggaaaa
     4801 ggcgtgttta atatggaaga atttgacgct aagcctttta tggaagagct gaattctcaa
     4861 ggacttcctt ggaagattat cgaaatgact ccaagcttag gagagtaagt gctagagcac
     4921 ttacttttgt cctatataaa taaagtgctc cacactgcct tcaaaattat acagattaat
     4981 taattcataa tctccccaaa ataaaggttt aaaaggttta aaatcttctt ttaattcttc
     5041 tatgtcttta gtaaagcgta tatatgaaga accactcaat ctaccacttg gacatccttt
     5101 tacttcacgc aagctattat ccataagttc tcctctttca tacatactat agcctttatc
     5161 gctcatcatg gttgcaaata taatagctcc ttcattgcat agttcataaa attcttgcac
     5221 agcttcttta aaagcttgtt ttgtaagata atataagctt tgatttgcaa atataaaatc
     5281 catttttgta ttgaagagtt ttttaaagct agaattagga gatatgatgt gaaaattttt
     5341 agaatctaag caaggatctt tttcccaaac tttttttaaa ctaggaacta tatcaatgcc
     5401 ataaggctct ataccccccc cccggttata tttttaaaat acttagaatg cactccattt
     5461 ccacaaccaa aatcaagtaa ttttccactt gttttgctta gtttgtattt taagattctc
     5521 tcgtaaaatc ttataacatg accatcagga tattgaagtc cataaccttc tttgtcatat
     5581 ttttgagtat atgcagataa agaattatcc atttttgccc ctttttgtgt agaatgttga
     5641 cttaatgtca aaatccattc tagcacaaaa aggattaaag ttattttaca gggtgaagtt
     5701 catttgcata aaagctaact gatcccatgc cttcttttaa agcccattcg taagcttttg
     5761 caacaaattc ccagttaata tgagcataga atttttctaa ataagcaggg cgtgcattac
     5821 gatgatctac ataataagca tgttcccaaa catctacaac aagtaaagga actttatctt
     5881 cagtaattgg tgtagctgcg tttgaagtac ctacaaattc tagtttttga tttttagtat
     5941 tataaactaa ccaaaaccat cctgaaccaa aaactcctgt agcgcctttg ataaattcag
     6001 ctttgaaatt ttctaaagat ccaaattctt tttctagtgc cgcttgtaaa ttagcatcta
     6061 tactttgaca tgaaccgcca cagccacagc ctgtacttgg cttaatgcaa tcaaaataaa
     6121 aatcatgatt ataaacttga gctgcgttat taaatacgcc cccatttgaa gttttgataa
     6181 tacttacaag atctttacct gcaaattcag tatctttaat aagattattt agatttgtaa
     6241 cataagtatt gtgatgtttt ccatgatgat agctaaaagt ttcagcactc aaaaaatcac
     6301 caaaagcatt ggtatcataa ggtaattttc ttaattcaaa cataatttct cctttatttt
     6361 tagtttgata
//
LOCUS       DAQSLY010000091         6326 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.092, whole genome shotgun sequence.
ACCESSION   DAQSLY010000091 DAQSLY010000000
VERSION     DAQSLY010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6326
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.092"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..538
                     /locus_tag="R2H98_001382"
     CDS             <1..538
                     /locus_tag="R2H98_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEE9024248.1"
                     /translation="DLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEV
                     LPMYLSEQTRKNLEEKAKNSLVNFKGDDIGFVSRDSSRESVKVSDKILNDSEFAYFLM
                     NVFNTDQNSSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANELKQE
                     LVDELKKIYPIKIYYKGN"
     gene            535..1923
                     /gene="ftsA"
                     /locus_tag="R2H98_001383"
     CDS             535..1923
                     /gene="ftsA"
                     /locus_tag="R2H98_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEE9024249.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKFDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            1939..3051
                     /gene="ftsZ"
                     /locus_tag="R2H98_001384"
     CDS             1939..3051
                     /gene="ftsZ"
                     /locus_tag="R2H98_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEE9024250.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            3207..4019
                     /locus_tag="R2H98_001385"
     CDS             3207..4019
                     /locus_tag="R2H98_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEE9024251.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLAKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            4050..4841
                     /gene="flgG"
                     /locus_tag="R2H98_001386"
     CDS             4050..4841
                     /gene="flgG"
                     /locus_tag="R2H98_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEE9024252.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(4908..>6326)
                     /gene="glnA"
                     /locus_tag="R2H98_001387"
     CDS             complement(4908..>6326)
                     /gene="glnA"
                     /locus_tag="R2H98_001387"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEE9024253.1"
                     /translation="VNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAINEET
                     FQTGIPFDGSSIHGWQPIEKSDMILKPDVQSAFLDPFTADPTIIVFCDVYDIYKGQMY
                     EKCPRSIAKKAMEYLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTEEGEW
                     NDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHEVAQ
                     GQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVHMSL
                     WKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEAPCI
                     LTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKTIPV
                     GPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQHLKF
                     ETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2214 a          891 c         1201 g         2020 t
ORIGIN      
        1 tgatcttttg agtaaagcta aaaatggaga tgttttacgg ccagcacctt ataataacgg
       61 atatatcata gttaaactaa ataaagtaga tcctataaga aataaaactt ttgaagaagc
      121 tagagaagaa gttttaccta tgtatttaag cgaacaaact agaaaaaatt tagaagaaaa
      181 agctaaaaat agtttagtaa attttaaagg cgatgatata ggctttgtaa gtcgagatag
      241 ttctcgcgag agtgtaaagg ttagcgataa aatattaaac gattctgaat ttgcttattt
      301 tttaatgaat gtatttaata ctgatcaaaa tagttcttat gtggtcatta atgacaataa
      361 agcaatatta tataaaataa ataaacaaaa attagatatg aactccgata aatttgaaca
      421 atacaaaact atgcttgaac aaaatttgca aaatttaaaa gcaaatgagc ttaagcaaga
      481 acttgttgat gaacttaaaa agatatatcc gataaaaatt tattataaag ggaattgatt
      541 ttgaatatat taggaattga cttaggctca acccagactt gtgccattat tgctcaaaaa
      601 gatgaagatg gattaaaaat tattggtttt tccaagtcga aaaccaacgg ggttaaaaaa
      661 ggtgccatta ccaatataga gcttgcttct aaatctattg aagaggctgt tagaagtgct
      721 gagatgatga gcggagttca ttatgatagg gttgtggtgt ctatatcagg tgcttatact
      781 aaaagcgttg atagcatagg tgttgttaat attccaaatc atgaaatagg cattaaagaa
      841 attcatcgtg ctgtaagtac agctaagcat actgccaatc taccaagtgg ttatgaaatt
      901 atccatgttt tgccttataa ttttaaggtt aatgatcttg aacatgttga tgatcctttg
      961 ggaatgagtg gcaatcgttt ggaagtttca acccatatag tgatttcaca agaatctcat
     1021 attaaaaatc ttaagaaagc agttgaatta gctgatttaa gagtggataa tatagttctt
     1081 tcaggatatg cttcagctat agcttgttta gatgatagtg aaaaggaatt aggtgctgtt
     1141 ttgattgata tgggtggagc gatttgtgat atggttgttc atactggaaa ttcaattaga
     1201 tataatgact gtttgcaaat tggctcgatt aatattaccc aagatttatc aatggcattg
     1261 catacacctt taaaagaagc agaaaaaatc aagcttaatt atgcagctct ttcgcaacag
     1321 cctaataccc ttatacaaat tccttcaatg ggtgatgaaa gaaaggttaa tgaagtttct
     1381 ttggatatta tttcaaacgt aatttatgca agagcagaag aaactttgat gattttggca
     1441 aaaatcttaa gtgataatcg ttatgccaat gctataggcg gtggagttgt tttaacaggt
     1501 ggaatgacta agttagcagg tattgatgag ctagctcctg caacatttga taatcgctca
     1561 gttagactgg ctactgcaag aaaagatttg attactggtt ttagtgaaat ttttaatgat
     1621 cctgaaaata cttgtgctat aggactttgt ttatatggag cggggtattt tacgccttat
     1681 gaacttgatt ctaatgaaaa attaagatat aaaggggaaa ttgaaaattt taatcgtcaa
     1741 attaaacaag atattgtttt gcaaaaagat gcagaaagtg aaataaaatt tgattttttt
     1801 gatgaaaatt tgcaagaaaa tgatacaatt gcaatacaag aacaattaga ttttaaagag
     1861 ccaaaagaaa aaaaacctag cgttttttca aatatctggc ataaaattat gaatcaattt
     1921 taacaaggag aaatttttat gagtgaattt ttagtagaag aaatgcaaca taataaaggt
     1981 gcaaaaatta aggttatagg ctgcggtggc ggtggcggta atatgatcaa ccatatggtt
     2041 aaaatgggat taaatgatct tgatttaatt gcagcaaata ctgatgcaca agctatttca
     2101 atttcattag caaaaactaa aattcaactt ggcgagaaaa aaactaaagg tttaggcgct
     2161 ggtatgcttc ctgaagtagg tgcagaaagt gctagagaaa gttttgaaga aataaaagca
     2221 agtcttagtc aaagtgatat tgtatttatt gcttcaggtt ttggtggagg tactggaacg
     2281 ggtgccactc cagttattgc acaagcagct aaagagattg gagctttaac tgtttctgtt
     2341 gtaactatgc cttttgcatt cgaaggaaaa caaagaaaaa aacttgctga aagcggtctc
     2401 cttgagctta aaaaagaaag tgattctatt cttgtaattc aaaatgaaaa attattgagc
     2461 attattgata aaaaagcagg cattaaagat gcttttagat tggttgatga tattttagct
     2521 cgtgctgtaa aaggtatggt gtctatcttg cttgataatg gagatattaa tgttgacttt
     2581 gcggatgtaa gaaccatcat gagtcatcgc ggactcgcgc ttatgggtgt tggtagtgct
     2641 agtggtgaaa atgctataga agaggctctt tcaaacgcta tagaatctcc tttgcttgat
     2701 ggaatggata ttaaaggtgc taagggagtt attttgcatt ttaaaacaag ttctaattgc
     2761 tctttgtttg aaatttcggc agcagcaaat agtatacaag aaattgttga tgaaaatgct
     2821 aagattattt ttggttctac cacagatgat agcatggaag atagagttga agtaactatt
     2881 attgcgacag ggtttgaaga taaagataca gtagctaaaa aatctaccga agaagctcaa
     2941 gcttctaaga aaaatcctta tttaagtctt aaaaaggtaa gcggtggtta cgatgaagag
     3001 ataatggcgc aaattgaaac accaactttc ttgcgtcgtc aaatggatta aaattgattt
     3061 ttaaagcaag attgggtcaa atcttgcttt ttatagttta aaattctctc ctaataatct
     3121 ttcaaatatt tatttttctt tgtttttaaa agttggaaca ctctttgctt ttatagctat
     3181 aaaatcttaa ttttataggt gaaaatatgc aaaatggata ttatcaagca actggcggaa
     3241 tggtaactca gtttaataaa cttgatgtga ttactaataa tcttgccaat attaatacaa
     3301 gtggatacaa aagagatgat gtggttattg cagattttaa aaggattttt aaagaaactc
     3361 aggatgagtt gcctatagaa aatcacacaa gagatgcatc tcgttttgta aatactacaa
     3421 tagatggaat cccacaagtt tctcaagaat atacggattt tagcctaggt tctttaaagg
     3481 ccacaaacaa tcctttggat ttggcaatga ctagagaaga tgctttttat ttggttcaaa
     3541 ccaaagatgg agaagtaaga ttagccaaag atggaaattt tcaacttgat gatgagggtt
     3601 atttggtaaa taagcaagga tacaaggtat taagtagtga ttattttaat aatcctcaga
     3661 atgctggcat acgcattcct aatggtgctg ttcaaattag cgttgataaa aacggaagca
     3721 ttgaagttga tggagctcaa aatgcaagat tatttgtagc acaagtagat gatataagag
     3781 ctttgcaaaa agatggggat aatgtctata aaatagatga tctaacccgt attagagatt
     3841 tgaaaaactc caatgctatt cgccaaggtt tttctcaggg atcaaatgtt aatccagtta
     3901 ctgaaatggt aggactgatt gaagcaaaca gaatggtaga aatgtatcaa aaagttatga
     3961 cagctcatat ggatgactta aatcaagaag ctatcaataa gcttgcagct gttaaataat
     4021 ttaaaataaa ataaaaaaaa ggattaaaaa tgatgagatc acttcatact gctgctacgg
     4081 gaatggtagc gcagcaaaca caaattgatg ttacttcaaa taacatcgcc aatgttaata
     4141 cagcaggttt taagaaaagt cgcgcagaat ttgctgatct tatgtatcaa gttatgaagt
     4201 atgcaggaac ttcaacttca gctactactc tttctccttc gggtatagaa gtgggtgtgg
     4261 gtgtgcgtcc aacagcggta actaaagttt ttactgaagg aaatttaaaa tcaacaagta
     4321 ctgatggtct tgatatggct attgcaggta atgggttttt tcaaatacaa cttcctgatg
     4381 gcactatagg atatactaga aatgggcaat ttacaaaaga taatgaaggt aatattgtaa
     4441 attcagatgg ttatagactt ttacctgaaa tgacaatacc tgaaggcgca acagcaatta
     4501 atgttgctac agatggaacc gtttctgtaa tgctaccagg ggagcaacaa gaaactcaaa
     4561 ttggccaagt ggagctagtt cagtttataa atccagcggg tcttcattct atgggtgata
     4621 atctttatct tgaaacagga gcaagtggtg cacctgttgc gggtatagca ggacaagatg
     4681 ggcttggaac aataagacat ggatttatag aacttagtaa tgttcagctt gttgaagaaa
     4741 tgacagatct tatcacagga caaagagctt atgaagcggg ttctaaggcc attacaacaa
     4801 gtgatgatat gctaggaatt gtaaatcagc ttaagcgata gttgatataa aataaataat
     4861 ttttaattct tttttgttta atggcgtgtt aaacgccatt aaatttttta gcaagagtag
     4921 caagttttaa attcataagc agttggacga gcttctactg gccaaacttg tgtttcaaat
     4981 tttaaatgct gatagtcatc gataaaaata tcgctcatta caggttttaa ataagaatta
     5041 tgtcggatta aagcttccaa acttcctctt agagtatgtg gtaattgctc tatccctttt
     5101 tcacgtattt catccaaagt aagatcaaat aaattttcat ccataggacc cacaggaatg
     5161 gttttatttt tgattccatc aagacctgcc attaaaagac taacaaaagc taaataagga
     5221 ttagcagtgc tatcagggaa gcgaatttct atacgagctg aatttttacc tatgccataa
     5281 ggaacgcgac aacttgctga tctgttttga caagaataag ttaaaataca aggagcttca
     5341 aagccaggaa ctattctttt ataagagttg gaacttggat ttgtaaaagc tgcgacactt
     5401 ctagcatttt ttaaaattcc acctatataa tttatagcag tttgactaag tccactgtat
     5461 ccatctttat cgtaaaataa atttacccca tctttccata agctcatatg aacatgcata
     5521 ccattgccat tatctccgta taaaggtttt ggcataaaag tggcagtttt accatttaaa
     5581 tgagctacca tttttacaac atatttataa atttgaacat tgtcagctgc ttctacaagc
     5641 gtgccaaaat ttactcctat ttcagcttgt ccttgtgcaa cttcatgatg atgaacaaaa
     5701 gttttaagac ctactttttc aagggtttga accatttcag aacgaatatc tactaaagaa
     5761 tcaattggct gaactggaaa atatccacct ttgtttcttg gcctgtgtcc agtattgtag
     5821 ctatcggtaa attctctatc atcattccac tctccttctt cggtatcaac ttcatactta
     5881 gaacaatgag tagtatcaac tatttttaca ctatcaaaaa caaagaattc attttctggt
     5941 ccaaagtaag cagtatcagc tatgccacta tttttaaggt attccattgc tttttttgct
     6001 atgcttcttg gacatttttc atacatttgt cctttgtaaa tatcatatac atcacaaaac
     6061 actatgatag taggatcagc cgtaaaagga tctaaaaaag cactttgtac atcaggtttt
     6121 aaaatcatat ctgatttttc tataggttgc catccatgga ttgagcttcc atcaaatgga
     6181 ataccagttt gaaatgtttc ttcattgatt gcatgaagat tataggtaat atgatgccaa
     6241 gttcctatca tatctgtaaa acgaaaatca acaaaaagca cttcattttg tttgcaaaat
     6301 ttgaaaaaat catctatatt attaac
//
LOCUS       DAQSLY010000092         6201 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.093, whole genome shotgun sequence.
ACCESSION   DAQSLY010000092 DAQSLY010000000
VERSION     DAQSLY010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6201)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6201)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6201
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.093"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            44..403
                     /locus_tag="R2H98_001388"
     CDS             44..403
                     /locus_tag="R2H98_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEE9024254.1"
                     /translation="MDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKN
                     YYFSHSQKEEKNGLSKVEIKGRLNETSFIHFIDKVEDLENLFQPFETLFLGDYDPINF
                     YNFEGSAHHYVYIGIKK"
     gene            443..1447
                     /gene="legI"
                     /locus_tag="R2H98_001389"
     CDS             443..1447
                     /gene="legI"
                     /locus_tag="R2H98_001389"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEE9024255.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDIKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNMLCK
                     NGAKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            1440..2594
                     /gene="legG"
                     /locus_tag="R2H98_001390"
     CDS             1440..2594
                     /gene="legG"
                     /locus_tag="R2H98_001390"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEE9024256.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNINFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQDYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIINCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNVNLDTILHKNFIDL"
     gene            2603..3628
                     /locus_tag="R2H98_001391"
     CDS             2603..3628
                     /locus_tag="R2H98_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEE9024257.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKTNPNSIVIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            3625..4530
                     /gene="ptmF"
                     /locus_tag="R2H98_001392"
     CDS             3625..4530
                     /gene="ptmF"
                     /locus_tag="R2H98_001392"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEE9024258.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFKKSQNFTSSKNH
                     IYVAYLLRFHPVIVALKRLLKGEKIYFASLICNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     SKFNKREIIIHTLEKSFKADLINNNIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLEICDEVRKKNG"
     gene            4523..5230
                     /gene="legF"
                     /locus_tag="R2H98_001393"
                     /gene_synonym="ptmB"
     CDS             4523..5230
                     /gene="legF"
                     /locus_tag="R2H98_001393"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEE9024259.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRTAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            5230..6000
                     /gene="ptmA"
                     /locus_tag="R2H98_001394"
     CDS             5230..6000
                     /gene="ptmA"
                     /locus_tag="R2H98_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEE9024260.1"
                     /translation="MLENKIIFVAGACGRIGKALCQKILLSKGIPILADINKECLNKL
                     QENLEINFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDICGTLVFLLSDESKFITGQTLVVDDGWGL"
     gene            6000..>6201
                     /locus_tag="R2H98_001395"
     CDS             6000..>6201
                     /locus_tag="R2H98_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024261.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSDNTFLYENVIDELNT"
BASE COUNT         2416 a          949 c          992 g         1844 t
ORIGIN      
        1 tatagaacca aattctagca tcaaaggact ttttgatgaa aatatggata ttatctttgc
       61 aaatcaaagt ctttactaca tacctctaaa agaacttaaa caaaatattt tagaatttta
      121 cgaactttta aacacaggtg gaatactttt tgctacaatg atgagcaaga aaaattatta
      181 tttctcccac agccaaaaag aagaaaaaaa tggcttgagt aaagttgaaa tcaaaggtag
      241 actaaacgaa acgagtttta tacatttcat cgataaagtc gaagatctag aaaatctttt
      301 tcaacctttt gaaactttat ttctaggaga ttatgatcct attaattttt ataattttga
      361 aggatcagca caccattatg tttatatagg tattaaaaaa taaaattttg cctttatttt
      421 aaggcaaaat aaaggcaaaa ctatgaaaaa aaccctcatc atcgcagaag caggagttaa
      481 tcacaatggt gatttaaatt tagctaaaaa gttaatagaa atcgcagcag attcaggcgc
      541 tgattttgtt aaatttcaaa gttttaaagc caaaaactgt atcagcacaa aggctaaaaa
      601 agcaccctat cagcttaaaa ccacagctag tgatgagagt cagcttcaaa tggtacaaaa
      661 actcgaactc gatattaaag ctcataaaga gcttatctta cacgcaaaaa aatgcaatat
      721 tgcctttctt tctactcctt ttgatcttga aagtgtagat cttttaaatg agttaggctt
      781 aaaaatcttt aaaattccaa gcggagaaat caccaatcta ccctatctta aaaaaattgc
      841 aaagcttaat aaaaaaatca tactttcaac aggtatggca aatttaggcg agatagaaga
      901 agctttaaat atgctttgta aaaatggcgc taaacgccaa aatatcactc ttttacactg
      961 cactacagaa taccctgccc cttttgatga agtcaatctt aaagccatgc aaagcttaaa
     1021 agacgctttt aagcttgatg tgggttattc tgatcacaca agaggcatac acatttccct
     1081 agctgcagtt gccttaggag cttgcgtgat agaaaagcat tttactctag acaaaaatat
     1141 gtcagggcct gatcataaag caagcctaga acctcaagaa ctaaaaatgc tttgcaccca
     1201 aataagacaa atacaaaagg caatgggtga tggcataaaa aaagcaagta aaagcgaaca
     1261 aaaaaatatc aacatagtaa gaaaaagttt agtggccaaa aaagatatac aaaaaggaga
     1321 aatttttaac gaagaaaatc ttactaccaa acgccccgca aatggtataa gtgctatgag
     1381 atatgaagag tttttgggta agattgctac taaaaactac aaagaagatg agcttatccg
     1441 tgagtaaaag aaaaatttgt atagtcagtg caacaagggc tgaatggtat cttttaagaa
     1501 atttatgtca tgaaattcaa aacgataaag atctaagcct tcaaatcatc gctacaggag
     1561 cgcatttaag ccctgagttt ggactcactt ataaagaaat agaaaaagaa tttaaaatca
     1621 ctaagaaaat tcctatccta cttgcaaatg atgataaaat aagcctttgc aaaagcatga
     1681 gtttagcttt tagtgctttt agcgatgctt ttgaagactt aaaacctgat atggtggtga
     1741 ttttaggcga tcgttatgaa atgcttagcg tagcaagtgt atgtcttttg atgcacatac
     1801 ctttagtgca tttatgtggc ggggagctta ctttaggggc tattgatgat agtataagac
     1861 acagcatttc aaaaatgtca catttacatt ttgtaagtca tgaaatttat aaaaaaaggc
     1921 ttttgcaact tggagaagaa gaaaaaaggg tttttaatat aggttcttta gcttctacta
     1981 tcataaaaaa tataaatttt ttaaacaaaa aagatttaga aaaagcctta gaaatgaaac
     2041 tagataaaga actttactta atcacttatc atcctttaac cttaaatgta aaaaatactc
     2101 aaaaagagat taaaacctta cttaaaaaac ttgacaccct taaaaatgca agtttgattt
     2161 ttaccaaagc aaatgccgat gaaaatggac ttttaatcaa tgaaatttta caagattatt
     2221 gccaaaaaaa ctcacacaag gctaaacttt ttgataatct tggctcacaa aaatacctaa
     2281 gtcttatgaa aatagccaaa gccatgatag gcaattcttc aagtggtatt agtgaaagtc
     2341 ctttttttaa aactccttgc attaatatag gcgatagaca aaaagggcgt ttaagaactc
     2401 aaaatatcat taattgcgaa atcaacgatc ttgatcaagc ttttgaaaaa ttagaaagca
     2461 aagaatttaa acaaaattta aaaaatttta aaaaccctta tgataatgat aaaaatccca
     2521 ataaattcat aaaaacttgc ctaaaaaatg taaatttaga tacaatttta cataaaaatt
     2581 tcatcgattt ataaggctta gtgtggatat aaacaaactc aaactcaccc ctgattctag
     2641 cataaaagaa gctttaaaaa tagtcgggca agaacgcgtt agactaggca ttatagtgga
     2701 taaaaaggat aaatttttag gagtcattag cgattcaaac atcagaaaag ctttaattag
     2761 tggcaaaact ttaaaagata gtatcaagga tatttacact aaaaatccca tcaccataaa
     2821 agaaaacaca agcaaagaac agcttttaaa aatttctgct aaaaccgata tttatgattt
     2881 tcctgtttta gatgaaaaag ggcaaattct ttccataaaa tctgtctcat cgcttttaaa
     2941 aaccaatcca aactccattg tcatcatggc tggaggctta ggatctcgct taaaagagct
     3001 gactaaagat actccaaaac ctatgttaaa agtaggcaaa aaacccattt tagaaagcat
     3061 aatccaaaga cttaaaaatc aaaattttga aaattttatc ttttgtgtga attataaaaa
     3121 acaaatcata gaagattatt ttcaaaaagg gcaaaaattt ggggttaaaa tttcttatat
     3181 taaagagcgt aaaaaactag gtacagcagg ggctttaagc cttataaaac aagaatttaa
     3241 agaaagtttt atcgttatga atgcagacat tttaaccgag cttgatttta atgatctttt
     3301 aaaagcgcat aaaaaatcaa aagctttaat gagcgtttgt gtgcgtgagt ttgagcaaca
     3361 aattccttat ggagtgatca ctcaaaaaca aggttttata gaaaatatag aagaaaaacc
     3421 tacccaaaaa ttcctagtaa gtgcggggat ttatgtactt gaaaatgaaa ttttaaattt
     3481 aattgctaaa aatgaatacc tagatatgcc agaactcatc aaactcgctc tacaaaaagg
     3541 taaggtaaat acctatatca tcaatgatta ttggatcgac attggaaggc cagatgagtt
     3601 tttaaaagcc aatgaggatt ttaaatgaaa gtcttaatca taggctttgg aagcatagga
     3661 aaaaagcatt ttttagcctt aaaaaattta aagtatgaag taagtttgct ttctttaagt
     3721 gctaaaaaag aagaatttaa aaacactcca atttatcgct ctttgaaaga atgtgattta
     3781 aacgaatttg atctttttat catcgcaaat atcaccacag agcattttaa caccttaaaa
     3841 actttagatg agcttgtaaa agataaaacc atactcgtag aaaaaccttt atttaaaaaa
     3901 agccaaaatt tcacaagttc aaaaaatcac atttatgtag catatttact gcgttttcat
     3961 cctgtgattg tcgctttaaa aaggctttta aaaggtgaaa aaatttattt tgctagtttg
     4021 atttgtaatt cttatttgcc ccattggaga gctttagact acaggcaaaa ttacagcgct
     4081 aaaaaagagc taggtggtgg ggttttactc gatctctctc atgaaatcga tctagccttt
     4141 tttcttttta aagacttaga acttatatac tcccaaaatg ctaaaatttc agagcttgac
     4201 ataacaagcg atgattttgc ctttttggct ttaaaaaatt cacaagaagc taaaattcat
     4261 atagaactag actatttttc taaatttaac aaaagagaaa ttatcatcca tactttagaa
     4321 aaaagcttta aagccgattt gataaacaat aacatcgaaa tttatcacaa aaatcaaagt
     4381 caaaaaatct taaattttga aaatgatacg ataaaaaccc ttcaaaattt acatcatgca
     4441 gtctttgaaa aagacaaaga actttgcgat cttaagcagg ctttaaaagt gcttgaaatt
     4501 tgtgatgaag taaggaaaaa aaatggctga aattttatgt actatttgtg ctaggggtgg
     4561 tagcaaaggc gttaaaaaca aaaatattag aaagattaac gaacttgaaa tgatagctta
     4621 tagcatcata caagctcaaa attcaaagct ttttaaacac atagtcataa gtactgatag
     4681 tgatgaaatc gcaagtgtag cccaaaaata tggcgctgaa gtttttttca aaagagaagc
     4741 tcatcttgcc aatgatcgga ctgcaaaact tcctgtcatg cgtgatgcct tgctaagaag
     4801 tgaagagcat tttaaaacgt gttttgaaac tctcatagac ttagatgctt cagccccgct
     4861 tcgctcaagc cttgatataa aaaaagctta tgaaagtttt gttgaaaatg ataattccaa
     4921 tctcatcacc gcagttcctg ctagacgcaa tccttatttt aacctcgtag aaatacaaaa
     4981 taacaaggta gtaaaatcca aagaaggaaa ttttaccact cgccaaagtg ccccaaaatg
     5041 ctatgatatg aacgctagta tttatatctt taaaagggat tatcttttag aaaatgatag
     5101 tgtttttggc aaaaacacag ggctttttgt aatggatgaa agcacagctt ttgatattga
     5161 tagcgagctt gattttaaaa tcgtagagtt tttaatctct ttaaaaaatt tatcgccaaa
     5221 ggatttttaa tgcttgaaaa taaaatcatc tttgtagcag gagcttgtgg gcgtataggt
     5281 aaagcgcttt gtcaaaaaat acttcttagc aaaggtatcc ctatactcgc agatatcaac
     5341 aaagaatgct taaataaatt gcaagaaaat ttagaaataa attttaaaac aaagctttta
     5401 agcttagaac ttgatatcac taaacaagaa agcttacaaa ccgcccttca aaaaagtcaa
     5461 gaaagatacg gcaaaatcga tgcttttgtt aactcaagct atccttttgg caaagattgg
     5521 ggtaaaacgc cttattatga actcaaatac gaacaaattt gcgaaagttt aaatttacat
     5581 ttagcaggct ttatgctagc cgctcaagaa tttgtgaaat tttttaaaca acaaggctat
     5641 ggtaatatca tcaatcttag ctccatcatg ggagtttatg cgccaaaatt tgaaaactat
     5701 gaaggcactt ccatgcaaag ctctttagaa tacagtgtga taaaagcagg gattaatcac
     5761 atgagctctt ggctagctaa agagcttttt aatcaaaaca tacgcgttaa tactctagca
     5821 agcgggggaa ttttagacaa tcaaaacgaa ctttttttaa aagcttatag aaaatgttgt
     5881 gcgagtaaag gcatgttaga tgcagatgat atatgtggaa ctttggtgtt tttacttagc
     5941 gatgagagta aatttatcac agggcaaacc ttagtagtag atgatggatg gggcttatga
     6001 tgaccttcac ccctacccaa aaagaactct ttaacaaaaa cattgaggct ttaagtaata
     6061 ttcttttaaa agaaagttta aaagaaatca agtctagtaa atttgaactt atcttaggta
     6121 aagataatct agatatcaat ctaaaagata caagtgataa tacttttctt tatgaaaatg
     6181 ttattgatga attaaacact a
//
LOCUS       DAQSLY010000093         6198 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.094, whole genome shotgun sequence.
ACCESSION   DAQSLY010000093 DAQSLY010000000
VERSION     DAQSLY010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.094"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            17..721
                     /locus_tag="R2H98_001396"
     CDS             17..721
                     /locus_tag="R2H98_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEE9024262.1"
                     /translation="MRIFLALFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMYESAKGMSKDLNQAYKFYDKACKLGLASACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGESCYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            857..1585
                     /locus_tag="R2H98_001397"
     CDS             857..1585
                     /locus_tag="R2H98_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEE9024263.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMSLADMES"
     gene            1587..3308
                     /locus_tag="R2H98_001398"
     CDS             1587..3308
                     /locus_tag="R2H98_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEE9024264.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     ESNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGRGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            3514..4209
                     /locus_tag="R2H98_001399"
     CDS             3514..4209
                     /locus_tag="R2H98_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024265.1"
                     /translation="MVNFDTQYTNINYPNNNTSNKKAVLKNDDDAYYESIIKKFGDLE
                     KFKEENGYNGSPDVKEVENSLYKRYMEDRLSKDEIKILNKFGTDYLTEGVDLSALHKR
                     KVDLLKTLTSMNEFEKIWGAERAQREKQFFNELGKPLTQEDIDRFLTNKNNQKEDKEA
                     FKPIQAESKNKETYKDDNTRNELVKKLLEGKFSTSKELEILFGVKFSDDDAGEFNKIL
                     SLNSAPKSIDIKA"
     gene            complement(4315..5019)
                     /locus_tag="R2H98_001400"
     CDS             complement(4315..5019)
                     /locus_tag="R2H98_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024266.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANAAKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNFVART
                     YQQNSQNNDIKFNIAS"
     gene            5127..5489
                     /locus_tag="R2H98_001401"
     CDS             5127..5489
                     /locus_tag="R2H98_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEE9024267.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            5563..6135
                     /locus_tag="R2H98_001402"
     CDS             5563..6135
                     /locus_tag="R2H98_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEE9024268.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
BASE COUNT         2181 a          805 c         1135 g         2077 t
ORIGIN      
        1 gtataaagga agattaatga gaatattttt agctttattt ttatttttta attcattact
       61 tgcattaagt gaattagaag aaggtttaaa actttatgaa gcaaataaat ttgataaagc
      121 ttatgaaatt tttaaaagcc tttgtgaaaa agatatttct aaagcttgtt tttctttagc
      181 ttttatgtac gaaagtgcta agggtatgag taaggattta aatcaagctt ataaatttta
      241 tgataaagct tgtaaattgg gtttagcaag tgcgtgttct aatatggctt tgcttttgca
      301 aaatcaaggt tataaaaatg aagctctttt ggcttttaat aaagcttgta ctttaggaga
      361 atcgttaagt tgtaataata tagctttatt ttatgaaaaa gaaaaagatg gacaaatggc
      421 ctcaagtttt tataaaagat cttgtgattt aaaaaatgca agagcttgtt atcaattagg
      481 gtctttatat gataaaggag agcttgttaa agcaagtgta aaatctgccc ttgcttttta
      541 ttctaaatct tgcactttag gttttggtga gtcttgttat ttgttaggac gctataatca
      601 actagaaaaa caagatttaa caaaggcaaa aagatatttt ggtatggctt gtgatcaaaa
      661 acatcaagaa gcttgtgcag cttataaaga acttaattct aaagatatag agctttatta
      721 aaagttctat tttcattact ttcaaagata ttcttaaata aaattaagaa taacacaaaa
      781 tttatcgctt tttaaagtta aatttatatt aatagggcta atatagtctt gtttaaatta
      841 ttatcaagga gaagtaatgc aagacaatat tattgatcgc agaagctttt ttaaactagg
      901 gcttttaggt ggttctgtag tagcagctag tactataggt ggcggtgctg ttttaaaggc
      961 agcagaactt acgcattcgc atcaagcttc acaaggaaaa tcaaataaag ttagaggtag
     1021 aatgtttttt caaactcaaa ctgaatttga taccttaagt gcagcctgtg aaagaattta
     1081 tcctaaagat gagcaaggag aaggagctat aggtttaggc gtaccttatt ttatcgataa
     1141 tcagctagct agtgcttatg gttataatga tagagaatat atgcaaggac ctttcattga
     1201 gggtaaagct gaacaaggct atcaaactcc tatgcaacgc aaagatattt ttttagaagg
     1261 tgtgcatgct cttgaagaaa atgctcaaaa gcgttataaa aaatcttttt ctctgcttaa
     1321 aggtggagat caggataaaa ttctaagcga ttttgaaaaa ggaaaaattc aaactacggg
     1381 ttttaaatct tcttattttt tcactctttt aagagatatg acagtagctg gagttttagc
     1441 tgatccaatt tatggcggaa atgataataa aaatggttgg agaatgatgc aatatccagg
     1501 cgcacaaatg agctatgtgg ataaaattgc aagtgatgaa ttttttaaca ttgaacctat
     1561 gagtttagca gatatggaga gttaaaatgg ctgaagtatt aaaaaaagta gatgtggtaa
     1621 cagttggggc aggatggact ggaggtatag tggctgcaga gcttactaaa gcaggtttga
     1681 atgtacttag tttagaacgc ggacatatgc aaagtactga aaattttaat tttatccatg
     1741 atgagtggag atacgggatt aattatggtt tgatgcaaga ttgctcgaaa gacactgtga
     1801 cttttcgcca tgatcctagt ggtttagcct tgccttatcg taaaatgggt tcgtttttat
     1861 tgggtaataa tgttggcggt gcaggggtgc attggaatgg ttggactttt aggtttatgc
     1921 cttatgattt tgaaattcaa accctaagca aacaaagata tggtaataaa ttaggtaatg
     1981 attatacctt gcaagattgg ggtgtgactt ataaggatat ggagccttat tatgatagat
     2041 ttgaaaaaac ctgtggggta tcaggtgagt caaatccttt agcggaaaaa atgggagctt
     2101 ttagatccag tccttatcca caagaacctc ttgaaaatac taaaatgctt aaacgatttg
     2161 aaagtgcagc aaaaagttca aatttacaca cttatcgttt gccagcttca aattctaaag
     2221 gtggctatac aaaccctgat ggtcaagatt tagctccttg tcaatactgt gcgtattgtg
     2281 agcgttttgg ttgtgagtat ggcgcaaaag caagtccttt aaacacagta attccaaagg
     2341 ctatgagcac aggtaaatac actatacgca cttatagcaa tgtaacgcaa attcttaaaa
     2401 aagacggaaa agtaacgggg gtaaaatttg tcgatactag aacgatgaaa gagtatattc
     2461 aacctgctga tatagttgtg cttacaagtt atatgtttaa caatgctaag cttttaatgg
     2521 taagcaacat aggtgagcaa tacgatccaa aaacaggtag aggaacttta ggtagaaatt
     2581 attgttatca aatgaacatg ggtacaacag ctttctttga tgagcaattt aacaccttca
     2641 tgggttcagg tgctttggga actacgagtg atgattttaa cggagataat tttgatcatt
     2701 ctaaggaaaa attccttcat ggagctatga tttatagcgt tcagcttgga actcgcccta
     2761 tacaatcagc cccacttcca gcaggagctc caacttgggg tgctgaattt aaaaaagcat
     2821 taaactataa tttcacaaga gctattaccg tagcaggaca aggtgcttct ttgcctcata
     2881 agaataatta tttaagtctt gatccaactt ataaagatgc ttttggtatg ccacttttac
     2941 gcttaactta taatttcacc gatcaagata gagctttgca taaatttatc acagataaaa
     3001 cagctgaggt agcaaaaaga atgcaaggag taaaatcaat caaaaaaggt gcttatctta
     3061 aggattatag cgttgtgcct tatcaatcta ctcataacac aggtggaaca accatgggtg
     3121 cagatagaga aactagtgtg gttaatactt atttacaaca ctgggatgcg gataatcttt
     3181 ttgttgtagg agcaggaaat ttccaacaca atagtggata taatccaact gatactgtag
     3241 gagctttggc ttatcgctgt gctgaaggta ttttaaagta tcataaaagt ggaaaaagct
     3301 tagcttgata ataacttgag agtttttgaa aactctcaag attataaatt tttaattttc
     3361 ttccgatata gtataatatc aaggaaggca aaaatgatta atggtgtaaa ttcttattta
     3421 aactacaatt atacaaaaag gcaaatgtag tctgctcttg gtggttggaa tccaagatta
     3481 ttttaataaa atatcataaa aaaagggttt tctatggtaa attttgatac tcaatataca
     3541 aatatcaatt atccaaataa taacacaagc aataaaaaag ctgtgcttaa aaatgatgat
     3601 gatgcttatt atgaatccat aataaaaaaa tttggagatc ttgaaaaatt taaagaagaa
     3661 aatggctata atggatctcc tgatgtaaaa gaagtagaaa actctttata taaaagatat
     3721 atggaagata gactaagcaa ggatgaaata aaaatactta ataaatttgg cacagactat
     3781 cttacagaag gcgtagattt gtccgcactt cataaacgaa aagttgatct tttaaaaact
     3841 cttacaagta tgaatgaatt tgagaaaata tggggtgctg aaagggcaca aagagaaaaa
     3901 caattcttta atgaacttgg taagccactt actcaagaag atatagatag gttcttaact
     3961 aataaaaaca atcaaaaaga agacaaagaa gctttcaaac ctatacaagc agaaagtaaa
     4021 aacaaagaaa cttacaaaga tgataataca agaaacgagc ttgtaaaaaa actattagaa
     4081 ggtaaattta gcactagcaa agaattagaa attctttttg gtgtgaaatt tagtgatgat
     4141 gatgcaggag aatttaataa aattctttct ttaaattctg caccaaaaag tatagatata
     4201 aaagcttgaa aatgcaaaaa tttaaattat aaaaaagaaa aaatgttaaa tatcttaaca
     4261 tacaaattca agtcatcgtt tttataagga aattttttat ttaaattaag aattttaaga
     4321 tgcgatattg aatttaatgt cgttattttg tgagttttgt tgataagttc tagcaacaaa
     4381 atttttaaag tctttatcaa aatttgaatt tttatcgttg ttttttgaat ctttatctgt
     4441 tttttctaag ctattttctg aatttttgtc atctttttct ttattttctt cttctttttc
     4501 tttggcttct tcggctttaa gcttcattgc ttcagctctt gcttcaaatt ccatttttgc
     4561 agcatttgct gcaactttat agtcttgtgg gctaggatca gcaggagcca tagctgctgc
     4621 tgcgatttgt cttgcattgg ctatagtttc ttctggtgtg tttccttttt gcatgctgat
     4681 aggaacttca cccgctgtag catacatttg attatcaggg cctcttgtat aagtaaaact
     4741 tgcagcacct gctaagccgc cacccgctgc ttgatgcgca gcttcatgag cctttacatt
     4801 tctatcgata ctttggagtt cgcgaacttg agctacttct ttttggctta gctctacgcc
     4861 attaaccatt tgggtttgtt cgccattttt ttctttatca tctttatttt cactaagatt
     4921 tttttcatct ttttgagtgg aatcagattg atttgtttta tcaaaagaag gtttgctaga
     4981 gtagtaatca taagagttat aacttgaact aatttgcatt tatcctcctt tttgtttttt
     5041 aaatttttag gaattttaac gcattttgac ttaaaaattt gataaatttt gtaaaataat
     5101 cataaataca atttcaaagg aatgtaatga tttatgaaaa tgatttgatt tatatagaga
     5161 aagaggaggc tcaagtgcct tggcttaaaa tttttactaa agaaatttat aaagaattta
     5221 gcgattgtcc tttagagttg caaaaggaac tttttgaaaa aattttactt tgtgaaaagg
     5281 ctatgataga attttacaaa cctgaaaaaa tcaatatcgc ctcttttgca aattatgtgc
     5341 caagggtgca ttttcatgtt atggcaagat ttaaagaaga tgcgtttttt ccagagtgta
     5401 tgtggggaaa acagcaaaga gaaacaataa agcttgattt gcctaaattt gaagaatttg
     5461 taaaattttt aaatagtaaa attttttgat ttttattaat gatttgttat gttttatcta
     5521 ataaaatttt tatattgaaa attactataa aaaaggaaaa aaatgaaaaa agttttattg
     5581 agttcattgg ttgcggtgtc tttgttaagc acaggtttgt ttgctaaaga atatacttta
     5641 gataaagcac atacagatgt aggttttaaa atcaaacatt tacaaattag caatgtaaaa
     5701 ggaaatttca aagattattc tgcggtgatt gattttgatc ctgcgagtgc tgaatttaaa
     5761 aagcttgatg taactataaa aatcgcatct gtaaatacag aaaatcaaac aagagataat
     5821 cacttacaac aagatgattt tttcaaagca aaaaaatatc ctgatatgac ttttacaatg
     5881 aaaaaatatg aaaaaatcga taatgaaaaa ggcaaaatga caggaacttt aactatagct
     5941 ggagtttcta aagatatcgt tttagatgct gaaatcggcg gtgtagctaa aggcaaagat
     6001 ggaaaagaaa aaataggatt ttctttaaat ggaaaaatca aacgctctga ttttaaattt
     6061 gcaacaagta cttcaactat tactttaagt gatgatatta atttaaatat cgaagttgaa
     6121 gcgaacgaaa aataattttt tagtctaaga gtcttgctct tagactttgt aaatttttat
     6181 ccaaattttc ttcacttt
//
LOCUS       DAQSLY010000094         6186 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.095, whole genome shotgun sequence.
ACCESSION   DAQSLY010000094 DAQSLY010000000
VERSION     DAQSLY010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6186
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.095"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            295..2217
                     /locus_tag="R2H98_001403"
     CDS             295..2217
                     /locus_tag="R2H98_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEE9024269.1"
                     /translation="MIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQN
                     SDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAA
                     KRSLVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVG
                     FGKTEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSS
                     AEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNS
                     HILSMSATPIPRSLNQALSSIKSYSVLQIPPEDRMDVRTFVKENDDALLKEAIARELR
                     RGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKVQEEEMLKFENKEYDLL
                     LSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAIT
                     KDALKRLVSLESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGRIEQIGYSLYLKMLED
                     ELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVYEVYEIE
                     GEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSK
                     DDDDILEAILTHLRKA"
     gene            2219..2980
                     /locus_tag="R2H98_001404"
     CDS             2219..2980
                     /locus_tag="R2H98_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024270.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            2977..3663
                     /locus_tag="R2H98_001405"
     CDS             2977..3663
                     /locus_tag="R2H98_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEE9024271.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFYLGYEFEN
                     YEELREFFQSDIESEQENLYKILGKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            3660..4472
                     /gene="thiD"
                     /locus_tag="R2H98_001406"
     CDS             3660..4472
                     /gene="thiD"
                     /locus_tag="R2H98_001406"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEE9024272.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGIIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIIKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEANANDVLYNGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4462..5094
                     /gene="thiE"
                     /locus_tag="R2H98_001407"
     CDS             4462..5094
                     /gene="thiE"
                     /locus_tag="R2H98_001407"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEE9024273.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            5072..5701
                     /locus_tag="R2H98_001408"
     CDS             5072..5701
                     /locus_tag="R2H98_001408"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEE9024274.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICANQSLLDCVKLAKTLV"
     gene            complement(5698..6150)
                     /locus_tag="R2H98_001409"
     CDS             complement(5698..6150)
                     /locus_tag="R2H98_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024275.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
BASE COUNT         2265 a          708 c         1147 g         2066 t
ORIGIN      
        1 gatattaatg aatatgaaaa agatataagt tttgtgaatg caaaaatttt acctcaagct
       61 aaaaaattta aagaattgca aagttcttac aataaagatt tttttgaatt tcataaaaat
      121 aaaaaaatca cacttttagc taaaaacgaa gctttattta aagctttaga gcttgaagat
      181 actcaaaata tccattttgt aaaaagtgat ttaaggctta atcttattag tcctgaagag
      241 ctaattattt ctttaaatca aaaagaaaaa caaaaaacaa gaaaaaaagc tagtttgatt
      301 atagatgagc ttaaaaatgg ggattatata gtacacgaag attatggggt aggtaaattt
      361 ttaggtcttg agatgatagt gataagcgga gcaaaaaaag agtttgttgc tatagagtat
      421 caaaattctg ataagctttt attaccagtg gaaaatcttt atttgattga taaatatttg
      481 ggcgtgagtg gatctattcc aagcttagat aaactaggta aaacaagctt tattaaactt
      541 aaagaaaaat taaagactaa acttttagcc atagcttctg aaattgttat tatggcggct
      601 aaaagatctt tggtgcaagc aaaaaaaatt acagtggatt taaatagaca gactgatttt
      661 atagctagtg cgggttttat ttatacaagc gatcaagata aagcctgtca tgaaattttg
      721 caagattttc aaagtggaaa agtcatggat aggcttttaa gcggtgatgt gggttttgga
      781 aaaacagaag tcgctatgaa tgctatttat ccagtagtta aaagtggatt ttgcgcattt
      841 ttatttgcgc ctacgacttt gctttctcat cagcattata aaaccttaaa aaagcgtttt
      901 gatccttttg atataaaggt ttttaaactg gatcgcttta caagtagtgc agaaaaaaaa
      961 caagttttac aaaatttaaa agaaaataaa gcttgtgtag ttgtaggaac tcatgcactt
     1021 ttaagtgtag aatgtgaaaa tttagccctt gttattattg atgaagagca taaatttgga
     1081 gtgaagcaaa aagaaaagct taaagaaatc actcaaaatt cacatatttt atccatgtca
     1141 gcaaccccta taccaagaag cttaaatcaa gctttaagtt ctataaaatc ttatagtgtt
     1201 ttgcaaattc caccagaaga tagaatggat gtaagaactt ttgtcaaaga aaatgatgac
     1261 gcacttttaa aagaagctat agcaagagag ttaagacgtg gtgggcaaat tttttatatt
     1321 cataatcata ttgcaagtat agagcaatgc aaaaaacatt tattagaact tttttctact
     1381 ttgcgtattt tgattttaca ttctaaaatc gatgctaagg tacaagaaga agaaatgttg
     1441 aaatttgaaa acaaagaata tgatttgctt ttaagtacct ctatcgtaga aagtgggatt
     1501 gatttaccaa atgcaaatac tatcatagta gaaaaaagcg atcgttttgg catggctgat
     1561 ttgcatcaat tgcgtggacg tgtaggaaga agtgataagc aaggttattg ttatttttta
     1621 atcgaagata aaaatgctat cacaaaagat gctttaaagc gtctagtttc tttagaaagt
     1681 aattcttttt taggcgcagg ttctgttttg gcttatcatg atcttgaaat tcgtggcggt
     1741 ggaaatttat taggcgtgga tcaaagtgga cgtatcgagc aaattggata tagtttatat
     1801 cttaaaatgt tagaagatga acttaatgct ttaagtaaaa atgaagtgga tcaaaaagaa
     1861 aataaacttg atttaaaact caatgttaat gcctttttaa atagtgagct tatcagcgaa
     1921 gatcgcttaa gattagaact ttatagaaga cttagcaagt gtgagcaagt ttatgaggtt
     1981 tatgagattg aaggtgaaat tgaagatcgc tttggaaaac ttgacattta tactaagcaa
     2041 tttttatctt tgattactat taaaatttta gctttaaata aatttaaaag cattagtaac
     2101 tatgagcaaa atattcaatt tactgcttta aatgatgaaa aagaactcat caaggcaaaa
     2161 agcaaagatg atgatgatat tttagaggca attttaacgc atttaagaaa ggcttaaaat
     2221 ggattggaat aaaacttatg cagcaattta tagagcaaga aaagattatt taaagcctat
     2281 ttttgaaatc gatcctattg ctttaaaaga tttagtaggt atggaaagtc aaaaaaaagc
     2341 actttatgaa aatactttaa atttcattca agataaggga gcaaatcacg cacttttatg
     2401 gggatctaag ggcactggaa aatcaagttt aattaaagct atatttaatg aatttaaaga
     2461 acagggctta agacttgtcg aattaaataa agaagattta tttgccttag cagatatcat
     2521 cgatgaaatc agattagaaa attttaaatt catacttttt tgtgatgatt tttcttttga
     2581 aaagggagat gatagttata aatttttaaa acctttactt gagggaagca tagaaaaagc
     2641 cccaaataat gtaattattt atgcgagttc aaatcgtagg catttattaa gtgaaagcat
     2701 tactgataat cttgatacgc aaatcacaca tacagaactt catttaagcg atgctgctga
     2761 agaaagatta agtttgagtg atagatttgg tttgtggtta agtttttatc agggaaattt
     2821 agaagagtat ttaaagatga tagattttta ttttaaagat tattcttgtg ataaagagct
     2881 tttgcacgct aaagctaaag aatttgctac tctaagagca agtagaagtg gtcgtaccgc
     2941 aaagcaattt tatttagctt ttaaggagaa ttttaaatga ctggagcaca aatttttacc
     3001 aagcttttaa atttggattt aaattatcat gattttgatt ggcttgaaaa tcaaggattg
     3061 agtgaatttg agcttttaat ttctgtcgtt ttaactcaaa atacaaattg gaaaaatgtc
     3121 ttaaaagctt tagaaaattt aaaaaaagaa aatattgcaa gcttagaaca aatcaatact
     3181 ttatccaatt tagaacttgc aactttaatt aagcctagcg gattttataa taccaaaact
     3241 aagcgtttaa aaggtttggt agaaagtatc ataaacactt atgaaaattt agaaaatttt
     3301 aaaacaaatg caagcagaga atggctttta aatatcaaag gtttaggttt tgaaagcgtt
     3361 gatagtattt taaactatct ttgcaaaaga gagattttgg ttgtagataa ttatagtttg
     3421 cgtttggctt tttacttagg ttatgagttt gaaaattatg aagaattaag agaatttttt
     3481 caaagtgaca tagagagtga gcaagaaaat ttgtataaaa ttttaggaaa aaaatgcgaa
     3541 ctttacgaac tttatcaaat ttttcatgct ttgattgtag cttttgcaaa acagagtttt
     3601 aaaggacaaa aattaagccc taagggtgaa gaatggatca aaattttaaa ggaagattta
     3661 tgaaagcaaa aggaagtgaa cttatacctg ttttaactat agcagggagt gattgtagtg
     3721 gtggagcagg gatacaagcc gatcttaaaa cctttagtgc acacaatctt tttggtatga
     3781 gtgtggtttt aagtgtggta gctgaaaata ccgcaagggt gatttctgta cacgatatac
     3841 ctactcaaag cgtggatgaa caaatgcttg ccgtgtttga agatatagtg ccaaaggcaa
     3901 ctaaaatcgg aataataggt tcttgtgaat taatgagctg tgtagctaaa aatttaagcg
     3961 agtttaaacc tcaaaatgta gttattgatc ctgtaatgtt tgccaaaaat ggctatgctt
     4021 taatgccgca agaaaattgt gattttttca aacaaactat aataaaattt gcagacattc
     4081 ttactcctaa tattcctgaa gcagagtttt tatgtggttt taagatcgct aatgaagagc
     4141 agatgataaa agcagctaag catttatgca gcttgggggc taaggcagtt ttacttaaag
     4201 gcggacatag tgaagcaaat gccaatgatg tgctttataa tggaaaagaa atttatattt
     4261 taaaaggcga acgcatagaa actaaaaata ctcacggtac aggttgtacg ctttcttcgg
     4321 ctattgctag taatttagct aaaggcaagg atttatttca cgctgttagt gaagctaaag
     4381 agtatgtaag aaatgcgatt tattattcac ttaatcttgg aaaaggttgt ggtcctacaa
     4441 atcatttttt caagtttcta gatgaaaaat aaattagatc ttagccttta tttggttgct
     4501 actaagggaa ataaaagcga ggagtgtttt ttaaatactt tagaaaatgc tataaaaggc
     4561 ggagtaagta tcatacaact tcgtgaaaaa gagcttaatg caagagaatt ttataaacta
     4621 ggcttaaagg tgcaaaaact ttgcaagtct tataaaatac cttttttgat taacgatagg
     4681 gtggatatag ctttagcctt agatgctgat ggggtgcatt taggacagga agatttagaa
     4741 gcaaaattag ctagaaagct tttaggagat gaaaaaatca taggcttaag tcttaaaaag
     4801 ttagaacaac ttgagtttat acaaggagta aattatctag gttgtggagc tattaaggca
     4861 acgcctacta aagaaagttc gcttttaagc cttgagcttt taagtcaaat ttgtgataaa
     4921 agccctatag gggttgtagc cataggtggg attgacaaag aagcacttgt tgagttaaag
     4981 ggtataaatt taagcggtgt ggctgtggtt agggcgatca tggatgctaa agatgctttt
     5041 ttggcagcta aagagctaaa gcgtaaaatc tatgaaaatt tatctcttaa atgaaactcc
     5101 ttttgaaggg gtggaaaatc ttattttaaa tgagattgtt ttttatgatt ttagtgtgga
     5161 tttgagtttg tatgatgctt taatctgcac ttcaaaaaat gctttaaaag ctttacaaca
     5221 tgcaaaaatc actttaaatt tcaaactcaa tttatacgct gtgggacaaa gtacagctca
     5281 atacgctaaa aatttaggtt ttaaaaagat taaaattcca tcaaaggctt atggaaaaga
     5341 tctttttctt gaatttaaag aggagttaaa aatgcaaaaa tgtttgtatt taagggctaa
     5401 aaatattgtt tcaactttaa atttggatct taaaaatgta ggtgtggatt tagatgaaat
     5461 gattgtttat gaaaatgttt ttaaaaaagg cgacaaaaag cttatctatc ctgctatttt
     5521 tatattcacc tctcctttaa gtgtagaaaa ttttttaaaa ttttatagct taaaagaaga
     5581 agataaggtt gtagttatag ggcaaagcac agcaaagaag cttttaaatt ttaaaaatct
     5641 ttatatatgc gcaaatcaaa gtcttttaga ctgtgttaag ctcgctaaga ctttggttta
     5701 attttttaaa ttccaaaaat tttctttggg ataaataata atgctttttg tgagtaaaat
     5761 ttcatcattg acatttttat cacgatttaa agcaatgcta atgtgggcta taataacacc
     5821 atctttgctt aaatttgcat cgggattgaa gttggaaaat ttaaaattaa cacattgtgc
     5881 aataggataa aaatatttta ttttaatcaa agcttttgtg taattaaaat atatattgtc
     5941 taaacattct ttattttctt gctttgcttg atataaaaaa tatttagaaa attgcgttgc
     6001 attgtgactt aaaatttgag cttgaaggta gtaataacta tcttggatta tttttggagt
     6061 atagctggat atgtttaagg tcaagctcat ccatagactt attagtagta ttaaaaaaat
     6121 tgtccaaatt aaaacataag cttttttcac agtaaaattc ttttttcaag gcaatgtttt
     6181 gtttgt
//
LOCUS       DAQSLY010000095         6064 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.096, whole genome shotgun sequence.
ACCESSION   DAQSLY010000095 DAQSLY010000000
VERSION     DAQSLY010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6064
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.096"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            26..688
                     /gene="flgA"
                     /locus_tag="R2H98_001410"
     CDS             26..688
                     /gene="flgA"
                     /locus_tag="R2H98_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEE9024276.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKNVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            685..1248
                     /locus_tag="R2H98_001411"
     CDS             685..1248
                     /locus_tag="R2H98_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEE9024277.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKTE
                     NQANLEEICQENFKYTYFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            1288..1764
                     /gene="coaD"
                     /locus_tag="R2H98_001412"
     CDS             1288..1764
                     /gene="coaD"
                     /locus_tag="R2H98_001412"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEE9024278.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            1755..2333
                     /locus_tag="R2H98_001413"
     CDS             1755..2333
                     /locus_tag="R2H98_001413"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEE9024279.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            2330..3556
                     /locus_tag="R2H98_001414"
     CDS             2330..3556
                     /locus_tag="R2H98_001414"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEE9024280.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCLQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            3553..5388
                     /gene="speA"
                     /locus_tag="R2H98_001415"
     CDS             3553..5388
                     /gene="speA"
                     /locus_tag="R2H98_001415"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEE9024281.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            5389..6027
                     /gene="cysE"
                     /locus_tag="R2H98_001416"
     CDS             5389..6027
                     /gene="cysE"
                     /locus_tag="R2H98_001416"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEE9024282.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGMWAIVNYRFAH
                     FFYIRNFKRIARIISGISQFLTGVDLHPGAELGRRVFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQHESQK"
BASE COUNT         2263 a          854 c         1055 g         1892 t
ORIGIN      
        1 ttgcattata attcttagga taaaaatgaa aattattttt ttaacttttt ttattgtgat
       61 aaattatatc caagcagcta gtttagaaga aatcaaaaca gcactagcta aagaatttag
      121 aaataatttt cctaaaatta taatttctca aattgattta aaaataacat cattgcctaa
      181 agattttgat caatatgaat ttctaagaat cgctaatggg cgttttaatc aagcacaagg
      241 ctttttaagg gctgaattta aaactccgca aaatatacaa aaaaatgtat tttttagata
      301 tttcattcaa gcaaatttag aagttttaaa aagcgaacgc gctataaaaa gaggagataa
      361 acttggagct tttgactata aaaacgtatt gattgatttt gataaagttc ctttaaatgc
      421 cttaacctta gatgatgtag ataatcttgt agctaaaagc aatattaaca aaaacgccat
      481 tttaagagca aatatgttta aaaccacagc tttaatacgc cgaaatgatc ctataatcgg
      541 gattttaagc gaagcaaatg ttgatgtttt aatcgaactt gtggctttgc aaagtgcaaa
      601 tatgggcgaa aggattcgtg caaaaaacaa agaaggtaaa gttatgcaag gcatcgtagt
      661 gggtaaaaat aggatgatta tacaatgaag gttttattag gaatttctgg ttcaagcagt
      721 gtcaatttag gcttaaaatt attaaaaaat ctagaaaacc aatgcgaact ttattgcatt
      781 ttaacccaag gtgcaaaact tagcttcaaa actgaaaatc aagcaaattt agaagaaatt
      841 tgtcaagaaa attttaaata cacttatttt ttagatgata aaaatttaag tctaagtgta
      901 gcaagtggat cttttggaat agaaaaaacc atcattgctc cttgttcaat ttcaagttta
      961 gcaaaaattc acgctggttt tgcagacact cttttaatgc gtgctgcagc agtggcctta
     1021 aaagaaagaa aaaaacttat cttaggcgta cgcgaaatgc ctttttctac tttaaattta
     1081 gaacatatgt taaaacttag ccaaatggga gttattatcg cccctcctat tatcgcaagc
     1141 tattctaaag caaacaatct agagcaaatg gaaaatttta tcgcaggtaa atggttagat
     1201 cttttagaaa taaaacacaa tttatatgaa aaatggcaaa atttttagtt taaatttgtt
     1261 atatttttaa aaaaaattgg agcaaaaatg acttgtttat atcctgggac ttttgatcct
     1321 attaccaacg ggcatttaga tgttataaaa cgggctttaa aaatttttga tgaagtcatc
     1381 gttgccatag caaaaagtga acataaaaaa ccttgctatg atttagaaaa acgcaaagaa
     1441 ctagccctgc tcgcaacaca aaatttaaaa aatgttaaaa tcattgcttt tgataattta
     1501 cttgtagatt tagccaaaga attaaaagtt aatactataa tccgtggact tagagcagtg
     1561 agtgattttg aatacgaatt gcaaattggc tatgcaaatc acgcactttg ggaagatatg
     1621 gaaaccattt atcttatgcc aagtctaaaa catgctttta tttcaagttc tattgtgcgt
     1681 tctatagtag cacatggggg tgatgtaagt tctcttgttc caaaagaaat tctacctttt
     1741 ttaaaggatc aatcttgtat gtagtttttg aaggtattga ctgcgtagga aaaagtacgc
     1801 aaatttcact tttaaaagaa atttacaaag atgccatttt cacactcgaa cctggcggaa
     1861 cagaacttgg aaaacattta agagaaattt tacttaataa aactcatcct attaacaaaa
     1921 gagctgaact cttgcttttt ttagctgatc gtgctcaaca ttttgaagaa atcttaaaaa
     1981 ccaatcaaaa caaactcatt attagcgata gaagtttcat ttcaggcatg gcttatgcca
     2041 aagattttga aaacgatttg ctttttgctt taaatagttt tgctttagaa aatttttttc
     2101 cacaaaaaat tatcttttta aaaggagatg caaaccttat ccaagaacgc ctcagtcaaa
     2161 aagaactaga tagtatagaa aaacgtggca ttgagtattt tttaagtgta caggacaaac
     2221 tcgaaaaagt gcttcatttt ttaaaagaaa aaatttctgt agaaatttta acacttgacg
     2281 caaaagaaag taaagaaaaa ttacaccaac aaataaagga atttttacaa tgattaacgc
     2341 tttaaaagga atgaaagatt tattagataa agatgcatat tattatgaaa aagtgattaa
     2401 aacctgcgaa gaagtagcta aaaactatgg ctttactttt atcaatacac cgcatttaga
     2461 actttgcacc ctttttaaaa gaagcgtagg agaaagttct gatatagtag gtaaagaaat
     2521 gtatgaattt atcgataaag gcgaaaatca tgtttgcatg cgtcctgaag gaactgctgg
     2581 ggtggtgcgt gcctatatag aaaaaaaact cgataaaaac actagtgtga aaagatggtt
     2641 ttatcatggt tctatgtttc gttatgaaag acctcaaaag ggtcgcttaa gagaatttca
     2701 tcaatttgga gttgaaagcc ttggcatacc taatgtttat gaagatgcaa gcattatttt
     2761 aatgctagta gaaattttct cacgccttgg tattgatttt aaacttcaac ttaattcttt
     2821 aggctgctta caatgcttgc caaaataccg cgataggctc gttgaattct tagattccaa
     2881 agaaggtttt tgtgaagatt gtttgcgtag aaaaaattta aatcctattc gtgtcttaga
     2941 ttgtaaaaat gagcattgtc aaaatttgct tgaaaatgct ccgcttttga tcaataattt
     3001 atgcacctct tgccaaaaag actttgaaac actgcaacaa attttaaagg ataatggagt
     3061 taaatttgag ttagattcaa aacttgtgag gggtttggat tattattcta aaacggcttt
     3121 tgaatttata agcgatgaaa taggagcaaa ggctgctatc gcaggtggag gacgctacga
     3181 tagacttata gagtatttag gtggaaaaag tggctatggt ataggttttg ccatgggtat
     3241 agaaagaatt ataactattt tagaacaaaa agaagaaaag attcaaagag aaggaattta
     3301 tctttgtgct atggatgaaa tttatatcca aaaacttttg catatcgcta caaatttaag
     3361 aaaagaatat aaagtacttt taagctatga agcaagaaaa ctagccaaac atcttgaaaa
     3421 cgcggataaa aataatactg aaatttttct ttgcatggga gaaaatgaag cacaaaatga
     3481 aagtttgttt tataaaaatt tagcaaaaaa agaagaaaaa atgattaaaa tttcagactt
     3541 aaagaaggtt ttatgatgga ttatggtatt gatatttggg gaaatgaaaa tttcattatc
     3601 aaaaatggta aagtttgtat caattacgag aaaaaacctg ctattattga tatagttaaa
     3661 gaattaagag atgatggata caagggacct ttacttttaa gatttcctca tcttatccaa
     3721 aaacaaattg aaaatattta cggaaatttc aataaagcaa gaaaggaatt tggctataaa
     3781 ggaggattta acgctgttta tcctttaaag gtcaatcaat accctggttt tgtaaaaaat
     3841 cttgtaaaac ttggaaaaga ctataactat ggacttgaag caggttctaa ggcagagctt
     3901 ttactcgcta tggcttataa taacgaaggc gcacctatta ccgtaaatgg ctttaaagat
     3961 agagaactta tcaacatagg ctttatcgca gctgaaatgg gacataatat cactttaacc
     4021 atagaaggac ttaatgaact tgaagctatc atagacatag ctaaagaacg ctttaaacct
     4081 aaaccaaata taggcttacg tgtacgtttg cattctgctg gagttggaat ttgggcaaaa
     4141 agcggtggga ttaattctaa atttggactt acatccactg aactcataga agcggtaaat
     4201 ttactcaaag aaaacaaact tttagaacaa tttaccatga ttcactttca tctaggctca
     4261 caaattaccg aaattcaccc cttgaaaaaa gccttaaatg aagcaggaaa tatctataca
     4321 gaacttagaa aaatgggagc taaaaatcta aaagctatca atcttggtgg cggtttagct
     4381 gtggaatact cacaatttaa aaatgaaaaa agtagaaatt acaccctaag agaatacgct
     4441 aacgatgtag tttttatcct aaaaaacata gccgaacaaa aaaaagattt agagcctgat
     4501 attttcatag aaagtggacg ttttgtagca gctaatcacg ctgttttaat cgctcctgta
     4561 ttagaacttt tttctcaaga atacgcagaa aacaaactca tacttaaaaa acaaaatcca
     4621 aaacttatcg atgagcttta tgatctttat aaaagtataa aaccttccaa tgctttagaa
     4681 tacttgcacg atagcataga tcatttagag agtattttaa ctctttttga tttgggctat
     4741 gtggatttac aagatcgttc caatgctgaa attttaactc atttgattac aaaaaaagcc
     4801 atcttgcttt taggcgataa gcaaaatcct gcggatttac ttgccataca agatgaagtg
     4861 caagaaaggt atttggtaaa tttttcgctc tttcaaagca tgcctgattt ttggggttta
     4921 gaacagaatt tccccatcat gccacttgat cgcttagatg aagaaccgac acgaagtgca
     4981 agtatttggg atataacctg cgatagcgat ggagaaattt catactctaa agataaacct
     5041 ttatttttgc acgatgtaga tgtagaaaaa gaaaattatt ttctagggtt ttttcttgta
     5101 ggtgcctatc aagaagtact tggaatgaaa cacaatcttt ttactcatcc tactgaagct
     5161 attataagca tcaatgaaaa aggctatgaa gtcgagggga ttatagaagc gcaatctata
     5221 cttgatacct tagaagattt agactatgat atacacgcta tcatggatat acttaatgaa
     5281 cgcataagta attctaagct tgtaaatgat aagcaaaaaa agcatatttt aggcgaactt
     5341 tatcttttct taaatgataa tggttattta aaaagcatag gagtttagat gaatttttgg
     5401 ggtattataa aagaagattt ttctcagcca aaggcacaag atccagcttt taattcttgt
     5461 atagaacttt tttttaatta ccctggaatg tgggctatag taaattaccg ctttgcacac
     5521 tttttttaca taagaaattt taaacgcatt gccagaataa ttagcggaat ttcacaattt
     5581 ctaactgggg tagatttaca ccctggcgca gaacttggaa ggcgtgtttt tatagatcat
     5641 gccaatggag tggttatagg ccaaacagca attatagaag atgatgtttt aatttatcaa
     5701 ggcgttactt taggtggaac aagtcttgaa aaaggtacta aacgccatcc aaccataaaa
     5761 aaaggagtga tcataggttc aggtgcaaaa gtacttggca atatcaccat aggagaaaat
     5821 gccaaaatag gctcaaatgc tgtagtggtt aaggatgtag gtgcaaattt aactgctgtt
     5881 ggaattcctg cttatattat tgaagagcgt aaaaataaaa atattagagc catagatgca
     5941 aattgcgatg acaaactaga aaagctagaa aagaaaattt tagaacttga aaatcttata
     6001 ttaaaacaac atgaatcaca aaaataataa ttttttataa tacataaaat tatatgtatt
     6061 atta
//
LOCUS       DAQSLY010000096         5953 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.097, whole genome shotgun sequence.
ACCESSION   DAQSLY010000096 DAQSLY010000000
VERSION     DAQSLY010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5953
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.097"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..315)
                     /locus_tag="R2H98_001417"
     CDS             complement(<1..315)
                     /locus_tag="R2H98_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024283.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WAL"
     gene            complement(317..862)
                     /locus_tag="R2H98_001418"
     CDS             complement(317..862)
                     /locus_tag="R2H98_001418"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEE9024284.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            complement(859..1395)
                     /locus_tag="R2H98_001419"
     CDS             complement(859..1395)
                     /locus_tag="R2H98_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEE9024285.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            1529..1867
                     /locus_tag="R2H98_001420"
     CDS             1529..1867
                     /locus_tag="R2H98_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEE9024286.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            1870..2184
                     /locus_tag="R2H98_001421"
     CDS             1870..2184
                     /locus_tag="R2H98_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEE9024287.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            2194..2799
                     /locus_tag="R2H98_001422"
     CDS             2194..2799
                     /locus_tag="R2H98_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEE9024288.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(2786..4069)
                     /locus_tag="R2H98_001423"
     CDS             complement(2786..4069)
                     /locus_tag="R2H98_001423"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEE9024289.1"
                     /translation="MQNQILKNLDLEHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKPLLLECLSTPVPQSKDYTQELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHQFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYILESLEQIFKEF"
     gene            4136..5278
                     /locus_tag="R2H98_001424"
     CDS             4136..5278
                     /locus_tag="R2H98_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEE9024290.1"
                     /translation="MSLENILEALEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSSCKSLKDEFLDNVKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALVSIPNTLFLADKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGENQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVVELL"
     gene            5275..5886
                     /locus_tag="R2H98_001425"
     CDS             5275..5886
                     /locus_tag="R2H98_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEE9024291.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLNSFSKITLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEVLFEECKSLAKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            5883..>5953
                     /locus_tag="R2H98_001426"
     CDS             5883..>5953
                     /locus_tag="R2H98_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-[acyl-carrier protein]
                     O-methyltransferase BioC"
                     /protein_id="HEE9024292.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKL"
BASE COUNT         2075 a          935 c          870 g         2073 t
ORIGIN      
        1 taaagcccat aaaaaaggaa ataaaataac ataatttcta ctcagtccta acgcataaag
       61 acttacaaat tcatttgctc tgatcataga aatcaaagaa actaccaaag caaaaatcaa
      121 agaaatgggt aatacataag gcactgccga aaaagataaa aacataacat aaagcaaatc
      181 aagatttgcg gcttttggta gatctttaaa atttaagagt aaatcaatac cgcaataaaa
      241 accaagtaaa gaaaaaaata taataaaaaa attttttaaa taaatccctg aaataaaacg
      301 aaaaaatatc cacatcttaa gcctttaggc tgtatttgga tgatatagca gacaaatcat
      361 cattttcaat aagctcaagc aaagcttttt ttgtatgctc taaaactttg cttaaagtta
      421 tttcttcttc ggatttaaat ttacctaaaa catgggaaat cacattttca ccctttccca
      481 ctcctatacg cactctttca tagtcatttc cacataaagt atctatgctt ttaagcccat
      541 tatgtccacc acttgaaccg ccttttttaa agcgcaaggc tcctaaattt atatctatat
      601 catcatggat aactatcatt ctttcgcatt tataaaaatc attcactgct tttacgctaa
      661 gtcctgaatt attcatataa gtactaggtt taagaagaag taaagaagaa cctattttaa
      721 aaagctctcc tttaaattta gagtttgtaa gatttgtaaa attgctttct tttaaaagta
      781 agtcaattag cataaaaccg acattatgac gggtattttc atactctacg cctatattgc
      841 caagccctac gactaaaatc atctagcttt ttctacacct acaaccgcta ctctatcagc
      901 atcaatcata gttactcccg caggaactac aatatcacga acaagtaaag catcacccac
      961 atcaagttta cttacatcaa gttcgaagaa atttggtaaa ttttcagctg cacattttac
     1021 ttttaatctt ctttttgatt ggattaaaac acctttattt ttaagaccta tagctgttcc
     1081 tgtgatttta actgggacca tgtatttaga aatcacacct ttttgtgcaa cttttaaatc
     1141 cacatgttta agttctgcag ttacaggatc tttttgataa tctacaacta caacgcttaa
     1201 agtttgagaa cctactttta catcaaaaat taaagtagtt tttttacgaa cttccttaat
     1261 aaactcattt actttaaaag cggcattgat gttttctaat ccttttccat agatgtttgc
     1321 gattagataa ccatctcttt ttaaagcttt agcagctttt ctaccgatac tctctctaac
     1381 gatgccttct aacatctttt gtcctttctt aaaaaatgag ctttgattat atctaatttt
     1441 ggcttatgga aaagtaaatt tatagcttct tttaatttct ttaagatata atttgtttta
     1501 caaatattat gttaatttaa ggcttcatgt gaatgaaaaa ttcaatatta atatagcttg
     1561 gtttttaata atcttaggtg gaattataga atgcttttgg gtaagtggac ttaaatattc
     1621 tacagaaatt tggcagtata ttttaacagc cattggggtt tgtatttctt ttacttgctt
     1681 tttaaaagct tgtgaaagac ttgaagtaag tattacttat agtgtttttg taggcattgg
     1741 cactattggg gtggttttaa acgaaatgtt tatttttaac gaagctgttt ctataattaa
     1801 acttgtgctt atagcaattt tacttttaag tattatagcc cttaaatggg taagcaagga
     1861 agcttagtta tggaatggtt ttatttgttt ttagctactg cctgtgaaat ttttggcgtg
     1921 gtgatcatga aagaacttgt aagcactaaa aacaagcttt accttttagc tttgatagtg
     1981 tgttttggat tttcttttac ttttttaagc ttaagtatgc aaaatatcgc tatgagcgtt
     2041 gcttatgcta tatggacagg agctggaacc gctggtgggg taatgatagg agtgcttttt
     2101 tataaagaaa gtaaaagttt tttaaaactt tttttaatca ctgtgattat tgcttgtaca
     2161 gtaggtttaa aatttctttc ttaaggattt tttgtgcaaa tttatgtgag tggaatacat
     2221 actgatgtag gaaaaacaca ttttagtgca gctttttgtg cgaattttaa ctatgattat
     2281 tttaaactca ttcaagcagg aactccaaca gatagcgagt ttattgcaaa atttagccca
     2341 aaaacaaaga tttttaaaga aggtattttt ttgcaaactc cagcttctcc tcatcttgga
     2401 aaaatcaaag aaaagcttga ttataaagcc ttagatatca ttttaccaaa aagcaaaaac
     2461 ctacttattg agcttgcggg tgggcttttt tctcctatgg atgaaaatta cactatgatt
     2521 gattttgtga atattttcaa acaccctacg attttggtag caaaatacta tcttggaagc
     2581 attaatcata tcttgcttag cattgaagct ttaaagcaaa gaaatatcaa tcttttagcc
     2641 cttgtaatga tgggtaaaaa agatatctta caagatgatt ttataaaaaa ttatgcaaaa
     2701 attcctataa tcaatcttga tttttttgat gaaaatagca ttttaaataa agattttaaa
     2761 gagcaaatgc aagaaatttt acaacttaaa attccttaaa aatctgctct aaactctcta
     2821 gtatataaac gatttgttct tttgtgatga tgtaaggagg cataaaataa atcgtatttg
     2881 ctaaaggtct taaaagcaaa cctttttcta aggctttttg aaatacaaaa agtcctacgc
     2941 gtttatactt ggtgcttaaa atatcaaaag cactgatcat cccgcaagtt ctaaaattac
     3001 ccaaaaagtc aaatttttca agtcttgaaa attctttttt gataaactcg cttaaaattt
     3061 gattttttac taaaatattt tcatcctcaa agatatctaa aaccgcattt gctgccgcgc
     3121 aagctaaggt atttcccgta tagctatgag aatgtaaaaa agccttttgg ctttcataag
     3181 tatcataaaa agcattataa atttcatctc ttgtaagcac tacagaaagt ggcataaatc
     3241 cacccgttat cccttttgaa agacagataa aatcggggct ttgtttgcat tgatgtaagg
     3301 caaacaaagt tcctgtgcgt ccaaagccca ctgcaatttc atcaaaaatc acttgcactc
     3361 caaattgatg gcaaagcttt atggcctcat caatgaaccc tgcttcatac atatgcatat
     3421 ttcccgcaca ttgcaccaaa ggttcaagta taaaagcgca aatttcactt gcattttttt
     3481 ctaaaatatc ttttaaaatt tcaagctctt gagtgtaatc tttactttgt ggcacaggcg
     3541 tgcttaaaca ctctaaaagt aaaggcttat aagtatcttt ataaagtgct acatctccta
     3601 cacttaaggc tcctaaggtt tcaccatgat aagaattact taaagataaa aatttacttt
     3661 ttttcactcc cttatttaaa tgataatgaa agctcatctt aagtgcgact tcaatagcgc
     3721 ttgaaccatt atctgcgtaa aaacatttgt taaaattcct gcctactttt tcgcaaagtc
     3781 ttgcagaaag cttgatgatg ggctcatgtg taaaacctgc taaaatcaca tgctctagct
     3841 catcaacttg ttttttaatg gcatttgcga ttttttcatt acaatgccca aaaagattta
     3901 cccaccacga gctcacacag tccatataag ccttatcatc aaaatcataa agccacactc
     3961 ctttagctct ttttatagga atgagtggca aattttcatg atctttcatt tgcgtacaag
     4021 ggtgccaaat atgctctaaa tcgagatttt ttaagatttg attttgcatt ataacttctt
     4081 ttttaaatat attttggcaa aataatactt taaatttctg aattttagga aaaaaatgag
     4141 ccttgaaaat atcttagaag cccttgaaaa aaatcacaat cttagaaaac ttacaagcct
     4201 caaacatgaa ggaaattttg tttttaaaga gggtaaaaag cttttaaatt tagcggggaa
     4261 tgattattta aatttaagct cttgcaaatc tttaaaagat gaatttttag ataatgtcaa
     4321 agaacaagac ttattttttt caagctcaag ttcaaggagc ttgagtggaa attttacaat
     4381 ttatgaggaa ttagaaagct ttttaaaatc caaatttaaa gaaaaagaaa tcttacattt
     4441 taacagcggt tatcatctta atatctcttg tatagctgca cttgtgagca ttccaaatac
     4501 acttttttta gcagataaat tcatccatgc aagtatgatt gatggactaa aacttggcgg
     4561 agcaaaattt tttcgctttc atcataacga tatgaatcat ttagaaaatt taattcaaaa
     4621 acattatgat cattatgaaa atatcatcat tttaagcgaa gcattattta gcatggatgg
     4681 tgatttttct gattttaata cactcatcgc ctttaaagaa aaatacccta aaatcaaact
     4741 ttatatcgat gaagcgcaca gcgtgggttg ctttgatgag gagggcttgg gacttgttaa
     4801 agctttaaat ttggaagaaa aggttgattt tatagttttt acctttggca aggctcttgc
     4861 ttctatgggt gcttgcatga tttgtaataa tctttataaa agctttttta tcaacaaagc
     4921 tagagctttt atttattcta cagcgctgcc tcctatcaat atagcttgga caaaatttat
     4981 ttttgaaaaa atgagcgagc taaaagaaaa aagagaaaaa ttacaaatca taggcaactt
     5041 ttttaaaaat caactcatag aaaaaaatca tcaaatttta ggcgatgctt acatcatctc
     5101 cttggttttg ggagaaaatc aaaagactat agaattagca aaaaaacttg aaacaaatgg
     5161 catttttgca cccgctataa aagaacctac ggtgcctaaa aatacagcta gaattcgttt
     5221 ttctttgcat gcaggactta gtaaagaaga tttaaagaaa gtggtagaac ttttatgaaa
     5281 ataagcaatt taattcaaaa tgaaaactca caagaactta tcttagtatt tggcggtttt
     5341 gcttcacatc ctagccattt tgcacattta aaaagcgata aaaatgtagt tttggtttat
     5401 gattatgaaa atttagactt taaatttgat ttaaactctt tttctaaaat cactctcata
     5461 gctttttcta tgggagtttg tgtggcaaat agacttttaa aagagcttaa ttttaaacaa
     5521 aaaatagcca taaatggcac aaatttaggc atagataaat caaaaggaat tcatcctaca
     5581 atttttaaaa aaaccctaca aaattttaaa ttagaacatt ttaaagaagt tttatttgaa
     5641 gaatgcaaaa gcttagccaa agattttatt tttaaagatg aaaaagcttt aaaaatagag
     5701 cttgaaaaac tttttgactt tgctttagta aaacaagaag aaaatttgct ttgggataag
     5761 gtttattcaa gtaaaaaaga tgaaattttt ccaccaaatg ctttaaaaaa tgctttttca
     5821 aaacttattt ttttaaatga accgcatttt gctttttttc attttaaaac ttgggatgag
     5881 ctttgaattt tttaaaagca aaagattatg aaaaacatgc aaaagtgcaa gatttcatgg
     5941 gtttaaaact ttg
//
LOCUS       DAQSLY010000097         5900 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.098, whole genome shotgun sequence.
ACCESSION   DAQSLY010000097 DAQSLY010000000
VERSION     DAQSLY010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5900
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.098"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..431)
                     /locus_tag="R2H98_001427"
     CDS             complement(<1..431)
                     /locus_tag="R2H98_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024293.1"
                     /translation="MKHCLALCFIFFLCACSVKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKKVFNQKFFKNVYYDDILSDIL
                     KANALWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFF"
     gene            complement(440..931)
                     /locus_tag="R2H98_001428"
     CDS             complement(440..931)
                     /locus_tag="R2H98_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEE9024294.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(921..1856)
                     /locus_tag="R2H98_001429"
     CDS             complement(921..1856)
                     /locus_tag="R2H98_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEE9024295.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(1860..3029)
                     /locus_tag="R2H98_001430"
     CDS             complement(1860..3029)
                     /locus_tag="R2H98_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEE9024296.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(3039..3644)
                     /locus_tag="R2H98_001431"
     CDS             complement(3039..3644)
                     /locus_tag="R2H98_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEE9024297.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCRSNNDNSDTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(3764..3976)
                     /locus_tag="R2H98_001432"
     CDS             complement(3764..3976)
                     /locus_tag="R2H98_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEE9024298.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            4137..5513
                     /gene="ccoG"
                     /locus_tag="R2H98_001433"
     CDS             4137..5513
                     /gene="ccoG"
                     /locus_tag="R2H98_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEE9024299.1"
                     /translation="MQGHITNYTKERYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYEGQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            5500..>5900
                     /gene="cmeR"
                     /locus_tag="R2H98_001434"
     CDS             5500..>5900
                     /gene="cmeR"
                     /locus_tag="R2H98_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEE9024300.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENN"
BASE COUNT         1999 a         1036 c          722 g         2143 t
ORIGIN      
        1 tcaaaaaaac ttactttatt atcacaaact tgataaaaaa tttcataatt ttttgctttt
       61 aaattttgtt caaaaccaca atcagttttt tctaaatttt taccctgcca taaagcattt
      121 gcctttaaaa tatcacttaa aatatcatca taatatacat ttttaaaaaa tttttgatta
      181 aacacttttt tatcataaca cactgcattg atacaaattt tatctttgat tttgagttca
      241 aaaaaagctt gccctagttt ataaacttct aaatttaaag cattattttc tttttttaaa
      301 aaagctgcgt cattgatttt tatcatagga gaagcaatca aaaccatcaa gctttgactc
      361 gaaaaatttt gatttttcac actacaagca caaagaaaaa aaataaaaca cagggctaaa
      421 caatgcttca aatttgacct tatttaagat ttttaaaact gatatttaac tctaaatcaa
      481 gctcttttac aagcttcatc acagcttgta aatcatcaat ttgttttgct acaacacgaa
      541 tttcttcacc acgaatcgaa gaattaactt taagtttgct atctttgata gctttattga
      601 tttttttggc attttcacta tcaatagcat cgtttgcttt caaatttaaa cgaaacattg
      661 ctccactttc acgagaaagc tctttaatag cattaggatt aattcctctt ttgataagtt
      721 tagaaatcac tatatctttt aaaacatcaa gctttccttc actagaagaa ctgagtttaa
      781 aaatactctc tttttcgctt aaatcaatct cacacttaat tccttttaag tcataacgac
      841 tatcaagttc ttttttagct tgttcaaaag cattttttaa ctcttgttta tctaaagctg
      901 ctgaaatatc aaaactatgt tcacttgcca ttttctatcc attcttttaa attattataa
      961 actatatcca ttaaagcatt taaagcctcc ttgctcgccc acgcaacatg aggagtgata
     1021 ataagatttt ctttattttt aatgcttaaa agtggatgat ttttcatcat aggttcaatt
     1081 tctaaaacat caagccctac acgaatattt ttttcatcta tgattttagc taaatcattt
     1141 tcattgacaa tcccacctct tcctacatta atcaaaatcg cattatcttt taaaagcttt
     1201 aattcttcaa aggcgagtaa atttttggtt ttttcattta aaggtgcgtg gatacttata
     1261 atatcgcaag tttttaataa atcttttaat tccaaatgta caaaatctgc gtttttatta
     1321 gctccactcg tagaataata ataaatttcg gctccaaaag cctttgaaat ttttgccact
     1381 tctttaccta tggttcctaa acctataata ccatgttttt taccacttaa ggtgtttaaa
     1441 attctactat aatctgtaaa aataggactt tcacaccatt taccctcttt gctccatttg
     1501 tcataataaa gcacttgatt taaaaaagca aacataaacg caaaagtatg ttgcaccaca
     1561 ctcatagtag aatacccagc agcatttttt acaataatac ctttttcttt agcatactca
     1621 atatcgatat tattaacccc tgtagcagtt tccaaaatga gttttaaatt tttacaagca
     1681 tcaatcacat ctttatcaat tacaaccttg tttgtcatgg cgacattagc atcttttaaa
     1741 cgctctatgg tttgctcttt atttgttgtg gtataaattt gcaaagaacc aaatttttca
     1801 aaaacactta aatcataatc ccctaaagtt gccgcatcta aacaaacaat tttcattttt
     1861 caatccttta taatatgtcc tacaaattta gaataattat caagcacaag tcctcctttt
     1921 ctaaatccta agccacaccc ttcataagca aagaaaacac ctgcttgata gtattcgttt
     1981 tcacatgaat taaactctac atattcttga taaatagcct tattattccc ataaggacct
     2041 acattctcat gcaaagtttt tccatcttta attatactga tatttgcacc ttctctacca
     2101 aaaacaggtt ttttaacata gtttttacct tccaaaggag tatcttttgt ttctaaaagt
     2161 aatggatgat ttggataaag ttcccataga atttttaaaa ttcccttaga ttgaaataaa
     2221 agcgtataag caggatttaa aataattgct ctttgattac gcatgatttg agttaaaagc
     2281 atggcaagtt caccctcttc tatggctata tcttcccaag gaataagctt aaaccaatac
     2341 tcataatttt cgccctcttt aaaaataccc tcttcgctaa attccacctc atccacaaag
     2401 gaaaaattag tttgaaaacc tgcttcattg gctatatgtg caagcaattt tgtagtgatt
     2461 tcttcttctt tacttcctgc aacacttgaa aaaagaattt tccatccttg ataatgctct
     2521 tcaaaccctt caacactttc atcaagggta ataagtcttt taaaattatc catcaaactt
     2581 tcataaatgc tattaaattg tgcgctttca tccattccat tttgttttaa aagtgcccat
     2641 tgtaaaatcg cactttcaaa aagagcagta ggggtatcag cattaaattc tataagtttt
     2701 ataggcttgc catcaagtcc acccgctaaa tcaaaacgcc catataaatg ccaatgaacc
     2761 tcattttccc aactcatctt aattgcatca ataagattaa aaggaattcc aagctcatca
     2821 aaacgatcat tatcaatcac ttcttgcgct gcagcaataa acatatcata aagctcattt
     2881 accgcttcat aataagcatt agcttcactt tccttaacac aaactaactt attgctaata
     2941 taatcacttc catcttcatc tgtatgccaa gaaaaaccta tattttctaa ataatctttt
     3001 tgaagtttat ctacttgtag taattgcatt atttatcctt aagaaccaaa agaagaacta
     3061 gaacttgtgg ctttagagcc tccgccaaaa aagcctgatt ttttagcact tgaagcagag
     3121 cttgttgtgc ctgctttatt aaaactatta acactccttt gataagcact ttgatttgaa
     3181 aaagcaccgc gttgttggtt ggcaaaattt tgattattga aaagttttga acctatccaa
     3241 cttcctaaaa tagcacctgc agcacttgcg agtaaagttt cccctaaact caatccccca
     3301 ctactgattt gtccattgtc tttagttaaa tttgaagttc cattatcaat tttagctgct
     3361 tcttctttaa tcaaagcatc catttcttct ttggataaaa ttctttctgt gccattaaga
     3421 tcttttaaaa ctacccttgt ttcatcactt ggatattgat ctttgatttt atactgccct
     3481 ggagctgttt cttcgataat tacaaaagct ccttgagcat tagctgcttg atttaaagta
     3541 tctgaattgt cattattact tctacaacct gctaaagcac ctccagcaac agctgctaaa
     3601 ccacctatca taccaatttg aatgattttt ttgatttttt tcataagttt atcctaaaaa
     3661 cagaaaattt aaattagaaa ttttaacaaa aaataataaa tactttttaa tttaatacca
     3721 aatgaagttt gtagatataa aaaagccctt tcgggctttt gggttagagt cttgactcgt
     3781 agcgtctaag catataaagt cttttaagca tttttttgcg tgctgaaatt ttttgttttt
     3841 tgcgaatttc agtcataggc tcaaaaaatc ttcttgccct tacttcagtc acaactagat
     3901 ttctatctac ttgttttttg aatttacgat acgcttcatc aaaagactcg ttaggatgca
     3961 ccttgattcc tggcacagtc ctcaccacct ttctgtgtaa atttttgttg tgaaatataa
     4021 ttataaaaca cttcttatta attctaactt agaaagcatt taaaaattgt tttagttttt
     4081 atcggttata atccttaatt acaaagtact aaaaaattat aatttaaggt ctaaaaatgc
     4141 aaggacacat tacaaactat acaaaagaac gatattttgt atatttaatt gcaagtatta
     4201 tcatatttgc cctacctttc ataagaatta atgagaatca tttttttctt ttaagttttg
     4261 atcattctaa attaaaccta ttttttattt ctttttcaac acaagaattt tatctcatgc
     4321 cttttgttct tatatttctt tttttattta ttttttttat tacaacttta ggtggaagaa
     4381 tttggtgtgc ttggagttgt ccacaaacga tttttagagt tatatataga gatatcatac
     4441 aaactaaatt tcttaaaatt cgcaaaaata tcaataacaa acaaaaagaa tatgagggac
     4501 aatattttaa aaaatttctt ggagtaataa ttttttattt tatatcttta gttgctgtta
     4561 gtaatttact ttggtacttt attcctcctg aagatttttt caattatatt caaaatcctg
     4621 gcgagcatct acttttactt ggaattttat tttgtgctag cttacttttt actttggata
     4681 ttacctattt acaagaaaaa ttttgtgttt atgtctgtcc ttatgcaaga atacaatctg
     4741 taatgttcga tcatgataca atgcaagtga tctacgatga aaaacgcggg ggcttgatct
     4801 atgatggaca caccaaactt cataaaaaac cgcctgaggg agaatgcata ggttgcgaag
     4861 cctgtgttag catctgtcca actcatattg acatacgcaa aggaatgcaa cttgaatgta
     4921 ttaattgtct tgaatgtgcc gatgcttgct ctaaggttca aagcaaattt aatcgtccaa
     4981 gtttgatcaa ttggacaagt gcaaaagcta ttgaaacgcg ttctaaggtt cattatttaa
     5041 gatttagaac gatagcatat tttatagttc ttctaattgc tttactggct ttaatcatca
     5101 tgggaagcaa aaaagaaagc atgcttttaa atatcaatcg tagtagtgaa ttatataata
     5161 tttcaaatgt taaaggtgaa ttagtcattt caaatgctta tacctttttg tttcaaaata
     5221 cagattctaa acctcatgaa tattatttta cagcaaattt agaaggaata aatgatggaa
     5281 ttgaaatcat aagaccaaac aaacctttta aattaaaagc aggagaacaa gtcaaaaaaa
     5341 tagttgttat cagggctaca aaaaatttag caaataatga taaaaaagac gtaatctttc
     5401 ctttacatat aaaagcttac gcaaaggata atgaaaaaat ttcggttttt agaaaaagta
     5461 tatttgtata ccctaaaagc actcttataa aggataaaaa tgaactcaaa tagaacacca
     5521 tcacaaaaag ttttagccag acaagaaaaa atcaaagcag tggccttaga gcttttttta
     5581 acaaaaggat accaagaaac aagtttgagt gatattatta aattatctgg aggatcttat
     5641 tctaatattt atgatggttt taaaagtaaa gaagggctat tctttgaaat tttagatgac
     5701 atatgtaaaa aacactttca tcttatttat tccaaaacac aagaaattga aaatggcact
     5761 ttaaaagaaa ttttaacttc ttttggttta gcttttatag aaattttcaa tcaaccagaa
     5821 gctgtagctt ttggtaaaat tatctattct caagtttatg acaaagatag acatcttgcc
     5881 aattggatag aaaacaatca
//
LOCUS       DAQSLY010000098         5811 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.099, whole genome shotgun sequence.
ACCESSION   DAQSLY010000098 DAQSLY010000000
VERSION     DAQSLY010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5811
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.099"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..713)
                     /locus_tag="R2H98_001435"
     CDS             complement(<1..713)
                     /locus_tag="R2H98_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEE9024301.1"
                     /translation="MLRWFVLLFLLFFNLEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKDPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAQLKNGKIDAALIDVSL"
     gene            complement(823..3594)
                     /locus_tag="R2H98_001436"
     CDS             complement(823..3594)
                     /locus_tag="R2H98_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEE9024302.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAS
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIVNNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSHKRACNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIVPKLRIDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
     gene            3746..4168
                     /gene="cgb"
                     /locus_tag="R2H98_001437"
     CDS             3746..4168
                     /gene="cgb"
                     /locus_tag="R2H98_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEE9024303.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRNFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYINIEKKLYDK"
     gene            complement(4188..5807)
                     /locus_tag="R2H98_001438"
     CDS             complement(4188..5807)
                     /locus_tag="R2H98_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012662215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEE9024304.1"
                     /translation="MELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNAQNIP
                     IFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGKARIL
                     ASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSLQIFALCVVWIMVIFITNNF
                     LMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARLKKKN
                     STLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTPLVSM
                     IGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENFHLNP
                     VNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEYRSLI
                     SAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQKKRL
                     AMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAYFDSA
                     DRIFLAQNGEISELKGENIKELAKNLVEKFD"
BASE COUNT         2050 a         1019 c          698 g         2044 t
ORIGIN      
        1 agagaaacat cgattaaagc tgcgtctatc ttgccatttt taagctgagc actagctata
       61 gaaggatcaa aaatgtgttt tataataagt cttggagttt ttaccttatc aagataaaaa
      121 tgttcattgg ctttaaattc aacatattca ccttttttcc attttacaaa tttataagga
      181 cctgtaccta taggattttg attaaaagag cttgtgttta aattctcatt ttcaagcaaa
      241 tgtttaggaa gcatacctat gcttaaagca tctaaaaatg caggataagg cttaaaaagt
      301 gtgattttca catgagaagg atttaaaatt tccacacttt taatgtcttc aaaattgaca
      361 taaacagaag aattgttttt aggatcttta aaggcttcta tactaaattt cacatcatca
      421 gcactaaatt tgactccatc atgccataaa acatcatctc ttaaaaaaat atcataaaca
      481 agcccgtctt tactaacatc ccaagactta gccaaatcag gttttaaact catattttca
      541 tcaaaacgcg taagccctga aaatacaaga ttaatcactg catcatgatc ctcactataa
      601 gcaggattta tccttgaaat ttcattttcc acagctacga ttaaagtatc ttttggaatt
      661 ttagcctcaa gattgaaaaa caataaaaat agtaaaacaa accatctaag cacttgtaac
      721 tcctcaaatt taaaatttta aagaattata aaataaaaaa taagaagcca caagccctat
      781 ggggggataa tttgctttaa attatggagt tttatttatc aattaaattg cttcactgca
      841 ttcatccaat aaatacgcta tatgctgcca agatataccc gtagcatcgc ttaatcctat
      901 ctcgcaagtg cttgatgtac taaacccgcg cttaatattt gttttggcat aaaatttttt
      961 aaagcccttt gtagcactaa tatttaattg aggcttgaaa aagcccttgt atccagcaaa
     1021 cccacaacaa taggtatcat tatctattaa tacttttcca ttcgtacata gctttgcaag
     1081 cttaattata ttttcattta aaccaagctt tctagcagca cacatgatat ataatcctac
     1141 attctcattg attttatcaa tgcgtaactt aggaacaata aattttaata aatactcgct
     1201 taaatcataa atttcatact ttgaatgatc actaattaac ttagcactac aagcactatg
     1261 atctaacact atgggtgagt ctatattgct taaaaagtca ttgatttttt gtatattttt
     1321 atcttgaata tcttgaaaat tctcataagc cttaccacaa cataaatcat tgggtgcata
     1381 aataatgcct atatttgctt ttttacacaa gctctcaaat acttcttgca aacttctttt
     1441 atcatgcatt ttttcatttg gtttaaagct tttattaaga cagcttgtaa aataaaccac
     1501 attgcaagct cttttatgac tttttagctc ataatcattc accttaggca aatacgccct
     1561 agttcttggt ataatgctaa gaaaattgct tgctttttca agcttattat caagacttaa
     1621 attatcaaat ttatttgcga tacttaatga aaatttagca atttttagag ttttttcatg
     1681 atttttatat gctagatttc ctaaaatttt agatataaat cctatattat tttttctata
     1741 ttttaatgaa aaatcagcaa aattaatccc caaaggacat gaaaaagagc acactccaca
     1801 agcagcacaa gagctgtcta ctaaatgatt gtaatatttt ttaatatcct ttaattttgc
     1861 ttttgactca tcatcattta agctttcaag gcgtttaatc tctcgtaaga tcgcaattct
     1921 ttgtcttgga gtaattgtat attcatttga tggacaaaat ctttcgcaaa atccacattc
     1981 catacaggta tttaatttct catcaatcca actgacttgt ttgatatttt tcttataaat
     2041 atctttatca tcgctaatga ttacatcggg attaaataaa ctatccttat caaagatact
     2101 tttgattttt ttattgatca aataagcttg cttaccccac tctacctcca caaaaggtgc
     2161 caccatacgc cctgtgccgt gttcagcttt tatacttcca ccataagaag ctactatatt
     2221 agacatttct ttaactagat ttgaaaaatt atcaaattca agcttattgt ttaaatccgg
     2281 tgtgataata aaatggatat tgcctgctaa tgcatggcca aaaatgattc cattatcacc
     2341 aaagccatat ttataaaaca attcttgaat gcttttaatt ccatcggcta aatcctcgat
     2401 attaaaacac acatcttcag taattaccgt tgaacctgcc tttctaagac tagctgctat
     2461 aggcaagagt gcttttctaa tcttccacca taaatcatat tcggccttat tcttgctaaa
     2521 atatgactta taagccagtt tggaaatttc ttttatttta tttatatttt catcaagctt
     2581 aagctcatta ctatgctcac tttggatcaa tacacaagta ttaccctctt taatatcagc
     2641 taaaatatct cttaactcat cataagttga tgcagctttt aaacttgcat agtccattat
     2701 ttcagcagaa cttacaaaat caactttagc aaattctttt atagtgtttg cagcattatt
     2761 gatattatca aaaaacaata aagcacaggc cttaaattcc aaatcatcca aaacagcaag
     2821 cttaacttcg cttacaaatc ccaaagtccc ttcagagcca ataagcaagt gtgctaaaat
     2881 atctatttca tcatcataat caacaaaggc attaaggcta taacctgtgg tgtttttgat
     2941 tttaaatttt ttgattatta aatcttttaa ttctttattg gcattaatct cttctttgat
     3001 ctctctaagt tcattaatta attttttatt ttcatcttta aatcgagcca cgcttaaagc
     3061 atcactggta tcaagcatac taccatttgc caaaatcacc ctaatacttc ttaaggtttt
     3121 atagctatta tccttagttc cgcagcacat tccgcttgaa ttgttattta caatccctcc
     3181 aattaaagct gaatttatag tagctggatc aggtcctatt tttttcttca aaaaagcaag
     3241 actttcatta gcatgaatgc ctactacacc acatcctaaa gtaatttcgc tagcgtcttt
     3301 gttaattttt atttttttaa aggcaaattt aatcactaca agtactccat cacaagagct
     3361 ttgtccactt aaacttgtac ctgctgctct aaatgttata ggagttttat aagtatttgc
     3421 taattgaata atttgcttaa tttcatcttc atttttagca ataatcacta tttttggaat
     3481 ataaaaataa cacgacgcat caatgccata agcatagcat ctagcataat cattaaaaat
     3541 tctatcctta aaaatatact tagcctcatt ataaaaagct ttaaaatttg ccatagtccc
     3601 tctttttaat ttattatcaa ttatataatt taataattta aagataattt taaatttata
     3661 tttttgagca taattttaac acaagtcaat ttttttctcc tttttaagat ataaaatatc
     3721 tcttttacaa caaaaaggag aaactatgac aaaagaacaa attcaaatca tcaaagattg
     3781 tgtgcctatt ttgcaaaaaa atggagagga tttaaccaat gagttttata aaataatgtt
     3841 taatgattat cctgaggtaa aacctatgtt taatatggaa aaacaaattt caggagaaca
     3901 accaaaagct ttagcgatgg cgattttaat ggcagctaaa aatatagaaa atttagaaaa
     3961 tatgagaaac tttgttgata aagttgccat aactcatgtt aatttagggg ttaaagaaga
     4021 gcattatcct atagttggag cttgcctttt aaaagctatt aaaaatcttt taaatcctga
     4081 cgaagctact cttaaagctt gggaagttgc ttatggaaaa attgctgaat tttatatcaa
     4141 tatagaaaaa aagctctatg ataaataata taagcccatt ttgggcttta atcaaatttt
     4201 tctactaaat ttttagctaa ttcctttata ttctcaccct ttaattcgct gatttcacca
     4261 ttttgagcca agaaaattct atcagcacta tcaaaatatg catcatcatg tgtgatagca
     4321 aagattgttt taccttgctc ttttagcaaa ggtaaaagtt ttttataaaa aaatcttcta
     4381 aaaacaggat cttgatcagc cgcccattca tcaagcacta aaatatccct ttcttcaagc
     4441 aaggctataa gcatagctaa acgctttttt tgccctgtag aaagtttggt taaggtcagt
     4501 tcattatctt tgacacttgt tttatcttta agttctaaaa actccaacca aaaagcaatt
     4561 ttttcttcgc ttgcaaaatt ttctttattt aaggttttag taaaaagatg aaaatcgcta
     4621 aaaacagcag aaataagaga tctatactca tctaaatttt tatcatctat aagcgtatca
     4681 tcaacataaa ttccgccttt gcttggctta aaaagtcctg tcaaaagcat acaaaaagtg
     4741 gatttaccac ttccattttt acctattaaa aataccaatt cacctttttt aagttctata
     4801 tttacaggat ttaaatgaaa attttcttca taagcaaatt gagtatttct aaaagaaatt
     4861 tttttccatt cactgatata atgtgttttt ttaaaacctt ctatataatc atctaattcc
     4921 aattttgcga tcttatccaa agcgattttt gccaaaagca aagtaggaaa agatcctatc
     4981 atagatacta aaggggttcg taaaaacaaa atagaaagag ctatagttgt agcatctgca
     5041 acacttgccc attcaaattt taaagctaag taaaactcta cgcccactaa agccaaaaga
     5101 gttacatttg tccagttgtt tgagagattg ttaaaaagat tgcctaaagt actatttttc
     5161 tttttcaatc ttgcattatt ttcaaattca tcttcatagt aaagcttggc tctgtcacga
     5221 ttgatcaaaa gttctttatg tccatctaat atattttggt aattattttg caaagcatcg
     5281 tcattttccc ttgcctttcg aaaatactga tatactttca tcatcaaaaa attattagta
     5341 ataaaaataa ccataatcca taccacacac aaagcaaaaa tttgtagtga aagataacat
     5401 aaataaacac tagtgcataa aatcaatata cttgattgta aaaaatcagg caatcttaaa
     5461 agcccaaaag atatatttct cacatcactt cccaaagaag ctaaaattct agccttacct
     5521 actttagcga ctcttaacaa aggggtgtct aagatctgct ttactacgcg cctttgcatt
     5581 ttaaaaataa aattttgtcc aaaaatacta agtccaagtt caactatggt agaacttata
     5641 aaaaaaatca aaagcaaaac aataaaataa aaaataggaa tgttttgtgc atttttaagc
     5701 aaataatcat tgataaaaac aagagttaaa actccaacag cgcttgtaat aaaagaaaaa
     5761 agcaaaaaag aaatcaactt taatttattt tgcttaagta attccataat a
//
LOCUS       DAQSLY010000099         5780 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.100, whole genome shotgun sequence.
ACCESSION   DAQSLY010000099 DAQSLY010000000
VERSION     DAQSLY010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5780
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.100"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            200..1747
                     /gene="leuA"
                     /locus_tag="R2H98_001439"
     CDS             200..1747
                     /gene="leuA"
                     /locus_tag="R2H98_001439"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEE9024305.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGVATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPVLKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMWHENL"
     gene            1734..2810
                     /gene="leuB"
                     /locus_tag="R2H98_001440"
     CDS             1734..2810
                     /gene="leuB"
                     /locus_tag="R2H98_001440"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEE9024306.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENNNG"
     gene            2797..4209
                     /gene="leuC"
                     /locus_tag="R2H98_001441"
     CDS             2797..4209
                     /gene="leuC"
                     /locus_tag="R2H98_001441"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEE9024307.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIKNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            4211..4813
                     /gene="leuD"
                     /locus_tag="R2H98_001442"
     CDS             4211..4813
                     /gene="leuD"
                     /locus_tag="R2H98_001442"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEE9024308.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(4793..5323)
                     /locus_tag="R2H98_001443"
     CDS             complement(4793..5323)
                     /locus_tag="R2H98_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEE9024309.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKVSLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(5351..5426)
                     /locus_tag="R2H98_001444"
     tRNA            complement(5351..5426)
                     /locus_tag="R2H98_001444"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5391..5393),aa:Val,seq:gac)
     gene            complement(5430..5505)
                     /locus_tag="R2H98_001445"
     tRNA            complement(5430..5505)
                     /locus_tag="R2H98_001445"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5470..5472),aa:Ala,seq:ggc)
     gene            complement(5552..5639)
                     /locus_tag="R2H98_001446"
     tRNA            complement(5552..5639)
                     /locus_tag="R2H98_001446"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5603..5605),aa:Ser,seq:gga)
BASE COUNT         1977 a          773 c         1177 g         1853 t
ORIGIN      
        1 aagatgaaac aaatttttga aatttcaaat tcagtccaac aaaaaagtaa agacaatact
       61 tttaatctgc tactgcaact ctcactctaa aactcaattt tatttttaat cattttttac
      121 atttttaatt ttttatcatt gttgttaagt ttttgaattt ttaattcatt cagtctgttt
      181 ggttttaaag gattaaatca tgaaagataa taaaatcata atctttgata ccactttgcg
      241 tgatggagaa caagctttag gcagttcttt gggtatcaat caaaaattac aaatcgcttt
      301 agcgcttgaa aatttaggcg tagacgttat agaagcaggt tttccggtat cttcacaagg
      361 ggattttaaa gcggtgcaaa agatcgcttc taaggtgaaa aactcaacta tttgtgcact
      421 ttctagagca ttggataaag atatagatat ggcttatgaa gctttaaaag tggcaaagca
      481 ttttagaatt catactttta tagccacttc gactttgcat atgcaagata aattaaaaaa
      541 agattttgat gaaattttgt ctatggcaaa aagagcgatt ataagagcaa gatcttatac
      601 tgatgatgta gaattctcat gcgaagatgc aggaagaact ccgatagata acctttgttt
      661 tatggtggaa aatgcgataa aagcaggcgc taaaactata aatatcccag atacagtagg
      721 ctataccttg ccaagtgaat ttgctaatat catcaaaatt ttatttaaca aagtgccaaa
      781 tatagacaaa gctatcattt ctgtgcattg tcacaatgac ttaggtgtgg caacgggcaa
      841 tagcttaagt gctattttac aaggtgcaag acagatagag tgcactataa atggacttgg
      901 cgaaagggcg ggcaattgtg ctttagaaga agtggttatg gcgataaaaa ctaggaaaga
      961 ttatttaaaa ggtttttata ctgatattaa atgtgaaaat atctttaaaa cttcaaaatt
     1021 agtttcagct atcactaatg aaagcatacc ttcgcataaa gctatagtgg gtagcaatgc
     1081 gttttctcat agttcaggca ttcatcaaga tggagtgctt aaaaataggc aaacttacga
     1141 gatcataagc cctagtgcca taggaattca tgaaaatcgt atgttaatga cggcaagaag
     1201 tggaagggct atgataaaaa cttgccttga aaatttaggc tatgatgaaa atacttataa
     1261 tttagatgat gtttatgagc gttttttacg ccttgcggat aaaaagggtc aagtatatga
     1321 ttatgatttg gaagctttga tgtttttaag ctatgaaaat gaagaagaaa atgaatttgt
     1381 gattgaaaaa ttaagcgtga ttagtggcaa tatcccaacc gcttgtgttt gtatgcgtat
     1441 caaagaagag ctaaaaactg aagcttgcac aggaaatggt cctgttgaag cagtttttaa
     1501 ctgcattgct aggataacaa atttaaagcc tgtgttaaaa gcttatagta tcaatgcaaa
     1561 aagttcagga gtagatgctc aagggcaagt ggatgtggat ttggaattta aagggagaaa
     1621 attccatgga aaaggacttt caacagatgt tatagaagct tcagcacaag cttttgtgag
     1681 tgcttacaat gcgatttatc gctctttaaa agtagaagaa aggaaaatgt ggcatgaaaa
     1741 cttataaagt agctgtctta gcaggagatg gtatagggcc tttggtaatg aaagaggctt
     1801 taaaaatttt aacttttatc gcgcaaaaat acaattttag ttttgaattt aatgaagcta
     1861 aaataggcgg tgcaagtata gatgcttatg gagtggcttt aagtgatgaa actttaaagc
     1921 tttgtgagca aagtgatgcg attttatttg gctctgtggg tgggcctaag tgggataatt
     1981 tgcccataga tcaaagacct gaaagagcct cgcttttgcc tttaagaaag cattttaatt
     2041 tgtttgcaaa tttgcgtcct tgtaaaattt atgaaagttt aactcatgct tcacctttaa
     2101 aaaatgagat tatccaaaaa ggagtggata ttttatgtgt tagagagctt acaggtggga
     2161 tttattttgg caagcaagat ttaggcaagg aaagtgcgta tgatactgaa atttacacta
     2221 aaaaagagat agaaaggata gcccatatcg cttttgaaag tgcaagaata agaaagaaaa
     2281 aagtgcattt aatcgacaag gcgaatgttt tagcaagttc tattttgtgg cgagaagtgg
     2341 tggcaaatgt tgcaaaagat tatcaagata taaacttaga gtacatgtat gtggataatg
     2401 ctgcgatgca gattgtaaaa aatcctagca tttttgatgt tatgctttgt tcaaatcttt
     2461 ttggtgatat tttgagcgat gagttagctg ccattaatgg atctttgggt ttgttaagtt
     2521 cagcaagttt aaacgataaa ggttttggac tttatgagcc agcaggtgga agtgcacctg
     2581 atatagctca tttaaatata gctaatccca tagctcaaat tttaagtgcg gctttgatgt
     2641 taaagtatag tttcaaagaa gaacaagccg cacaggatat agaaaatgct atatctttgg
     2701 cattggcaca aggaaaaatg actaaggatt taaatgctaa gtcgtattta aataccgatg
     2761 aaatggggga ttgtatttta gaaattttaa aggagaataa taatggctaa aactttatat
     2821 gagaaagtct ttgatgctca tgtggtttat gaaggcaaaa acgaacttcc tatactttat
     2881 atcgatagac atttaatcca tgaagtaaca agccctcaag cattttcagg gcttaaaatg
     2941 gctaagcgta gaatggcaag agcggattta actttggcta ccatagatca tgatgtttca
     3001 actaaaagtg tggatttaaa tgcttgttct gatatggcaa aagagcaaat tacaactttg
     3061 atgcaaaata ctaaggaatt tggagtaagg cttttaggac ttggagataa aaatcaaggc
     3121 atagttcata tagtaggtcc tgagcttggc tttactttac ctggggttac tttagtttgt
     3181 ggggattctc atacggcaac acatggggct tttggagctt tagcctttgg tataggcacg
     3241 agtgaagtag agcatgtcat ggcaacgcaa actttaaaac aagccaaact taaaactatg
     3301 aaaatcgaat gtaaagggca gtttcaaaaa ggcgtttatg ctaaggattt gattttgtat
     3361 ttgatcgcac aatacggcac agcaaaaggc acaggttatg ctatagaatt ttgtggagaa
     3421 cttataaaaa atttaagcat ggaagctaga atgactcttt gtaatatggc tatagaattt
     3481 ggagctaaag taggtatgat agctcctgat gagatcactt ttgagtatat taagggaaag
     3541 gaatttgcac ctaaaggaga agaatttcaa aagtattgcg agtattggaa gagtttaaga
     3601 agcgatgaag gagcaaaata tgatgagagt attactctag atgtaagcaa gataaaacca
     3661 caaattagct atggaacaaa tccttcgcaa gtgattggta tagatgaaaa aattccaaaa
     3721 ataagtgatt ttaaaaatca aagtgagcaa aaatctttgc ttgatgcttt atcttatgta
     3781 aatttagagc aagatcaagt tatagaaggg gtaaaaatcg acattgtatt tataggatct
     3841 tgcacaaatg ggcgtttaga agatcttaaa atagccgctg atatcttaaa agggcgcaaa
     3901 attcataaaa atgttaaagc tttaatcgtg cctggttcaa tgcaagtaag aaaagaagct
     3961 gaaaatttag gactcgataa gatttttatc gaggcagggt gtgagtggag atatgcaggg
     4021 tgttctatgt gtcttggtat gaatgatgac aaagcaaatt caggtcaaag agttgcttca
     4081 acttcaaatc gtaactttgt aggcagacaa ggtaaaggtt ctatcactca tttgatgagt
     4141 cctgcaagtg cggcagcttg tgccatagaa ggtgttattt gtgataatag aaagtattta
     4201 ggagtttaat atgcaaaaat ttattataca taaaggtata gcttgtcctt tagaatatgc
     4261 caatatagac acagatcaaa ttatacctaa gcaattttta cttgcagtgt ctaagcaagg
     4321 ttttggcaag catttgttcc atgatttgcg ttatttagat gataaagaaa gtgttttaaa
     4381 tatggatttt aatctcaata aaaaagaata tcaaaatagc tctattttgg tgagttttga
     4441 aaattttggt agtggctctt caagagagca tgcgccttgg gctttggttg attatggtat
     4501 tagagctatt atcgcacctt cttttgcgga tatttttaaa aacaatgcct taggaaacgg
     4561 tttgctcact atagaacttg ctaaagatga ggttttggaa atagttgatg agttaaaaaa
     4621 atcccaagat aaaaatatag aaatttcttt gttggaaaaa agagtatttt ttaaagataa
     4681 gattttttct tttgatttag atgattttca cagaatttgt cttttggaag ggcttgataa
     4741 tatagcttta actttaaaac atgaagcaca aatcaaagcc tatgaaaaaa actcaaaaag
     4801 ctttttggtt tagaattttt tcataagcta aaaaaggatc ttggtaatta ggtatgtcaa
     4861 agtttccaca aaaattaaaa tcaagctttt taaaaagcga attcatagga aaatttttac
     4921 tatgagtatc tgctcttaaa cttaccttgt gattttccaa ggcaaaattt tcgcaaaaat
     4981 ttaaaagttt ttgtgctacg cctttgcctt ttgcattttg tttgacagct aaacggtgta
     5041 gataaaaggc tttatcatca taatttttgt taaaaataac ttgtttgtaa aattcaggtt
     5101 caaatttttc attgatacag ataaagccta aaatttcatc attttcttta aacacataaa
     5161 gttcttgtgc ttgtatatct tcttgaaaaa ctatttcatt gggataattc tcatcccatt
     5221 ggtgaaaatt catagttttc atagcattta aagcatcttt tgtgatttca agtatagaat
     5281 ttaaatcttt atggatggct ttttgtatga tagtgttttg catgataatc ctttgtataa
     5341 ggaagggtga tggtggctcc gattggactt gaaccaacgg ccactaccat gtcaaggtag
     5401 tgctctacca gctgagctac ggaaccatat ggtggagcat agcgggttcg aaccgctgac
     5461 cccaacgctg ccagcgttgt gctctcccag ctgagctaat gccccaaatg aagtttgtat
     5521 tataacttag tttgccttaa agtttatttg atggcagaca ggaagggatt cgaaccctcg
     5581 aaagcttgca ctttacacgc gttccaggcg tgctccttca accgctcgga cacctgtcta
     5641 tgaaataaag cgttcattat atctataaaa gctttaaaaa taaagaaatt ttttaaatat
     5701 tgaaaataaa attatttttt taaaaatcag aaaattttta gtaaaaagta gtataattat
     5761 atttttattt ttagtcaggg
//
LOCUS       DAQSLY010000100         5741 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.101, whole genome shotgun sequence.
ACCESSION   DAQSLY010000100 DAQSLY010000000
VERSION     DAQSLY010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.101"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..395
                     /locus_tag="R2H98_001447"
     CDS             <1..395
                     /locus_tag="R2H98_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024310.1"
                     /translation="LEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPT
                     PSVPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQI
                     FKENNASKPYHLPQTGYDIKLDESSTQN"
     gene            complement(392..901)
                     /gene="lolA"
                     /locus_tag="R2H98_001448"
     CDS             complement(392..901)
                     /gene="lolA"
                     /locus_tag="R2H98_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEE9024311.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            1001..3589
                     /gene="secA"
                     /locus_tag="R2H98_001449"
     CDS             1001..3589
                     /gene="secA"
                     /locus_tag="R2H98_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEE9024312.1"
                     /translation="MFLNTLKAVFGTKNDREIKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3586..4791
                     /locus_tag="R2H98_001450"
     CDS             3586..4791
                     /locus_tag="R2H98_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024313.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRVLFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4814..5599
                     /locus_tag="R2H98_001451"
     CDS             4814..5599
                     /locus_tag="R2H98_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024314.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            5661..5736
                     /locus_tag="R2H98_001452"
     tRNA            5661..5736
                     /locus_tag="R2H98_001452"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5694..5696,aa:Lys,seq:ttt)
BASE COUNT         1992 a          704 c         1069 g         1976 t
ORIGIN      
        1 atttagagga gtttaaacgc tttttagaaa gtactgaggc taaagagaag ggtatgggta
       61 gcgaggtaaa aaaagcactt gaaaacttag aagttcctaa aactcaagtt cctagtgttg
      121 aaaagatccc aactcctagt gttccaaatt tagaagtcaa gcaagttgaa cagcttttca
      181 aagatccaga tgaagaaaat aaaaatgaca atggagaaat caatatagat aatttaaata
      241 cacctaaaat gactccagat atagaagaaa aaattaaaag agatttaatc gccaatcctc
      301 cacaaatatt caaagaaaat aacgcaagca agccttatca tttgccacaa acaggctatg
      361 atataaagct tgatgagagt tcaacgcaaa attagcgaac tatatcataa ttttgcggaa
      421 tttttgcctt gaaaatatcg gagttgattt ttggattttt aatttgattg tttagattga
      481 ttataacatc attttcaaat tcatctttat aggatatgct ttgaatttgc tcttgattga
      541 gtttaattgt ataatttata ttatcatatt ttgctacaag tttatctttg tctataagac
      601 ttgctttttt gaaaatttca ttaagatttg gaatgttatc aagatgagag aaaatgactt
      661 gttctagatc gtgctctact atggttactt gatttttgtt gatataaatc tcttttttac
      721 taggagtatc ataactccaa tatgcttgat ctttactcag tataaaatgc ccagaataag
      781 aaagtgtaga gtttttggat ttcactattt gggtaaaatt gcttgaaaag gtattaaaat
      841 taagatcaag ggcaaaaagt tgtcctataa aaataaaaaa tatcaagaat gtttttttca
      901 tttattttcc ttaaaaaaat atatttttta tgtcattcta gctaatttta attaaataat
      961 cgttataatg atagtttgaa aaatttataa aggtttaaaa atgtttttaa atactttaaa
     1021 agccgtgttt ggcacaaaaa atgatcgtga aattaagaaa tatttcaagc gtgtagcaca
     1081 aatcaatgct ttagaaggca actatcaaaa tttaagcgat gatgaattaa aagccgaatt
     1141 tgcaaaattt aaagagcaaa ttttaagcgg agaaaaaaac gaaaatgatg ttttaaatga
     1201 tgtttttgct atagtcagag agacaggtaa gagaacttta aatatgcgtc attttgatgt
     1261 gcagttaatc ggtggtatgg ttttgcacga tggaaaaatc gcagaaatga aaacaggaga
     1321 aggtaaaact cttgtagcaa ccttacctgt tgttttaaat gccatgagtg gcaaaggcgt
     1381 acatgtcgtt acagtaaatg attatctagc caaaagagat gctgagcaaa tgagtgcgat
     1441 ttataatttt ttaggtttta gtgttggcgt ggtgctttct tctcaaaata gtgatataga
     1501 acacaagcaa gcttatgatt gtgatattac ttatggaacc aataatgagt ttggttttga
     1561 ttatttgcgt gataatatga aattttcaaa agctgaaaaa gttcaaagag agcataattt
     1621 tgttatcgta gatgaagtag atagtatttt aattgatgag gcaagaactc cgcttattat
     1681 cagtggtcct acaaatcgta ctttagatgg ttatattaaa gccaatgaag tagctaaaca
     1741 aatgcaaaaa ggtgaagcag ttttaccccc tgcaaaacct gagggtgatt ttgtagtaga
     1801 tgagaaaaat cgtaatattt taattacaga agcaggtatt gctaaggctg aaaaactttt
     1861 tggcgtagaa aatttataca gtcttgataa tgctatctta gctcatcagc ttgatcaagc
     1921 cttaaaagca cataatcttt ttgaaaaaga tgtgcattat gttttaagaa ataatgaagt
     1981 tatcatcgtt gacgaattta cagggcgttt aagcgaagga cgtcgtttta gcgaaggatt
     2041 gcatcaagct ttagaagcta aagaaaatgt aaaaattcaa gaagaaagcc aaactctagc
     2101 agatattact tttcaaaatt attttagaat gtacaataaa cttgcaggta tgacaggaac
     2161 tgcacaaaca gaagcgactg aattttctca aatttatagt ttagatgtta tttctatacc
     2221 gacaaatatt cctattaaaa gacaagataa agatgatctt atctataaaa ctcaaaatga
     2281 aaaattcaaa gctgtaattg aagagattaa aaaagccaat gctaaaggtc agcctgtact
     2341 tgtaggaacc gcaagtatag agcgcagtga agtttttcac aatatgcttg taaaagagaa
     2401 aatccctcat catgttttaa atgctaaaaa tcacgagcaa gaagctttga ttatccaaga
     2461 tgcaggtaaa aaaggtgctg taactatcgc tacaaatatg gcaggtcgtg gtgtagatat
     2521 aaaaatcgat gatgagatta gggctttggg tgggctttat atcatcggta cagaaagaca
     2581 tgaaagccgc cgtattgata atcaacttcg tggtcgtgca ggaaggcagg gtgatcctgg
     2641 aataagtcgt ttttatctaa gtttagaaga taatctttta agaatttttg gtggggatcg
     2701 tattaaaagt attatggatc gcttgggcat agaagagggc gaaagcatag aatcaagaat
     2761 cgttacaaga gcagttgaaa atgcgcaaaa aaaagttgaa agcttgcatt ttgaaagcag
     2821 aaagcatttg ttagaatacg atgatgtagc aaatgaacaa agaaaaacta tttatcgtta
     2881 tcgtaatgag cttttagatg aaaactatga tattagagct aaaatttctc aaaatatcgc
     2941 tgaatatagc gcaaatgtaa tgaatgatta tatgcttgac gaaagcggtt ctaatgtaaa
     3001 ttttgaaaat ttgaaagcaa aaattttgta tgaatgttca actcagatta gtgaaaaaga
     3061 ttttgagaat ttaagcgtca ttgaaatgca agacaagcta agtcaaattc ttgaaaattc
     3121 ttataatgaa aagatgttaa gacttgagat taaagaattg cgtaatatag agcgtatttt
     3181 atatttgcaa gttttggata atgcttggag agagcatttg tatcaaatgg atattttaaa
     3241 aacaggaata ggacttcgtg gatacaatca aaaagatcct cttgtggaat ataagaaaga
     3301 aagttataat cttttcttgg agttggtcaa tcgtattaaa tttgatagta ttaaactact
     3361 ttttagcgtg caatttaatc aagaagaggc gcaaaattta gaaaataaag ccaatgaaga
     3421 aaatgaaaag ctacttcaaa gctcagtaga aatgggcgca agcgaagata atcttggcga
     3481 agctgaattt aaaaaagttc cacgcaatgc tccttgtcct tgcggaagtg gaaaaaaatt
     3541 taaagaatgc catggaaaaa gtggtcctaa gcaaggaatt ttagcttgaa taaaagcgtt
     3601 ttaaaatatt tactttttaa gtatttaaga tttgataaag agcaaccctt tatcaatctt
     3661 tctatgcttt tggccttttt aggagtttgt gtaggacttt gcgttttgct tgtagctatg
     3721 gcaattatga atggttttga taaagaattt gaaaaacgct tttttgtgat gaattatcct
     3781 attactattt tgcctaaatt ctacgctcct gtaaatgatg aatttataga tgagttaaga
     3841 aaaacatttc caaatttgtt atttagccct tatttaagca ctcaagttgt tgtaaaggga
     3901 gataatcgtt ttgaaggtgg tgtgcttttt ggcgttaatt ttaatgatga aaaaaaaata
     3961 aacgaagtgg ttgctaaagc tttaaaggat gagaatttaa gtggttttga tatacttgta
     4021 ggatcagcac ttactgatga atttggtttg cataaaaatg acaaactttc acttattttt
     4081 tcaaatctta atcctagtgg attttcttta gtaccgcaaa ctaaacgttt tgatgttaaa
     4141 gcgcgtttta cttcagggct tgcattttat gataaagctt atatgtacac agatgttgat
     4201 gcattgaaaa aagtacttgg aatacctaaa aatccaaatt atgatggaat tcatgtatat
     4261 agcgataatg cttttaagga tgttgaaaaa attaaatctt atttaaaaga tgattatgct
     4321 gtggtgggtt ggtgggagca aaataaaaat tttttttcag ccttagaact tgaaaaaaga
     4381 gtgcttttta tagtgttgat gcttattatt ttggttgcaa gtttaaatat agtaagttct
     4441 ttattgatga tagtaatgaa tcgtcgcagt gaaatagcac ttttacttgc tctaggtgca
     4501 agcaaaaatg aggtaaaaaa gagttttttt gccttaggta tgcttattgg tggtggtggt
     4561 atgatagtgg gtgtggtact tgcatttttt gctttatggc ttttgggaaa ttttgatatt
     4621 gtaactttac ctgttgatgt ttatggaacc agtaaattac cacttgattt atctttaatg
     4681 gatttttctt taaccattgt gggtgcttta ataatcatag ctttatcatc tttttatcct
     4741 gcaaaaaaag caactcaaat taatatttta gatactttaa gaaatgaata aattgtaatt
     4801 ttggagattt ttattgtctt tgtttactca aaaaaataag aattttaaac ctttaaaacc
     4861 tctatcaaag tcaaaaataa tcactaattt aattcttttg attttatttt taatattgtt
     4921 ttgttattgt agttttagta taagtgctta tcattttgat tttagcgcaa ttgcaaccta
     4981 taaagaaaaa tttcttcaag gttttttaaa tactttaata atcagttttt tttctttatt
     5041 gttgagtata attttgggtg gagttttttg tgctttttct ttaagttcga ttgttttttt
     5101 aagattttta tctacatttt acatagagct tgtcagagga acccctttac tagtgcaggt
     5161 attattgata tattatatca ttgcaaataa tttaggactt gataatcgat atgtggctgg
     5221 agttattatt ttatcatgtt tttctgctgc ttacttagct gaaatattta gagctggaat
     5281 tttaagtatt tctatatctc agcttgagag cgctagggct ttagggttaa aagagatgca
     5341 ggtttttgcg tatgtaattt ttccccaagc tttaaaaaat attttagcac cgctgagtgg
     5401 acaatttgca aatttaatta aagatagttc cttattaagc gttattgctg taaatgaatt
     5461 aacccaaagt gcgcaagaga taaattctta tacttttgct actcttgaag cttatgtaat
     5521 tttggctatt acatatcttg ttttgacttt acctataagt atattttctc gttatttgga
     5581 gagaaaatgc caaaaatgat ttaaaaaagc ttgacaaata gagctaattt tggcataatc
     5641 acatttttat ttcagaaaat gtctcgttag ctcagccggt agagcatctc ccttttaagg
     5701 agggggccgt tggttcgaat ccaacacggg acaccattat a
//
LOCUS       DAQSLY010000101         5680 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.102, whole genome shotgun sequence.
ACCESSION   DAQSLY010000101 DAQSLY010000000
VERSION     DAQSLY010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.102"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            15..2267
                     /gene="flgL"
                     /locus_tag="R2H98_001453"
     CDS             15..2267
                     /gene="flgL"
                     /locus_tag="R2H98_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEE9024315.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLTQNPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYLDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVNKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2377..5217
                     /locus_tag="R2H98_001454"
     CDS             2377..5217
                     /locus_tag="R2H98_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEE9024316.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKKYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKGETNNLGQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(5303..5575)
                     /gene="rpsO"
                     /locus_tag="R2H98_001455"
     CDS             complement(5303..5575)
                     /gene="rpsO"
                     /locus_tag="R2H98_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEE9024317.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
BASE COUNT         2175 a          793 c          958 g         1754 t
ORIGIN      
        1 ctttagagga aaaaatgaga attacaaata aacttaactt tacaaatagt gtgaataatt
       61 ctatgggcgg tcaaagcgct ttatatcaga tatctcaaca acttgcttca ggtttaaaaa
      121 ttcaaaattc atatgaagat gcaagcactt atatagataa tacgcgtctt gaatatgaaa
      181 ttaaaacatt agagcaagta aaagaatcaa ctagtagagc tcaagaaatg actcaaaata
      241 gcatgaaagc tttacaagac atggttaaac ttcttgaaga ttttaaagtt aaagtaactc
      301 aagctgcaag cgatagcaat tctcaaacct caagagaggc tatagcaaaa gaactagaac
      361 gcataaaaga aagtatagtt cagcttgcaa ataccagtgt taatggtcag tatctttttg
      421 caggttctca agttgcaaac aaaccttttg attctaacgg aaattattat ggagataaaa
      481 ataatattaa tgtagtaact ggagctggaa ctgaaagccc gtacaatata ccaggctggg
      541 atttattttt taaagcggat ggagattata aaaaacaaat aagcaccaat gttagtttta
      601 cagataatcg ttgggatctt actcaaaatc ctgataaaac taaatatctc acaggagatt
      661 ctaaatggca acagcttatc ggacaaggtt atgtaaaaga taatagctta gatgctgaca
      721 aagacttcga atatgatgat agtaaactag attttcctcc aacaactctt tatgttcaag
      781 gaaccaagcc tgatggaaca agttttaaaa gtgctgtact cgtcaaaccc gaagatactt
      841 tagaagatgt aatggaaaat attggagctc tttatggtaa tactccaaat aataaagtag
      901 tagaagtaag tatgaatgat agtggtcaaa ttcaaattac agatctaaag caaggtaata
      961 ataaactcga ttttcatgct gtagctttca caccacaagc tgataccaaa gatgaactta
     1021 aaaatattat tgaagctgct aatcaagagg gtatttcaat gaatgaagtt acaaataggg
     1081 ttatgcaagc tgctacggct gctcctagta atggagatat aacaaaatta aacaaccctg
     1141 taactgtaac aatcaacaat caacaattca caatcgattt aaaacaaact gattttatca
     1201 aaagtaaaat gacagataca gatggaaatg ctgctaatgg agctgattac gataatgtgt
     1261 attttgaaaa aaatggcaat actgtttatg gtaatgtttc tcaagttatc aaaggaagca
     1321 atgcttatgc cactgattca accaaactta gcgaggtaat ggcaggagat agcctaaatg
     1381 gtactacttt aaatttaaaa gtcaattcca aaggtggaaa ttcttacgat gttactataa
     1441 atttacaaac ttcaactgta agctatcttg atcctaataa tccaggtcaa accataagct
     1501 ttcctattat gcatactaat cctgcaactg gaaatagtgg ggttgttaca ggatcaaatg
     1561 atattactta tggtcaaatt aatgatatta taggtatgtt tgctgcagat aaaattccta
     1621 caacaaccat acaagccaat aatggtcaaa ttaataatgc agattatacc caaatacaac
     1681 aactcatgaa agattcacaa gctactgttg atgtaagtat ggattataaa ggtcgtatta
     1741 gtgttactga taaactttct tcaggcacta atatagaaat ttctcttagt gattctcaaa
     1801 gtggccaatt tccagcacct ccttttacca caacttctac tgtacaaaat ggtccaaatt
     1861 ttagttttag cgcgaataat tctttaacta tagatgaacc aaatgtggat attattaaag
     1921 atttagattc aatgattgat gctgttttaa aaggcaatat gagagcagac tccgaaagtg
     1981 aaaaccctag aaatacaggt atgcaaggag ctttagaaag acttgatcat ttagcagatc
     2041 atgttaacaa gcttaataca actatgggag catatcataa tactatcgaa ggtgttaata
     2101 cacgcacatc ctttttaagc gttaatgtcc aaagtataaa atcaaatgtg attgatgtag
     2161 attatggtga ggcaatgatg aatttaatgc aagttcaact tgcatatcaa gcttctctta
     2221 aagctagcac aacaatttct caacttagct tattaaatta tatgtaaaat tttttatggt
     2281 ataatttggc tttgatttta ttttcaagga aagaatatta aaaaagaagc catttttacc
     2341 agctccacgc ttgttatttt ttatctttgt ctttgtatgc tagcacctgg catgggagaa
     2401 tgggtttaca aggctaattt atttttattt ggagaatttg ggtattatta tccattttct
     2461 ttgcttatat taaattatct ctactataaa aaaaaatata aaatagaaaa ttttaagcgt
     2521 agggagcttt ttggtttttc tttggccttt ttttctacct tgcttttatt ttctgtcttt
     2581 tatagagagt ttgggtatat tttagaaatt gtatatggat ttttttctat aatcttaggg
     2641 cgtacaggga gtggaatttt tgctcttttg cttttgctat tttctttggt tttattgttt
     2701 ccaaaatttg caaaagaaat tttaaaaata gaattagatt ttacttattt attaaaagta
     2761 gagcaagctt ttaaatcttt acttatgcgt gtatttggtg gagaaaacga gaaagaagat
     2821 gtaggtaaat cagaacctat agctccaaaa ttaaatattt tgcaagatag tatttatgga
     2881 aatttacaaa taaacaaaaa aggggaaacc aataacttag gacagataat taaagatagc
     2941 aatatcaatg caagtaaaaa ttcaattacc acggccaagg aaaattttga aaaactaaaa
     3001 aatcaaattt tagatgaaac catagagatt gataaacaaa gtttaaaaga atcaagaagt
     3061 tttgttcatg agcattctca acaagtgcga aatttcgcac aaaaggctag taaaatgagc
     3121 attagtcttg atgaagattt taattttatt tcagaagaag aggtagatat gattcctgaa
     3181 cgttttttaa aacctaaaaa acttgaagat ataaagcaaa tagatacaaa taaaaattta
     3241 gatgagccaa gttataaacg taaaaatatt gaaattccag tttctaatca agaagttaaa
     3301 ccaaaaattt ttacaaaaga gcttgaactt agagagaatt tgataaaaaa agaaaaacta
     3361 gaacaagaat acaaagccta tcaaaatgaa attttagaaa ataaagtaaa acaagaaatt
     3421 aaaaaattag aagaatatga tgcgataaat tcaagcgata ttatagaagg gaataaatat
     3481 agttttaata gcccaaaaac aattaaaaca gaaacagaag aatcagacaa aataaatgaa
     3541 aataaaaatc tagataaagc agacaatatc tttgaatttg ctcccattgt agaagagtta
     3601 aatcatcctt atatagaacc tactcctata aaaaatataa atgaaatagt tatagaagaa
     3661 aaaaatacac tcgattttat ccaaaataca gaaactaaaa tcgataatga aaaaacaaat
     3721 gatcaagaaa ttaaacttca aaaagcagtt ttagccaaag aaattgctat taaccaagct
     3781 ttattgcgtg aaatagagca gggcgaagta gaaaaaccaa aagatttcac cttgccgcca
     3841 ttagattttt tagctaatcc aaaagaacac aaacaagaaa tcaatgaaag tgaaatagat
     3901 aaaaaaattt ataatcttct tgaaaagttg cgtcgtttta aaataggcgg cgatgttata
     3961 agcacttatg ttggtcctgt ggtaactact tttgaatttc gtcctagtgc agatgtgaaa
     4021 gtaagtcgta ttttaaattt acaagatgat ttaactatgg ctttaatggc aaaatcaatc
     4081 cgtattcaag ctccaatacc aggaaaagat gttgtaggta tagaagttcc aaatgatgaa
     4141 attcaaacca tttatttaag agaaatttta caaagtgaag tttttaaaaa cgctaaaagt
     4201 cctttaacca tagctttagg taaagatata gtaggcaatg cttttgtaac cgatcttaaa
     4261 aaacttccgc atttactcat cgcaggaacg acaggtagtg gtaaaagtgt ggggataaat
     4321 tctatgcttt taagtctttt atatcgtaac tctccaaaaa ccttgcgttt gatgatgata
     4381 gatcctaaga tgcttgaatt tagcatttat aatgacattc ctcatctttt aactcctgtt
     4441 atcacagatc caaaaaaagc agtcaatgcg ctttcaaata tggtagctga aatggaaaga
     4501 cgctatcgct taatggctga tgcaaaaacc aaaaatatag aaaattacaa tgaaaaaatg
     4561 aaagaattag gcggagaaga acttcctttt attgtagtaa ttatcgatga acttgctgat
     4621 ttgatgatga ctgcgggtaa agatgtagaa ttttatatag gaagacttgc gcaaatggca
     4681 agagcaagtg gaatccactt gattgtagct acacaacgac cttctgttga tgttgtaaca
     4741 ggactaatta aagcgaattt accaagtaga atttcttata aagtagggca aaaaattgac
     4801 tctaaagtta ttttagatgc tatgggtgct gaaagtttac ttggaagagg ggattgttta
     4861 tttactcctc ctggaacaag ctctatagtg cgtttgcatg cgccttttgc aagcgaattt
     4921 gaaatagaaa aaatcgtgga ttttctaaag gatcaacaaa gcgtagaata tgatgaaagc
     4981 tttttaaagg atcagcaaag cgtaggtgtt acaacaaatg aaagctttga tggggaagta
     5041 gatgagcttt atgaagaagc taaaagagta atcttagaag atggaaaaac aagcatttct
     5101 tatttacaac gccgtttaaa aatcggctat aaccgctctg caaatattat tgaacaactt
     5161 acgcaaaacg ggattttaag cgaacctgat gccaaaggac aaagggaaat cttgtaagat
     5221 ttttcttgtg tttttgatat ataaaactga ttacaaaaga agaaatttaa aagacaaaag
     5281 ccccgtaaaa agggcttaaa aattatttat ctctaagatt taattcagta attaatttac
     5341 tataagaatt ataatctttt cttttaagat aagataaaag tctttttctt tgacctacaa
     5401 gttttagaag tcctaatctt gatgaaaagt cttttttgta gatttttaaa tgttctgtaa
     5461 gttctgcaat tcttgcagtt aaaagagcta cttgaacttc tgttgaacca gtatcacctg
     5521 gttttttagc gaatttcgca actatttctg cttttttggc cgaatctaaa gccatgatag
     5581 acctcctgat tggtaaaata ataaaattaa agaattgtaa ttttatctta aaaagcaaaa
     5641 aataaactga atttatcttt tttagaaggt tttgtcaaaa
//
LOCUS       DAQSLY010000102         5661 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.103, whole genome shotgun sequence.
ACCESSION   DAQSLY010000102 DAQSLY010000000
VERSION     DAQSLY010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.103"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1117
                     /locus_tag="R2H98_001456"
     CDS             <1..1117
                     /locus_tag="R2H98_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024318.1"
                     /translation="KIIGHLSVNILIFVELVLVAPFFTIMFYCVYVVFFIYKILTFIL
                     KSFYPLDINKFIIFWRIKFNKIKRKLIVSGRKMLDFTLWSDCVLLQVYRNTSNHHTNF
                     LKILNFTILMISLYAFMGFVFSKTINFILSFNSVSIIIASYIILLVFALMLVNVKKQL
                     YQYGVILIFMLCGAFTISMILFLSSEYISIFCFLIYFLGVLIFYLFFICKIKLFIFLV
                     RFFAYMIFIATIITKPQFINPFTGVFSSDKLYESQFEKSLNDLNASAIVNLASILQND
                     FNLHLKDQNISFTELNSAKALIIANKENLLKLNDANLNITKEVLGEKYTELLKIINQD
                     KITENTIKSTSVLYSIILLLCIFSLQKTARKNSIVPS"
     gene            complement(1147..1848)
                     /locus_tag="R2H98_001457"
     CDS             complement(1147..1848)
                     /locus_tag="R2H98_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEE9024319.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEISYNSPNIID
                     RLSDPYGNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1845..3047)
                     /locus_tag="R2H98_001458"
     CDS             complement(1845..3047)
                     /locus_tag="R2H98_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEE9024320.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESASHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINVRL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            3152..4501
                     /locus_tag="R2H98_001459"
     CDS             3152..4501
                     /locus_tag="R2H98_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEE9024321.1"
                     /translation="MQTLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKNTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINSYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(4525..5568)
                     /locus_tag="R2H98_001460"
     CDS             complement(4525..5568)
                     /locus_tag="R2H98_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEE9024322.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPKLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         2029 a          879 c          889 g         1864 t
ORIGIN      
        1 aaaaataatt ggacatttat ctgtaaatat attaatattt gttgagttag ttttggtcgc
       61 tccatttttt acaataatgt tttattgtgt ttatgttgta ttttttatat ataaaatttt
      121 gacatttatt ctaaaatcat tttatccttt agatataaat aaatttataa tcttttggag
      181 gataaaattt aataaaatta aaagaaaatt gatagtttcc ggaagaaaga tgctagattt
      241 tactttgtgg tccgattgtg ttttgttaca agtttatagg aatactagca atcaccatac
      301 aaatttctta aaaattttaa attttacaat tttaatgatt tcattgtatg cttttatggg
      361 ttttgtattt tcaaaaacca taaattttat attatccttt aattcagtat cgataattat
      421 agcaagctat attattttgc ttgtatttgc tttaatgctt gttaatgtta aaaaacaatt
      481 gtatcaatat ggcgttattt tgatttttat gctttgtggt gcttttacaa tatctatgat
      541 attgttttta tcatcagagt atatttcaat tttttgcttt ttgatttatt ttttaggcgt
      601 attgattttt tatctttttt ttatttgtaa aattaaatta tttatttttc ttgtgagatt
      661 ttttgcttat atgattttta ttgcaacgat tataacaaaa ccacaattta taaatccttt
      721 tacaggtgta ttttcatcag ataagcttta tgaaagtcaa tttgaaaaaa gtttaaatga
      781 tttaaatgcg agtgctattg taaatctagc aagcatattg caaaatgatt ttaatctcca
      841 tttaaaagat caaaatattt cttttacaga gttaaattca gctaaagctt tgataatagc
      901 aaataaagaa aatcttttaa aattaaacga tgcgaattta aatataacca aggaagtttt
      961 aggagaaaaa tatacagaac ttttaaagat tataaatcaa gacaagatta cagaaaatac
     1021 cataaaatcc actagtgttt tatatagcat tatacttttg ctttgtatat tctcactcca
     1081 aaaaaccgca cgaaaaaatt ccatagtgcc aagctaagcc ttaaagctta gcttgaaatt
     1141 ttatcatcag tcctttaagt agtattctat agtagaaacc actcttatgg ttttgatata
     1201 aggggtgttt ttatctctgt tgctgatgct aaattgtcct tgagaagcct tttttatctt
     1261 gcctagatgg ctgtttgaat cttgtgcgaa ttttatcgct gcatttctag cattgagtgt
     1321 tgcttcttct atcatttgag gttttatctc atttagcttg gtgtaaaggt attctatgtc
     1381 ataatcatcg atttttgtta ctatgccaaa ttttgcaaga cttgaaatgt tttctagtat
     1441 gctttttcca agctttacat tttgagtata gatgagtaaa ttcgcagtgc ctatgtatcg
     1501 gtatgtagct tgagtgtcgt tgccataagg atcgcttaaa cgatctatga tgtttggcga
     1561 gttgtagctg atctcatctt cttttacgcc ttgttctttt aaaaatttga tgatattttc
     1621 tttatcttgc tctagttctt cgtataaatt tgtaagattg ttatttgatc ttgtgaattt
     1681 tataggaagt atcaaagtat ccgcttcgac ttctttttga cttaaaccct ttacacttac
     1741 acttctttca agtgttttaa aatcacttaa agccttgtta aatccaaaag ctagaatcaa
     1801 acttgccaaa actatggcta aagccataaa gatattattt gttttcattt tttctccttt
     1861 attttgatta gaaaatatat catatttgca accaatacgc aagcacacat tacaaaagca
     1921 aggattatcg gcgtatttgc gttaatagcc ccaaccacaa aagaaataag ccctgcaaaa
     1981 ccaaattgca ccgttccaag caccgcagaa gcagttccgc tatgttcttt aaaccttgcc
     2041 atagccaaag tcgtggtatt gggtgcgatg aaaccaagca tagcgatact tgtaaaaata
     2101 ctaagttcaa aaagcaagaa atttgggtga aaaaaggcat ttgcaagtaa aatcacagtc
     2161 gatataaaca ttatcatcaa agcttttgcc aaaatttttt cgctttcgta ttttaaaacc
     2221 aatctcacat tgatatttgc acagatgaca aaacctaaag catttgcccc aaaaagcaag
     2281 gcaaattttt gctcacttaa gctaaaaaac tgcgtaaaaa caaagcttga tcctgtgata
     2341 taagcaaaca tcgccgccaa agcaaaagaa gcacatagta tataaaccaa aaagcgttta
     2401 tcgcttaaaa caaatttgta gcttttcatc gcttcatgat gggaaaattt tttgttttta
     2461 agatgagatg cggactcttt taaaccaaaa agtatcatca aaaaaagtaa aattcctaaa
     2521 gcaaacaaag tcgcaaaaat actatgccat gaaaaatact ctagcaaaat tcccccaaaa
     2581 gttggcgaaa gcataggagc aagagaacta aaaaccatca tcaaagcaaa aatccctgca
     2641 gcttctttga tctcaaacaa gtcattgaca atagcccttg cgataaccac acctgcacaa
     2701 cccccaagtg cttcaaaaaa tctcaaagcg ataaaagcat aaatatcatc gataatcaca
     2761 caaaacaaac tcgaaacgat gaagaaaaat atccccacca aagctggaat tttacgccca
     2821 aaaatatcac ttaaaggccc atatataagc tgtcctaaag caaaagcgat aaaaaaactt
     2881 gcgatactaa gttgggttaa aaaagaatta gtttgaaaac tttgctccac atgagaaagt
     2941 gcaggcaaat acatatctgt agaaagtggt gctatgcttg acatcaaagc aaggataacg
     3001 atgagtttaa atttagcaaa gccgtgaatt ttggtgtgtt tttgcatttg taatcctaat
     3061 tattctaaaa gaatgatttt aacgagtcaa tcttagaata atctttgttt ttctatgtta
     3121 aatttagaga aaaattctaa ggaaattttt tatgcaaact ttaaaccaaa atgaacaaat
     3181 caaatgccca agttgtggaa gttttatcga tatcagtact gctttatatg ctcaaatttt
     3241 agataaagcc aagcaagaaa tgctaaaaca aaaaaaagaa tttgatgatg aggtaaatgc
     3301 taaaagagct gaatatacca aagctttaaa tgatttaaaa actcaaaaga tagaacaaga
     3361 aaaactcata aacgagcaag taagccaaaa gcttctttta gaaaagcaaa aatttgaaca
     3421 agaacttctt atacaaaagc aaaatttcca aaaagaattc agcgagaaat ttaacaaaga
     3481 gcatgaaaat gaaatgaaaa tcatgcaaga agaactcgag aaaaaaagca aagagcttag
     3541 cgagttttta agcataaagg ctgaaaatga aaggctaaaa agagagcaaa aagaaaatga
     3601 agaaagattg aaatttcaag ccaaagaaga ggcttttaaa gaatttaaag aacaagaaag
     3661 caaaaatttg gaatttgaaa gagaaaaaat gcgtcttgaa tttcaaaaaa atactcaaga
     3721 acaagatctt aagtacaaag aactagaaac gaattttaaa agtgtagctc aaaagctaga
     3781 agacgcacaa cgcaggatag aacaaggctc acagcaactc caaggcgaag cagctgaact
     3841 actcatagaa gaatacatac aaagtgagta tttaagcgat gaagtaaaag aagtgccaaa
     3901 aggcgtaaat ggagccgatt gtctgcatat agtaaaggat aattttggaa atatttgcgg
     3961 aagtatttta tatgagagca aacgcactaa agaatttaat aaagaatggc ttgataagct
     4021 taagctagac agcatagctg caaaaagtga tatagcggtt ttgattacaa aaactatgcc
     4081 aaaagataaa gaaaaaacgc attttaaaga aggaattttg atctgtactt ttaatgaatt
     4141 caaaggtgtt ttagcagtgc ttagagaaag cattataaat tcttataaac tcaaaaatgc
     4201 cctgcaaaac aaagatgaaa aaaatcacat tttatacgaa tacttaaatt ccaaggaatt
     4261 taacacgcaa atcactttta tactcaaaac ttaccaaaat atgaaagaag agttagaagc
     4321 tgaaaaaagg gctttgcaaa atatatggaa aaaaagagaa agagctatag aaaatctaag
     4381 ttttaattcc actgccatag tgagttcttt aaacgcgata tttagcgact tacaaggtgg
     4441 aaatttgata ggcgaagaag ggattaaaag tcttgaaaat ttagccaaag atgaggatta
     4501 attttgggct aagcccaaaa ttaatcattc tcctgggaag tgatttggat ttttccaagg
     4561 tccgtatttt acttttatgt attctttagg gtctaaattt tgttgtggtg aagcaaaata
     4621 ctcaggtttt aatgatgggg atttgctata agctgtatca agtcctgcac gattttctgt
     4681 agtggttata ggcattctta caaaacctgt attgacataa gctgctatat ccagtgcatc
     4741 ttcatcgctt aatataggat tatctgcact cgcaccaaaa ggcatggctg attttaaaaa
     4801 tcttgctaaa aatggtatca tagccatgtg tccaccatca ggatagataa gtaaagatgg
     4861 atataaatgt ccgctacctt gttcgtaatt atcatttttt accccaagtc ctctttcgcc
     4921 atggcaagca acgcaatttt cttcaaagag tttttttcca cgcacagggt cagctgggcg
     4981 atttggaaaa ttcatcttag cgaaaaaatc tccttcaagc tttacgccgt ctttgatgcc
     5041 ataagcttct tttagccatt taaaataagc taaaattgct ttcatttctt tagaatcatt
     5101 aggaaatcta tgagagtcag ttccacccat tccgcgaatt ctatcttcaa cagagatgat
     5161 tttcatcgtt tctatatcaa gttttggata attgtttagg acatttaaaa atggaataac
     5221 atattttttt gtccctggca aaccattgcc gtcattgtcc atgtgacagg aaatacaatt
     5281 tacttcgttg cttgtctttt ttagcttgct atagggtcct agagtacttt ctgtcttgct
     5341 taaaagctct atgccataac ggattaaatc cccttgctta ccttttggaa catcattgat
     5401 gcttaaattt ttatttggcc attcttgcac aggtcttttg gaaagttcct taaaatactc
     5461 tactccttcc ttgtcgctta attcttctcc tactttgtaa tcactcacgc ttttagcact
     5521 aagactcaaa ctaagacata aaccaagcaa taaaatgtgt tttttcatga ttttcctcct
     5581 ttttatttgc agttcaaatt gattttagtg tattttttct taaatattaa gcataataag
     5641 aataatttaa ataaaattaa a
//
LOCUS       DAQSLY010000103         5474 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.104, whole genome shotgun sequence.
ACCESSION   DAQSLY010000103 DAQSLY010000000
VERSION     DAQSLY010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5474
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.104"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1612
                     /locus_tag="R2H98_001461"
     CDS             <1..1612
                     /locus_tag="R2H98_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEE9024323.1"
                     /translation="INSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEI
                     FNAKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLS
                     TENILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSL
                     MKELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKL
                     SANLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKL
                     KNNSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVEL
                     TLSELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEA
                     ARAGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKE
                     TSSKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVK
                     DLSCEINNISQNVLNGASKLSEKLSSFQ"
     gene            1718..1885
                     /gene="dba"
                     /locus_tag="R2H98_001462"
     CDS             1718..1885
                     /gene="dba"
                     /locus_tag="R2H98_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEE9024324.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            1897..3423
                     /gene="dsbI"
                     /locus_tag="R2H98_001463"
     CDS             1897..3423
                     /gene="dsbI"
                     /locus_tag="R2H98_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEE9024325.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(3444..4118)
                     /gene="queC"
                     /locus_tag="R2H98_001464"
     CDS             complement(3444..4118)
                     /gene="queC"
                     /locus_tag="R2H98_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEE9024326.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            4195..5421
                     /locus_tag="R2H98_001465"
     CDS             4195..5421
                     /locus_tag="R2H98_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEE9024327.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMYEFFKENPTIDG
                     VNFFEICESLREYFKI"
BASE COUNT         1980 a          840 c          858 g         1796 t
ORIGIN      
        1 aatcaattct atttttcaaa atagttttaa ttttatcaac tacgatccaa gtgtgcaagc
       61 gataaaaaaa atgcaagaaa actttacaaa acttaaaact tttgggattg acataaacaa
      121 agcagaagaa atttttaatg ccaaactaat ccagcttaat tattttaaat ccgcaaattc
      181 catagcagta aattcaaaac tttatttatt tgaactagct aaaaattatt ttgaagaatt
      241 ggaacaaaac catgaaacaa ataaaaacaa ctataaaaca atgagttcta tgttaagcgt
      301 tctttcaact gaaaatattt tacaaaaaac aacactaaat caactcaaca atcttatgaa
      361 agaaatcaaa aatgatacaa aaagtgaaaa tttacaactt tttttaaaac actataaaat
      421 gattgtaaag caaatttcta ttatgcaaga taattcttct atttatgaga ataattctct
      481 catgaaagag ttaaaacaac ttaacacttt tacccaaaat actatagaac aatctaattt
      541 atttaaattt tatatcgctt tagcagtatt tggaatcact cttgtattat ttgtattttt
      601 tattttatta acactaaaaa aagtcatcat gccaattcat actttagaaa aactaagcgc
      661 taatttagct agcaaagaag ccaatctaca ctctcgttta aatatagatc caaaaagtga
      721 gcttggacaa agtgctcaat atattaattc atttatttcc accgttcaaa actcaatcat
      781 agaagccata gaaaatgcta aatcaagtca tcaaaattca caaaaactca aaaacaactc
      841 tatgatgctt gaaaacagct ctaattcgca acatgaacaa attcaaggag ttaaagaaat
      901 cactcatgtt ttagatgatc atatcaatct tgcgggaaat ttagcacaag aaagtataga
      961 aaatatgcaa gatatgcaca tactaatgga taaagtagaa cttactctat ctgaacttgt
     1021 aaatttaata aatgaaaaca atgaaaaaga acaaaatata gtagccaata tggacaatct
     1081 aacccaaagt gcggataata ttatagaaat cacaaactcc attaaagaca tagctgatca
     1141 aactaattta cttgccctaa atgcagctat cgaagctgca agagcaggcg aacatgggcg
     1201 tggatttgct gttgtagccg atgaagttgg acagcttgct gataaaacaa gtaaatctct
     1261 tttaaacatc aatgctactg ttaatactat agtccaacaa atcaatgaca acaaagcctt
     1321 aatggatctt atccatgatt ctatgaaaga aacctcttca aaaaccaatg atttacaaca
     1381 agaacttgta aattctatgc ataaattgga aagctctata gaatcaaccc aaaccatgaa
     1441 agataaaagc atggaagtaa aagataaaat gcttatctta ggaacaaata tagataaagt
     1501 taacgaactt gcaaattctg ttaaagattt atcatgtgaa atcaataata tctctcaaaa
     1561 tgttctaaat ggtgcctcta aactctccga aaaattaagt agctttcagt aacttttttc
     1621 acgttaattt aacttaacgt gaaatttcaa taaaaatttt atttttaatt tatgtttttc
     1681 aagtaaaatt agcagttttt atttcaaagg agatactatg gagtttcttg aacttttatt
     1741 agttttaatc gccttgatac tgattatcaa aaaaccagaa aaagaaaatt tggcttttgg
     1801 tttggtaatg gtagcttggc ttttaatggt ttttttctat gttggccaca aaacaggcgc
     1861 actattaaca ataatgaatc tgtaaggaag ggctaaatga acgaaatcaa taaaacaaaa
     1921 aatttctaca cactaatgtg tttagcaggc tttttgatta tactcttgcc tgtaggtatt
     1981 gcaaatttga tatttggtta tatgttgggc gatagtcctt gcacgctttg ctggggacaa
     2041 agagaagcaa tgatctttat cggtgtaatg gcgcttttca ttgttcgtta tggtatgaaa
     2101 ggtaaatacc ttgctgctct tttaatcatg acagcagtag ggctttatca atcttttgct
     2161 cactatggta atcacgctca tagagattta gatcaaggtt ttggtttagc agtttttggt
     2221 atccatactt atttttgggc tgaagtagta ttttgggctg ttgtattgct cttaggtgtg
     2281 atttttgctt ttgctcctaa atttaatgct tttgaagctg aactaaatgg agaaaagttt
     2341 agaaaatata ctaaatttag ctttgcagca gttttaatca gtgctatcat cgtagcatca
     2401 aatgttttcc aagcctttgt tagcacaggt attcctcctt atgtaggaca aggcgatcct
     2461 gtaagattta gtttaaatcc aaaatacatc atttggagta aagaaggttg gaatggttta
     2521 tggcaaaata tttctttctt aggaaaacgc gatgttaaag ctcctgatta tgcttttgca
     2581 cctgcaagtg aaaaacttgg cataaaattt gataatgata tcaacaatgc tccatttgca
     2641 aaaatcaatg atgagcttaa aatcacaaat gaacaaacca taaattttga caaagccatc
     2701 aatactcttg attatatcaa taacgaattt gtagcaagtt ctaaatggga tgtagctttc
     2761 ttagataata attttagcgt taaagaaggt tttgaacttg atccttattt ttcagctact
     2821 attgatccaa tcatcggtat cataccttat atgaacgata aattcattct tatgggctca
     2881 aacaaatctt tcttaagatt tgcaaaaaat cctaatgcaa gtgaagaaga tatcgctaaa
     2941 caatacgctg actttgtaaa aggcaatgat aaatttaaag gtcaaggcga aagtttaggt
     3001 cgcggaagac ttgataccgt aagagcaaaa tttaaccatg tagcaagtat gactacagat
     3061 ggaaattatc tttatcttgc aactgttcca aacaacaaag acgctaaaac ttttgtaatc
     3121 tctaaagttt ctttaaaaga tcgtgttctt tcaggagaat ttactccaaa agcaaatctt
     3181 aaagaaggta aaactttagg cgatctttat gtaacttcta tgacttttaa agatggggaa
     3241 atttatgcac ttagcaaaaa tcacaatgtc attgctgtaa ttgatccagt caaagaagaa
     3301 gtagtgaaaa ctatcgcttt cccaagctct atcactaatg ctagaagcat tttctttaaa
     3361 gatggaaaaa tcaatattct ttcttatcaa gatggagcaa acaagcttta tactttaaac
     3421 taagctttaa gtcctagtga aaactaggac ttatatttaa tcttatcttt aaatcctgct
     3481 ttttcaaaac ctcttaaacg aagcaaacaa ctatcgcact ccccacaagc ttcatcttca
     3541 ctctcataac aagaccaagt aagttctaaa ggtacatttt cttttaaggc tagttctaca
     3601 attttagctt tgtttagtct aacaagcgga gtttttatac aaactttgaa attcttactc
     3661 gtaccttcat tgataaattc ttgtgccttt tgtataaact catcagtaca gtcaggataa
     3721 ccactgccat cttcttctac cacccctata aaaatactct cacaattttc cttttcagcc
     3781 aaagatcctg ctatacttaa gaaaattcca ttgcgaaaag gcacataagt gataggtgga
     3841 gtatcgcttg tacaaagctc atttttaggg atgtctatac ttttatcggt taaggcattg
     3901 ccccctatat ctttgataaa actcacatct aaaatataag atttttctac ttttaaagcc
     3961 ttgcaaattt gcttaaaaca ttctttttct ttttcttgag tgcgttgttc atagtcaaaa
     4021 tgcaaagcga tgatttcata accttctttt ttggccagat aagcacacaa agtactatcc
     4081 ataccgccac ttatgataca aagtgctttt ttactcattt ttatccttaa atttgctata
     4141 atttcacaat tttaacgaaa atttttaaat ttaaattgca aaaaaggcaa aagcatgata
     4201 aacataaaac tcatagaaca catttttaaa gccgcttcta tcagtcgttg gaatgattat
     4261 ccaagaatgg caaatttggt tgaacttgac aaacaagctc ataaattcat catcgcatat
     4321 tttatcgcta aaatggaaaa agatgtggat atgagagtga ttatagaagg gggaattttt
     4381 gagtttttaa gtcgtgttgt ggtaactgat atacgccctg atgtgtatca tgaaatcgtg
     4441 cgtcaaaaaa aagctgaagt taatgcttgg gttttaagca aaatcgaacc tatgatagaa
     4501 gatatagaag atggggaatt tctaaagcgt tttgaagcgt atttaaacgg taatgcttat
     4561 gctaaagaaa gacttatctt aaaagcagct tcatattttg ctacaagatg ggaatttaac
     4621 atagtttatc aaacctcagc ttttttaaat gatattgatg agattaaaaa caaagttgaa
     4681 gaagaattag aagattacta tgagcttata ggagctagaa aaattgcttt aaatcaaaaa
     4741 atagccaaaa ttattgatct tagcggaaga cttcgctttc aaaaacgttg ggctcaaact
     4801 ccacgcatac cagaaaccgc ggttttagga catatgcttg tggtggcaat tttaggatat
     4861 ttttactcac taaaaatcaa ggcttgcgat aaaagacttg agaataattt ttattgtgct
     4921 ttgtttcatg atttgccaga gtctttaaca cgtgatatta tcagccctgt aaaatacggc
     4981 attgatggac ttcatgatat cataaatgat tatgaaatga aacttattaa tgaaagaatt
     5041 ttaccctttg tacctgaggg tttaagggct gagttttctt atattttagg cattagagaa
     5101 ggtagaaacg gtgagtcaaa ttttgtaaaa aatgagtttg aaaatcgcac ttataaaaat
     5161 gctaaaatcg agctttgcag cggaagttta agctctttta atgaaaatga atttggtgct
     5221 atagatggta aggcgcttaa atactgcgat aaaattgctg cttatataga agcaggactt
     5281 agtataagtt atggtgtaaa gtctaaagaa cttgaaagtg gttttttagg aatgtatgag
     5341 ttttttaaag aaaatcctac catagatggg gtgaattttt ttgaaatttg tgaaagttta
     5401 agagagtatt ttaaaattta aataagattt ttatactact attttcaata tgttttaaat
     5461 aaaaatatta taat
//
LOCUS       DAQSLY010000104         5450 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.105, whole genome shotgun sequence.
ACCESSION   DAQSLY010000104 DAQSLY010000000
VERSION     DAQSLY010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.105"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..864
                     /locus_tag="R2H98_001466"
     CDS             <1..864
                     /locus_tag="R2H98_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024328.1"
                     /translation="ERRAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIIN
                     HAFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAE
                     QLGMFGHINIGLQSLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFM
                     SFLKSTGVSPREGSATLNPIAKSYAEAMTKESFDGSLTSLDDIMTGKVDFASLLKGYA
                     QEGWLDADIYAMEKGVAWQNTSIGYGGAWFDREFNQVKANGWKASNQSIDSYVNSIMD
                     RLNNLIGQTRV"
     gene            958..1728
                     /locus_tag="R2H98_001467"
     CDS             958..1728
                     /locus_tag="R2H98_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEE9024329.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVQKGNAELKKE
                     LDEFIAESKKDGLFDSLGEKYLKDVKDTFKKNNLEFFF"
     gene            complement(1744..2478)
                     /gene="fliP"
                     /locus_tag="R2H98_001468"
     CDS             complement(1744..2478)
                     /gene="fliP"
                     /locus_tag="R2H98_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEE9024330.1"
                     /translation="MKKILLFLLLSMSLFAAEVTIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            2621..3910
                     /gene="glmU"
                     /locus_tag="R2H98_001469"
     CDS             2621..3910
                     /gene="glmU"
                     /locus_tag="R2H98_001469"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEE9024331.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            3907..5061
                     /gene="coaBC"
                     /locus_tag="R2H98_001470"
     CDS             3907..5061
                     /gene="coaBC"
                     /locus_tag="R2H98_001470"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEE9024332.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTRNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCDKSVVVTGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQSKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            5058..>5450
                     /locus_tag="R2H98_001471"
     CDS             5058..>5450
                     /locus_tag="R2H98_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024333.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKS"
BASE COUNT         2039 a          674 c         1011 g         1726 t
ORIGIN      
        1 gagaggaggg ctgaaaataa ctcttatact tcagatataa aaaaatattt aggtatagat
       61 aaatattata caaacataga tatggctgaa accataaaac aatactataa tcaatttaat
      121 caaattatta atcatgcttt taatgatacc aataaaacaa gcttcactga agcagatata
      181 aattctatgc ctaagggaat tagtgaatta tcatctgata aaactatagg tattatgccg
      241 aaaaattatg ataagctaac aataacaaac tattataata cacaagagca atataatgaa
      301 gcagaacaat taggaatgtt tgggcatatt aatataggct tacaatcatt aaatttcact
      361 ccgcaaagta tgcaaactca aaatttagat aaagacaccg caatagatac ttttaatcct
      421 gatatgtcag tttatccaca aaatgaagat ggaagctact ctaaagaagc tttgtttatg
      481 agttttttaa aatcaacggg tgtatcgcca agagaaggta gtgcaacatt aaatcctata
      541 gctaagtctt atgctgaagc tatgactaaa gaaagctttg atggatcatt aacttcctta
      601 gacgacatca tgacaggcaa agtggatttt gcaagtttgt taaaaggcta tgcacaagag
      661 ggttggcttg atgcagatat atatgcaatg gaaaaaggag ttgcttggca aaatacaagt
      721 ataggttatg gtggagcttg gtttgataga gaatttaatc aagtaaaagc taatggttgg
      781 aaagcaagta accaaagtat agactcttat gttaattcta taatggatag acttaataat
      841 cttataggac aaactagggt ttagaagttt taatttttta agtttgaaac aaattgctaa
      901 taacaaaata agataaaatt agtataattt ttttacaaaa aaatttgaaa ggaaattatg
      961 aaaaaaatta ttttgatttt tatctctttt tttgctttaa atttgagtgc aaaagatttg
     1021 gttgtaggaa tggagcttgg atatccgcct tttgaaatga gcgataaaac aggcaaagca
     1081 agtggaatta gcgtggattt tttagaagct tttgcaaaga aaaacggcta taaacttgta
     1141 gtaaaaaata ttgcttggga tggtttaata cctgctttaa aaacagccaa gatagatctt
     1201 attatgtcct ctatgacaat taccgatgag agaaagaaag tggtggattt tagcattcct
     1261 tatgctaagg caaatttggc tattttaact cctttgaact ctgatattac aaatatcaaa
     1321 gatttagata aaaagggcaa agttttggct ttaaagcgtg gttctacagg gcatttatat
     1381 gcggttaaaa atttaaaaaa tgcaactatt aatttatttg ataaagaaaa tgctgctatt
     1441 ttggaagtga ttcaaggcaa ggctgatgga tttttttatg atcaacttac gatttatcgg
     1501 acttggcaaa agcatcaaga tacaaccaga gccattttag cgccttttca agaaaatcct
     1561 gagttttggg gtatagcagt acaaaaaggc aatgcagaac ttaaaaaaga gcttgatgaa
     1621 tttattgcag aaagcaaaaa agatgggctt tttgattctt taggagagaa atatcttaaa
     1681 gatgttaaag atacttttaa aaagaataat ttagaattct ttttctaaga aggattttcc
     1741 ttcttaggtt acaaagcttt ccacaagcct ttgcactagc aaattccatc catccactaa
     1801 tacaaaaatt aagagtttaa aaggtaaaga gatcatagta ggaggcagca tcatcatacc
     1861 catagccatt aaaactgagc ttacaaccat atctatgact aaaaagggca ggtagattaa
     1921 aaaccctatt tcaaaagcgg ttttaagctc tgaaatcata aaagcaggaa ctaaaaccgt
     1981 aaggggaaca tcatctatgg ttttgggatt gggtagattg cgtatgcgat aaaaaagggc
     2041 taaatctttt tcgcgagtat ttttaagcat aaaatcttta aaaggctttg ctccttttat
     2101 aaaagcctct tcatagccta ttttttctgc taaataaggt tttatacctt cattatagga
     2161 ttttgtagct acaggttcca tgataaaaaa agttaaaatt aaagccaagg ttaccaaaat
     2221 agtgttaggt ggcatacttt gcgtccccat agcttgtcgt aaaaatgaaa atactacaat
     2281 aagacgcaag aaagaagtca taacaaaaac tatacttgga gcgagcgcaa gtatggttaa
     2341 aacaatcact atatttaaag tagtaacaag ctgattaggt gtattgggtg cacttaagct
     2401 taaatttact gtagggatag ttacttcagc agcaaataag ctcatgctta aaagtaaaaa
     2461 taataatatt tttttcaaaa tttaaaaacc tttttttgtt ttttattaaa gaaatttaaa
     2521 ttttatcttt tgatgactaa aaactagttt aagggtatta ggattttaac tttaaactgc
     2581 taaaatagtc ttttagactt cttaataaca aaggtaaaaa atgaaaactt ctattttgat
     2641 tttagcggca ggattaggca ctagaataaa atcacaaaag ccaaaggttt tgcaagagct
     2701 ttgtcaaaaa agtatgattt tacacatttt aaaaaaggct tttgctttaa gtgatgatgt
     2761 aagtgtagtt ttatcgcatc aaaaagaacg cgttgaaaaa gaaattttag aatattttcc
     2821 aaaaacacaa attttagagc aagatttgca aaattatcca ggaactgcgg gagctttaag
     2881 tgggtttgag cctaaaaatg aaagagtgtt gattctttgt ggtgatatgc ctttagttga
     2941 gcaaacaagt ttggaagctt tgttgagtaa taatgcaaaa ttaaatctag cagtttttaa
     3001 agcaagagat cctaaaagtt atggtagggt ggtgataaaa aacgatagcg ttgaaaaaat
     3061 tgttgaattt aaagatgcaa atacgcaaga aaaagagata aatacttgca atgctggggt
     3121 ttatgtgatt gactcgaggc ttttaaaaga gcttttacct ttgattgata acaataatgc
     3181 ggcaaaagag tattatttaa ccgacattgt aaaactagca aaagaaaaag atgtgatgat
     3241 taaagcagtt tttgtagatg aagatgaatt tatggggatt aatgataaat ttgaactcag
     3301 tatagctgaa aatttcatgc aagaaaaaat taaaaaatac tggatgcaac agggtgtgat
     3361 ttttcattta ccgcaaagca cttttatagg tgcagatgtt gaatttgtag gtgaatgtga
     3421 agtatatgaa aatgtaagga tagagggcaa aagtaagatt ataaactcta tcattaaaag
     3481 ttcaagcgtg atagaaaatt ccatcgtaga aaatagcgat gtagggcctt tggcacattt
     3541 gcgtccaaat tgtgagttaa aaaacactca tataggaaat tttgtagaat gcaaaaatgc
     3601 aaagttaaat accgtaaaag cagggcattt gagctattta ggagattgtg agatagatag
     3661 tggaaccaat ataggctgtg ggactatcac ttgtaattat gatggggtaa aaaagcataa
     3721 aaccatcata ggaaaaaatg tttttgtagg ttcggatacg caatttatcg cacctgtaaa
     3781 aatcgaagat gaagtgatca tagcagcagg aagcacagta agtgtcaatg tagaaaaggg
     3841 tgctttgttt atcaatagag cagggcataa aatgataaaa gattattatt ataagaaatt
     3901 tcaaaaatga aaaccatact tttagccatt agcggtagta tagcttttta taaatcttat
     3961 gagcttattt ctttgtttaa aaaagaaggc tttagggtaa aagttttgct ttctaatggt
     4021 ttgttaaaat ttgctagcaa aatgagtttt gaagccttgg ttgatgaagt tttatgtgag
     4081 gaaaatgaaa gttggcaaaa ttcaaacaat cacatagctt ttagcaagga tgtagacctt
     4141 gttttgtttg cccctgcaag tgttaattct atcaataaac ttgcttttgg tatagcggat
     4201 aatcttttta tccaaacctt aatcgcagca aataaacctc ttatcatagc tcctgcggca
     4261 aatacaaata tgtttcatca ttttagcacg cgaaattctt taaagatact taaagaaaat
     4321 aaagctttga ttatagagcc tatttgtaaa gttttagctt gtaaagatga aggcgtagga
     4381 gccttagctg aagttaagga tatttttaat atcaccaaaa gagagctttt aaaagaaaag
     4441 ttttggtgcg ataaaagtgt agttgtcaca ggtggcggca caaaagaaaa gatcgatgat
     4501 gtgcgttgtg tgagtaattt ttcaagtgga aaaatggcaa aggccatagc tgacgctttt
     4561 tattttttag gagctagggt aaaactttta agctctgtgg aatttgatac gccttatgag
     4621 ctttgcaaat ttgaaagttc taaggatcta aaggagcttt tggataaaaa tttaaatcat
     4681 gactttttga ttatgacggc tgcggtgagt gattttatcc ctcaaagtgt aaaagggaaa
     4741 attaaaaaaa atgagcattt acagggttta aatttgcatc tatctttaaa tgaagatttg
     4801 cttaaaactt gcaaatttca aagcaaaaag ataggtttta agatggaatt tgattctcaa
     4861 aatgccttag aaaatgcgaa aaaatcttta aaagataagc aacttgatat ggtttgtctt
     4921 aatatcattg atcaaaaaaa ttattttgga agcgatcaaa atgagcttta ttttatcact
     4981 ttaaacaatg aaaataaaag cactttgcaa agcaaagaaa aattggcatt tgaattagta
     5041 aaatggtgtg aaaaattatg agtatgatta attctacctt acctatacaa atgaaagttt
     5101 tagctaaatc aggttatgga cattatacgc ttttattaaa tcataaaaag attcaaacca
     5161 aaagcatgat agagcttgaa attggtgctg aatatttagc tgaactttat atgcaaaatg
     5221 gtggagttat acaatttaaa catctttcaa agcgtcctaa ttttaaacct tttgaagagg
     5281 gattggcttt gataatcgct attttagagg ataaaatttc ttataaaaaa ttcatcatac
     5341 aaaatctttt agattgtaaa gatatagagc gttatcagat attaaaagaa atgctttttg
     5401 caagttttga aaatatttat catattcctt ttatctttga aaataaatct
//
LOCUS       DAQSLY010000105         5245 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.106, whole genome shotgun sequence.
ACCESSION   DAQSLY010000105 DAQSLY010000000
VERSION     DAQSLY010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5245
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.106"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(118..1137)
                     /gene="hddA"
                     /locus_tag="R2H98_001472"
     CDS             complement(118..1137)
                     /gene="hddA"
                     /locus_tag="R2H98_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEE9024334.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLGDDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            complement(1212..2150)
                     /locus_tag="R2H98_001473"
     CDS             complement(1212..2150)
                     /locus_tag="R2H98_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HEE9024335.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CSHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYVPDFYIHSASIGEDPDKRDYLVSN
                     AKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV"
     gene            complement(2174..3209)
                     /locus_tag="R2H98_001474"
                     /pseudo
     CDS             complement(2174..3209)
                     /locus_tag="R2H98_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
     gene            complement(3218..4258)
                     /locus_tag="R2H98_001475"
     CDS             complement(3218..4258)
                     /locus_tag="R2H98_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEE9024336.1"
                     /translation="MQKNSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLI
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNSLEQAMEYLQ
                     KFGVSKDSVEIWGGGSVIREFIHAKDLADASIYVMKNIDFKNIVSSNEPHLNVGSGEF
                     LSIKELAFLIKNIVGFKGEIVFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            complement(4258..4803)
                     /locus_tag="R2H98_001476"
     CDS             complement(4258..4803)
                     /locus_tag="R2H98_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEE9024337.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAVDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHER
                     FIINQDNQKIILVPAGFGNAHYVSSETAVYYYKCAYLGEYMDAPDQFTYAWNDERIGI
                     DWPTNNPILSERDILAMSKDK"
     gene            complement(4803..>5245)
                     /locus_tag="R2H98_001477"
     CDS             complement(4803..>5245)
                     /locus_tag="R2H98_001477"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEE9024338.1"
                     /translation="CALQYLDELISMKHNNTLLLKLIDKIKYNLCYNGELRLKGTLQY
                     KLGQVFLNIFTKSNIIDVLFFLSRYKKEKKKIELFIQNFNINIPSFEQCYDYSNAKRI
                     EHYLSYNIGKIMIQAHQSWYKGAYFILPYKIYMLYKNFKYKKGK"
BASE COUNT         1704 a          988 c          636 g         1917 t
ORIGIN      
        1 gtaaatgcat gctaggtttt tcttgtaaat tttcagcaga aataaaaata ttattggctt
       61 taaatataat attctcatga tatacttggc cgcataaact acatttttgt aaattattca
      121 tattctccat gatttaaccc cctcttttgt aaatgaaaaa tcttgcacat aaccttgctc
      181 tttgcttaaa gctttgatta ggttgtattt tttagtagga tctacaaaga aaaacataaa
      241 tccacctgct cctgctccac tagttttgcc actataagct ccattatcta tagctagttt
      301 ataaattctt tcaagctcat cattgctaac gatttctgaa atgatttttt ttgactgcca
      361 agacttgcct aaaattttcg ccaaagtatc aaaatccgcc ttaaataaag cttctttcat
      421 ctttatagca tcttgtttta tagcgtgcat agcttcaagg gatttttcat ctccgagctt
      481 tcctttttta tgctcttcta tatcttttgc ttctcttgtg atatttgtaa aataaagcac
      541 aattctagct tcaagctcac tagctatcca gtttttaata cgcaaaggat taacgattac
      601 tcttttatta tcataaaatt ccataaaatt aaagccacca aaagttgcgg cgtattgatc
      661 ttgtgctccg cctactatgc ctaaatcttc tctttctatc tcataagcaa gcttagcgat
      721 ttcatattct cctaaaggta gattaagcca ttctgcaaag gcttttataa cccctacaac
      781 caaagttgag cttccgccca aaccactacc acttggtaca tctgagtatg tatgcaaaga
      841 aaaacttaaa ggtttttttg taaaatcttt tacaatgcga ttataaatac ttttaaaaat
      901 atctaatttt ccatcatctc ctaagaattc tttactttcg tactcagagt aagaatttgt
      961 atcaggagaa tcaaaaatga tctttccatc ttctctttcg atcaaagtgc aatgtatgta
     1021 taaagatata gtcgcattta aaacataacc tgtgtattta tcacaatata aatttatatc
     1081 agttcctccg cctgctagac cgagacgaag aggagtttgt gtgcgtatgg ttttcatcga
     1141 attactactt attttgctat aatttattat aaaaattata gcaaaatata cttaacttct
     1201 attaatatca cttaaacatt tgcaaagcga ttaactttca tcattttaaa tgctcttaaa
     1261 agttcttcaa tgccatcttc taaagtatta tctggtttcc aacctgtagc ctctaattta
     1321 gcatttgaaa ccaaataatc tcttttatcc ggatcttcac ctatactagc tgaatggata
     1381 taaaaatcag gaacatactt tttaatcgtt tcagcaagct gtcttttagt caaatttgca
     1441 gaacttaatc ccatattata agcctgaccc ttcatcttat cataattctc aattccatga
     1501 ataaatcctt taaccacatc acgaacatga atataattgc gtctaaaatg ctcttcaaaa
     1561 agcactataa atttatcttt atatgcacga taggtaaaat cattaacaag taaatcaagt
     1621 ctcattctag gtgaaattcc aaaaacagta gccaaacgaa aagttacaca atttccttta
     1681 tcaagcaaat attgctccgc atgcacttta tcaatcccat attctgagat aggacgcaag
     1741 ggagattctt cagtgcacat tgcatctttt tctcctatac cataaccgct atttgtattg
     1801 ggataaataa atatttgaga aggacttgca aaatcgctta tcatttttac agcttcataa
     1861 ttgatcattt tggctaattt tggatttctt ttgcaaagtg gagctccaac caaagcagct
     1921 aggggaataa taatatcagc ttttgctacc tcttgtctaa taagattttc atccatagca
     1981 tcaccattta taaaagtaaa atttttatta tgagaacaag ataaaagaga gatttgatca
     2041 aacatcaaat tatcaatcac acaaacttca taaccttttt caagtaaaat cggtgttaaa
     2101 accgaaccta tataacctgc accacctgta attaaaactt tttttgacat atttttcctt
     2161 taaatcgatg gttttatcga tttaaaggaa ttctgcctct cttaatttca tttctccaat
     2221 gatttagcaa atctttaagc atttgtctaa caggaatttc agctttccaa tcgataaaac
     2281 tctttatttt accattatca aacatttgat agtcagcatc aataggacgc atcctatctt
     2341 caacttgtct tacctcaata cccccccccc atatcactaa aatttagcaa tatatctata
     2401 acttcaggaa gtttaaaggc ttcttctcct gctatattaa aagcttcccc acaaggaact
     2461 tttccttttt cactttcaag agaaagtaga taataagccc ttatagcatc tctggcatct
     2521 tgaaaagttc ttacgcttga gagatttcca accttgataa caggctcttg ataacccgct
     2581 tcaattaaag caatttgttt tgcaactgtg ctttcaaaaa acacatcaga acgtcttggg
     2641 ccactatgtg ttcccattct tgtaacaaaa gtgcgaatgt tataagcttc gccataaaat
     2701 cttcccaaat aatcagtgcc aattttgctt atactgtaag gacttgcacc gtgaaaagct
     2761 gtttcttcat taagcttaac acctgctttt gctttaccat aaacttcact tgaagagcaa
     2821 atatgcacta cagggtcata tccatctttt gcctttaaaa ttctaatgtt ttccaaaata
     2881 tttgctgtgc ctattatgtt agtctgtaaa gtttctatag gtatatcaaa agaagttttt
     2941 ggataagact gagctgctag gtgaaaaatc acatcaggcc tttgactctc aaaaagtttt
     3001 tgaagactag agtaatcatt taaatctgca taaaaaatac tgattctatc ttttttattg
     3061 atcctatcac ttaaatgata gatattatcc ataggttctt gccaacgcat catacctata
     3121 acatcatagt ctgtgttttc tagcaagaaa tctgccattt gagaaccaac ttgccctgta
     3181 aatcctgtaa ttaatgctgt ttttttcatg atttttccta ttgtcttata ttttgctctt
     3241 ttaaatacca ttcatacatc atcttaatgc catcttcaag cttgattttt gccttccagc
     3301 ctaaattttg caatcttgaa ctgtctaaca ttctatccat tgtagaatct ggttttgaat
     3361 tgttaaacac aatttcaccc ttaaatccaa caatattttt aatcaaaaaa gcaagttctt
     3421 tgatacttaa aaattcccca cttcctacat taagatgcgg ttcattagat gaaacaatat
     3481 ttttaaaatc tatatttttc atcacataaa tagaagcatc agctaaatct tttgcatgaa
     3541 taaattccct aattacacta ccaccacccc aaatttctac gctatcttta cttacaccaa
     3601 atttttgtaa atattccatt gcttgctcta aggaattcat ttgcaaatcc tttaaaacct
     3661 catcaatttt attttcatct aaaagttttg ctaaatgaaa tttgcgaagc aaagctggta
     3721 aaacttttgc tttttgtaaa tcaaactcgg ttgtctctcc atacaaattt gcaagataca
     3781 aagtgataaa atttgttcca tattgcaaat tataactttc gcacattttt gttcctataa
     3841 tttttggtaa accatatgca acggctttta aatctagctt tccatctaat aaattctctt
     3901 ctttaatggg atttatagct ttttgagggt aagcccaagc agaaccataa aaaattagct
     3961 ttttaacatt attttgataa gatgaatgaa tgatatttgc ttgaagtacg ctattttcat
     4021 agattacatc ggctggagta aaaagcccta aagtatcaag cttggcagca cataaaaaaa
     4081 catattctgg tttttctttt gcaaaaaaat cagtcacagc tttttgatct actaaatcta
     4141 attcttttct tgtttttacg ataatattat taaaaccctc atctataagt gtattataaa
     4201 gagtttttcc taaggtacca ccatgtcctg ctatgtaaat tttggaattt ttttgcatta
     4261 tttatcctta ctcatagcta aaatatcacg ctccgaaaga ataggattat tagtaggcca
     4321 atctatgcct attctttcat cattccatgc ataagtaaat tgatcaggag catccatata
     4381 ctctcctaaa taagcacatt tataataata aactgcagtt tcactactaa cataatgagc
     4441 atttccaaaa cccgctggaa ctaagataat tttttgatta tcttgattta tgatgaatct
     4501 ttcatgcttt aaataagttg gggaatcttt tctgcaatca accacaactt gatgcacttc
     4561 tccatagaca caagtggcta acttataagt ttttacatca ccatggatac cgcgaataac
     4621 attatgttta gaatgtatga atttatcgtg tataaatttt aatccatttg gcaagagttt
     4681 atctacagcc tcgcttgtaa aagctgtcca aatttcacct cttaaatctc taaatttgtt
     4741 aggagttatg atatacactc cttttaaaat ttttgattct tgtatatcaa attctattgc
     4801 cattattttc cttttttgta tttaaaattc ttataaagca tgtatatttt ataaggcaaa
     4861 ataaaataag ctcctttata ccaagactgg tgagcttgaa tcattatttt acctatatta
     4921 taagataaat agtgctcaat tctttttgca ttgctataat cataacattg ttcaaatgat
     4981 ggaatattaa tattaaaatt ttgaataaat aattctattt ttttcttctc cttcttatat
     5041 cgacttaaaa aaaataaaac atctattata ttacttttag taaaaatatt taaaaacact
     5101 tgtcctaatt tatattgcaa agtacccttt aatctaagtt ctccattata acataaatta
     5161 tattttattt tatcaatcaa tttcaataaa agcgtattgt tatgtttcat acttattaac
     5221 tcatctagat attgcaaggc acaat
//
LOCUS       DAQSLY010000106         5220 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.107, whole genome shotgun sequence.
ACCESSION   DAQSLY010000106 DAQSLY010000000
VERSION     DAQSLY010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5220
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.107"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            137..1273
                     /gene="pseA"
                     /locus_tag="R2H98_001478"
     CDS             137..1273
                     /gene="pseA"
                     /locus_tag="R2H98_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEE9024339.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            1270..1875
                     /gene="hisH"
                     /locus_tag="R2H98_001479"
     CDS             1270..1875
                     /gene="hisH"
                     /locus_tag="R2H98_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEE9024340.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            1876..2622
                     /gene="hisF"
                     /locus_tag="R2H98_001480"
     CDS             1876..2622
                     /gene="hisF"
                     /locus_tag="R2H98_001480"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEE9024341.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2587..3060)
                     /gene="pseH"
                     /locus_tag="R2H98_001481"
     CDS             complement(2587..3060)
                     /gene="pseH"
                     /locus_tag="R2H98_001481"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEE9024342.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(3057..3881)
                     /gene="pseG"
                     /locus_tag="R2H98_001482"
     CDS             complement(3057..3881)
                     /gene="pseG"
                     /locus_tag="R2H98_001482"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEE9024343.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3865..4563)
                     /gene="pseF"
                     /locus_tag="R2H98_001483"
     CDS             complement(3865..4563)
                     /gene="pseF"
                     /locus_tag="R2H98_001483"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEE9024344.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATGFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            4642..>5220
                     /locus_tag="R2H98_001484"
     CDS             4642..>5220
                     /locus_tag="R2H98_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEE9024345.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDLKAIVFIA
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSINKDNFEQIIPLIEQKVNEMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIY"
BASE COUNT         1803 a          679 c          901 g         1837 t
ORIGIN      
        1 tcattcaaaa aatgccatat ggatttaaat tatagaattc attcattttt taatttttat
       61 ataatataaa tatataaaat cataaaataa aatttaatta taacgatata tatttaagac
      121 taattaaagg aaatttatga aattttgtaa aaaatgtgtg atgccagata ctaagcctga
      181 tttacatttt gatgaagaag gtgtttgtga tgcttgtcgt tctcaagaag ctaaaaatca
      241 aaatattaat tggcaagaaa gagaaaaaga attttttgag cttataaaaa aatacaaaaa
      301 acatcctgtt tatgattgtg ttatcggagt aagtggcgga aaagattcta cttttcaagt
      361 ggttaaaatg cttgaacttg gacttaatcc tttgtgtgtg tgttttgagc ctagcgtacc
      421 tacgaaaata gggcgcaaaa atttagacaa tttaaatcat cttggcgtgg atttgatcca
      481 tatcaagcgt gatccaaaag tttatcaaaa acttgcccgt gaagctttta taagaacagg
      541 ggataatgag tggcaaaacc atttgggaat ttttacttct gttccacgca tagcggtaaa
      601 ttttggagtg cctttgatca tctggggaga aagtccgcag atagagtatg gcggtcctgc
      661 gagtagtaaa aataaaaata ttttaggcag agagtggctt gaagaatttg gcgggctttt
      721 aggaaatcgt gcttctgata tgcttggggt aaatggtatc actgaaaaag atttgttttt
      781 atatacttat ccaagtgatg aagaacttca aagagtaggg gttactgggc tatttttagg
      841 gtattatttt aaatgggatt ataaaaaaat tcttgaaatt tctaaaaaat atggtttttt
      901 aactctagat catcctgttg agactactta tgaaaatttt gaaaatttag attgttattc
      961 taatcatgtg catgattatt taaaatactg caaatacggc tttggtagag caacggataa
     1021 tgcttgtttg gatattcgtt taggttatat cagccgtgaa gaaggggtgc gtttggtaca
     1081 aaaatacgat ggcaagcccc ctaaaaaggc tattaaaaaa taccttgaat tcagtggttt
     1141 tagcgaggaa gaatttcaaa aaatagtaga ttcttttacc aataaaaaaa tttttaaacg
     1201 tgatgaaaat ggtaaattta taagagatta tgatggttct ttggtaagaa aagacgagtg
     1261 tgttttaaaa tgatagcgct cattgattac aaggcgggaa atttaaactc tgttgctaag
     1321 gcttttgaaa aaataggagc tataaatttc atagctaaaa atccaaaaga tttgcaaaaa
     1381 gcagataaat tgcttttacc tggagtggga tcttttaaag aagcgatgaa aaatttaaaa
     1441 gaatttggtt ttatagaagc tttaaaagag caagttttag tacaaaaaaa acctatttta
     1501 ggcatttgtt tgggaatgca gcttttttta gaaaggggct atgaaggtgg agtttgcgaa
     1561 ggacttggtt ttatagaagg tgaagtagtc aaatttgaag aggatttaaa tttaaaaatc
     1621 ccacatatgg gttggaatga gcttgaaatt ttaaaacaag ttcctttgta tcaaggcata
     1681 gataataaga gtgattttta ttttgtgcat tctttttatg tgaaatgcaa agatgagttt
     1741 gtaagtgcta aagcacaata cggacataaa tttgttgcat ctttacaaaa agatcatatt
     1801 tttgctacac aatttcaccc cgaaaaaagt caaaatttag gcttaaaact tttagaaaat
     1861 tttataaggc tttaaatgtt aaaaactaga attatccctt gtgttttgtt aaaaaacgga
     1921 caacttgtta aaagtataga atttaaagat tttcgcacta tagggcattt aacttcaaca
     1981 atgagaattt ataatgcacg caatgttgat gagcttatta tcttagatat agatgcttca
     2041 aaaagtggag aaatagattt tgaaagtata gaagatcttg ctaaagaatg ttttatgcct
     2101 ttaactatag gtggcgggat aaaaaccctt gaagatatac aaaagatttt aaatttaggt
     2161 gcggataaaa tttctatcaa ttctaaggcc ttagaagata tggattttat aagtaaagcg
     2221 gctaatcgtt ttggttctca atgtatagtt tgttctatag atgttaaaag aaaaggaggg
     2281 caattttgtg tttatgacag gggaaattta cttgaaaaaa gtcctttaga acttgcttta
     2341 gaatatgaaa aaaaaggagc tggagagctt cttttaacct ctgtggattt tgaaggaaaa
     2401 gcaaagggtt atgatttaga acttttaaag atctttcaaa ataaacttaa aattcctctt
     2461 attatcaatg gaggacttag caatccaagt gatggagttg aggctttaaa tttaggtgct
     2521 gatgctttag cgggtgctta tatttttcat ttttctaagt atacccctaa agatgtaaaa
     2581 gaagaattag ctaggcaagg ctttgcagtc agattgcttt aggcaaatat ggtaaaaatc
     2641 tttatcttca tcataaatag taaaatgatt ttgttgatat aattttaaag ctttgcgatt
     2701 gtctttgaaa acataagctt taagagtatt tacttttaag ttttcaaaag cgtattttat
     2761 aatttcattc attaaaattt gtcctacgcc ttttaaatta ggttttgcgt aaagtccaaa
     2821 ttcgcaagat ttagttgtga tattgacaaa atcaattacg ccgataatct gttcatcttg
     2881 aaaaactaaa aaatattttt tgctagaatc ttgatgtaat ttttttaaaa atcttaaatg
     2941 ttcttcaaaa tcaatatatt ttgttttcat aaattgattg atatcggggt gattgcgcca
     3001 tttaaaaatc agctctattt cttgagaatt aagttctgtg aaatttttaa gttttatcaa
     3061 tacttatact ccacttcata ccctttttta gcaagccaag ttgctgtaga ttcttgattt
     3121 ttaacataac aaatagcttt gaaatttgcc tttaaaagca aggcttcatt gactaaagaa
     3181 cttgcactaa tgatgagttt attgctttca ttcatcaatt ttgcaatatt ttcatgatcg
     3241 ataaataatc taatattgtt atgtaatttt gcaaattttt gcaatttttt aagattagga
     3301 ttagaagagc tggttgcaat gctgatgatt tttgttttag gtaattcgct agcaatttgt
     3361 aaagaaaggt tttttatatc agttccaccc atgcaaatga aaaaatcata ttttttttct
     3421 ctattttctt tggcctcttg ataaaattct tccctgatta aagcataaga aaaaccacat
     3481 cttacttcgc atttaaaagg cactaaacct tcataatcac ttgcttttgc ataggcattg
     3541 acattgagta aaatatcaca atgatgaggc tttatttcat catcaaagct tagaattttc
     3601 acccctgttt caagcttgat cagtttttca tcatctacgc tgatgccata gtgatcaatg
     3661 ataagaagtt caaatttttc ttctttgatg agattgataa gctcgtagat actttcgcta
     3721 ctaagctcat aaacaggata aggaatttca tcgatcaagg agccttctaa aggcaagcaa
     3781 gcaaaactta catcgctata ttgtttagct aagactagat cgcgtttaat gtgtccaaag
     3841 cctatttgac tggagctatc gcttctaaaa agcactttca tgatttacct tataaagtat
     3901 ttttgcaaat tccaaatctt gtatggtgtc tatatcgcaa actaaatttc ttggcaatac
     3961 aaacacgcta gaatgaggtt taaatataaa atcttcctca agccaagctt tgcttgtacc
     4021 aaaataaaaa gctcctgcat catgataagc ttttgttaga tcttgtgaac gacttttata
     4081 atgtttttca tcaaacatat aaacttgatt gttttcattt agataaaatg ccctttgtat
     4141 aggatactca aacccagtag cagcaaataa aaacttgctt tgattttgta taaatttttc
     4201 ataggcttgt tttaaaatgt ctttatttaa caaaggagca gtagcataaa ggcagcagac
     4261 atgatcataa atttgatttt ggctttgtaa aatttctatg gcattttgca ctacagcagt
     4321 gcttgaagca taatcatcgc ttaaattttt atcacgcaca aaaggagctt ttgcaccgta
     4381 ttttaaggct acttctatga tttcttcatc atcgcttgaa agcaccactt catcaaaaat
     4441 acctgaattt aaagcatttt ctatgctata agagattaaa ggtttaccta gaaaatcaat
     4501 gatatttttt ctaggaattc tttttgatcc accacgagca gggattatgc aaagattttt
     4561 catagttaag ccttgttttt gtgttttatt ttactaaaat ttaagtataa ttgtctttaa
     4621 aatacaataa aaggcttaaa attgcttata aatcaaacct ttgaaattga ttcttgtgat
     4681 gatgtagaat taaatataaa aagaactagc aaacttgaat accgcattag ctatgatgat
     4741 gaaaaagatc tcaaagccat agtttttata gcgggtggtt ttggagctaa tgcaaatatt
     4801 tcttttttag attttgatag ggaatatatt gctaaaaatt ttgatgttgt agtggtacat
     4861 gttttttatc attgtttttg tgcaagacaa agtattgatc aaaagtataa tccaaagctt
     4921 attcccaatc aagatgattt agagcgtgta aatggcattt taaaaaatat taatttagga
     4981 catttatcga ttaataaaga taattttgaa caaattattc ctcttataga gcaaaaagtt
     5041 aatgaaatga aacaagcagg tttggttgat gaaagccaaa aaatagaact ttcttgtgat
     5101 tttatcccac ctaatggaga ttatcaaaac tatggcatta tggcagctat tgatcatatc
     5161 aatgctttaa aagatttagt taaacgcttt ccaaaatttg cagatttacc aaaaatttat
//
LOCUS       DAQSLY010000107         5189 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.108, whole genome shotgun sequence.
ACCESSION   DAQSLY010000107 DAQSLY010000000
VERSION     DAQSLY010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5189
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.108"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            266..1174
                     /locus_tag="R2H98_001485"
                     /pseudo
     CDS             266..1174
                     /locus_tag="R2H98_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1209..1850)
                     /locus_tag="R2H98_001486"
     CDS             complement(1209..1850)
                     /locus_tag="R2H98_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEE9024346.1"
                     /translation="MRKFFCKFVLTLVFCSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSYKLADVYFVSYFLNKQRNFSNLNEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1934..3371)
                     /locus_tag="R2H98_001487"
                     /pseudo
     CDS             complement(1934..3371)
                     /locus_tag="R2H98_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3407..4207)
                     /gene="dsbI"
                     /locus_tag="R2H98_001488"
     CDS             complement(3407..4207)
                     /gene="dsbI"
                     /locus_tag="R2H98_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEE9024347.1"
                     /translation="MSYIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWAPSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(4204..4866)
                     /locus_tag="R2H98_001489"
     CDS             complement(4204..4866)
                     /locus_tag="R2H98_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEE9024348.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYHCTHCYDHRKFNTMGKVKEKLPNLTYKFYPVSSMGDYGRQANEIFAFATFK
                     DGVNKIDPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAINSPEALIEITKELSK
                     QK"
BASE COUNT         1828 a          846 c          714 g         1801 t
ORIGIN      
        1 gattttgaaa aacgcagttg tctaagtctt ttttttcttg aatgcttaaa tttttcatta
       61 acctaacctt taaaaatatt gcaagatttt attatagcga aaaaacttta tttttgcttt
      121 aaatatataa gttctatttt aaatataaac gaatattatt ttaaggttta aagctttttt
      181 cttaaaatgt aattaggttt tattgacttt ttctaaataa agtcttatac tgaatttaaa
      241 ttacgcaaaa taaggaggga aattgatgaa taaattttct atagttttaa ctttgttgtt
      301 atgtggaagt tgtgctttag ccttagatcc aaatttggaa aaaactaaga gtgcaacagg
      361 tattgatctg cctactgcca aatggttatt ttgggaaata aaattcttaa tgaaacaagc
      421 aaatatgtgg gtccacaagc caaagatcct aaaaaaagat ttgcgggaaa taatctttct
      481 tgttcaagct gtcatgctaa tggtggaagt gtgcaaaatc aatcgggttt tgtaggaatt
      541 taggcaagat ttccacaata taatgcaaga ggagataaag taattacctt agcagatagg
      601 atcaatggct gttttgaacg ctctatgaat ggcaaaagaa tgcctagtga tacacctgaa
      661 atgaaagcca tgctaactta tatgcaatgg ttatctcaag aagttccagt aggagctaag
      721 atagaaggat agggacttaa gaagatagat ttcatcttaa gagcagatga tcctaaaaaa
      781 aggtaaggca atttatatgg ataaatgtgc cgtttgtcat caagaaaatg gcttagggct
      841 taaaaatgag gatagcacag gggcgtatta tctttatcca ccactttggg gtgatgatag
      901 ttataataca ggaactggaa tgtatcgtct tatcaaagct gcttcttata ttaaagaaaa
      961 tatgcctcaa ggtgcgcctg acttaagtct tgaagatgct tatgatgtag cagcttacat
     1021 gaattcacaa gctcgtccta ttaaagcaaa tagaaataaa gactttccag atagaaaggt
     1081 taagccttta gatatggatg taggacctta tgatgatagc ttttctacaa cccaacatcg
     1141 ctatggacct tatacaaata tgatcaaaaa ataattttta aggcaatttt tattgcctta
     1201 aaaatttatt atttcatatt acttaatttt ttaactagat cttctaaatc ttgcatcgaa
     1261 ttgattgcac ttgggttaat ttgatatttt ccattaacaa caaaagcagg ggtgccatag
     1321 gttttagcta tatcattagc tctttgaaac tcgcttaaaa tttctttagc ttttggggta
     1381 tttaaaaaat ttaatacttc atttttattt acattcatag cctttaaacc tatgtcgtaa
     1441 aattcattta aatttgaaaa atttctttgc ttgtttaaaa aataagaaac aaaataaaca
     1501 tcagcaagtt tataagataa actatcagaa taactcgcgt ctttaccatt ttgttcatct
     1561 ttgtattgag caaaggcaaa aagctcattc atttctttgg aaaattcccc attcattaaa
     1621 cttacaggat agagtttaaa atgtaaattt ggaaaagctt ctctcagttt ttcaagggtt
     1681 ccaaatttat gatgattgta acaatgtata catttataag aaaatgcttc tattacacta
     1741 ttttcagagc taggtaaact tggattaaga gtaataaaac tattatttgc taatgcaaaa
     1801 cttgaacaaa atacaagcgt taaaacaaat ttgcaaaaaa atttacgcat attatatcct
     1861 tggttaaata aaattttcaa agataatttt atttaaaaaa aataaataaa cccaaaaata
     1921 aatttgggct tatttatttt ttaggattga atgcttgatc aacactaaaa ggcattgctt
     1981 gataacccgt gcctgaaccg ctgaattgaa tttgaaccga aggctcctta gcgccccagt
     2041 taaattcatc aattttaggt tttggttctc caagacttac acctttacta agattaaaag
     2101 ccattccagc gttgcactat aaaccataat agaatcttta tctggttcat attgagttaa
     2161 agaagttaca ggataaaacc attcattgtc atttttatct acaggttgca ataaatattt
     2221 ttgaaattct ttattccacc ctttatatgc gcccaattcc tacctatacc tgctatatct
     2281 ccaaatttgt cgctttcatc cattttggca agctcttcat cgcttaaagt tttacccact
     2341 ttacttgcat ctatatttaa acacactgca ctttgatcta aagttttgat aatagtactt
     2401 ctataaggat ctaaaatctc atacaatctc caatcatcaa caacattacc atcctcatct
     2461 acttctataa tagtatcaca cactgtgcgt acatgcttac tatcttggac gcaaagtatt
     2521 tgttgaagaa ataatgccca ttttttgcat attgtccata gcatgagaaa aaatctatat
     2581 aggcagcagg taatttgcga ttgaaaattt ctcttcccag acatcgtatt ttacatatct
     2641 ttgaccaaat ccccaagtta aagctccatc tttgttttga cgaaaactta tcataattcc
     2701 acgattgtaa atattacccc agttcattag tttattgtta tcataatacc atctgatttc
     2761 acccttggta tcttataata aagacatttg aattttcatc ccattccata gcaccaccta
     2821 caagattatt ccatacagat tatgagtctt tgccagatta ttttccagga gcattattta
     2881 ctaaatatag cctatctgaa aattttggat ccatttttaa tactttcaca ttttcaaaaa
     2941 gagttcctct ttgatcagtg ccttccgctt ggttctatgc tagcccatgg agttgtaatt
     3001 ttataaatct catcaatgac tttttgactt ttaccatttg cggttttagt ataacttacc
     3061 tttactataa gaaggataaa gtccaaaaat aggaattcca ccatacgtct tagccatttt
     3121 agaattcaca ttattaagaa atagtttgac catttgattt ttttatatcg cttaagacat
     3181 aaccccatta ttcatgataa tagcagtcaa aggagacaat ccataaggat tcattttaat
     3241 catacccatt tgtccttgaa tttgccaatc tattttcact ccactaggac cacccatggc
     3301 cattaaagca ttaggtgcaa gtagggtaga acccgccaaa attccatgca aagagttttg
     3361 ctaagtctca tgatcaatcc tttaaaatta tttaagacat cctattttaa gagtatctta
     3421 aaacgacttg atttaaacta gctatatttt gattcggatt ttttgattcg cctataaatt
     3481 taagcaccaa aaccaaagca acaatcacca atgcaaaaat tttagcatta ggtttatttt
     3541 tatctaaaac ataggctata aacattgcaa aaagcacgac aaaacaacat aaaaatgcta
     3601 taagacagca gattgccata ttcataaact ttaaactagg aatcaaatac caaccattac
     3661 tataaagccc attttcaaaa tcaggtggag ttcctataaa aaatttttga aaagcattaa
     3721 gatgattata agcattttct ggaactacag gggtatccat cccgcattct cctgttggca
     3781 aaaaccaact aggagcccat ttatacaaag gtaaattaaa tggataaata ggaatttcac
     3841 gacatccatc tacgcctgca aaaggatttt cagaatgaac cacttcatgg atatgattta
     3901 aagttagaca atgctccaag ccaagccaaa ttccataaaa agctaagcta taagaaaaaa
     3961 tttttataat attatttgca gggttgatta atgcaatcat accacctata gccataacaa
     4021 gcatatcaaa tcttatatac acacattgtt cacaaggttt cataaaaaga tattcttgaa
     4081 ataaaaaatg tgctatacaa gtaagcccta tagtaactat aatcaaaatc aaccaaggtt
     4141 tgcgcgtatc ttgccatttg gaaagtgaaa aatttctgca attatctttc atttttatat
     4201 aactcatttt tgcttgctaa gttctttagt aatttcaatc aaagcctctg gagagttgat
     4261 tgcacttgga acgatttgat attttccatt aacaacaaaa gcaggggtgc cataattttg
     4321 cgaaatagga ttggcaattt cataactttt taaaagctct gcagcctctg gagtttttaa
     4381 gaaattttca aaatcagctt tacttacatt cattgctttt aaaccgacac tataaaaagc
     4441 ttcaggattt ttaccatttt cccatctttg ttttttctta aaatatgcat taaaataagc
     4501 ttcagcaact ttatgagtta agctattttt atccgtagga tcaattttat ttacaccatc
     4561 cttaaatgtc gcaaaagcaa aaatttcatt agcttgcctt ccataatctc ccatagaact
     4621 tacaggataa aatttataag ttaaattagg taatttttct ttaactttac ccatggtatt
     4681 aaatttgcga tgatcataac aatgagtaca gtgataagaa aaaatttcaa tcaatgaatt
     4741 atcagcgtta gcaataggat ttttaagaat tacatattct ttaccttcac ttaatgcgct
     4801 agcacttata cctgctaaaa aagcacatac aacaatagat cttgctaatt ttactggaaa
     4861 tttcattacc ctctccttga aatttggttt tgataaaact ttttattaag tttttatgta
     4921 ataactatta taaaactatt aaaataaaaa tattcttaaa aaatgttata actaagaata
     4981 tttactttaa ctaaaaatca agaatagggg attaaaaaat ttaatgcaca agttatcatt
     5041 tttatgtata ttttgataat aatataaaat aatttaattt ttaaatattc tttatagttt
     5101 tcaagaaaag taaaatataa ttttaattta cgaaataaaa ttatcaattt tttacattat
     5161 attttatgga taagtttatt tcactcaaa
//
LOCUS       DAQSLY010000108         5029 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.109, whole genome shotgun sequence.
ACCESSION   DAQSLY010000108 DAQSLY010000000
VERSION     DAQSLY010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5029)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5029)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5029
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.109"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(118..567)
                     /locus_tag="R2H98_001490"
     CDS             complement(118..567)
                     /locus_tag="R2H98_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEE9024349.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(702..1919)
                     /locus_tag="R2H98_001491"
     CDS             complement(702..1919)
                     /locus_tag="R2H98_001491"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEE9024350.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLAFIKDKEHIKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCNATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILN"
     gene            complement(1913..2737)
                     /gene="galU"
                     /locus_tag="R2H98_001492"
     CDS             complement(1913..2737)
                     /gene="galU"
                     /locus_tag="R2H98_001492"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEE9024351.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEVQLTDALLTQATNGMVLAYKFQGKRFDCGSVESFVEATNYFYEKSKC"
     gene            complement(2819..4792)
                     /gene="acs"
                     /locus_tag="R2H98_001493"
     CDS             complement(2819..4792)
                     /gene="acs"
                     /locus_tag="R2H98_001493"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEE9024352.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQALEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTVIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPDLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1621 a          965 c          647 g         1796 t
ORIGIN      
        1 taacttactt caaatttagg gtggttttca taaaaaaaat taagtacttt caattttatc
       61 ctttaaaaaa ggatattata acctagtttg tataattggg gcataaagcc ccttaaatta
      121 cattttgcaa gcaccctgta aagtagcacc tatcatccaa agactttttt catattttgc
      181 aatattttct tgcgcaaaag cagctgttgt ggtatcactt tctttttctg ctgcttcatt
      241 gagtttttta aattctgcta aaagatattc ataatcttgt ttgatcagtt ctatgacttc
      301 aagcggagta aagcaatctt ttgcaacttt tggacttttt gcattttcca ttaaaacttt
      361 ttggcaagtg atagcttttt cgccaagttg taaaactctt tcagcacaac tatcaaaaag
      421 ttctgccatt tcttcataag ctttttctgt gtactcgtgt atagaaaaaa attgcaaacc
      481 ttttacattc cagtgataat tatgaaattt aacccataga tgatgagcat ctgcttgcat
      541 ttgtaataat tgttttgtaa ctgacatgat tgactccttt ttttaatttt taaaattata
      601 acataaaatt cttaaataat aattattatt aattaaaaat ttttattata attttaactt
      661 aaaattatta tactcttttt taatgaattt tgattaagaa tttaatttaa tatatttttt
      721 aagatcaact ttccaacttc cacaccaggt tgatcatagg tgttaatccc tagcataaca
      781 ccgcaagttg aagtaaaaag ttcataataa tacatcaaat atcccgcatg ccaagcatca
      841 agtttttcaa gttctatcac atcaacactc aaattttcag cgattaaagc gtgcatagtt
      901 gcattacatt gagcgtttaa aagttcgtga agattgactt tattacttaa agaatctaaa
      961 aatttaaaat gaatatcagg gataataggt gctttttgag cgtctttgat ttttaaaaaa
     1021 gttacagttt tatttttagg tccatccata atgagttgta aaaaactatg ctgatctctt
     1081 gctccaatga gtgcaatagg agttaaacct atacgtttat agccttgctt tttacctaaa
     1141 ctttcagcaa taagctggat ataccattca ttaaagcctt taaaagcatc actatatgaa
     1201 aaaagtacat tgatattggc atttttgtgt gtgcaataat gataggcttt ttgtaaaatt
     1261 tcatcttttt tatgagtaaa aaaatcttca aaacaagctt tagctccttc taaaagagct
     1321 ttggcattat agccacaaaa acaaagcgga actataccta cggctgaaag tatgctaaaa
     1381 cgacctccta catttgcagg gataaaaaag catttaatac ctaaattttc accttcttga
     1441 tgaagttttg aatccttatc ggtaataaaa acaaagtatt tttttaattc ttgcatatca
     1501 agtttaaaat gttcaataag aagtttaaaa agcgatacaa cttctatagt actacctgtt
     1561 ttgctgatga ttaaaaacaa actttcctca agcttgattt tttctaaagt cttattaaaa
     1621 gaatgtgaac ttgtgttatc gagtataaaa agttctcttt ggttgctttt ttcattaaaa
     1681 agcatatcac gcaaggcttt tacaccacaa cttgaaccac ccattcccac taaaacgata
     1741 ttttttatgt gttctttgtc tttgataaaa gccaaactct catcgattaa attcaaactt
     1801 gtatcaataa gatgataata ccctatatct ccacttttta cctcatcatt aatacgattt
     1861 gcataagaac ttatagtgtg aatttcactt tgcttaaaaa aaagtgtatt gtttaacatt
     1921 tacttttctc gtaaaaataa tttgtcgctt ctacaaagct ttctacactt ccacaatcaa
     1981 agcgttttcc ttgaaattta taagctaaaa ccataccatt ggttgcttga gttaaaagcg
     2041 cgtcggtaag ttggacttca ccattttttc ccgctttagt attttctaaa attccaaaaa
     2101 tatcaggagt taaaatatat cttcctatga tagcaagatt acttggagct tcatcaggac
     2161 ttggtttttc tatcatagaa ttaaccatga taagattttc ttctacaaaa tttccagaaa
     2221 ttactccata gtttgaaact tgctcttttg gtacttccat cacagctatg atggtgcagc
     2281 gatatttttc ataaattttt accatttgag ccataacatt taagccttct tcattaacac
     2341 acaaatcatc agccaaaatt acgccaaaag cttcatcgcc aaccaaaggt ctacctttta
     2401 aaaccgcatc acctaagcct ttcatttgat tttgtcttgt aaaagtaaag gtacaacgat
     2461 tgatcaaaga gcgaatttca tcaagtaagt attctttttt tgtacctgaa atttgatgtt
     2521 caagttcata agaaatatca aaataatcct ccaaagctct ttttccacgc cctgtgacaa
     2581 atcccatatt ttccattcct gcttctaaag cttcatcaac tccataatgg atcaaaggct
     2641 tggttaagat aggtaacatc tctttaggta aagtttttgt tgcaggtaaa aatctcgtcc
     2701 cataacctgc cgcagggaaa atacaagttt gaagcataaa aatttccttt tattttttta
     2761 tcattatagc ttatttttat gaattttcat gcaactaggc aaagttcttt ttaccttgtt
     2821 attcaaactc tgccttagct aatttaacaa tggtttctac tactttagaa tcttcaagtg
     2881 ttgaaatatc ctgtttgatt tcttcacctc ttgctatagt tcttaaaatt cttctcatta
     2941 ttttaccact tctagttttt ggcaaatctg gagtataaag aattttttct attttagcta
     3001 taggtcctat ttctactctt aaaatgtcat taagttcttt taaagtttct atagctccgc
     3061 caagatcaca actggatgca ggacttaaaa ccacaaaagc aaacaatgac tcgcccttaa
     3121 tcgtatccaa aatactcact acagctgatt ctgctacact tggatgttta gcaatagcgc
     3181 tttcaatttc agccgttcct atacgatgtc ctgcaacatt aaccacatca tctgttcttc
     3241 ctgtgatggt aatataacca tttttatcat aaaaagcacc atcgccacta aaatatacag
     3301 cttttccatc ttttttagct tgagaaaaat aactttctat atagcgttca tcattgcccc
     3361 aaattccacg aatcatcgaa ggccaaggtt tagttataca aagcaaccca tcttcacctt
     3421 catctttttt attgccttct tcatcaataa cttctgcaaa aatccctggc aaaggcaagg
     3481 tggcacaacc tggttttaaa ggagtggcgc ctggtaaagg cgtgatcata tgcccacctg
     3541 tttctgtttg ccaccaagta tcgactatag gacttttagt tccccctatt tcatcataaa
     3601 accacttcca agcactagga ttgataggct ctccaaccgt tccaagcact tcaagcgtac
     3661 ttaaatcata ttttcttggc tcattaggtg catcagcatg aagcattctt atgacagttg
     3721 gcgaagtgta gaatttgctt atttgatact cttctatcat tctccaccaa cgcccagaat
     3781 ttggataagt aggagttcct tcatgcatta tagtcgttgc tccacatgct aaaggcccat
     3841 aaactacata agtatgtcct gtaatccaac ccacatcagc actacaccaa taattatcat
     3901 aatctttaat atcaaaaacc cattccatag tcatttgtgc ccaaagtata tatcctgcac
     3961 ttgcatgcat aactcctttt ggcttgcctg ttgatcctga agtgtaaagc aaaaacaaca
     4021 aatcctcact atccataatt tcgggttcac acttataaga ctcatttttc acaagttcgt
     4081 tataaacata gtcccttcct ttaatatatt ctataggctc attattgcgt ataactataa
     4141 gtactttttc tacactttca cacccttcac ttaaagcctt atctactgca ggttttaaca
     4201 tataaggttt gccacgacga aaagcaccat cagccgttac tacaagttta gctcctgcat
     4261 ctataattct atctcttaag gcttcaggag aaaaccctcc aaatactaca ctatgaatag
     4321 ccccaatcct tgcgcaagct aacattacta tagctgtttc tggaatcata ggcatataaa
     4381 ttacaaccct atcgcctttt tttactccga attttttaag caaattggcc gccttgcaag
     4441 tttcatgcaa taatcttcta taagtataaa cttcataatc tcccatttca ccttcaaaaa
     4501 tcaaagcagc tttattgcgt cttgttttca tatgacgatc aagacattga taacttacat
     4561 ttaaagttcc accttcaaac catttataaa atggagcttt atcctcattt aacactcttg
     4621 aaaaaggcga aaaccactcg atcttctcaa gtgcttgtct tttccaaaaa ccttcaaaat
     4681 cttccttggc ttcatcgcat aaatcatagt attcacataa attttttata cgagcattac
     4741 gagaaaattc tttacttggc ttaaaaagct cttgattatt ttgattaagc ataaaaactc
     4801 cttatatggt tatttttaaa cattatataa gagtttattt gtattaaata caaatttaaa
     4861 aaataattaa tataaatttt ataaaaaatg ggaatatttg taatatttta tttaaatttt
     4921 ataatgtatg ttaatttaag aaacatattg catcttcata aaaataaaga ctgagttctt
     4981 cgtataattt taaatcgaat tttaaaaatt cttgtttttc taaggcaaa
//
LOCUS       DAQSLY010000109         4998 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.110, whole genome shotgun sequence.
ACCESSION   DAQSLY010000109 DAQSLY010000000
VERSION     DAQSLY010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.110"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..657
                     /locus_tag="R2H98_001494"
     CDS             <1..657
                     /locus_tag="R2H98_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9024353.1"
                     /translation="LAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIPTIWFQSLGG
                     LFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASNHAISLNGDA
                     NTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPNLIKSQVMGL
                     WFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILKKPINKILKN
                     "
     gene            673..2463
                     /locus_tag="R2H98_001495"
     CDS             673..2463
                     /locus_tag="R2H98_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEE9024354.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFTTIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(2584..4389)
                     /gene="mrdA"
                     /locus_tag="R2H98_001496"
     CDS             complement(2584..4389)
                     /gene="mrdA"
                     /locus_tag="R2H98_001496"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEE9024355.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLNVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(4390..4884)
                     /locus_tag="R2H98_001497"
     CDS             complement(4390..4884)
                     /locus_tag="R2H98_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024356.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(4881..>4998)
                     /locus_tag="R2H98_001498"
     CDS             complement(4881..>4998)
                     /locus_tag="R2H98_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEE9024357.1"
                     /translation="KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
BASE COUNT         1856 a          805 c          695 g         1642 t
ORIGIN      
        1 ttagcggctg cgttattttg gtcagtatat gagcaacaat acacttcttt taattttttt
       61 gcagaaaaat taacagataa aaccatatta aattatgaaa ttcctacaat atggtttcaa
      121 tctcttggag gtttatttgt tatacttttt gcacctttta gtgcttttat atggactata
      181 tgtgccaaaa ataataaaga aatttcatct attattaaat ttgcattagg acttttgggt
      241 gcagctttgg catttttaat aatggcttta gcttcaaatc atgcaattag tttaaatggc
      301 gatgctaata cattaagaga aaatttagaa aattcatcac aaattatttt agtttcacct
      361 tggtggcttg tcagtagctt tttgcttatg gttttaggag agctttgcct ttcccctgtg
      421 ggactttcta taatgacaaa aattgcacct aatttaatta aatctcaagt catgggactt
      481 tggtttgtag caagtgcatt aggcaatgct ttagctggat tcataggtgg taaagcaagt
      541 gaagaaaata tagcttattt gccaaattta ttttaccaat gtatgtggat attacttggt
      601 gctgttataa ttttacttat actcaaaaaa cctatcaata aaatactaaa aaattaatat
      661 taaggagaaa atatgagtat ttacaaacaa agagtattag aacttagaag attaatgaaa
      721 gaaaataata ttgacgccta tctcatctta agcgcggatc cgcatttgag cgaatattta
      781 ccagaatatt acaaaaacag agtctttatc agtggcttta agggttctgt tggaacagtt
      841 cttatcacac aagaagaggg ctttttgtgg gtagatggaa gatattggct tcaagcacaa
      901 aaggaattag aaggtagtgg catactttta caaaagcaag atgctaaaaa tacttttacc
      961 aaatggttgg aaaagaattt aagcgaagat caaattttag gcatcgattt tgcactttta
     1021 cctttatctt tgcaaaaaga tttaaagatt aattgcaagg caaatttaaa acatatagat
     1081 ttgataagtc cactttggaa agatcgtccc actttaccac aagaaaaaat ttatgaacac
     1141 gaactagaat actgctctta ctcaagaaaa gaaaaattag cattagtgcg tcaaaaaatg
     1201 aaaaatttaa atgttacctc tcatttaatc tccagccttg atgatatagc ttggcttaca
     1261 aatttaagag ggaatgatgt aaattataat cctgtatttt taagtcattt gctaatcttg
     1321 gaagacaaag ccttgctttt tgttgatcag aaaaaagtaa attcagaact tgaaaaaaaa
     1381 ttaaatttag atgggttttg gcttaaaaat tatgatgaaa tcatcatgga gcttgaaaaa
     1441 cttgcaaata caaatttgct tattgaacct tcaaaaatga ccgctttact cataaattct
     1501 ttagataaaa gcgtaaaaat cattcaagaa attaatccaa gcactcactt aaaagcagct
     1561 aaaaatacaa aagaaatagc gcatatacaa gatgctatga tagaagatgg agtggcttta
     1621 tgtaaatttt ttgcctggct tgaagaagcg atagaaaata aagaactaat aagcgaatta
     1681 gacatagatg ttaaagcaag cgaatttaga gcacaaagca agtactacat aagtgatagt
     1741 tttaccacta tagcaggctt taacgaaaat gcagcatatc cacattataa agccacaaaa
     1801 gagagttttg cttatcttaa aaaagatggg cttttactta ttgattctgg tggacaatat
     1861 aaaaacggca caacagatat tacacgcgtt gtaccaatag gaaaggctaa tgcagaacaa
     1921 attcatgact ataccttggt tttaaaagca catattgcca tttccagtgc aatttttcca
     1981 aaagatatag ctatgccctt acttgatgca atcacacgcg cacctttatg gaaagaacaa
     2041 attgactata tacacggcac aggacatggc gtgggatatt ttttaaatgt ccatgaaggt
     2101 ccacaagttt tatcttatct atcccctgtg cttgaaaaaa caaaagccaa agaaggtatg
     2161 ctaacctcca tagagccagg tatttataaa gtaggtaaat ggggcataag acttgaaaat
     2221 ttagttattc ataccaaagt agaaaatcct aaaaataaag attttggaga gtttttatac
     2281 tttaaacctg ttactctttg tccttttgaa atatcttgta ttgatacaaa aatgttagat
     2341 gaaaaagaaa aagaatggtt aaacaattat cacaaagaag tatttgaaaa actttctcct
     2401 aagctaggtg attatccaaa agctctagtt tggcttgaaa aaagaacaaa agccatcttt
     2461 taagatactt ttgttaacat agataaattt tccttgtatt aaacttataa tttgtttaat
     2521 acaagatttt taaaccaatt gctaaaaaag ttttttttga aaaactcaat ttacaactaa
     2581 aaattattta aaatatccaa gttcaatcat tttttgataa attttagcta cagttgcccc
     2641 tgaagtaata tttctcccac catgttccaa aagaacggta actacatatt ttggcttaga
     2701 ataaggagca taagaagtaa gccacgcatg agatctagta taatactcaa attgtttttc
     2761 atcaacccta tttttatctg tttgtgaaaa tcccacaacc tgagcagttc ctgtttttgc
     2821 tgcaactttc acattaagat tatgcaaata acgataagag gttcctcctt gctcattagc
     2881 aacagcatac attgcatctc ttatataagg caattgactc ttttcaaaca aagtaaaaat
     2941 ttctttttta ttttcatcca tttgattttc tatagttgta ttattatttt ctatgctttt
     3001 taaaaaatga ggtataacct ctccaccttt tgcgatttga gccgtatatc tagcaatttg
     3061 cataggtgtt gcaagaaaat taccttgacc tatagctgta tttaaagtat caccttgaaa
     3121 ccaagattgt ctatatcttt gcatcttcca ttctttgctt ggtaaagttc ctacaaattc
     3181 actaggtaaa tctacccctg ttttcgctcc aaagccaatg cgagataaag tttcacttat
     3241 ttgatcgatt ccaacttgca aactgccatt ataaaaataa acatcacaac tatattttat
     3301 cgcatgtttt aaatccacag gtccatggcc tgatcgattc caacatctaa aaaacctgcc
     3361 tccaagttca atgcttccat tgcaaacata ttgagtcgac gggctaatat ttttagaatt
     3421 taaaaaagaa agccctactc ccatttttac aacagaacct ggaggataat atccatttat
     3481 aagtttattt gtaaaaggat gatcaagact atttgaaagc tcatcccaat ccttaaaaga
     3541 aatccctgtt acaaaaggat taagatcata ttcagggaaa ctccctgcag ctaaaataga
     3601 tccatcattt acattcataa ttatagcagc tccagcattc ccttcaaaca atgaagttaa
     3661 ataagactga agctctatat ctatcgtaag ttctatatca ttagacatag caggagtgta
     3721 agaaagctgt tctacttctt gatttaaggc attaacctta taaaccctag ttcctttttc
     3781 tccttgtaaa atatcattat aatagcgttc tataccgctt tttcccgtat agttagaaag
     3841 ttttgctatt tcattttctt gaacatcttg caaatttgcc ttacctacat acccaataat
     3901 atgcgaagcc aattttccaa aaggatattt tctttttaca acaggatcta tttttattgt
     3961 tttattaaga tttaactctg aataatgcgg aataatctca tcgtagggta taaaatctac
     4021 aactttaata aaatcttgat tatagtaaga atcatttctc ttataaattt ctgctaattt
     4081 actagcattt aaatcaggaa ataaatttgt aagttcagat aattctttat ctaaaattcc
     4141 tttatttgac tttttaatac ttaaataagg tttaatagaa atactaaaac ccaaatcatt
     4201 aatagccaat aaagttccat ttctatctgt aatttgaccc ctaacaggtg gtaaaaattc
     4261 agtttttatg gcattttgtt tagcaagctc ttcataatat acatttgatt ttatactcaa
     4321 ataatacaca cgacttaata aaaatataaa aaacaatagt ataaatccaa caactagacg
     4381 cattctcatt taaattttac ctttaaaaaa cacataagct aaacaacatt ctataaaaac
     4441 tgaaacaata tacgcccatc ctaaaatttt aattttttca tctccaatat aaaacaatat
     4501 catatccaaa aacaaaataa tgccgtaagc acaaagcaca aaaacaacag ggataaattt
     4561 accaattttt aaatttgtct taatccaatc tgcacaaaga taataaaaaa taaaaaatgc
     4621 caaccaagat gaaaaaataa aaaaattata agttatatca gtaaaaaata aaaaaaataa
     4681 agaaaaatac catctaaaat caagctttga aaaagttctc tctctctctt ctaataagca
     4741 aaacatataa cagaaaaaaa tcccataaag taacggggta tatacaaaag tcgaaccaag
     4801 aatctgataa attagaaaaa aaaatcctaa aaagacataa gctccattaa attttgcttt
     4861 ataagcactt aaatttcttc tcatttatca agacctaaag tttgattgat aataatatct
     4921 tctaaagaat caaggccaaa tttattcaaa tttgaaacta aaatagagtc tttaaattca
     4981 ttttttaact tagctttt
//
LOCUS       DAQSLY010000110         4930 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.111, whole genome shotgun sequence.
ACCESSION   DAQSLY010000110 DAQSLY010000000
VERSION     DAQSLY010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.111"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(154..912)
                     /gene="map"
                     /locus_tag="R2H98_001499"
     CDS             complement(154..912)
                     /gene="map"
                     /locus_tag="R2H98_001499"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEE9024358.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYSFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(922..1665)
                     /locus_tag="R2H98_001500"
     CDS             complement(922..1665)
                     /locus_tag="R2H98_001500"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEE9024359.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVESLKNTANIWLNL"
     gene            complement(1667..2125)
                     /locus_tag="R2H98_001501"
     CDS             complement(1667..2125)
                     /locus_tag="R2H98_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEE9024360.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(2134..3303)
                     /gene="nhaA"
                     /locus_tag="R2H98_001502"
     CDS             complement(2134..3303)
                     /gene="nhaA"
                     /locus_tag="R2H98_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEE9024361.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(3300..4448)
                     /gene="nhaA"
                     /locus_tag="R2H98_001503"
     CDS             complement(3300..4448)
                     /gene="nhaA"
                     /locus_tag="R2H98_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEE9024362.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSAIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(4591..4773)
                     /locus_tag="R2H98_001504"
     CDS             complement(4591..4773)
                     /locus_tag="R2H98_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEE9024363.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1873 a          920 c          594 g         1543 t
ORIGIN      
        1 aatacgatgt gacattttat tctaaaaaca cttaatctgc tataaaaata tcatttagta
       61 acttaactta ttaaagaata ttactacaat attattaaaa aattttaaat ttttaggatt
      121 ttaagaaaaa aatattattt ttataattta atatcatatc atagaaagaa tttcagcacg
      181 cccattaatc acggcaacac aatgttcata atgagccgca ttcagcccat caatacttcc
      241 agcatcccat tttccattat aatgctttgg tgttccatct ttttggcata tcataggctc
      301 tatgcaaaac accattccat ttttaatttt agggccactt tttgcactcg cacctttttc
      361 taaatagttt aaaatttcag gctctccatg gggctttcgt cctataccat gcccgcaata
      421 tccacgaagc gggacaaaac ctcttgcatg gataaattcg cctaaagcag ctgaaagttc
      481 cttaaaacgc attccatcac gaataatatc tatagcatga tataacgcgt ctttagcaca
      541 agagattaaa gctttatcag cgggtgaaac ttctcctata gcaatagttc ttgctgcatc
      601 cccataatac ccatcaatca aacttcccac atcaagacct aaaatatcac cctctttgat
      661 aattttatca tctggaattc catggataca aacttgattt aaagatgtgc aaatggcacc
      721 tggaaaacta taaagtccct taaatgatgg cttggcgcca aggcttaaaa tataatcttc
      781 tgccatttta tcgatttgtt ttaagctcat tcctatttta atttcattct ctaaaaaatt
      841 taaagttttt gctacaattt gatttgctat tcttaatttt tctatttcat ctggtttttt
      901 caattctatc attttatttc cttataaatt tagccaaatg ttagcagtat tttttaaaga
      961 ttcaacatcg cttgaagcat aaaaatgtaa ttttgcttta tgatttttca aatctatatt
     1021 ttctctttct ttaagaaatt caactatagc atctcctgaa tgaattaatt ttgttttatc
     1081 accaaaatac ttacttaaag aacgacctag taaagggaaa tgagtgcaag cgagtatcaa
     1141 agcatctgga gttgtgatat ttttaaaata atactccata gcactttgca aaaaatctcc
     1201 ttcaaaaata ccttcttcaa ccataggcac aaaaagtcct gtagctaaag catttatatt
     1261 tgtatatcct tgggataata aacgcttttg gtattcttct gatttaatgg ttgcttttgt
     1321 tgcaatgact aaaatttctt tatttttatc atgcaaagct tttatcgttg cttcaacccc
     1381 tgcatcaatt acaccatata ctggaaaatg tgcttttgtc cttaaagcat ctaaagcata
     1441 agcactagca gtattacatg caatgataag catatcaatt tgaaattgtt caaaaaattc
     1501 caatgcttca agacagaact ttataatagt atctttatct tttactccat aaggaactct
     1561 tgcggtatct ccataataga taatttcatc aaaaagtcta gcttcataaa gagattttaa
     1621 aacgctaagc ccccctaccc cgctatcaaa tacacctatt ttcactttaa taccttcttg
     1681 ctcctatata acgagccttc caataagaac tatttagctc gacttctttt actccacctt
     1741 tagtagataa atgtataaat tttcccttgc tcatataaat accaacatgc ataccatttg
     1801 gccctctacc tgtcttaaaa aataccaaat ctcctgtttg caattttgat ttagaaactt
     1861 ttcttccaga acctaattga gtttttgtag tgcgaggtat gcgtatatta agctgagcta
     1921 atgcgctctg tgtaaatcct gaacaatcag cacctttttt actagttcca cctaaaacat
     1981 aaggggtttt tttccattca tttgcaataa ccttgagcct tgcttcttta tttgtgttgt
     2041 aactaggacg atagtttaga ttctgataaa aactacatcc acttataaaa aatataatcg
     2101 taataataaa aaaaatatgc ctcatcaatc cccttaagat cgagtagtaa agaatttaag
     2161 ataaataaaa ccccaaatcc cagaacaaaa tgaggctata agaatagcta agttatctgc
     2221 ataattaaaa atatcactaa cttcatacgc caatccatca ataaacaaac tcattgtaaa
     2281 accaattcct gtaagtatgc aaaccccata aagttgtttc aaatttgaac cttggggcaa
     2341 agctgcaaat ttaaagcgga ttgccaaata agaaaacaaa aatacaccca cttgtttacc
     2401 cacaaaaagc cccaagaaaa tacctatact tacacctgaa aaaattgctc ctatatcgat
     2461 attggataaa tttaccccag cgttagcaaa agcaaataaa ggcaagataa caaaagcgag
     2521 ccaaaatttt agactttcat agatttcttc taaaaatgct tctccatttt tagtttgcat
     2581 cggtataaaa aatgctgtta tgattccagc taaagttgca tgcacaccac tttttaaaac
     2641 actaatccaa agaataactg agcaaataaa ataaaaagac tttcttgtta ttcctaaaat
     2701 atttaaaaca agcattgcca aaatagcaat tcctgcaacg acaaaagcag ctattgataa
     2761 ttttgtcgta taaaaaatag ctataattaa aatagcaccc acatcatcaa aaatagccaa
     2821 agaaagtaag aaaattttta aacttgatgg aatatgcttg ccacacatca ttaaaatcgc
     2881 taaggcaaac gctgtatctg tagctgtagg tatagcccaa ccttttaaag tataagcatc
     2941 tcctatattt accaaagcaa acaacatcgc aggtataagt atacccccta aagcagccat
     3001 aaaaggtaaa acaatatttt taggattttt aaaatcccca tgcaaaaatt ccttcttaag
     3061 ctcaagccct atagcaaaga aaaatataga tataagccca tcatttatcc aaagtaaaaa
     3121 aggcttgtta agctcaaatt cacctacact aaatccgact tttaaattta gaaattctcg
     3181 ataatgttcg ctaaaagacc cgttttgcac aagcaaagca agcaaagtac aaactataag
     3241 taaaacgccg ccaaaagcct catttaaaac taaagttttt aatttatgta ctatattatt
     3301 catttaacaa tcttaagata aataaaacca acaatggcac ttaaaaaact agctactaaa
     3361 atagcaagtt tatccgcata ttcaaaaata tcactatttt tataagccaa accatcaata
     3421 aacaagctca tcgtaaaacc gatgcctgtt aaaatacata taccataaaa ttttccatat
     3481 ttaatatttt caggtaattt tgcaagttta agtttgatag caataaaaca aaaagtgaaa
     3541 acacctaatt gttttcctaa aaatagtcct aaaataatcc caagacttac aggagaaaat
     3601 actgaaccaa gatgcatatc tctaatatca attccagcat tggcaaaagc aaataaaggt
     3661 aaaataaaat aaactaccca aggatttaaa tccttaagaa cttcatgtaa ataaggtttt
     3721 ttattttttg tatcaagagg tataaacaaa gaaatgatca caccagccaa agttgcatgt
     3781 actccacttt taagcatagc tatccacaac acaacaccta ccaacacgta caaagaaaga
     3841 tgggtgatgt gataataatt taacaaaagc agagcaaata tacaaaacaa acaaataata
     3901 attgctaaag ctgaaagctg atctgtataa aacaaagcaa taataacaat agcacccaaa
     3961 tcatcaaaaa tagctaaaga gagtaaaaaa agttttaaac ttgtaggaat tttatttccc
     4021 aaaagcatta aaatacccac tgcaaaagct atatcagttg ctgtaggtat tgcccaacct
     4081 ttcatagcaa aatcatgaga ataattaata gcaataaaaa ttaaagccgg agtaatcata
     4141 ccccctaaag ctccgaatat aggtaaagat acagctctta tatttttaag ttgcccacgt
     4201 aaaatttcat attttaactc aagccctata catagaaaaa atatagctat caaaccatca
     4261 tttatccata aatccaacga ctttgaaatt tgaaaatgat caaatcctac tgtaaaatta
     4321 gcatgaaaaa aatctgtata aatagcactt aaagaagaat ttttacataa taaagctaaa
     4381 aatgtaaaaa atataagcaa aataccaggg aaagtttcac ttaaaaccat cttctttatc
     4441 atttgcatcc ttgctcctaa gtaaatattt gtaaaaattt aatacgataa ataaaatggt
     4501 aaaattataa cgaaaaaata ctaaagaaat aattatttaa aaaaacaagc ccaagatacc
     4561 aaaaagttct taagcttgtt cttaagatat ttaagcgtaa atatccaaac cactagagct
     4621 agaagcttgt ggagcggagg cttgagagac accttccata ccttcgatga gttcattcat
     4681 caatgcctcg tttgtgtcca tagatttttt caaaactgaa gtattaacag cagtcattaa
     4741 attaacatta cccatagaaa catctgaaac catacatcct ccttttagat tgagtcttaa
     4801 gactttattt aaatcggatg atatttttaa aacttaatat tttttactaa actttttaaa
     4861 atttttcaag ggaactaata tctgaaatta aaaatcataa attttttaag ataaaatcct
     4921 attttaaaaa
//
LOCUS       DAQSLY010000111         4897 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.112, whole genome shotgun sequence.
ACCESSION   DAQSLY010000111 DAQSLY010000000
VERSION     DAQSLY010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.112"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..69)
                     /locus_tag="R2H98_001505"
     CDS             complement(<1..69)
                     /locus_tag="R2H98_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEE9024364.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYTQ"
     gene            162..635
                     /gene="moaC"
                     /locus_tag="R2H98_001506"
     CDS             162..635
                     /gene="moaC"
                     /locus_tag="R2H98_001506"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEE9024365.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKIETDIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            613..876
                     /locus_tag="R2H98_001507"
     CDS             613..876
                     /locus_tag="R2H98_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEE9024366.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHIKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            866..2026
                     /locus_tag="R2H98_001508"
     CDS             866..2026
                     /locus_tag="R2H98_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024367.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVAKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(2045..2803)
                     /gene="xth"
                     /locus_tag="R2H98_001509"
     CDS             complement(2045..2803)
                     /gene="xth"
                     /locus_tag="R2H98_001509"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEE9024368.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KQIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            2921..4459
                     /gene="eptC"
                     /locus_tag="R2H98_001510"
     CDS             2921..4459
                     /gene="eptC"
                     /locus_tag="R2H98_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEE9024369.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFAIVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNILVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDNEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            4456..4812
                     /locus_tag="R2H98_001511"
     CDS             4456..4812
                     /locus_tag="R2H98_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEE9024370.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIICSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWSFILYSIYL"
     gene            4809..>4897
                     /locus_tag="R2H98_001512"
     CDS             4809..>4897
                     /locus_tag="R2H98_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR family transcriptional regulator"
                     /protein_id="HEE9024371.1"
                     /translation="MKFENLIQEILGKKRFELLKFLCENADENG"
BASE COUNT         1739 a          580 c          769 g         1809 t
ORIGIN      
        1 ttgtgtatat tcttcatctt cattttcata atcatcgtaa tttaaatctt cttcatcttc
       61 ataagccatt gttttctcct taaataaaaa tacaaagctt attttatctt aaatttgttt
      121 ggttttgcta taatttttat aattttttaa aaggtgaatt tatgaaatta agtcatttag
      181 atgaaaaaaa tcatcctaaa atggtagatg taagcgataa aaatattact ttaagaatag
      241 ccacagccag tggtataata tatatgagtc aagaagcttt tgatgtaatt aaaaacaata
      301 ccgcaaaaaa aggtcctgtt cttcaaacgg ctattattgc ggctataatg ggggctaaaa
      361 aaacaagtga aattattcct atgtgccatc ctttgatgct ttctaagatt gaaacagata
      421 ttgtggaatt tgttaaagaa tgtgcattta agcttattgt aacagttaag tgtgaaggta
      481 aaacaggagt tgaaatggaa gctttaagtg gagttagtat aggactttta actatatatg
      541 atatgatcaa ggctatagat aaatcaatga gaattacgga tatagtgctt gaaagcaaag
      601 aaggaggtaa aagtggtaaa tttgtgcgat cttaaaaaag aacctcagat caattatcct
      661 actttttggg attataaggt gatttttgag gtgcatatta aggcaagtga aatttttgaa
      721 gaaattttag gtcaaagaga atataaattt gaacattcga attcaagtgc gagtggaaaa
      781 tatcaaagtt atttgttaaa tgtttatgtt gatagcaaaa aagatcgttt ggatatattt
      841 gataaattaa aagctaaagc aaaatttgta ctttaagaaa gaaggaaaaa tgaaaaatac
      901 tttaattatt tttgaaaatt ctttatcaaa tctcggtaaa gatgaagcaa gtgatttact
      961 tgaagacttg agttttaatc ttgcgtataa gcaaatttca cataatcctc atgaaacaaa
     1021 aaaagtttta aattctcttt tggttgaatt tttaactatt ttgaaaaaac ttgatttttt
     1081 tgatgatgaa aatgttgcaa aggttatcaa agctttggtt aaggcgagta ttgtagatgc
     1141 tcaaaattca ctttatgagt atattagcga agctgaatta ttaaacaaac agattgaaaa
     1201 tcaaaagaat ttgattaaaa atcaaatcag cgataatttt tttgaattcg agaatatttt
     1261 acaagaatgt tctttttgtg atgaatttag tggcggttta aatgatgcta ttttatttga
     1321 tatagaaatg cttggaattt taaaagaaac cgctgaaagt gcttttttaa ctacattaga
     1381 aaaggctgaa gatatagaac ttacaagtag tgaaatagct aaaaatctcg tatataatgc
     1441 catttgtgaa gctcattttg aaaaagaaag aattttaaaa atttcaagta ttattttaaa
     1501 taccgctttt gaaatagcta atgaatctat ggcttatgca aaagatcttt gtttaggcgt
     1561 gattaaaggc acaagggatg gtattgtttt ggcaatggaa aaatttaaag cttcattaac
     1621 ttatgcaaat tttgaagaag atgttagttt aaaaagcaaa gaactaatag gtatagaaga
     1681 tgattttatt gctcttttaa aaaaagagat tcaattacaa aatgatcctt gtaagagtat
     1741 agttgagaat ttgctagaac atgaacttga taatcttttt gctaaattta gacgtcttgc
     1801 aggtgaaagc agagagcaac taatattagt tttaaatgat attaagaaaa atccaaagat
     1861 taatgatttt aacaaactta ctcaaagaaa attaaatcgt tttaaacaag aaatttttga
     1921 attagaaaaa attgctagtg aaaaatacaa agatttaaat tccaaaaaag ctaaaaagct
     1981 cggtgtaaga ctttgggaaa aagcaaaaaa attcgttaaa aaataatatc ccatttttgg
     2041 gatattaaat atctatttct atacctacag gtgcgtgatc agagccaaaa atatcatctc
     2101 ttatgaaagc gtttttaagt ttatctttta aaccctttga aatgaaaaaa taatcaatcc
     2161 tccagcctac atttctttct cttgctttca ttctatagct ccaccacgag tatttttctt
     2221 tgatttcacc attaatttct ctaaaagtat ctataaaacc aagttttagc aaatcatcaa
     2281 tccaagctct ttctataggt aaaaaacctg aagtgttggc attggctttt ggatgagtaa
     2341 gatcgatttc tttatgagcg gtattgacat caccacaaat aataatttca aatccatcct
     2401 ttaaaagctt atccaaatac actaaaaaat ctgcataaaa tttcatctta aaatttaaac
     2461 gctcttcatc tttttgacca tttggaaaat agatattaaa aagtgcaata tttttaaagc
     2521 ggtgttctaa aaccctacct tcttcatcat caaaaaattc gcattttttt acttcgctat
     2581 taaaattaca aagactcatt accccagaat accccgctct tttagcagaa ttaaaataca
     2641 tgtgtttaaa aggatattca taaatttgtt taggaaattt atcttcatgt gctttgattt
     2701 cttgaaaacc tataaaatca atttgttctt gtgctatcca atcaagtgca tttttatcac
     2761 aaatagctct taagccattg acattccatg aaagtagttt cattattttc cttaaaattt
     2821 tcattaaaag tgtaaatcat aacataaaaa gatttcaaac tacaatccat ttaaaaaaat
     2881 tcaataaaat taaaagctta aatttggagg tgggatttat atgcttagat taacttggct
     2941 tcagtttact ttttttaatt ctttgatgat tgtattgttg aattttaatt tattttattt
     3001 tgtgtatgaa aaaaatacac aaaactggtt tataactttt gtttttattg tggcctattt
     3061 tgccattgtt cacgtgattt gctctttgct ttttataaag ttttttacta aatttttttc
     3121 tatattattt ataatatcat cttttttaag tgtttacttt attagttttt atggggtgct
     3181 tatagattct gatatgatac aaaatgttgt tcaaacagat atcaaagaag taaaagattt
     3241 gttaaattta aaattaatct tatttgttgt tttggcttta ttgttggttt tttatgttgt
     3301 taaagtaaaa attgattatt atggtagttt taaatcccat ctaaaaatta aaattatcaa
     3361 tataatatca ggtttgattg ttgtttgtgc ggttttaatc cctttaagta aaactttctt
     3421 gccttttttt agaaactata atgaaataag aatgtataat accccttttt atcaaattta
     3481 tgccgtatat cgctattatg ttcgttttgt aaaagctaag ccagaattta aaactatagc
     3541 taatgatgct tatagagaaa acaatcacac taaaaaactt ttagttttgg tagtgggtga
     3601 aaccgctaga gcggcaaatt actctttggg tggatatgct aaaaatgata ccaattttta
     3661 taccaaaaaa gataatgtag tgttttttga taatttttca tcatgtggaa cagcaacagc
     3721 ggtaagttta ccttgtatgt tttctatttc taagcgtgaa aattattcaa gttcagaatt
     3781 tcaagaaaat gcgatggatg tgctttataa aacaggtgta gatactgcat ggtttgataa
     3841 taattctggt ggttgtaaag gggtttgtga tagattagct tataagcaaa agctttctag
     3901 tgatttggat gaaaatttac tcgctccttt taaagaaaaa ttaaatcatt taagtgatca
     3961 aaatatatta gttcttcatt tgcaaggttc tcatgggcca acttattata aacgctatcc
     4021 aagtgaattt aaaaaattca ctccaacttg tgatactaat gagctttcaa aatgtgataa
     4081 cgaggcttta atcaacactt atgacaatac tttactttat acagattatc ttttaagtga
     4141 gattataaaa ctattaaaag agcaaaaaag ctatgaaagt tctttgtttt atctttcaga
     4201 tcatggtgaa agtttgggtg aaaatgatat ttatcttcat ggtatgcctt atgctatagc
     4261 gccaagttat caaacccgta ttcctgctat tttttggagc aatgatgaaa aattaatgaa
     4321 tttagctaaa gagcataaag gtttaaaact ttctcaagat aatcttttta gtactctttt
     4381 aggatatttt gatgtaaaaa caagtgttta tgagccagaa tatgatttat taaatcctaa
     4441 acttaaggca aatccatgaa gcctaaatat cattttttaa ataatgcaag atatgcttta
     4501 gaagggattt ttgctttatt taaaaatgaa atggcgttta gaattgaact ttgtattatt
     4561 atcccagcga taatttgtag ttttttctta aaagttagtt ttttggagca tttattgttg
     4621 gtaagtgttt taatgcttat tttaattatc gaggctttaa attcggctat tgaagcttgt
     4681 gttgatttga ttacaaatga atggcatgaa aaggcaaaaa ttgctaaaga ttgtgcgagt
     4741 gcggcagtgt tttttagtgt gcttttagct ctttttgttt ggagttttat tttatatagt
     4801 atttacttat gaaatttgaa aatttaatac aagaaatttt gggaaaaaag cgttttgaat
     4861 tgttaaaatt tttatgcgaa aatgccgatg aaaatgg
//
LOCUS       DAQSLY010000112         4847 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.113, whole genome shotgun sequence.
ACCESSION   DAQSLY010000112 DAQSLY010000000
VERSION     DAQSLY010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4847
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.113"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(49..1197)
                     /gene="nspC"
                     /locus_tag="R2H98_001513"
     CDS             complement(49..1197)
                     /gene="nspC"
                     /locus_tag="R2H98_001513"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEE9024372.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLDRKNELQMIREFSYKDYSLRN"
     gene            1321..2862
                     /gene="cueO"
                     /locus_tag="R2H98_001514"
     CDS             1321..2862
                     /gene="cueO"
                     /locus_tag="R2H98_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEE9024373.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLMPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFKIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKERDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPQIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANISLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2864..3085
                     /locus_tag="R2H98_001515"
     CDS             2864..3085
                     /locus_tag="R2H98_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEE9024374.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            3086..3532
                     /locus_tag="R2H98_001516"
     CDS             3086..3532
                     /locus_tag="R2H98_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEE9024375.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFNEWQKRVDSDGISLLFAHSIGDVVVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3536..4726
                     /locus_tag="R2H98_001517"
     CDS             3536..4726
                     /locus_tag="R2H98_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEE9024376.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILITTGGVSMGDFDFLKKAVKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILSSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDI
                     IFMP"
BASE COUNT         1745 a          783 c          794 g         1525 t
ORIGIN      
        1 gattctcttc cgagtaaaat taacatttta tgcaaattat aaataatact aatttcttaa
       61 agaataatcc ttataagaaa attctcttat catttgaagt tcatttttac ggtctaaaag
      121 catgagattt ggaagtctta taccattaaa agttgtgttt ttcacaatgg tgtaatgaat
      181 ttgatctaaa aaaacaattt tatcgccgat tttaagcttt ttatcaaagg cgtattctcc
      241 cattacatca cctgctaaac aagtatttcc agtaagcaaa taggaaaatt cgctttcttt
      301 taagtctgaa attttttcat tttctcttgt ggccaaaatt ctagcattta aaacttcact
      361 tgtataaggc atgatgatag tatctggcat atgtgcttcg cttgaagtat ctaaaatagc
      421 aatttgtttt tcattttcta tgatatctac tacactagcc accaaatttc ctgtttgcca
      481 acccaccgct tcgcctggtt caagataaac ttgcacgcca tatttatcac tgaaattttt
      541 acacaaagca ataagttttt caacatcata gcctttttta gtgatgtgat gtcctcctcc
      601 aaaattcacc catttcattt gccctatcca tttgccaaat ttctcttcaa aagcctttaa
      661 aactgcttct aaagcatcag cactttcttc acaaagtgcg tgaaaatgaa gtccttctat
      721 agcatttaaa tccacatttt caaaatcttt agcacgaatt ccaagtcttg agtatcttcc
      781 acaaggattg taaagttctt ttggggctag agaaaattca acattacaac gaagacctaa
      841 ggaatttttt tgtgttttag cttgaaattt atgaaattgg gctaaagagt taaacactat
      901 atgatgagat aaactggcta tttcacctat ttcatcttct ttaaaagcag gtgaataagt
      961 atgaatttct ttatccatgt attctttagc aaattttgct tcccaaagtc cgctacaagt
     1021 acaacctttt aggtattctc caacaatttt catcgctcct gaaaaagcaa aaccttttaa
     1081 agctaaaagc actttagcac cacttttttc accaacactt gctaaaagct cacaattttt
     1141 tcttaattta tcttcttcta aaatataagc tggagtttga attttttcat aaaacattat
     1201 ttttccttga ttaaattgct aaaatcataa caaaattaaa ccaaattttc aaaataaata
     1261 tttactaaag ttaaaaaaat aatgactata atacaaaaaa tcaagcaaaa ggaaaaacta
     1321 atgaatagaa gaaatttttt aaaatttaat gcactcactc tagcaagtat gggtgtagcc
     1381 tatgcaaatc ctatgcacga tatgcactcc atgcataaaa atcattctat aaatcatgac
     1441 ttagatactt cttttatcaa ctttgctcca aaaaatttaa aacttttaga tccaaaacaa
     1501 ttcccccaag gagaaatttt aaaagccttg cctttactca aaaatgaaag taaagaaaaa
     1561 aatatttttc gtgctaccct agaaatcaaa gaaaatcata tagagcttat caaaggtaaa
     1621 aaaaccttat tttatactta caatggcctc atgcctgctc caaaaataga agtttttgaa
     1681 ggagataaac ttgaaatttt agtcaaaaac aaactcaaag aagctacaac tatacattgg
     1741 catggcgttc ctgtgccgcc tgatcaagat ggaagcccac atgatcctat tttagcagga
     1801 gaagaaagaa tatatcgttt taaaattcct caagatagcg caggaactta ctggtatcat
     1861 ccacaccctc attataccgc ttctaaacaa gtttttatgg gtttagcagg ggcttttgtg
     1921 atcaaagcaa aaaaagatgc tttaagtcat ttaaaagaaa gagatttgat gattagcgat
     1981 ttgcgtcttg atgaaaacgc tcaaattccg aacaacaacc taaatgattg gctaaatggt
     2041 agagaaggag aatttgtact cattaatgga caatttaaac ctcaaatcaa actcgccaca
     2101 aacgaacgca tacgcattta taatgctact gcggcaagat atttaaattt acgcatacaa
     2161 ggagctaagt ttatacttgt tggtactgat ggtggactta tagaaaaaac tatttataaa
     2221 gaagaacttt tcttaagtcc tgcttctcgt gtagaagttt taatcgacgc tccaaaagat
     2281 gggaatttta agctagaaag tgcttattat gatagggata aaatgatggt aaaagaagaa
     2341 cctaataccc tatttttagc taatattagt ctaaaaaaag aaaatgtaga acttccaaaa
     2401 aatttaaaaa ttttcaaacc ttcagaagaa cctaaggaat ttaaagaaat aatcatgagt
     2461 gaagatcata tgcaaatgca tggtatgatg ggaaaaagtg aaagcgaatt aaaaatcgct
     2521 cttgcgtcta tgtttttaat caatggcaaa agctatgatt taaaacgcat tgatttaagc
     2581 tccaagcttg gagtagttga agactggata gtgataaaca aatctcacat ggatcatcct
     2641 ttccacatac acggcacgca atttgaactc atctcatcaa aactcaatgg caaagttcaa
     2701 aaagccgaat ttagagcctt aagagatact ataaatgtgc gtcctaatga agagttaaga
     2761 cttagaatga aacaagattt taaagggctt agaatgtatc attgtcatat tttagaacat
     2821 gaagatttag gaatgatggg aaatttagaa gtaaaggaat aaaatggtaa aagtggaatt
     2881 tttaggcccc ataaataaag aaaatttaga acttgaggta aaaaatttaa aagaattaaa
     2941 agaaattttg caaaaagatg agagtttaaa agaatggcta gaactttgtg ccgtatcttt
     3001 aaacgatgaa atcatttttg atgaaaacac taagttaaaa gatggtgata aaatagcact
     3061 tttaccacca gtttgtgggg gttaaatgaa acattttaca ctctatcaag gttctttaga
     3121 tattcctaaa atttatagcc aatggtatga atttgccaag gataaaaact gcggtgcttt
     3181 gctgactttt tgtggtattg tgcgtgaaga aggaggcatt gaggcactta gttttgatat
     3241 ttatgaaccg cttttaaaaa aatggtttaa tgagtggcaa aaaagagtag attctgatgg
     3301 tattagcttg ctttttgctc actctatagg cgatgtggtg gttcatgaaa gctcttattt
     3361 tgcaggaatt ttaagcaaac aaagaaaatt aggacttaaa cttcttaatg aatttgtgga
     3421 agattttaaa gcaagtgcac ccatttggaa gtatgatgtg ataaacaaag aaagaattta
     3481 tgccaaagaa agatcaacca agctttgcgg tgcaggactt ttaaaaggat aaaaaatgct
     3541 aatgtcttat gaagaaagtt taaaaatttt acattctcat atcaaaactt atgaaaagat
     3601 tgaaaaaata gctcttacag agtgtttagg acgcatttta gctcaagata taaaagcccc
     3661 taaaaatcag cctgaatttc caacctcggc tatggatggt tatgcgatca aatttgaaga
     3721 tcaagacaag cctttaaaaa ttttaggcct cacacctgcg ggtactatgc cacaatttag
     3781 cgtacaaaat ggcacttgtg taaaaacctt tacaggctca ctcatgagcg aaggaagcga
     3841 tactttagtc cctgttgaaa atatacgcat agaaaatgat actcttttta tagaaaaaaa
     3901 agttccccaa gcttttgccg tgcgtgcggt aggagaaaac tataaaaaag atgaaatttt
     3961 actcaaaaaa ggcacaaggt taaattatag cgagatagct cttttggctg aacttggatt
     4021 ttttcacatt agtgtattta taaagcctat tgtaggggtt ttaagtagtg gaagtgagat
     4081 caaagatcta ggagaagcct tggaaaatcc tgctcaaatc cgctcttcaa atcatatcgc
     4141 catagctaat ttagctaaaa atttaaattg cgatacaagg gtttttcctc ttttaaaaga
     4201 tgatgaaaaa gccacttttt ctacacttga aagtgctttg caaagttgtg atattttgat
     4261 tacaacgggc ggggtttcta tgggagattt tgacttttta aaaaaagccg tcaaagaata
     4321 tgaaatcatc atcgataaag ccgacataaa accaggcaga catatcaaaa tagctaaggc
     4381 taatgaaaaa ttcatcatcg ccttaccagg ttttccttac tcggctatgg taatgtttaa
     4441 tctttacgca agagagattt taagctcttg gttacttcag cctaaagact atatttgcaa
     4501 agccttttta caaggaagct acaagaaaaa aacaccttat ttggaatttg tcgcttgtaa
     4561 tgtggaattt aaaaatggac gcattttagc caatcttgaa ggcaaaaaag aaggctctag
     4621 tgcgattata aacaatctta acaataaagc tgcccttatg gtggtgccaa aagaatgtga
     4681 aattttagaa aatgaaagtt tagtggatat tatctttatg ccttaaaatt atttaaataa
     4741 ttttatttcg attttaatca accctaaatt tcaataagtt tcaaattcgc aacctccttt
     4801 tagtggagta attagcccta gcggagtttc aatccactag ggtttat
//
LOCUS       DAQSLY010000113         4787 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.114, whole genome shotgun sequence.
ACCESSION   DAQSLY010000113 DAQSLY010000000
VERSION     DAQSLY010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.114"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..195
                     /locus_tag="R2H98_001518"
     CDS             <1..195
                     /locus_tag="R2H98_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEE9024377.1"
                     /translation="ILFRKGEVALEILPKLVEKNIKNLWLQLGISNETAKEECKKLDI
                     NFIQNRCIMLEYPYFKTKEK"
     gene            195..1406
                     /locus_tag="R2H98_001519"
     CDS             195..1406
                     /locus_tag="R2H98_001519"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEE9024378.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSAEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYVFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1403..2128)
                     /gene="truA"
                     /locus_tag="R2H98_001520"
     CDS             complement(1403..2128)
                     /gene="truA"
                     /locus_tag="R2H98_001520"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEE9024379.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2125..3150)
                     /locus_tag="R2H98_001521"
     CDS             complement(2125..3150)
                     /locus_tag="R2H98_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEE9024380.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3150..3926)
                     /locus_tag="R2H98_001522"
     CDS             complement(3150..3926)
                     /locus_tag="R2H98_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEE9024381.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(3923..4591)
                     /gene="uppS"
                     /locus_tag="R2H98_001523"
     CDS             complement(3923..4591)
                     /gene="uppS"
                     /locus_tag="R2H98_001523"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEE9024382.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRAIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(4595..>4787)
                     /locus_tag="R2H98_001524"
     CDS             complement(4595..>4787)
                     /locus_tag="R2H98_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024383.1"
                     /translation="LEIYLYFSVFGALKILIDSQGVSIFTPFAKVQKFLNEHLDFNVS
                     QENKIEPLFVFKRLFDFKG"
BASE COUNT         1869 a          802 c          634 g         1482 t
ORIGIN      
        1 atacttttta gaaaaggcga agtggcacta gaaattcttc ctaagcttgt tgaaaaaaat
       61 attaaaaacc tatggcttca acttggtatt agtaatgaaa cagccaaaga agaatgtaaa
      121 aaattagata taaattttat acaaaatcgt tgcattatgc tagaatatcc gtattttaaa
      181 acaaaggaaa aatagtgtta gagcttaata aaatttacaa agcaaaacaa caaatttcag
      241 ggtttgtaaa caaaactcct ttcatatact cttctttttt aagtgatatt tgtcaaagtg
      301 agatttatct taaaaatgaa aatttacaaa ttacaggtgc ttataaaatt cgtggagctt
      361 ataataaaat agccaatctt agcgctgaac aaaaacaaca cggagtcatt gcggcaagtg
      421 caggaaacca tgctcaaggc gtggccatta gtgcaaaaaa atttggcatt aaagcagtta
      481 ttgtaatgcc agaatccact ccgctcttaa aagtttctgc tacaaaagcc ttaggagcag
      541 aggtgatact caaaggggac aattttgatg aagcttatgt ctttgcaacc tcttatgcta
      601 aagaaaataa tcttagtttt atccatcctt ttgaagatga atttgtaatg gcaggacaag
      661 gaactttgat gcttgaaatg cttgatgaaa taagcgatct tgatatgatt atcgcacctg
      721 ttggaggtgg aggacttata agtggtatcg caagtgcagc taaacaaatc aatccaaaca
      781 ttaaaatcat cggagttgga gccaaaggag ctcctgcaat gtatgaaagt tttcatgcca
      841 aaaaaatcaa aaatgcaaaa agcgtacgca ctatagccga tggtattgct gtgcgtgatg
      901 caaatcctat aaattttaac attattttag aatgcgtaga tgattttatc caagttgatg
      961 atgaagaaat cgctaatgcg gtattgtttt tacttgaaaa acataaaatc atagttgaag
     1021 gcgcaggagc tgcgagtgta gccgccctgc ttcatcaaaa aataaataca caaaatcata
     1081 aaaaaattgg cgtagtttta agcggaggca atatcgatgc acaaatgcta aatatcatca
     1141 tagaaaaagg tttatttaaa tcttacagaa aaatgcaaat tcatgttact ttagtagata
     1201 aacctggggc attattacac cttacagaca gcttaaaaat agccaatgca aatatagtaa
     1261 aaatcgacta tgatagattt tctaccaagc ttgattatgg cgatgcgatg atttcaatta
     1321 ccctagaaac caaaggtaaa gaacaccaag aagaaataag aaaaatttta acccaaaagg
     1381 cttttaattt ctatgaaagt ttttaataac atatacggct taaataaagc ccatttggcg
     1441 gtgctaaaaa gtgattgtat tgctttttag cctcaatctg ttctttgagt tctttttcac
     1501 tcatttttcc ttctaaaact tttaaaacgc ttgctacgct taatctaatt tgccctctta
     1561 aaaaaccatt agctttaaaa tgaaaaatgc taaaatcttt ataagcataa gctctagcaa
     1621 taaaaatttc tcttaaagtc gttttattat cccctccact tttgcaaaaa aactttaaat
     1681 ccttttttcc tacaaaaaaa cccaaaagct cattagcttt acctaggtca aatttaggat
     1741 aaaaatgtac ataagaagcc ataaaaggac tataagaagc gtgagaaaat atatagcggt
     1801 attctctact ttttacatca aatcttactt caaaatcatc ttttactttt tcaatttttt
     1861 tgatatggat aaaaggatgg gaaaatttat taagttgttt ttgaagatat tctaaatttg
     1921 taaaataatc tccacactcc acactagcta cagcatagct tgcatgtact cctttatctg
     1981 tacgagaagc cattaaaaga ggtgaaaaaa tacccaaatg cgataaggcc ccacttaaag
     2041 catcttgaac acctttttta tgaggctgag tagcagaacc taaaaaagca gagccatcat
     2101 aagaaaatat aatttttatt ttcatcaata tcgactcaaa atcattttct taaaacaata
     2161 agccgaaaca aataaactta aagaaaaaat tccaagacaa gccaaaattg gaggttgaga
     2221 aaaagaactt aaaagtccaa aatatatagc aatcactcca aacataccta aatacacata
     2281 gcctttttca taacgataag taaccaaacc aaaacaaagc gcaaaaagcg tactagcaag
     2341 tggaaacaag gctatagttg tataaatcac aaattctctt gctctttgtg gattttcgtt
     2401 taaatcattc cagtattcat aaaatttctt tgtttgaaga ttgtctgtat taaactgagt
     2461 atttactact aaagtgtcaa attctccact aaaaatactt tgaccttgct caaaattata
     2521 cattttgcct tgatttaagc taaaagcaaa gctatcatct tttctttgca catgcgcttc
     2581 tttggctatg ataagttgtt ctttatcatc tgctttatgt ttagggcgat acataattat
     2641 gttttcatac ttatcactat cttgtttttc tataaaaatc atccagtcta aaaatttttg
     2701 tccaaattct cctgttttgt agttaaattt cacttgagtg cttttatagt ttacaaagtt
     2761 atcctgaagt tcaaatacta taggtatcat taccaaagcc acaacaagca taaaagcact
     2821 aatcaagctt gcaattttaa ggaaaaattt tgccaaaatc attggtgaaa atcccaaagt
     2881 aaaaagcact atgctttcat tttccttaga aagcctaaac aaagccaaag ttaaagaaat
     2941 aaaaaaagat ataggcaagg taaaaattaa aattctaggc aacataaacc cataaagctt
     3001 taaaagatcc aaaaaactaa tctctatact tgaagtaagt tttgcaagtt gaataaaaaa
     3061 caccatagat acaatagcaa aaagtacgaa aaatatagac aaattcgtac ttaaaaattg
     3121 atttaaaaca tatcttaaac taagcttcat tagaataatc ctaagttttt ataaaataaa
     3181 actgccacaa aagcgatatt taaaaagggt atcatagcaa gttcttgctc ttttattgct
     3241 ttaattctaa aaaaaataaa aaaaggcaaa gtcaaaatag aagctataaa taatactaaa
     3301 aatccatact caaaacctaa aattccacct atacaagaca taataataat atcagcatca
     3361 cccaaatttt ctaaaatttc atcttttttt tggaaattca ttagaaaaaa aaccaaactt
     3421 tttaataaaa aaacaaatcc tccaaaacta aaagcattta gtaaaaaacc tccactaaac
     3481 tctttaaaaa tcaaaaaatg taaaatttca ctctccctaa aggcgtaaaa aaaagcaaat
     3541 aaaaaagcac tccaaagtaa aatttgtggt acggctttga gtttaatatc aattaaagaa
     3601 agtaagaaaa gattaaataa aaatagagat aaaaataaaa aatcataaaa attttgactt
     3661 aaagaataaa ccaaaataag caaaattgcg cctaaaattt cattgattaa caaagaaata
     3721 ggcaaatgac atttacaagt ttgacatttt gcctttaaaa aaatataaga aaaaatagga
     3781 ataatttcat agtattttaa ttttgtatca caagaaaaac aaaaagagcg cgagataaaa
     3841 aagggctttt tttcaattat cctacttgcc aaacttgtgc aaaaagaacc caaacaagcc
     3901 cctagaatta ttatgaaaaa tatcattttc caaaagttct ttctctattt ctaaattctt
     3961 taataatcct tttaaattct ctcttggtaa gagatggaaa taaagtttca ctaaaataaa
     4021 tttcagcata tgaacactgc caaagtaaga aatttgaaag tcttttagcg tttccaacgc
     4081 gaagcatcaa atccacatct aaaggtaaat ctaaattttg cgttaaattt tcttcattta
     4141 gctcaagttt tttttcaatc gcacgcttag cagctcttat aatctcatct cttgcaccat
     4201 aacttatagc caaattaaca caaagtgcgt cacaatgctt tgttttttct tcaactaagg
     4261 taattttttc tcttacttta tcttccaagc gcgataaatc acctatagct cttaaacgca
     4321 cattattttt ttcaaatttt tctaaagctt catctaaaca acgatctaaa agttcaaaaa
     4381 taaaatcaat ttcatcttta ggacgcttcc aattttccgt actaaaagca aaaaggctta
     4441 aatttgaaat attttcttcc atgcaaactt ccatcaattt ttgcatagtt ttaactcctt
     4501 gggaatatcc aagttttgcc aaaaaaccct tagccctagc ccagcgccta ttgccatcca
     4561 taacaacagc aaggtgtttt aattcattca tttttcatcc tttaaaatca aaaagccttt
     4621 tgaaaacaaa caaaggttca atcttgtttt cttgcgatac attaaaatct aaatgttcgt
     4681 ttaaaaattt ttgcacctta gcaaaaggtg taaaaatact aacaccttgt gaatctatta
     4741 aaattttcaa agctccaaaa acactaaaat ataagtaaat ttctaaa
//
LOCUS       DAQSLY010000114         4709 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.115, whole genome shotgun sequence.
ACCESSION   DAQSLY010000114 DAQSLY010000000
VERSION     DAQSLY010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4709
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.115"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            77..711
                     /locus_tag="R2H98_001525"
                     /pseudo
     CDS             77..711
                     /locus_tag="R2H98_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            1081..2583
                     /locus_tag="R2H98_001526"
     CDS             1081..2583
                     /locus_tag="R2H98_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEE9024384.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSETILKNLEKIK"
     gene            2716..3858
                     /locus_tag="R2H98_001527"
     CDS             2716..3858
                     /locus_tag="R2H98_001527"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEE9024385.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
     gene            3869..>4709
                     /locus_tag="R2H98_001528"
     CDS             3869..>4709
                     /locus_tag="R2H98_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024386.1"
                     /translation="MNKYKFVKFQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFL
                     RALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDK
                     IVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQS
                     EPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVK
                     TMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQ
                     KKIM"
BASE COUNT         1780 a          619 c          846 g         1464 t
ORIGIN      
        1 ttgattttta gtagtaaata tatttataat ttctagattg cattttttat gtaaaaatac
       61 ttaaaaagga gatattatga aaatagcaat tttatgtgca agcggtaaag taggcaaaga
      121 aatcagcaaa gaagctttaa aaagaaattt agagccagta tgttttgtac gcaatagctc
      181 taaaatgaat gaatttttac ctcaagctaa aatagtacaa agagatcttt ttgaacttga
      241 ttctaaagat ctgatagatt ttgatattat tattgacgct tttggagaat gggaaaattt
      301 aagcttacat aaaaagcata tagaatgctt gagtgtaatt ttacaaggaa gtaaggctaa
      361 attatttgtt gtagggggtg ctggaagttt gtatatggat gagaatcata ctacaagact
      421 tatggatatg cctgattttc ctaaagagta tttggatata gctaagcaag tgcggaagta
      481 ttggaatttt tacgcaatga aaaaggtttt aaatgggtat atgtgagccc atctgctatt
      541 ttttcaccag atcttccaaa aagcaatcat tataaaatca taggcgaaaa atttgaagtg
      601 aatgccaaca atgaaagtaa aatcagctat agtgattatg ctagtgctat gatagacata
      661 gtgcttaatt cttgctatga aaacacacgc attggggtaa taagcctata aataaagatg
      721 ccttatgctt ttaaggcatc ttttatttct tttaaatact tattttgaag ttttaaattt
      781 tcttctaaag aatttaaaat ctcttcgcta gttcttagga ttttttcttc ttttacattt
      841 ggatttttag cacttaaatc ataatttctt tcttcaagtt cttttttgct aagcagccaa
      901 gaattagcag tgatttttct tttctttgta gcattttaga aattccttaa aatatgcgta
      961 ttctaaaggc ttgtttttag taagcttgta aggtggtata agctcgtagt aatacacctt
     1021 atcatcattt gcttttaaaa tactatttgt tatacttaat aaaattattt aaggataaaa
     1081 atggcaaaga aaaaagaaat aaaactagaa gatgcgttat ggaaaagtgc tgataaatta
     1141 cgcaaaaata tcgacgcagc agagtataaa cacatagttt taggacttat atttttacgc
     1201 tacattagcg atagctttat gcaaaaatac gaagagttat taaaagaaca agatgatgga
     1261 gccgacccag aagatgcaga tgaataccta gctgacaata tcttcttcgt tccagaaaaa
     1321 tctcgctaca actacataag agataacgcc aaaaatccca aaataggcaa aatgctagat
     1381 gaagcaatgg acgagataga aaaacacaac gatactctaa aaggagtttt gccaaaagtc
     1441 tatgccaaag ataacttaga tagtaaatgc ctaggcgaac ttatagatct tataggaaat
     1501 atcgcctttg acactggtaa aagcaccgat gttttaggtc atgtatttga gtatttttta
     1561 ggtgaatttg ccctagctga aggcaaacaa ggcggacaat tctacactcc aaaatgcgtc
     1621 gtagagctcc tagtaactat gcttgagcca tataaaggca gagtgtttga tccttgctgt
     1681 ggaagtggcg gtatgtttgt tcaaagcgaa gagtttgtaa aatctcacca aggcagacta
     1741 gatgacatct caatctatgg tcaagagtca aatcagacta cctacaaact cgccaaaatg
     1801 aacctagcca taagaaaaat cgaaagctca caagtgatat ggaacaacga aggctcattt
     1861 ttaaacgacg ctcataaaga cttaaaagcc gattttatta tagccaatcc accatttaac
     1921 gactcggact ggagcggcga actgttagaa aacgatggca gatggaaata cggcgtccca
     1981 ccagcaagca acgccaacta cgcttggata cagcactttt tatatcatct atcaccaaac
     2041 ggcggtgtag cgggatttgt cctagctaaa ggcgcactta caagcaacac cacaaatgaa
     2101 gcagccatta gaaaagcact tattgaagat gatttgatag attgtatagt aaatctaccc
     2161 gcaaagctgt ttttaaatac aggtattcct gcatcacttt ggtttataag acgccaaaag
     2221 ctaccaaaga cagtcaaaaa aacgcttttt atagatgcaa gagatttagg aactaggata
     2281 aatagacgca acaaaaccct aaacaaagac gatataaacc aaatcgcaaa tatttataaa
     2341 gcatggaaaa acggcactga ttatgaagac ataaaaggct tttgtaaaag tgttagcata
     2401 gatgagataa gagagctttc ttatgtgctt accccagggc gttatgtggg gcttgctgat
     2461 agtgatgatg agtttgattt tgatactaga tttaacgagc ttttagcaaa gttaaaatcc
     2521 caaatcaaaa ctgagcaaga gctgagcgaa actatcttaa aaaatttaga gaagataaaa
     2581 taatgttttg tgttgtgctt tcgtcattat cttttaaacc aagcttaaac aaaggaaatt
     2641 ccgaatttaa attctcgaat ttatttcgtg tattttttgg attttttacg caaataaatt
     2701 ccgagggatt aagatatgaa taattggaaa aaatgtaagc ttggggatat tgcagagata
     2761 acaatggggc aatctccaaa atcagaattt tataattttg ataatatagg tatgccattt
     2821 ttacaaggca ataggacttt tggtaggaaa tatccttatt ttgatacata ttgcactgaa
     2881 tataaaaaaa tagctaaaaa gggtgagatt ttatttagtg tgagagctcc tgtcggagat
     2941 attaatttcg caaacaatga tatttgtatc ggtaggggct tatgctccat gaatgcaaaa
     3001 aatggtgaaa atgaattttt atattactta ttacacaact taagaagtgt tattataaat
     3061 aatgagtctg gtagtgtttt tggctcggta aataaaaatg atttacaaac aatagaaatt
     3121 ttattaccgc tattagaaga gcaaaggcaa attgctacta tcttaagtag tattgatgac
     3181 aagatagaac tactacacga gcaaaacaaa accctagaag aactcgccca aactcttttt
     3241 ttaaattggt ttaaagatag agaatttaat agcactatta gtgattttat atctatgcaa
     3301 aatggttttg cttttaagag taaagatttt atagattatg gtaacaatgg agtaataaag
     3361 ataaaaaata tttcaaatgg aattgtagat attgtaaata ctgataagat aagccaaaat
     3421 actataaatg aagttaataa caaatttaat ataaattctg gagatatttt atttgcaatg
     3481 actggtgctg agataggtaa aatgggtatc gttccaagta caaataaaaa attatggtta
     3541 aatcagcgag taggaatggt aaaagaaagg tttttaggag ctaggttttt agcatatata
     3601 catttaactt ctgaatttgg ttatgactat gttatcaatt cagctactgg cagtgctcaa
     3661 gaaaatataa gtgcgacaga tattgaaaat tgtccatttg ttaagcttac gagtgaagag
     3721 attgtgagtt attctaaaca attaaatgat ttttttgaaa aaattatatt taatctagga
     3781 gaaattcaaa ccctagaaaa tatgcgtgat atacttatcc caaaactcct aaacggagaa
     3841 ataaaaataa ctaactaaag gagaatgtgt gaataaatat aagtttgtaa aatttcaggt
     3901 taaaaacttt cgttctttat tggatattac tttaaatata gacaataata atataaatac
     3961 aatttgcggt gaaaataata ttggaaagac taattttttg agagccttaa atttattttt
     4021 taatcataat aatggtgtgg agtataatca aaatgaagat agaccatatc atattcaaaa
     4081 gggatcaact ggtggtagaa aaacagaatt aataggctat tttacaaaaa ataatgtcac
     4141 acatatttta aaagttgaat ttcataaaga taagattgtg tatatattaa atggaaagat
     4201 ggttgaatgg aaagttgcta gagatattgt agaaagtttt aaacttttat ttatagaagc
     4261 aagtaatgtg aatatgccta gcgtaatttc tgctatttta gaaaacgatg ctttgttagc
     4321 cttagataat aaacgaaaaa agcaaagtga gcctttaaga acattgaaat tattcataga
     4381 acaatcaaag aaagctatag aagatataga aaaggatatt aatatatatt taaaacaaat
     4441 gttagatttt gataacacct taaaagacaa ggaaataaaa attagatttg ccgaatttga
     4501 aaaattaaga gatgttgtaa aaactatgac atctgttact ttagacgatg gaaatgacca
     4561 cttaatggat cataaaggga gtggtgctca aagaatagta cttttatctt taatgcaata
     4621 tattacagat aaaattacaa cagatataat atgggcaatt gatgaaccag aagcattttt
     4681 gcagccaaaa ttacaaaaaa agattatgg
//
LOCUS       DAQSLY010000115         4604 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.116, whole genome shotgun sequence.
ACCESSION   DAQSLY010000115 DAQSLY010000000
VERSION     DAQSLY010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.116"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            19..714
                     /gene="ung"
                     /locus_tag="R2H98_001529"
     CDS             19..714
                     /gene="ung"
                     /locus_tag="R2H98_001529"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEE9024387.1"
                     /translation="MEEITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQN
                     IVIYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNI
                     FKELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHK
                     LSNEKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFL
                     KKVGKIPIDWKIV"
     gene            830..1525
                     /locus_tag="R2H98_001530"
     CDS             830..1525
                     /locus_tag="R2H98_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEE9024388.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
     gene            complement(1719..2843)
                     /gene="cydB"
                     /locus_tag="R2H98_001531"
     CDS             complement(1719..2843)
                     /gene="cydB"
                     /locus_tag="R2H98_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEE9024389.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFINNINDENIKIRAMKKLMINSILFL
                     PFFLGFLVWIFLKDGFSVDANGVVSMSANLYLYNFLNQMIFAVLLAIGVILVLLGMFQ
                     GAKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(2843..4405)
                     /locus_tag="R2H98_001532"
     CDS             complement(2843..4405)
                     /locus_tag="R2H98_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEE9024390.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(4406..4603)
                     /locus_tag="R2H98_001533"
     CDS             complement(4406..4603)
                     /locus_tag="R2H98_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005871229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEE9024391.1"
                     /translation="MFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVILKLFVFDVNFNS
                     IFKSDKEKSTFVLKNLTLEGK"
BASE COUNT         1795 a          759 c          645 g         1405 t
ORIGIN      
        1 taaataatta gggataatat ggaagaaatt acaataaaca tagataagat taaaataaat
       61 gatgactgga aagaattttt aagagacgaa tttcaaaaaa aatattttct agaaatcaaa
      121 aaacaatacc taaatgcgat taatcaaaat atagttattt atccgcctgc aaatttaatc
      181 tttaatgctt ttaatttatg tcctttaaaa gaaattaaaa ttattatcct aggacaagat
      241 ccttatcatc aaccaaatca agcaatgggg cttagttttt cggttccaaa aaatgtaaaa
      301 atcccaccaa gtcttaataa tatttttaaa gaattgcaaa atgatttaaa catcactcca
      361 gcaaaaagcg gagatttaag ctcttgggca aaacaaggag ttttgctctt aaattctatt
      421 cttagcgttg aagcaaataa agcagctagc catagttcgt ggggttggca agaatttagt
      481 gatgctataa tacataaatt aagtaatgaa aaatcagggc ttgtttttat gctttgggga
      541 aattacgcaa aaaacaagga gattttgatt gataatacta agcatttgat tttaaaagca
      601 gctcacccaa gccctttagc tagaacagga tttttaggtt gtaagcattt ttcaaaggct
      661 aatgaatttt taaaaaaagt tggtaaaatt cctatagatt ggaaaatagt ttaaaaaatt
      721 attttaaact ttaataaaaa tattaaaata tatttattta aaaataaatc atatttctat
      781 gaaatatatt gtaataaaac gactcaaaaa ttaattctta aggagaaaaa tgaaaaccat
      841 tggtattata ggcggaatga gttttgaaag cactattact tattataaaa caataaatca
      901 agctataaat gataaattaa aatctttaaa ttctgcaaaa attttacttt acagtgttaa
      961 ttttgaagaa atagaaaatt tacaaagcca agataaatgg caagaagctg cacaaatttt
     1021 gactcaatgt gctaaaaaat tagaacttgc aggggctaat tttataataa ttgcaactaa
     1081 tactatgcat aaggtttttg atgaaattca acaaaatata aatatcccta ttttacatat
     1141 tgcaaaaagt tctgctaagg ctttaaaaca agaaaacata caaaaaattg gtttattggg
     1201 tactaaatac acaatgacgc aggattttta taaaaaaatg ctgattgaag aaaatattag
     1261 cgttattact cctagtgatg aagatataaa aatcgttaat gatatcattt ttaatgagct
     1321 ttgcaaaggt gaaatcaagc aagattctaa agaaaaatat ttaaatatta taaaaaaact
     1381 acaagaaaaa ggggcaaaag gagtgctttt agcttgcact gaaattggtt tattaatatc
     1441 taaaaatgat acaaatatca aaatttttga cacaagcctt attcacgccc ttgatgctgc
     1501 taatgaagct ttaaaagatt tatgattaaa agatgcccaa aaatgggcaa atcgcaatat
     1561 tttgaaaaga tttatactta tatcggttta aatcttatct tgctttatag tttgctatct
     1621 ttttctaatt gattgatatt tagcattata aatttatagc tcagataaat taccaaaggc
     1681 caagccaata aaaacaaagc atgtaacatt ttttctcctt aatatgcgtg atcatcgttt
     1741 gcgatttctt cgcgtgtgat ttttacttta tccattgcat tccaaacata gataatataa
     1801 gctaaaacaa aaggtacaag taaagacaca taagccatga cgcttagagt ataatagctt
     1861 gaacttgcat tttttaaagt taaagaactt tgcaaatcac ttaaagatgg gtaaaaagca
     1921 ctttgaccta aaccaatgct tgataataaa gcaaaaactg ttaaaaccgt tccaagtcct
     1981 agggtaaaaa tagctttaga gcaacctttt gctccttgaa acatacctaa aagcactaaa
     2041 atcacaccga tagcaagcaa aacagcaaaa atcatttgat ttaagaaatt atataaatat
     2101 aaattcgcac tcatgcttac aactccattt gcatctacac taaaaccatc ttttaagaaa
     2161 atccacacta aaaaacctaa gaaaaaaggt aaaaataaaa tactattgat cataagtttt
     2221 ttcatagctc ttattttgat attctcatca ttgatattgt ttataaaata cgctgcgcct
     2281 aaaagccttg ctaaaaatac taaagctaag cctaagagat aattaaaagg attaagtaaa
     2341 agttctaagc cgtgcaaagg attttgccaa gaaacaaaat tatgctcatt taagataaat
     2401 tcagaaccgc taaaaaagct acttactgca actccgatta aaaatacacc taaataacca
     2461 ttgattttaa gaaaaatttc ataggtttta gagccataaa cattattttc ttttttacga
     2521 tactcataag ccacagcttg taaaataaaa caaaataaaa tacaaagcca agcccaataa
     2581 gctccgccaa aacttgtact ataaaaaagt ggaaaagctg caaaagctgc tccgccaaaa
     2641 agtacgagag ttgtaaaacc aagctcccat ttacgcccta aagaattgac tagcatggtt
     2701 ttttcaagct catccttgct aagctcatcg attaaagtct gtccaccttg gacaaaaaac
     2761 ataaaaacca aaagtccgcc gagtaaactt aaaatcaacc accaataaat ttgcaaacct
     2821 tcaagttcta aaccaaaaaa cattattttt ctcctttgcc cataagtgga gtatgtcctg
     2881 catgtgcgtc aaaacctttt ttaatctgag taagcatgat tttaacttct gcaatcaata
     2941 aggctgtaaa aagtactgca aaaatccaaa atgaaatttg aacattgact tttccaagtt
     3001 gtgttgctgc gatatgtaca ggaagcaagt cttgaattgc ccaaggttgt ctgcctactt
     3061 cagcaacaat ccaacctgct tcagcggcaa tataacccaa tggaatggat aacaaacaca
     3121 cccaaagtac ttttctaaat ttctcaatat catttgccat ggtaagataa agcgtaacga
     3181 tgaaaagtaa aaagaaaaaa cttcctaaag caaccatgat atgaaagcta taaaaagtta
     3241 aagccacagg tggaatagta tcgcttggtt tttctaaata tccgtaacca aaatctttaa
     3301 aatgagtttc taaaatggat ttgtgatttg ccatagctat tgtatcattg ttttctttag
     3361 caagtttata gtcttttaga gcttgtatag cgatttttcc tctatcgata cgattttgca
     3421 taggttctat acctttgctt tcatttccat agatcaaatc ttcaattcct ggaacaaaag
     3481 aatttggatc acggtttcct aatatagaaa gagcgtaagg tatagtaatg tcaaataaaa
     3541 acacactttc gttattatct atggtttttt taggatttaa aattccaaaa ggtacaagtc
     3601 ctgcacgatg ttcaccttga taaacccctt ccatagctgc aagtttcata ggttgagttt
     3661 gagttacacg gtaagcgctt tcatctccgc tgaaaaacaa aaagattgaa caaaccaaac
     3721 caaaactagc tcctacaact aagctttttt tagcctcgat aatatggcgt ccttttaaca
     3781 taaaccaagc tgaaattccc attacaaata aagctgaaat cacataacca ctgcctatgg
     3841 tatgtaaaaa ttttgaaata gctacaggag aaagtgctac ttcaaaaaag ctttgcattt
     3901 catttcttgc tgtgtcaggg ttaaagctca ttcctacagg atattgcatc caaccatttg
     3961 ccactaaaat ccaaaaagca gaaagattac ttcctatagc cacacaccaa gttgaaagta
     4021 agtgaaaacc cttgcttact ttatcccagc caaaaaacat aactgcaaaa aaagtagcct
     4081 ctaaaaaaaa tgccataata ccttcaaccg ccaaaggtgc accaaaaata tcacccacaa
     4141 accagctata atttgcccag tttgttccaa attcaaattc cattataatg cctgtagcta
     4201 caccgatagc aaaatttata gcaaataatg aaagccaaaa tttggtgatt tttttccatc
     4261 tttcattttt agtttttaca tagatggttt ccatgatagc gatcataaaa gacaagccta
     4321 aggttaaagg cacaaacaaa aaatgataaa gtgcagttaa agcaaactgc gctcttgacc
     4381 aatcaacgct actaagttcg ttcatttatt ttccttcgag tgtaagattt ttgagtacaa
     4441 aagtgctttt ttctttgtcg cttttaaaaa tagaattaaa atttacatca aaaacaaaaa
     4501 gttttaaaat cacaaacata acaaaaagtt tgataaaaat aattttccaa agggtctttc
     4561 caagagttaa atttttaaaa ccttctttgt aaaaattaaa aatt
//
LOCUS       DAQSLY010000116         4485 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.117, whole genome shotgun sequence.
ACCESSION   DAQSLY010000116 DAQSLY010000000
VERSION     DAQSLY010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4485
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.117"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            10..1869
                     /locus_tag="R2H98_001534"
     CDS             10..1869
                     /locus_tag="R2H98_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEE9024392.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKNLMSFCNQHKN
                     IPLNKTIQITVAQGIDPIESQDESLILAYKEKTKNYTIDEKRSGIIVVDENEVVLKHA
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFVEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDSNYDE
                     EFAILGEQISKLNHKMNKIRQYILSSKNGILSVEKKITELKNQGQNVPIQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFYSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            1845..2396
                     /gene="ruvA"
                     /locus_tag="R2H98_001535"
     CDS             1845..2396
                     /gene="ruvA"
                     /locus_tag="R2H98_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEE9024393.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLASAQATGTSELIKEALKKLG"
     gene            2406..3446
                     /locus_tag="R2H98_001536"
     CDS             2406..3446
                     /locus_tag="R2H98_001536"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEE9024394.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFSTTLNALADQISLEKMIKISYN
                     FLHSINGQKGKL"
     gene            3506..3721
                     /locus_tag="R2H98_001537"
     CDS             3506..3721
                     /locus_tag="R2H98_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEE9024395.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            3723..4442
                     /locus_tag="R2H98_001538"
     CDS             3723..4442
                     /locus_tag="R2H98_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEE9024396.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLTLPQILILHGWGANKELMKQS
                     FYPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPMMYETFKNVVDEDFGEIFAKQKAKSLVFWGKSDEATPLYCGEKMHQLLKNSTFYPL
                     EGDHFFFLKYSAFIAQKIKEI"
BASE COUNT         1791 a          605 c          721 g         1368 t
ORIGIN      
        1 gggaaagttt tggctttgga tgaaaaaatt attgcctata cagaaaatcc agctcgagag
       61 cttttaagcg tagcttcacg aacaaacctt agcttaaatg agcttgattt tagtttattg
      121 gcgttttcta cacaatatcg ttttggagat ttagaatggg aaaaaatctc tgaaaaagaa
      181 ttaactcttt ttgataaaga tgaaattttt ttaaaaaatg atcttcaaat caagcaagaa
      241 tacaaaatag aaattttcca cggtataaac caaagcaaag catctcaagc agtcaaacta
      301 gttgcaaata aaaatttaac caaaatagtt gctcaaattg attttacaaa tttagacttt
      361 catgaaaaac tagcactaga acttttgcaa aatatttata aaaagatgtt gaaacttaaa
      421 tttttaatag gtatccgcat ttttgatttt aagaaaaatt taatgtcttt ttgcaaccaa
      481 cataaaaaca tccctttaaa taaaactata caaatcaccg ttgcacaagg tattgatcct
      541 atagaaagtc aagatgaatc cctgatcttg gcttataaag aaaaaaccaa aaactacact
      601 atcgatgaaa aacgctcagg tattattgtt gttgatgaaa acgaagttgt tttaaaacac
      661 gccaaattta aacaaggtaa agaaggaaaa gacttaaatt tgcacacctt aaaagtttta
      721 gccgcaaatg aaaataaagt taaattttct tgttcttcag cttttaaaca agtagagcaa
      781 gatggataca cagaatatat agccttaaaa aaaggttatg tagtacaaga tggtgaaaaa
      841 tttgatattg caaatgaact agattttaat ggggtagatt ttaaaaatat agggattata
      901 agagctggac tagacaaaaa tgtcaaaatc aatataaaat ttctttcaga agtaaaagat
      961 gctgtaaatt ctggcgttgg gatagaatgt gaagaattaa atgtagtcgg aagcgtagga
     1021 agcaacactc aacttaatgc caccaaaatg aaaattgaag gcactacaca ctctaaagcc
     1081 aaaattcaag ccaaacaagc ctatataaaa actcatagag gatttgtaga agccgaaatt
     1141 ttaaatatag atttgctcga aggtggaaca atcaaagcta aagaagtgag aattaaaaaa
     1201 agtttaggcg gaaatataca agctgataaa atctatatag aaaatttaga aagtaataat
     1261 tcttgtgtgt tttttgaaaa caccacaata gaacgcatca acggggataa caataaattt
     1321 catgctaaaa ttaaaactct tgatagtaat tatgatgaag aatttgcgat tttaggagag
     1381 caaatttcta agttaaatca taaaatgaat aaaataagac aatacatttt atcaagtaaa
     1441 aatggaattt taagcgttga aaaaaagata acagaactta aaaatcaagg tcaaaatgtt
     1501 cctatacaat acgaaaaagc cctaaaagat ttctctttac aaaatcttga attaaataaa
     1561 ctacaaaatg aagaaaaaga acttcttgaa cgcaaaaaat ctttacaatt agaattaatc
     1621 aatttgcaaa aaatgctttt tgaagcaact tttataaata aaagcggcaa atggactgac
     1681 atgaatgaga tcaaattttc acttctagaa cctaaagaag atatttttta ctcttcattt
     1741 gttaatgaaa gtgctaaatt tataggtatt aaaaaagtca tacaaaacaa ccaagaaagt
     1801 atagaaatac ataaaaaatt agattatgaa gaaaaggata tagcatggtt gtcggcatcg
     1861 aaggaataat cacaaaaaaa gaacctactt ttatcattgt taaatgtgct agtggtttaa
     1921 gctatgggat atttatttcg cttttttgtt ctgctaaaat tcaaactcaa gaaaagcatg
     1981 agttttttat tactcaaatc atcaaagaag attctaataa attttatggc ttcttggata
     2041 aagatgaaca aaaaatgttt gaaatgcttt taaaagtcaa tggagtgggt gcaaatactg
     2101 ctatggcggt atgctctagt cttgatgtaa attcttttta caaagcgtta agtttaggcg
     2161 atgaaagcgt gcttaaaaaa gtacctggta taggtccaaa aagtgcgaaa cgcattatag
     2221 tagaactttc agatacaaaa accaaacttg aaaatgtaag cgatgataaa agtgaagcct
     2281 tagccgcact tcttactcta ggctttaaac aagaaaaaat cataagtgtt ttagcaagtg
     2341 ctcaagcaac aggcacaagc gaactcatca aagaagctct taaaaaacta ggataaagga
     2401 ataaaatgaa atttgcaata ctttttggcg gaaattctta tgaacatgag atcagtatag
     2461 taagtgctgt agtacttaaa aaagttatta atcaaaattt agaatttatt ttttgtgatg
     2521 aagaaagaag attttatcat atcccaagtg aaaaaatgaa ttctaaaact tttagcacca
     2581 aagcttataa aaaagaaaaa gaacttttca tcaaacaagg aggttttttt agcaaaggct
     2641 ttttaaaaga aaataaacta gagtgcgagt gcgtgatcaa tcttatccat ggtagagatg
     2701 gagaagatgg aaaaattgca gctttatttg agttttattc tattaaattt ataggaccta
     2761 ggcttgaagc cagcgtatta tctttcaaca aagaacttac caaactttat gccaaaagcg
     2821 ttggagtaaa aacacttgat tataccatgg taagaaaagg gcaaaactct aaagaaaagc
     2881 ttagttttcc ttgcattatc aaacctgcaa gacttggaag tagcataggt attagtatag
     2941 taaaagatga aaaagattta gaatacgcca aagatgtagg ttttgaattt gataatgatc
     3001 ttgtagtgga agaatttaaa aacaatatca aagaatacaa tcttgcagga tgtatgatca
     3061 atgatgagtt tgttttttcc atcatagaag agccaaagaa aaaagaattt ttagactttg
     3121 aacaaaaata tcttagcttt tcaggacaca atgagcttat agaagcaaat ttaagcgaag
     3181 aattaaaaga aaaactcaaa gatagtttta aaaagatcta caatcctttg tttaaaggtg
     3241 ctttaatacg ctgcgatttt tttatactgg ataatgaaat atatttaaat gaaatcaacc
     3301 caaatcctgg ttctttggct aattatcttt ttaaagattt tagtactact ttaaacgctt
     3361 tagctgatca aatttcactt gaaaaaatga taaaaatcag ctacaacttc cttcactcta
     3421 tcaacggaca aaaaggaaaa ttataagctt ttaagtcaaa atacgctaaa ttatacataa
     3481 aatttagcgt attttaggaa gaaaaatgct ctcttttaaa caagatgaaa tttacactgc
     3541 caccgaagtg gtaagaaatt ttagccccat tatggaaaaa ctcaaaaaaa gcgaaagtgg
     3601 aaaaatagtt attttaaaaa ataacaaatt tgaagctgta atgcttagca tgaaggaatt
     3661 tgaacgctta caaaacgcca tgcaactttt agaaaatatc tacaaaaatc aaaaggctta
     3721 aaatggctca aactcaactt tcttataaaa acaaaactta tcaaatttct tatgaaattt
     3781 taggtgatct taccttaccg caaatactta tcttacacgg ctggggagcc aataaagaac
     3841 ttatgaagca aagtttttat ccttttttga aagacttttg tcaaatttat atggatttgg
     3901 cgggttttgg aaattcaagt gtggaagaaa ttttaaacac tcaagattat gccaatatca
     3961 cagaactttt tttaaaacaa aaaaaactca atgtctgttt tttcatgggg cattcttttg
     4021 gtggaaaagt aagcacccta ctcgcaaaag aaaaagacac cctaatctta ctttcaagtg
     4081 caggaatttt agctaaaaaa tccctaaaag tgcgttttaa aatccgtatt tttaaaattt
     4141 taaaactctt tggtttggga aaattttatc gctattttgc tagtaaagat ggagcaaatc
     4201 ttagccctat gatgtatgaa acctttaaaa atgttgttga tgaggatttt ggtgaaattt
     4261 ttgccaagca aaaggctaaa agcttggttt tttggggaaa aagcgatgaa gccacgcctt
     4321 tgtattgtgg tgaaaaaatg catcaacttt taaaaaatag cactttttat cctttagagg
     4381 gggatcattt tttcttttta aaatattctg ctttcatagc tcaaaaaatt aaggaaattt
     4441 aaatgcttat caatactctt tattttatca attctttatt tttta
//
LOCUS       DAQSLY010000117         4478 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.118, whole genome shotgun sequence.
ACCESSION   DAQSLY010000117 DAQSLY010000000
VERSION     DAQSLY010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.118"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            80..3034
                     /gene="cas9"
                     /locus_tag="R2H98_001539"
     CDS             80..3034
                     /gene="cas9"
                     /locus_tag="R2H98_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEE9024397.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            3031..3921
                     /gene="cas1"
                     /locus_tag="R2H98_001540"
     CDS             3031..3921
                     /gene="cas1"
                     /locus_tag="R2H98_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEE9024398.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3914..4345
                     /gene="cas2"
                     /locus_tag="R2H98_001541"
     CDS             3914..4345
                     /gene="cas2"
                     /locus_tag="R2H98_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEE9024399.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
BASE COUNT         1802 a          530 c          766 g         1380 t
ORIGIN      
        1 gaaaagttta tgtttgttta aaaaaatgat ttttgtatta taattataca caaatcataa
       61 atattaaaaa ggatctagtg tggcaagaat tttggcattt gatataggaa taagctctat
      121 tggctgggca tttagtgaaa atgatgagtt aaaagattgt ggagttagga tttttacaaa
      181 ggctgaaaat cccaaaacag gagaatcctt agccttgcca agacgccttg caagaagtgc
      241 tagaaaacgc cttgctagac gcaaagcaag gctaaatcac ttaaaacatt taatcgcaaa
      301 tgaatttaag ttaaattacg aagattatca aagctttgat gaaagtttag ccaaggctta
      361 taaaggatct ttaattagcc cttatgagtt aagatttaga gctttaaacg agcttttaag
      421 taagcaagat tttgcaagag tgattttaca tattgcaaaa aggcgtggct atgatgatat
      481 taaaaatagt gatgataaag aaaaaggtgc gattttaaaa gctatcaagc aaaatgaaga
      541 aaaactagca aattatcaaa gtgtgggcga gtatctttat aaagagtatt ttcaaaaatt
      601 caaagaaaat tccaaagaat ttacaaatgt tagaaataaa aaagaaagtt atgaacgctg
      661 catagcgcaa agttttttaa aagatgaatt aaagcttatt tttaaaaaac aaagagaatt
      721 tggcttttct ttttcaaaaa aatttgaaga agaggtgctt agtgtagcat tttataaaag
      781 ggctttaaaa gatttttctc atttggtggg aaattgtagt ttttttaccg atgaaaaaag
      841 agcgccaaaa aattctccct tagcttttat gtttgtagca cttacaagaa ttatcaatct
      901 tttaaacaat cttaaaaata ctgaaggaat tttatataca aaagatgatt taaacacgct
      961 tttgaatgaa gttttaaaaa acggcactct aacttataaa caaacaaaaa agcttttggg
     1021 cttaagcgat gattatgaat ttaaagggga aaaaggaact tattttattg agtttaaaaa
     1081 atataaagaa tttataaaag ccctaggtga tcatagttta agccaagatg atttaaatga
     1141 aatagcaaaa gatattaccc ttataaaaga tgagattaag cttaaaaagg ctttagcaaa
     1201 atatgattta aatcaaaatc aaattgatag tttaagcaaa ttggaattta aagaccattt
     1261 aaatataagt tttaaagcct taaaacttat cactccttta atgcttgaag gtaaaaaata
     1321 cgatgaagct tgtaatgagc ttaatttaaa agtagcaatc aatgaagata aaaaagattt
     1381 tttacccgca tttaatgaaa cttattataa agatgaggta actaatcctg tggttttaag
     1441 agcgattaaa gaatacagaa aggtcttaaa tgctttactt aaaaaatacg gcaaagtgca
     1501 taaaataaac attgaattag caagagaagt aggtaaaaat tacagccaaa gagctaaaat
     1561 agaaaaagag caaaatgaaa actacaaggc caaaaaagac gccgaacttg aatgtgaaaa
     1621 actaggctta aaaataaata gcaaaaatat tttaaaatta agattattta aagaacaaaa
     1681 agaattttgt gcttatagtg gagaaaagat taaaattagt gatttgcaag atgaaaaaat
     1741 gcttgaaatt gatcacattt acccttattc tagaagtttt gatgattctt atatgaataa
     1801 agttttagtt tttaccaagc aaaatcaaga aaaacttaat caaaccccct ttgaagcctt
     1861 tggcaatgat agtgcaaaat ggcagaaaat tgaagtttta gcaaaaaatt tacctactaa
     1921 aaagcaaaaa agaattttag ataaaaatta caaagacaaa gagcaaaaag actttaaaga
     1981 tagaaatcta aacgatactc gctacatcgc aaggcttgtt ttaaactaca ctaaagatta
     2041 tttagatttt ttacctttaa gcgatgatga aaatacaaag ttaaacgaca cacaaaaagg
     2101 ctcaaaagtg catgtagaag caaaaagcgg tatgcttaca tcggctttaa gacacacttg
     2161 gggctttagc gctaaggata gaaataacca tcttcatcac gccatcgatg cagtaattat
     2221 tgcttatgca aacaactcta tcgtaaaggc tttttcagat tttaaaaaag agcaagaaag
     2281 caacagtgca gaactttatg caaaaaaaat tagtgaatta gattataaaa acaaaaggaa
     2341 gttttttgag ccttttagtg gttttaggca aaaggtttta gataaaattg atgaaatttt
     2401 tgtctcaaaa cctgagagaa aaaagccaag tggagcttta catgaagaaa catttagaaa
     2461 agaagaagaa ttctatcaat catacggcgg aaaagaagga gttttaaaag ccctagagct
     2521 tggtaaaatc cgcaaagtaa atggtaaaat agttaaaaat ggcgatatgt ttagagtgga
     2581 tatttttaaa cacaaaaaga caaataaatt ttatgctgtg ccaatttata ctatggattt
     2641 tgctttaaaa gtattaccaa ataaagctgt agcacgaagt aaaaaaggtg agataaaaga
     2701 ctggatttta atggatgaaa attatgagtt ttgtttttct ttatacaaag atagtttgat
     2761 tttaattcaa actaaagata tgcaagagcc agaatttgtt tattataatg cttttacaag
     2821 ctctactgtt agtttgattg tttcaaaaca cgataataaa tttgaaacgc taagcaaaaa
     2881 tcaaaaaata ttgtttaaaa atgcaaatga aaaagaagta atcgcaaaaa gcataggaat
     2941 tcaaaatcta aaagtatttg aaaaatacat agtttcagca cttggggaag ttacaaaggc
     3001 tgagtttaga caaagagaag attttaaaaa atgagttacg atgaagcttt taaaacactg
     3061 cttattagct ctaatgccaa gctaaattta gagctaaatc atcttgtgat taagcaagat
     3121 gaaaatatag ccaaattgtt tttaaaagat ataaatatca tcgttttaga aagcttacaa
     3181 gtaagcatta gttccgcact ttttaacgct tttgcaaggc ataaaatcat cttgctaacc
     3241 tgcgatgaaa ctcatagtat aaatggtgtt tttactcctt ttttagggca ttttcaaagt
     3301 gcaaaaatcg caaaagagca aatgaatgta agtgctcaaa aaaaggctat tttatggcaa
     3361 aaaatcatta aaaataaaat cctaaatcaa gcctttatct taaaaaaata caataaaata
     3421 gagcaaagca atgagcttat aaatttggct aaaaaagtaa gcttaaatga tagtaaaaat
     3481 attgaagctg ttgcggcggc gctttatttt aaaactttgt ttggtacttc tttttcaaga
     3541 gatgagcttt gctttgaaaa ttctgcttta aattatggct atgcaatcat tagggcttgt
     3601 attattagag cagtttgcat aagtgggctt ttgccttggc ttggcataaa gcacgataat
     3661 atttataatt cttttgcgct ttgtgatgat ttgatagaag tgtttagggc tagtgttgat
     3721 gattgtgttt taaagcttaa gggtgaaagt gagtttttaa gcaaagatga caaaagagcg
     3781 ttgattggca atttacaaag caaaatcaat tttgatgggc aaaattatcc tttaaacaga
     3841 gcgataaatc attatgtggc aaattttaaa aatgctttat tgtatgaaga tgaactaaag
     3901 atagtgaaat ttgatgattg aagataaatt tatgcgtgtg cttttgatgt ttgatgtacc
     3961 tactaaaagt aaaaaagagc aaaaactagc aagtaaattt agaaataatc ttataaaatt
     4021 aggttatttt atgctgcaat ttagtgttta tatgcgtatt tgcaagggtt taagttctgc
     4081 aaaaagttct attgaaaatg taaaaaagat tttgccacct tatggaaatg taagggcttt
     4141 aatcatcact gaaaagcaat ttgataaaat ggagcttttg cttggtggca tagtttttaa
     4201 cgaaaaagtt aataacgaaa ccaatttaac gctttttgat atagatagtc atggagaatt
     4261 taaatataaa aattcaaata atgaagaaat tcaaataaac aaaaaacaag aaaaatatca
     4321 tcagcaaaat ttatttgaat tttaaaagcg gttttagggg attgtaaccc cgcagagtcc
     4381 cgcaaactct ttattttagt ccctttttaa atttcttatg agattatagc ataatttttg
     4441 ctatttttca tgaaaaaacc ccgaaatttt cattatct
//
LOCUS       DAQSLY010000118         4433 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.119, whole genome shotgun sequence.
ACCESSION   DAQSLY010000118 DAQSLY010000000
VERSION     DAQSLY010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4433
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.119"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(117..1277)
                     /locus_tag="R2H98_001542"
     CDS             complement(117..1277)
                     /locus_tag="R2H98_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEE9024400.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            1399..2124
                     /locus_tag="R2H98_001543"
     CDS             1399..2124
                     /locus_tag="R2H98_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEE9024401.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPISVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            2127..3509
                     /locus_tag="R2H98_001544"
     CDS             2127..3509
                     /locus_tag="R2H98_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEE9024402.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            3513..4319
                     /locus_tag="R2H98_001545"
     CDS             3513..4319
                     /locus_tag="R2H98_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEE9024403.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(4263..>4433)
                     /locus_tag="R2H98_001546"
     CDS             complement(4263..>4433)
                     /locus_tag="R2H98_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEE9024404.1"
                     /translation="FILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCI
                     FANFIPFIMIVI"
BASE COUNT         1452 a          587 c          777 g         1617 t
ORIGIN      
        1 ttggtgaaac aattaattga tgcagatttt tgtgaaatta gtgaaaaaga aaaagaagag
       61 cttgcaactc ttctaaattc tttaatcaat gcaaaagata aagcgttgtt gagtaattaa
      121 aattctatat agttttcaaa atcttcttct tttgggggat taggttgatt cgaggctagg
      181 gcttctttaa caacctgctc gtatccagct atgatatgtt taaaattctc ttttgctttt
      241 ccactaagtt ctgatttggc gatttttaca acagatgcag gatttatagc tttattattt
      301 aaatatactc caaaatgcaa atgaggccct gtgctcatac ctgttgaacc aacatatgca
      361 attacttgtc cttgatttac cttttgtccg tttttaattt ttgcaaaacg actaagatga
      421 gcatataaag tcatataacc tgagtcatgc ttgatttgaa ttacatttcc ataaccacct
      481 tttgtgccta taaaggttac tactcctttg ccagcacttt tcacaggagt tccagtaggt
      541 gcagcatagt ctataccaag atgggcacga tagcgtttta atataggatg atatcttgct
      601 gttgtaaaag gagaagaaat tctagtgtaa ttcacaggtt ttgtaagtaa aaaagattct
      661 aattctttgc catcacgatc atagaatata tcattataag aaaagacttc tctagcgctt
      721 ttattgattt ctaccattgc catttttata tttatatcac cccaaagttt acccatgcgt
      781 cttttttgtt cataatatag ggttacttca tcaccttttt ggatattgcg aaaatttata
      841 cttcctcgaa aagcacgaac catagcacga gctaaagtac tgctaccact ttcttcatag
      901 acatcttgat aagcagagct tttaatggtt aaatgtaaaa ttctatcttc tttttgataa
      961 gatacaggag taaaagcaag agtgtattgt ccatctttat ctttatagat atgaatttgt
     1021 aaatcatcgc taattggaat taaaacttgt tctatgttgt tgttttcatc ttttaaaact
     1081 tgatatttta ttttataggc tatatcagaa gcaagttctt gatcttctct atcaagtcca
     1141 taataaagcg acataggtat ggaatttctt tgtaagaatt taagcaaggt atctccatta
     1201 tcccaagtta gctcttcaac acttaaagct gcaaaacttt gaacaacaaa aataaataaa
     1261 agcaataatt ttttcatgag ataaccttaa tttttaaaag aattttgaaa tttgaaagct
     1321 atattttact ttatttttct tacaattgct taacaaaaaa ggattataat tctataaatt
     1381 tttatttaag gagcaaattt gtttaaaact atagtgtgtt ttttagcttt aaaccttagc
     1441 ctctttgcgg ttggatttga tttaaaacct ataaaaagtg aacttgtaaa agttgatgat
     1501 atttatggtt atattaaaga tagtgatgat ataaaacttt attcaagtgg cgtagtagtg
     1561 caacatttta gcaattcgca aagtatcatc gctagagcaa gtgttataga taaaaaaaat
     1621 ggtttggcaa aattagaatt tagtgttttt tcagctctta agcaagatgc tttgccttta
     1681 ccaaatgttt tacctaaagt aggtgatgag gttgttttaa attttcttta tgatagagga
     1741 ttggtaattg ctcctgatga acaaacttat aatgaacttg ttagagaatt tccgcagata
     1801 tattttaccc atattgatat ttttggagca caattaatta gaacggctac tctttctcct
     1861 aagcgttcag atcttaggca attttgtgat gataatgcgg ttggtatttt ggttgtagct
     1921 ttggaaaatc aagcagaagt tgtggattgt caagatttta ataagcttta tgaagtgcct
     1981 ataagcaaac caattagcgt tcaggttcct ttttattctc gtataggtgg atataaaagt
     2041 aatttttttg attttaactc tcaagaaata ggaaattatt atagatatta tgatgctttg
     2101 attaatcttc ctaaggtgca ataaacatga aaaaagaatt tgaacaatat tttaaacgat
     2161 ttttaggaga agaaaacgct tattttgatg aaattcacaa aagagcttat agctatgatg
     2221 cgacaaaaaa acattattta cccgatgggg ttctttttcc aagaaatgaa gaagatattg
     2281 ctcaaatttt aaaattttgc aatgaaaata atatcatagt catacctcga ggctcaggat
     2341 ctggttttac aggaggagct ttagctgtta atggcggggt ggtgcttgct tttgaaaagc
     2401 atatgaataa aattttagaa attgatcttg aaaatttagt ggctgttgtg caacctgggg
     2461 ttattaatat acatttacaa aaagaagtgg ctaaatatgg acttttttac ccacctgacc
     2521 ctgctagcat ggagtattca agcttagggg gtaatgtaag cgaaaatgct gggggaatga
     2581 gagctgcaaa atatggcatt acaaaagatt atgtgatggc tttaagggct gttttgccta
     2641 gcggagaaat cattcgtgca gggaaacgca ctattaaaga tgtagcaggt tataatttgg
     2701 caggaatttt aatcgctagt gaaggttctt tggcagtttt aagtgagctt actttaaaat
     2761 taataccttt gcctaaattt aaaaaaactg cttttgctat ttttccaagt gtaaaaagtg
     2821 ctatgaatgc ggtttacaaa agtcttgcta gcggtgtaag tcctgtatct atggaatttt
     2881 tagacaatct tagcattaga gcggttgaga gcaaatttaa taaaggtttg cctatagaag
     2941 ctggagctat tttgattgct gatgtggatg gtaatgttaa agaggctatt gatgaggatt
     3001 taagaaattt agaatattat tttttagaag ctggcgctag cgaatttaaa atagcaaaag
     3061 atgaacaaga aaccgcagat atttggtttg ctagaagaaa ttgttctcaa agcattgcca
     3121 tgtatggaac tttaaaactt aatgaagata ttacagttcc gcgttctaaa ctacctactt
     3181 tgcttgaagg tatagatgag atttctaaaa aatatggttt taaaattcct tgttttggac
     3241 atacagggga tggaaatgtg catactaatg ttatggttcc tgataaaaat gataaagagc
     3301 aggtgaaaaa aggctatgaa gctgtggaag agatttttaa attaacagtg aaacttggag
     3361 gaactttaag cggagagcat ggtatcggac tctctaaggc accttttatg aatttagctt
     3421 tttctgaagc cgaaatgaat ttaatgagaa atattaaaaa agcttttgat ccaaataata
     3481 tactaaatcc ttttaaaatg ggactttaga aggtgaaaaa tttttttact attttactaa
     3541 atttgcgtga taaggaaatt ttaaattatg cagcagcgct tagtttttat actgtattat
     3601 ctttaatacc tattttattt gtatgttttt ctgtttttac gcaaatttcc agttttaaag
     3661 cttattatga aaaagcaaag caagtaattt ttgctttttt aataccaacg caacaagatg
     3721 ttgttgctac ctacatcgat acttttttaa aaaatagtgt aaatttgggt attgtaggtc
     3781 ttattgctat ggcatttact tctttagctt ttttttcagg ctatgatttt gtaatcaatc
     3841 gcattactaa aaatgaacct aaaggacttt ggcaaagtat tagttcttat tggactcttt
     3901 taactcttgt tcctttgggg cttgggctta gtttttatat ttcaggtttt atccaacaaa
     3961 ctttagatga ttataaaata gggtttaatt tttttgaaat tttacccttt gtaattattt
     4021 ggggtttatt ttttatatct tattcaagtt ctgttcataa gggaactctt aaaagtttag
     4081 ctttagtatc ttttggagcg ggtactattt ggtatatagg aaaaaattta tttgtatatt
     4141 acgtggtata taataaaaca tacgctagcg tttatggatc tttttctact attttattct
     4201 tttttatttg gatttatatt tcttggatta tttatctttt tgggcttaaa ctctattatt
     4261 ttctaaatca caatcataat gaagggaata aaattcgcaa aaatacaaag aaaagctaga
     4321 tatttaaatc gcacagagat taaagaagca ataagataac ttataaaaat ccaaaatggg
     4381 atatggatat tagttccata aattttaaat ttaaaaaatt catctaagat aaa
//
LOCUS       DAQSLY010000119         4375 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.120, whole genome shotgun sequence.
ACCESSION   DAQSLY010000119 DAQSLY010000000
VERSION     DAQSLY010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.120"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1099
                     /locus_tag="R2H98_001547"
     CDS             <1..1099
                     /locus_tag="R2H98_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEE9024405.1"
                     /translation="QIYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIYI
                     PPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLE
                     KTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQ
                     YYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEAL
                     EEGGTPGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNLK
                     TRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPG
                     WLRISLHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(1096..1920)
                     /gene="purU"
                     /locus_tag="R2H98_001548"
     CDS             complement(1096..1920)
                     /gene="purU"
                     /locus_tag="R2H98_001548"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEE9024406.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(1917..3035)
                     /locus_tag="R2H98_001549"
     CDS             complement(1917..3035)
                     /locus_tag="R2H98_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEE9024407.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESTFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     QKEYLKYANQAFYLDDISDFELAKIAFEMPLKKWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3004..3495)
                     /locus_tag="R2H98_001550"
     CDS             complement(3004..3495)
                     /locus_tag="R2H98_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEE9024408.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(3492..3740)
                     /locus_tag="R2H98_001551"
     CDS             complement(3492..3740)
                     /locus_tag="R2H98_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEE9024409.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(3819..3992)
                     /gene="tatA2"
                     /locus_tag="R2H98_001552"
     CDS             complement(3819..3992)
                     /gene="tatA2"
                     /locus_tag="R2H98_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEE9024410.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKAQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(4002..4340)
                     /locus_tag="R2H98_001553"
     CDS             complement(4002..4340)
                     /locus_tag="R2H98_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEE9024411.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
BASE COUNT         1488 a          750 c          519 g         1618 t
ORIGIN      
        1 acaaatttac gaacaagcaa gaaaagatat aaaaaaaagt ttatcattag atgaaaattt
       61 tgcccttata gcctgcggaa caggatcaag cagtgctatt aaaaaatttc aagaattgat
      121 cggcatttac attccccctc ttgtaaaaga aagatatttt acgcaaattg ataaaaatac
      181 cttaccttta gttatcgtag ggccttatga gcatcattct aatgaacttt catttcgaga
      241 aggcttgtgc gaatgtatta gaattccctt ggataaaaat ggggaaattg attttgattt
      301 tctagaaaaa actttacaaa aaaacaaaaa aagaaaaata atcgctagct tttctttagc
      361 ttcaaatgtt actgggatat taagtgatta caaacgcatt tctgaaatgg ttcgtaaatt
      421 taaagggata gttgcttttg atgcatctag tttcattccc tataaaaaca tatcttgtca
      481 atactatgat gcgttgttta taagttctca taaattaatc ggtggtattg gcggttctgg
      541 acttttagct atcaaaaaag atctttgtgg aaacaagcct agctttgcag caggtggaac
      601 tgtgggctat gtttctcgca cttcacaatg ctacctttgc aatgaagaag ctttagaaga
      661 aggaggaaca cctggaattt tacaactcat tcgcgctagc ttagctttta aaatcaaaga
      721 ttctataggg attaaaaata tagaaaaaaa agaagaaatt ctaaaagatt atttttttga
      781 aaaactaaaa actataccta atttaatttt atacgcaaag aatttaaaaa cccgattgcc
      841 tatttttgct ttcaatatca aaggaatttc tccttttgat atcgcttacg aacttagtaa
      901 aaaataccac atagaaacac gcgctggatg tgcttgtgct gggccttatg gtcatgattt
      961 gctaggctta aaagataatc aaaaacttaa aacaaaacca ggttggttaa gaataagctt
     1021 gcattatacg catgaaaaag aggatattga ttattttttt aatgctttaa ataaaactat
     1081 aataaaatta tcacattaaa atattatagt tttattatta tatataaaaa ttctatcttc
     1141 aaaagccaaa tcaagtgctt ttgaaagaac atctttttct atatttctac ctgcttgctg
     1201 catatcttgc caagtaaatt catggtttac aggcgaaaca gcttgagtga taataggacc
     1261 ttcatcaaga ttattattta caaaatgtgc cgtagctcca attattttaa cccctctttc
     1321 aaaggcttgt ttataaggat ttgctcctat aaatgcaggt aaaaaagaat ggtgaatatt
     1381 tataatcttg ccttcaaaat gcctaacaaa atcaggagat aaaattcgca tatattttgc
     1441 taaaaccaaa taatcaaatt tatattgttc aagacatttt aaaatctgat tttcttgctc
     1501 tttacgatct aaattttcag cgctgataaa atgataagga atttcaaatt tctcaactaa
     1561 atcctttaaa gagttgtgat ttgaaatcac agctttgata tttgcttcaa gttcgttact
     1621 ataatgcttt attagcaaat ctcccaaaca atgactttct ttagtagcaa aaacaacgat
     1681 atcttttttt ctcttctcgc aaagctctat caaggcttct tgtccaagca tagcctcaag
     1741 cgttcctata aaagcttctt tatcaaactc accttctaaa agagcacgaa aaaaaaacat
     1801 tccttcgcct acaaattcat cgttttttac tatattgata tgatatttaa aaataacatc
     1861 agaaattcta tagattaaac ctttttgatc tttggtgcaa atttttaata cagaaatcat
     1921 ttagctaaac cttttatata ttcttttaat tcattctctc ttgcttcttg aagctttaag
     1981 ccaagaattt taccacaaaa tccagcattt atgaaatctt ttgctaaaat tttactttca
     2041 aacttattct cataaagccc taatctttta gcttgctcaa tacgcttttt actccaaagt
     2101 ccaagccatt tcttcaaagg catttcaaaa gcaatttttg ctagctcaaa atcacttata
     2161 tcatcaagat aaaaagcttg atttgcgtat tttaggtatt ctttttgaag tttggttctt
     2221 ttaaaaaata tatctttttc taaattaaaa aaattcaaat acaaatacaa gaataaagca
     2281 tcgcttttta caaattctct actttgtctg agcaaatttt gaaattccaa actcttaaaa
     2341 gtactctcaa agccgaaaat ctgtttttct aagtcaagtt cttgcaaata tctatagcca
     2401 acatcaagtc tagggctttt aaagaattta taaagctccg cattgatcct atctttgcta
     2461 agatcagtta tatccatact ttgcatcaat ttcaagcttt cgctagttat cttaaagtta
     2521 aaccttgaag caaatactac cgctcttaat actcttaaac tatcctcttg aaagctttgt
     2581 ttatcaatat gccttaaaaa gcctgctcct agatctttta atcctccata aaaatctaaa
     2641 aactcatcgt taaaaagatt aatcatcata gaatttatgg taaaatcgcg tcttttggcg
     2701 ccaagttttt catcattaca aatttgaact tcaaaacctt tatgtccata gcttatttta
     2761 ttttcggttc tagcaagagc taaatcataa tttttaaact tatacacaaa aaaacttttt
     2821 ccaaagcctt gtgcgcccaa tttttgcata atcttttcaa aatctttagg ttttatatca
     2881 taaagctcta tatcatagtc acaaattttt aagcctaaaa acaaatccct aacgctacct
     2941 ccaaccaaat acgctcgttt ggtataaggc tttaaaaact cagcaataaa ctgtaaatcg
     3001 ggattatttt ttaagcttat cttcgatatt tgcaagtaaa aactctaaaa aatttatggt
     3061 caagtttaac ctattttcaa gatcatcttt ttttatgcta tttaaacctt caaaaagaac
     3121 taaaattctc tctctaagat gttttaaaaa aatatcctca ttaagcgttt gaacctctgt
     3181 cataacacta ggatttaaaa tttcactttg taaaaaaggc tcttcttttt taaactcttt
     3241 attttcctga gtagaaattt caatattatt ttgtattttt tgctcttctt caaattttgc
     3301 catagaaatt ttatcttcta agtcttgcgg agtatcaagc tcttcgcata caaactccat
     3361 aggtggtaat tcatctttta tttcagtttt tctatttaat tcttgttctt ttaaaatttc
     3421 attttgtctt ctttgctctt ccatgataga gctaacttcg ctaatggttt ttttagctaa
     3481 atcttccaaa ttcatatttt tatcaaccac cttttaaatt cattaatttc ttcatcgctt
     3541 ttcatattaa taaaaaaatc caacatttga gtgtttaagt ctttatgctt ggatctaaaa
     3601 ccactaagac gacgaaccgc atcgatagcg ttttgattat ccggatcttc ttttaagata
     3661 tttttataaa tttctaaagc ttcgtctttt aacccttgag cctcatagat ggaagcttca
     3721 gtgactgtat ttttcatcac tgtttcctaa aatttttctt taattctagc aaaaagcttt
     3781 ttaatttatc tttaagaaaa taagatgttt tttaatgtct attttgtttt aaacagtttt
     3841 tctatatatt cttttttttc tttctctaaa ctagaattta attctttttg ttctttttta
     3901 acttgcgctt ttaaatcttg atttttaaaa tacacataat caattccaaa aataacacca
     3961 attataataa gcaatgggat taaaaatacc atctttacac tttaagaaaa ttgattaaat
     4021 acactaccat agtagcgaac attctcagca ttttcatttt tttctatcgt ttctattgca
     4081 ccactattga ttgctttttg gatatcatca tttaaatctt gataagaaaa aaccatatta
     4141 atactgataa tatttggcaa tttctcaagc attttataag agtttaactc atcttctaaa
     4201 ttttcacttt caatcacaac tataatcttt tcattttcac aaagttctac agaacaaaaa
     4261 ggaatttcag atatagcctt ttttaaatca tttatatatt cttcttttgc taaaatcaaa
     4321 acactagaaa gattattcat caatactcct aaacattata ctatcaccaa agcct
//
LOCUS       DAQSLY010000120         4299 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.121, whole genome shotgun sequence.
ACCESSION   DAQSLY010000120 DAQSLY010000000
VERSION     DAQSLY010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.121"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..617)
                     /locus_tag="R2H98_001554"
     CDS             complement(<1..617)
                     /locus_tag="R2H98_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEE9024412.1"
                     /translation="MKDNIFYYQKELEYLYEKREYFIKNYPKLTPFLAYDSKDPDIER
                     IIENLAILSSKIHQELDENIPHIAESLINIVSPNYTNPLPSLCMQEFKFEQNSKENNL
                     IIPKGTLIKSKPIDKCVCEFKTVYDVYLYSISISEVFISSKNQDYTFNLTLQVNKAET
                     KICDLGLEKINLYLGNDTYMSSTLLLYMHSYLKELKIQSLDTDEE"
     gene            complement(614..1006)
                     /gene="tssE"
                     /locus_tag="R2H98_001555"
     CDS             complement(614..1006)
                     /gene="tssE"
                     /locus_tag="R2H98_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssE"
                     /protein_id="HEE9024413.1"
                     /translation="MSLLDKLIHNLDEQNIHIPFYQNDFEDVKNNIKVLLNAKINDCY
                     AVKNLGMPNMADINLNSNELCVSMAKEIRKLIDNYEKRICVVSITYDNNLSPWQLSFI
                     VKCFFQDDRFKEFNIEIIFKNNRYCEVK"
     gene            complement(1009..2463)
                     /gene="tssC"
                     /locus_tag="R2H98_001556"
     CDS             complement(1009..2463)
                     /gene="tssC"
                     /locus_tag="R2H98_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     large subunit"
                     /protein_id="HEE9024414.1"
                     /translation="MANTKAVDMPIIEQIMEKSKYSKTDESYSIAKRGVAEFISEIVK
                     SNNAEEKINKFALDEMIAHIDYLLSKQMDEVLHNEKFQKLESTWRGLRFLVERTDFNE
                     NIKIDLFDIRKEEALEDFENNPDITQSVVYKNIYSSEYGQFGGEPIGAIIGDYQLGSA
                     SPDMTFLNKMASIAAMSHSPFLTSFGPKFFGLDDYSELANIQDLQGLLEGPQYTRWRT
                     FRENEDSKYTGLLVTRFLARSPYDPEENPIKSFNYKENVHASHNHLLWANSSYTFCTR
                     LTESFAKYRWCGNIIGPKSGGTVKDLPTYLYENFGTIQSKIPTEVLITDRREYELAEA
                     GFITLTLRRDSNNAAFFSANSPLKPKLFQNTPEGKEAETNYRLGTQLPYIFLISRLAH
                     YLKVLQREEIGSWKERSDIENGLNEWIRQYISDQENPPSEVRSRRPFRAAQVKVSDIP
                     GEPGWYKIGLSVRPHFKYMGGNFELSLVGKLDKE"
     gene            complement(2465..2950)
                     /gene="tssB"
                     /locus_tag="R2H98_001557"
     CDS             complement(2465..2950)
                     /gene="tssB"
                     /locus_tag="R2H98_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system contractile sheath
                     small subunit"
                     /protein_id="HEE9024415.1"
                     /translation="MSDGSYAPKERINITYKAKTNGQNEDVELPLKLMVMANLKGKNE
                     TPLEEREILQINKINFDQVMRKLNITTSFSVKNTLGTGAEELDVKLNIASMKDFSPDS
                     LAKQIPELNKLLQLREALMALKGPMGNIPDFRKAVLEALKNEKTKEKLLLEIKQEEQG
                     N"
     gene            complement(3019..4266)
                     /locus_tag="R2H98_001558"
     CDS             complement(3019..4266)
                     /locus_tag="R2H98_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system domain-containing
                     protein"
                     /protein_id="HEE9024416.1"
                     /translation="MYFCDQLKNNLDELQEFQLLEDEMSKYKTLNHENISWDKVYQYS
                     QFILLNHSLDFKICNYFLLSCFNLNNGECFEKLLLLFQHLKKLIDENNAYILAQKRKI
                     QIFIQNFIQEYNKTKVLISSEIVNQFITLFSEFENLLSCNFAKIEIAQVAPQLPKSPV
                     TQVSVNIRSDNINSLNEREYKNFYQKLAFELLEEDENNLNIYALFTQAMWGKIRCLPE
                     CNNEKITKIRKPDADIIRILLSDKENDIEHIKCFMHELILNPFWIEGVQLFCDFLEKK
                     KKNKQLDILIILTSDFISKFDTIELLRFQNGDFICKEEVYKYFVKSKENKKSFFSSKK
                     TDKEHTLQDFEQMLMNIDKENFNNSIMNNINSLLDMVKIFESKGMKKNSKILNIYLVE
                     LMEKTLLKDYLAEEYENAKSKIK"
BASE COUNT         1403 a          663 c          517 g         1716 t
ORIGIN      
        1 aattcttcat cagtatctaa actttgaatt tttaattctt ttaaataaga atgcatgtat
       61 aataataaag tactagacat ataggtatca ttgcctagat ataaattaat tttttccaaa
      121 cccaaatcac atatttttgt ttctgcctta ttgacttgca aagttaaatt gaaagtataa
      181 tcttgatttt tactagatat aaaaacttcg ctgatggaga tagaataaag ataaacatca
      241 tatactgttt taaattcaca aacacatttg tctattggtt ttgatttaat aagagttcct
      301 ttgggaataa ttaagttatt ttctttacta ttttgttcaa atttaaattc ttgcatgcat
      361 aaagaaggta aaggatttgt ataatttgga gaaacaatat taatcaaaga ttctgcaatg
      421 tgtggtatat tttcatcaag ctcttgatgg attttagagc ttaaaatagc taaattttca
      481 ataattcttt ctatatcagg atctttgcta tcatatgcca aaaatggtgt taactttgga
      541 taatttttta taaaatactc tcttttttca tatagatatt caagctcttt ttgataataa
      601 aaaatattat ccttcattta acctcgcaat atctattgtt tttaaagatg atttctatat
      661 taaattcttt aaaacgatca tcctgaaaaa aacattttac aataaaagaa agttgccaag
      721 gacttaaatt attatcataa gtgatagaaa ctacacatat tcttttttca tagttatcaa
      781 ttagttttct tatttccttg gccattgata cgcataattc attagagtta agattaatat
      841 cagccatatt aggcattcct aaatttttta cagcataaca atcattaatt tttgcattga
      901 gcaaaacctt tatattgttt tttacatcct caaaatcatt ttgatagaat ggaatatgaa
      961 tgttttgctc atctaaatta tggatcagtt tatctagcaa ggacattatt attctttatc
     1021 taattttcct actaaagaaa gttcaaaatt accgcccata tatttaaaat gaggtcggac
     1081 acttagccct attttatacc atcctggctc tcctggtata tcactaactt tcacttgtgc
     1141 tgctctaaat ggacgacgac ttcttacttc agaaggtgga ttttcttgat cggaaatata
     1201 ttgtctaatc cattcattaa gtccattttc aatatcgctt ctttctttcc agctccctat
     1261 ttcttctcgt tgtaaaacct ttaaatagtg cgccaatctt gaaattaaaa agatatatgg
     1321 aagttgagtt cctaatctgt aatttgtttc agcttcttta ccttctgggg tattttgaaa
     1381 taattttggt tttaacggag aatttgctga aaaaaatgct gcattattac tatctcttct
     1441 taatgttaag gttataaaac ctgcttcagc aagttcatac tctctcctat ctgtaatcaa
     1501 aacttctgta ggtatttttg attgtatagt tccaaaattt tcataaagat aagtaggcag
     1561 atccttaaca gtccctccac tttttggtcc tataatattt ccacaccatc tatatttagc
     1621 aaagctttct gttaatcttg tacaaaaagt atacgaagaa ttagcccaca ataaatgatt
     1681 atgcgaagca tgaacatttt ctttatagtt aaagctttta atagggtttt cttcaggatc
     1741 ataagggctt cttgctaaaa atcttgtcac tagtaagcct gtatatttag agtcttcatt
     1801 ttctctaaaa gttctccacc ttgtatattg aggaccttct agcaaacctt gcaaatcttg
     1861 aatattcgca agttcagaat aatcatcaag cccaaaaaat tttggtccaa aagatgttaa
     1921 aaagggagaa tgactcatag ccgcaatact agccatttta tttaaaaaag tcatatcagg
     1981 acttgctgat ccaagttgat aatctccaat gattgctcct ataggctctc ctccaaattg
     2041 tccatattct gaagaatata tatttttata aacaacgctt tgtgttatat ctggattgtt
     2101 ttcaaaatcc tctaaagctt cttcttttct tatatcaaat aggtcaattt ttatattttc
     2161 attaaaatca gttctttcaa ctagaaatct aagtccacgc caagtagatt caagtttttg
     2221 aaatttttca ttatgtaaaa cttcatccat ttgttttgag agtaaataat caatatgggc
     2281 tatcatttca tcaagtgcaa atttattgat tttttcttca gcattgttgc tttttacaat
     2341 ttctgaaata aattcagcaa cacctctttt agcaatacta taactttcat cggttttaga
     2401 gtatttgctt ttctccataa tttgctcaat aattggcata tcaactgctt tagtatttgc
     2461 catcttaatt tccttgctct tcttgtttaa tttctaaaag taatttttct ttagtttttt
     2521 cattttttaa cgcttctaaa acagcttttc taaaatcagg aatattaccc ataggacctt
     2581 ttaaagccat taatgcttct cttagctgca ataatttgtt tagctcgggt atttgtttag
     2641 ctaagctatc tggagaaaaa tccttcatac tagcaatatt gagcttaaca tcaagctctt
     2701 cagctcctgt tccaagagtg ttttttacgc taaaacttgt tgttatattg agttttctca
     2761 tgacttgatc aaaattaatc ttattaattt gcaaaatttc tctttcctct aaaggagttt
     2821 cgttttttcc ttttaaattt gccattacca ttaattttaa cggcaactcc acatcctcat
     2881 tttgtccatt agttttagct ttatatgtaa tattaatccg ctcttttgga gcataagatc
     2941 catctgacat ttaaaatcct taaaaacaaa atttttagtt taataattat attaaaattt
     3001 actaaattta atcttgtatc acttaatttt actttttgcg ttttcgtatt cttcggctag
     3061 ataatctttt agtagagttt tctccattaa ctctactaag tatatattta aaattttaga
     3121 gttctttttc attccttttg actcaaaaat ttttaccata tctagcaagg aattaatatt
     3181 attcataata gaattattaa aattttcttt atcaatattc atcagcattt gctcaaaatc
     3241 ttgtagtgta tgttctttgt cagttttttt acttgaaaaa aaactttttt tattttcttt
     3301 ggatttaaca aaatatttat aaacttcttc tttgcagata aaatcaccat tttgaaaacg
     3361 gagaagttca atagtatcaa atttagaaat aaaatcactt gttaatatta taagaatgtc
     3421 taattgttta ttttttttct ttttttctaa aaaatcacaa aagagttgta caccctctat
     3481 ccaaaaagga tttaaaataa gttcatgcat aaaacattta atatgttcta tatcattttc
     3541 tttatcagaa agtaatatgc gaattatatc tgcatcaggt tttcttattt tagtaatttt
     3601 ttcattatta cattcaggca aacacctgat ttttccccac attgcttggg tgaataaagc
     3661 gtagatattg agattatttt catcctcttc caaaagctca aatgcaagtt tttgataaaa
     3721 atttttatat tctctctcgt ttaaagagtt aatattatcg cttctaatgt ttacagatac
     3781 ttgagttaca ggagattttg gaagttgtgg tgcaacttga gcaatttcaa tttttgcaaa
     3841 attgcaagat agtaaatttt caaattcgga aaataaagta ataaattgat taacaatctc
     3901 agatgatata agcacttttg ttttattgta ttcttgaata aaattttgaa taaaaatttg
     3961 aatttttcgc ttttgagcta atatataagc attattttca tctataagtt tttttaaatg
     4021 ttgaaaaaga agcaaaagct tttcaaagca ttctccattg tttaaattaa aacacgataa
     4081 aagaaaatag ttgcaaattt taaaatctaa agaatgattt aataatataa actgagaata
     4141 ttgataaact ttatcccaag aaatattttc atggtttaaa gtcttatatt ttgacatctc
     4201 atcttcaagt aactgaaatt cttgtagttc atctaaatta tttttcaatt gatcacaaaa
     4261 atacatttaa ttcctccaaa aatttgcctc attataatt
//
LOCUS       DAQSLY010000121         4255 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.122, whole genome shotgun sequence.
ACCESSION   DAQSLY010000121 DAQSLY010000000
VERSION     DAQSLY010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.122"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..581
                     /locus_tag="R2H98_001559"
     CDS             <1..581
                     /locus_tag="R2H98_001559"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024417.1"
                     /translation="YTHYVVKPWESYYTEFDVNYYPVHYDYYDEWWYVAFNTPFFNKE
                     LIKLNKMIKNKELENYSKTLAFVLNYKMGNIASIRIRNHLAYKIGNLILDTKQFNKIL
                     KFPFLFISMVFRHYMNNIISKILFNAIPYLKPLPLVFCIDYIEALKIKKHLSYRYGKI
                     VLYCFKYWYKGKIFAIPYLLLKEYKEFKKNKK"
     gene            complement(591..1943)
                     /locus_tag="R2H98_001560"
     CDS             complement(591..1943)
                     /locus_tag="R2H98_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HEE9024418.1"
                     /translation="MHNLNFSHPFLNKLIAYKDLNCLVYKDKTYSYLELLLEVEKYIG
                     QLNNLKGIIGILGDYNLKSIALLLACIEKRLIVAPFLKLKNQDFKELEDKIYEGQIDY
                     LYDEGRFIPYQSKQLKHNLIYTLQNHSSSGLILFSSGSTGKPKAMVHNLDVILNVYQG
                     KKPKVMNIVLFLMFDHIGGLNTLFNVLGMGACGIALEDRKNIEALAQNIQKYQVSLLP
                     ASPSLLNLILMSGVKEKYDLNSLKLITYGTEKMSDSLLNRLKLEFPKVRFHQTFGTSE
                     VGIAQTKTKDNMIKLEGMAYKIINNELYLKSKTQSLGYLNADNSVFDEEGYFATGDLV
                     ELYKENGEEYIKIIGRSKELINVGGEKVVPQEVEGVILELDYIQDCLVYAKANTITGQ
                     SVCVEVLLKPNIEFTNLELKKQLRMYCKDKLANYKIPTQVEIVDGLELSQRFKKVRKG
                     "
     gene            complement(1936..2667)
                     /locus_tag="R2H98_001561"
     CDS             complement(1936..2667)
                     /locus_tag="R2H98_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEE9024419.1"
                     /translation="MQKVILITGTRKGIGKQLSEHYLSLGHTVCGCSRGASSINHINY
                     RHFELDVSDEEKVVSMVRAVRKEFSRIDVLLNNAGIASMNHILTTPYKSVNNIFNTNV
                     FGTFLFTREVAKVMGNIYKKNYKNTKTMPFRIVNFTTVATPLRLEGEAIYAASKAALV
                     NLTQVCAKELSEFGITVNAVGPTPVPTDLIKNVPQNKLDVLLNQQAIKRFGEFEDVLN
                     VIEFFLNEKSGFITSQVVYLGGVNA"
     gene            complement(2669..2962)
                     /locus_tag="R2H98_001562"
     CDS             complement(2669..2962)
                     /locus_tag="R2H98_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024420.1"
                     /translation="MEEKIISIILNVLKNSADDYEIEELKSANKDTKLYSGLGGLLDS
                     LALVSLITDLEESLATELNIEITLADEKMMSLRNSPFKDVQTLAQYIASQIKA"
     gene            3088..>4255
                     /locus_tag="R2H98_001563"
     CDS             3088..>4255
                     /locus_tag="R2H98_001563"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024421.1"
                     /translation="MNKNIVLLGASNSRIPGGLQAGLNQKNINLYNLSIGGTDSIHKI
                     YELKRKENKDLIQNADLIILEVNLMDVTMSFCYKNLDFKIIKYINYLYEQLYLLKKKI
                     LVLLLFDLRCINDNKNKSANFITKIHKQLSLFYDFNLIDLHQKMIDTKCFKFYTASLD
                     PYHLLATIMYQLGKNISENLNYFKFSERKLIFETNAIFKVLSPSDLISNPCLKAYKDL
                     IYNDKYVEILDKDLISFPKPYIGYKILGVHTFLPTKKGVLSSYQSMCENYFSMVFKNS
                     KKEIVKSFRCYNNFDWLYDDFVIDSDTIVMYNKDNLPITEISYETTIINNLSNTSDKA
                     SIVNFLLVKDDPNFIQIKNNFSQYKYTKDFSYLIPPIEMYRDIIEEYTLKTSKLI"
BASE COUNT         1566 a          614 c          482 g         1593 t
ORIGIN      
        1 attatactca ttatgttgta aagccttggg agagctatta tacggaattt gatgtaaatt
       61 actatccggt acattatgat tactatgatg aatggtggta tgttgctttt aatactcctt
      121 tttttaataa agagctaatt aaattaaata aaatgattaa aaataaagag cttgaaaatt
      181 attccaaaac attagctttt gtattaaatt ataagatggg aaatatagct tcaattagga
      241 ttcgaaatca cttggcttat aaaattggaa atttaatatt ggatactaaa caatttaata
      301 aaatattaaa atttccattt ctatttatat caatggtatt tcgtcattat atgaataata
      361 taatttcaaa aatattattt aatgcaattc cttatttaaa acccttgcct ttagtttttt
      421 gcatagatta tatcgaagca ctaaaaatta aaaagcattt atcatataga tatggtaaga
      481 ttgtgctcta ttgttttaaa tattggtata aaggtaaaat atttgctatt ccttatcttt
      541 tgttaaaaga atataaagaa tttaaaaaaa ataaaaaata atcttacatt ttaacccttc
      601 ctcaccttct taaacctttg gcttaattct aatccatcta caatctcaac ttgagttggg
      661 attttataat tagccaattt atctttacaa tacattctta attgtttttt gagttcaagg
      721 tttgtaaatt ctatatttgg ttttaaaagc acctctacac aaacactttg tcctgtaata
      781 gtattagctt ttgcatacac taagcaatct tgtatatagt caagttctaa aatcacccct
      841 tcaacttctt gagggacaac tttctctcct cctacattta taagctcttt gcttcttcct
      901 atgattttta tatattcttc tccattttct ttataaagct caactaaatc tcctgttgca
      961 aaatatccct cttcatcaaa tacactatta tcagcattta aataacctaa gctttgggtt
     1021 ttacttttta agtaaagctc attattaata atcttataag ccataccttc taatttaatc
     1081 atattatctt tagttttagt ttgagctata ccaacttcac ttgtgccaaa tgtttgatga
     1141 aatctaactt taggaaattc caattttaag cgattaagta aagaatcact cattttttct
     1201 gtcccatatg taataagttt taaagaattt aaatcatact tttcttttac tccactcatt
     1261 agtataagat ttagtaaact tggacttgca ggcagtaaag aaacttggta tttttgtata
     1321 ttttgcgcta aagcttcaat attctttctg tcttctaaag ctataccaca agcacccata
     1381 cctaaaacat taaataaagt atttaaacca ccaatatgat caaacattaa aaacaaaaca
     1441 atattcataa ccttaggttt tttaccttga taaacattta aaataacatc aagattatga
     1501 accatagctt taggttttcc agtgcttcca cttgaaaaaa gaatcaaacc actagatgaa
     1561 tgattttgaa gagtatagat aagattatgt tttaactgct tactttgata aggtataaac
     1621 ctaccttcat cataaagata atctatttgc ccctcataga ttttatcttc taattcttta
     1681 aaatcttgat tttttaattt taaaaaagga gcaacaatta atcttttttc tatacaagct
     1741 aacaataaag ctatactttt taagttgtaa tctcctaaaa ttccaataat gccttttaaa
     1801 ttatttaatt gaccaatata tttctcaact tctagtaaaa gttccaaata agaataagtt
     1861 ttatctttat aaactaaaca atttaaatct ttataagcta taagtttgtt taaaaaagga
     1921 tgagaaaaat ttaaattatg cattaactcc acccaaataa actacttgcg aggttataaa
     1981 accacttttt tcattaagaa aaaactcaat gacatttaac acatcttcaa attccccaaa
     2041 gcgtttaatg gcttgctgat ttaataaaac atcgagttta ttttgaggaa catttttaat
     2101 taaatccgtt ggaacaggtg taggaccaac agcatttaca gtaataccaa attcacttaa
     2161 ttctttagcg cacacttgag ttaaattaac taaagcagct ttagatgctg catatatggc
     2221 ttcaccttcg agtcttaaag gagtggcaac agtagtaaaa ttaactatac gaaaaggcat
     2281 ggtttttgtg tttttataat tttttttata aatattgccc ataactttag caacttctct
     2341 tgtaaataaa aaagtaccaa aaacattggt attgaaaata ttattaacgc ttttataagg
     2401 cgtggttaaa atatgattca tagaagcaat gcctgcatta tttaacaata catctatacg
     2461 agaaaattct ttacgcacag cacgaaccat agaaactact ttttcttcat cgcttacatc
     2521 aagctcaaaa tgtctataat ttatatgatt tatacttgaa gcacctctag aacatccaca
     2581 aactgtatga cctaaagaaa gataatgctc gcttaattgt ttacctatac cttttcttgt
     2641 tcctgttata agaatgactt tttgcattct atgccttaat ttgacttgct atatattgag
     2701 ctagtgtttg aacatcttta aaaggagagt ttctcaaact catcattttt tcatctgcaa
     2761 gagttatttc tatattaagt tctgtagcta aactttcctc taaatctgta attaagctaa
     2821 caagagctaa agagtctaaa agacctccta atccgctata aagtttagta tccttattgg
     2881 ctgattttaa ttcttctatt tcataatcat cagctgaatt ttttaaaaca tttaaaatta
     2941 tagaaattat tttttcttcc ataaaaattt tctccttgat atcaaagata atttctatat
     3001 tatagatcta tttataaaat tatccttgta tatttttaag tattatatta tataattatt
     3061 aataagttta attgtggaaa taaaattatg aataaaaata tagtattatt aggagctagc
     3121 aattcaagaa ttcctggtgg acttcaagct ggcttaaatc aaaaaaatat taacttgtat
     3181 aatctatcta taggtgggac agattctata cataaaattt atgaacttaa aaggaaagaa
     3241 aataaagatt tgattcaaaa tgctgatttg attatacttg aagtaaatct aatggatgta
     3301 acgatgagtt tttgttacaa aaatcttgat tttaagataa ttaaatatat caattatctt
     3361 tatgagcaat tatacttatt aaaaaagaaa attttagttt tattactttt tgacttaaga
     3421 tgcataaacg ataataaaaa caaaagtgct aattttatta caaaaattca taaacaatta
     3481 agtttatttt atgattttaa tctgattgat ttgcatcaaa aaatgattga tacaaaatgt
     3541 tttaagtttt ataccgcatc cctagatccc taccatctcc tagctactat aatgtaccaa
     3601 cttggaaaaa atatttctga aaacttaaat tattttaaat tttcagaaag gaaattaatt
     3661 tttgagacaa atgcaatttt taaagttctt agtccatctg atttaatatc taatccttgc
     3721 cttaaagcat ataaagatct aatttacaat gataaatatg ttgaaatttt agataaagat
     3781 ttaatttctt ttccaaaacc atatataggc tataaaattt taggagtaca tacttttctt
     3841 ccaactaaaa aaggagtatt atcttcttat caatcaatgt gtgaaaacta ctttagcatg
     3901 gtttttaaaa attcaaaaaa agaaatagta aaaagtttta gatgttacaa caattttgat
     3961 tggctatatg atgattttgt aatcgatagt gatactatcg ttatgtataa taaagacaat
     4021 ctgcctataa cagaaatttc ttatgagaca actataatta ataatctatc caatacatca
     4081 gataaagcat ctatagtcaa ttttttactt gttaaagatg atccgaattt cattcaaata
     4141 aaaaataatt tttcgcaata taaatataca aaagattttt catatttaat tccacctatc
     4201 gaaatgtata gagatattat agaagaatat acactaaaaa caagtaaatt aattg
//
LOCUS       DAQSLY010000122         4166 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.123, whole genome shotgun sequence.
ACCESSION   DAQSLY010000122 DAQSLY010000000
VERSION     DAQSLY010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.123"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..707)
                     /locus_tag="R2H98_001564"
     CDS             complement(<1..707)
                     /locus_tag="R2H98_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter TrkA"
                     /protein_id="HEE9024422.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDM"
     gene            737..1858
                     /gene="tgt"
                     /locus_tag="R2H98_001565"
     CDS             737..1858
                     /gene="tgt"
                     /locus_tag="R2H98_001565"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEE9024423.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAIAYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            1860..2627
                     /locus_tag="R2H98_001566"
     CDS             1860..2627
                     /locus_tag="R2H98_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEE9024424.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQDGEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     VDTLYTLTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            2680..2756
                     /locus_tag="R2H98_001567"
     tRNA            2680..2756
                     /locus_tag="R2H98_001567"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2714..2716,aa:Arg,seq:gcg)
     gene            3102..3530
                     /locus_tag="R2H98_001568"
     CDS             3102..3530
                     /locus_tag="R2H98_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024425.1"
                     /translation="MQSIKIGKYPTTTLSSAREKANIFNNMLTEKIDPKEQIQKEDIK
                     KSKTLIIHLNSYLEAENNLQKIKILVKIYQNLQKCSRTPDLIDIEELEFNKEDIFEEL
                     FYALGGLGGMYSVEMIQSRIANFIKILGGEPKLLLERFTA"
     gene            complement(3574..>4166)
                     /locus_tag="R2H98_001569"
     CDS             complement(3574..>4166)
                     /locus_tag="R2H98_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEE9024426.1"
                     /translation="IRFRTEKSEEKLNYLNENEIIRLNNVLEKEKAKKEVYNSFRNSL
                     LIKLMLYGGLRISEALNVKLCDFEEVDDEILKISIIGKGGKEQFAFIKKEEVDDELEY
                     FKENIQDSDYIMQTSTGKHLNRSNAFLIVNNIYAKALISKKGLHLLRHTLAMRLTAKG
                     TNLVVIQKILRHANLNTTTIYAKATNDTVKAALLNN"
BASE COUNT         1556 a          599 c          568 g         1443 t
ORIGIN      
        1 ttcatatcaa ttaaagcaaa aacattactt ccaaaaggca taggaaattg ccctgctttg
       61 cctcttatat tatgaaaaat actttgtaaa acaacaggat ccccaacgat caaaatgcta
      121 tcatttggct ctagaacaaa agatggtttt acaaaataaa ttttagaatt tctataaata
      181 aggactatgc gccacctttt ttgttgtatt gaacttatgt gcctataagc aaaaatagac
      241 cctgctggaa tttttacttc cataatctcc ccaactccaa gtcctatata ctgagctgtt
      301 aaagcaatat ctggtaaaaa atccataaat ctacggctta aagtcattct agcatcagct
      361 aaatttgcat gagtatcatt aacacttaac ccccaaaaat ccattatttc tatttctaaa
      421 tttggattta aagaacgcaa agcctcataa ctttttttag tttcaaattc atcttgcata
      481 taaataaaag cctgtttaaa atccttactc ataatatttt caagacgcgc tgtgcttgta
      541 ggatcaaaat aatgcaagtc aatatactca ctagaaatat ttaagttatt tttttcacta
      601 ttttgacaca ctactgtaaa aaagtaacct aagccttttt caaaacaaag cctttctaag
      661 aaatgctttg ctaaaatacc atctattata attaaaatat tattcatttt aaactccaaa
      721 aaggaaatta taacaaatgg aatttaaatt aaagcataaa gatggaatgg caagggtttg
      781 tgaaatcact accgcacaca gcactttttt aacccctgtt tttatgcctg ttggcacagt
      841 aggagcggtt aaaagtcttg atgctaatga tatgaaaaat gagcttgatg caaaaattat
      901 tttagcaaat acctatcaca tgtacttgcg tccaacttcc aaagtagtaa aagattttgg
      961 aggtttacat ggatttacga aatttgatag aagtttttta accgatagtg gtggttttca
     1021 agctttttct ttaagtaaaa attccaaaca ttttaatgaa ggtatagaat ttaaaagtca
     1081 cattgatgga agtcgtcatc tttttactcc aaaaagtgtt ttagataccc aatatgattt
     1141 taactctgat attatgatga ttttagatga tttagtagcc ctacctgcaa ccaaagaaag
     1201 ggttaaaatt tctgttgatc gcactatact ttgggcaaaa gaagctattg cttatcataa
     1261 aaatatgcaa aataaaggta taggtatagg gcaaaatatt tttggtatta tccaaggtgg
     1321 cacagattat gaagaaagaa agcgttgtgc tttaagttta aacgaaatgc catttgatgg
     1381 tttagctata ggtgggctta gcgtgggcga agaaaacgcc ttgatgtacg aaacagtcca
     1441 aaacttaaac ccttatctag atgaaaatcg tccaagatat ttaatgggcg taggaacgcc
     1501 tgaagattta gtagaaaatg ttgagcgagg agtagatatg tttgactgtg tgatgccaac
     1561 tagaaatgca agaaatggaa catttttcac aagttttgga aaatttaata tcaaaaaagc
     1621 agaatttatc aacgatcatg aagttataga ttctacttgc tcatgttata cttgtcgtaa
     1681 tttttcaagg ggttatttaa accatctttt taaagctaaa gaacttactt tttttcgttt
     1741 ggcaagtctg cacaatctac attattatct tgaacttgca agaaagatgc gtgaagcaat
     1801 tttgaacaat tcttttacgc aatttaaaag aaatttttat cacttaagag gcaaataaaa
     1861 tgctagaact acacgaaaat ctaaaaaaaa tcctacaagc aaagaattta gaaacttttt
     1921 atagtgaaat ttatggacaa aaaatttttg tttatgtggg attaaatttg gaaacttggc
     1981 tttttaacga tgaaaaaatt tataaacttc aagatggaga atttaagctt tctagcatag
     2041 aagaattttc aaattttatt aaatccattt tagaagattt taaagtacaa aatactcatt
     2101 ttcaaaacct tttagaacac aaagaaggta ttatcttaaa aggtggtttt gttaaaaatt
     2161 tttacaaaaa atcctttgtg ttaagacaaa aaatcaacaa aaatctaaag caaattaatc
     2221 ttctaagcga agctttcaat cttttgctta gtgaacaagc acaatataaa aaacatttaa
     2281 aaattttaaa tttatccatc agcatcttaa gtaaaaacac caaagaacat ctagcaagag
     2341 ttgatactct ttatacatta acaaatgcaa ttaaaaatga aaaaatgaat aaaagtattt
     2401 atcttttaag tatactttct tctattttct tgcctttaaa tttaatcgta ggattttttg
     2461 gaatgaatac taataatctt tttttcaaag atagccctta tggtacactt tatatttttt
     2521 ctttgatttg ctgtattttg attgtaggtt ttatatttta ttattcaaaa aagactaaag
     2581 aatttgattt agatgaaggt aaaaaagcta aaaaacaaac aaaataagca aaattttgct
     2641 tattttaaga atatttatat ataattttaa cttatttttg cgctcatagc tcagctggat
     2701 agagcatttg attgcggttc aaaaggccag aggttcgaat cctcttgagc gcaccatcac
     2761 ttcttttctt aaataatctt gaatcatctg aaataatcat ctaaagcatg atatagcaat
     2821 gtttgaaagc ttctaaaata atctcaaata atcaattttg acaattttaa aagtatatgt
     2881 tatagtatat gttaaatttt aaaattcaaa aataacatat actttttaac ataggaatat
     2941 taaaaatgat tattgttaat gataagcaac ttaaaacttt aattgtaaaa aaagaacata
     3001 tattaaagat gcatgcacaa aaaatctcta catcgaagca aaagattcgc taaaaggtac
     3061 tattatcttt tttttatttt agatataggt taaacaaaaa aatacaaagt attaaaatag
     3121 gaaaataccc aacaaccaca ctgtcaagcg caagagaaaa agcaaatatt tttaataata
     3181 tgttaactga aaaaattgat cccaaggaac aaattcaaaa agaagatata aaaaaatcaa
     3241 aaaccctaat aatacactta aattcttatt tagaggctga aaataatcta caaaaaatca
     3301 agattttagt caaaatatat caaaatttac aaaaatgtag ccgaactcct gatcttattg
     3361 atatagaaga acttgaattt aacaaagaag acattttcga agaattattt tatgctttag
     3421 gcggtttagg aggtatgtat tccgtagaaa tgatacaatc aagaattgca aatttcatca
     3481 aaatacttgg cggagaacct aaacttttat tagaaagatt cacagcatag acttcaaaaa
     3541 gaagtctatg taaataatca attttagaaa aaattaatta tttaataacg cagcttttac
     3601 tgtatcattt gttgctttgg catatatagt agtagtattt agatttgcat gtcttagaat
     3661 tttttgtatg accacaaggt ttgttccttt ggctgttaat ctcatggcta aagtgtgtct
     3721 aagcaaatga agtccttttt tgctgatcaa agctttagcg taaatattat ttacaatcaa
     3781 aaaagcatta cttctattta aatgttttcc tgtgctagtt tgcattatgt aatcactatc
     3841 ttggatattt tctttaaaat attcaagctc atcatctact tcttcttttt taataaatgc
     3901 aaattgttct ttaccgccct tgcctattat ggatattttt aatatttcat catcaacctc
     3961 ttcaaaatca caaagtttta catttaaagc ttcagaaatt ctaagtcctc cataaagcat
     4021 aagttttatc agtaaagagt ttctaaaact attataaact tctttttttg ctttttcttt
     4081 ctctaaaaca ttatttagcc ttataatttc attttcatta agataattta atttttcttc
     4141 tgatttttct gttctaaatc taattt
//
LOCUS       DAQSLY010000123         4039 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.124, whole genome shotgun sequence.
ACCESSION   DAQSLY010000123 DAQSLY010000000
VERSION     DAQSLY010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4039)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4039)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4039
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.124"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            124..852
                     /locus_tag="R2H98_001570"
     CDS             124..852
                     /locus_tag="R2H98_001570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024427.1"
                     /translation="MTLRPIVTLNQVGYCIKEGRRLSQNELFERATKDWLEKLYNQAH
                     DPLVMNADGDWLDITNCYYSSKEKAKKGLNCQFYSNGKQFGIDDIAKQIDLNKSQEEN
                     MQKIMQGFSIVRPFEEEKILTDDLELKYSLLLQDRLGDFTFMPYDIRFIVVGGDTGYY
                     SKFGYSVFALMIQKYFIGNDHDFKFKKGTVEYWKNKDNKNNHEYIYYPITNCGEVEMR
                     YDFDPPGLYYQLFHDMQWRDEWHR"
     gene            840..2792
                     /locus_tag="R2H98_001571"
     CDS             840..2792
                     /locus_tag="R2H98_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024428.1"
                     /translation="MASLNLKGDYGVEILSYYLWGQSTPPSDLARKDNRVLIGKDYQA
                     RDEKEIIIQASALDYMKYVDRYTNATNFGIFQNFFKSVFSEKELGEFKDKIENETYIL
                     ELDDIIKTKVYGGVNPFLDEDNKNKDKSTKDKENNEENKYEKYDENKMAVRIIHYYLD
                     TNSGNYAKRAFAFGSTSIAFNKDVKFHISAKTYEPVCISNLKLYPLKDNFDFESDSSL
                     AEFVNFFLEKELDPLKIGRTVNIHFIDQEKITPIVIYKRVFQILQNQSFNSLTPSITS
                     LREYYKTRILPSGVLYLQDDNTNSQTNLEQTILYNNTSFNKISKEPLNESSSSAKKPC
                     FITLYLKDEHNKPIANAKIIIKGFKHDEALRVVNLKRRSDEKGKIRFDKEKYFSDCYS
                     FKVKLDESKAYFPTPLQNAKRIFNNYTHHKVGLILKFKAKDHLVYDGFNLYHYKGNEL
                     INSYMARSGTAKADNQKRSKKQIAHYFYQDEKDKSKSGKAYFYYDDESIQDRFGTLPE
                     GEYYLKINEIAKDTKPNFLKDYPFEIGKTWGRYCVRLYTDKECSKTFKEVKIKESNEK
                     ENKTSKKDKKEQSIIKDNLYLYSINEKGEFGSSGSIGMAQAQLLEDLNKQAKFVRSEG
                     ENIISLKVAYPEKIDNKIIFVGKVYE"
     gene            2785..>4039
                     /locus_tag="R2H98_001572"
     CDS             2785..>4039
                     /locus_tag="R2H98_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024429.1"
                     /translation="MNKTLIFHENSHIDLNASFAPGTYISLQLEKESDEKLKWAFVEC
                     ESKEKLNLLLHDCNGYIDEKNLKVLFENDDLIYNESYEDNILSFCLPINRSNEPKEDI
                     QDYKYYIVLFAYSSEKTMPNLEDHYIIIDMSFRVGVGDDEDVEESKLRNDFNSDIIQT
                     NCIFSVFEAVEFLKACQSFKEKAKETNNYEFFKNYPQLAGKIAYIYYRFDLANEKFIK
                     SVSDGDKYLKEREKFVKKFIDVYSDEKFFIIPSYKAKFSEFSNKSDEEKIMFFQEFLE
                     DLVKAFDIEPPIPTIYKEFKQYNNGSYNSVGKKALYLNLKNKEEQILSTFFHEFRHFY
                     IDKNNSKEIKNQHTESIFKLIYSNEYFKFENVVMFWAYDKKCIISNNYTDCVGVKPYK
                     YSIFSDKPAIYWFSPSERDARISTFY"
BASE COUNT         1657 a          454 c          638 g         1290 t
ORIGIN      
        1 cttttttata gacttaattt tttatttaat acaaaattaa aaaaattaac ttggattgta
       61 gctatattat ttatcggata taaattactt ttttataccg aaattaaaaa tggttatgta
      121 aaagtgactt tacgtcctat agtaacactt aatcaagtgg gttattgcat aaaagaaggt
      181 agaagattaa gccaaaatga attatttgaa agagctacta aagattggct tgaaaaactt
      241 tataaccaag cacatgatcc actagttatg aatgcagatg gagattggct tgatatcact
      301 aattgctatt attcaagcaa agaaaaagca aagaaaggtt taaattgtca attttacagc
      361 aacggcaaac aatttggtat cgatgatatt gcaaaacaaa ttgatcttaa taaaagccaa
      421 gaagaaaata tgcaaaaaat aatgcaaggc tttagcattg taagaccttt tgaggaggaa
      481 aaaattttaa cagatgattt agagcttaaa tattctttac tcttacaaga taggttaggt
      541 gattttactt ttatgcctta tgatattaga tttattgtcg ttggtggtga tactggttat
      601 tattcaaaat ttggttattc tgtttttgct ttaatgatac aaaaatattt tattggaaac
      661 gaccatgact ttaaatttaa aaaaggcact gtagaatatt ggaaaaataa agataataaa
      721 aacaatcatg aatacatata ttatcccatt acaaattgtg gcgaagttga aatgcgttat
      781 gactttgatc ctcctggatt atattatcaa ttatttcatg atatgcaatg gagggatgaa
      841 tggcatcgtt aaatttaaaa ggcgattatg gagtagaaat tttatcctat tatctttggg
      901 ggcaaagcac accgccaagt gatttagcca gaaaagataa ccgtgtgctt ataggtaaag
      961 attatcaagc aagagatgaa aaagaaataa tcatacaagc ttcagcactt gattatatga
     1021 aatatgtaga tagatatacc aatgctacaa attttgggat atttcaaaat tttttcaaaa
     1081 gtgtttttag tgaaaaagaa cttggggaat ttaaagataa aatagaaaat gaaacatata
     1141 ttttagaatt agacgatatc ataaaaacta aggtatatgg aggtgtaaat ccgtttcttg
     1201 atgaagataa taagaataaa gataaaagca ctaaagataa agaaaataat gaagaaaata
     1261 aatacgaaaa atacgatgaa aataaaatgg cagttagaat aattcattat tatttagata
     1321 caaattcagg caattatgct aaaagagctt ttgcttttgg aagcacaagt atagcattta
     1381 ataaagatgt aaaatttcat attagtgcta aaacttatga acctgtttgt atttccaatc
     1441 taaaacttta tcctttaaag gataattttg attttgaaag tgatagcagt cttgcagaat
     1501 ttgtaaattt ctttctagaa aaggaattag atcccttaaa aataggtaga acggttaata
     1561 ttcattttat agatcaagaa aagattacac ctatagttat ttataaaaga gtatttcaaa
     1621 tacttcaaaa ccaatctttt aattctttaa ctccttctat aacttcactt cgtgaatatt
     1681 ataaaacccg tatcctgcca tctggggtat tatatttgca agatgacaat acaaactctc
     1741 aaaccaattt agaacagact atcctctaca acaatacaag ttttaacaaa atttcaaaag
     1801 aacccttaaa tgaatcctca tccagtgcta aaaaaccttg ctttatcact ttatatttaa
     1861 aagatgaaca caataaaccc attgctaatg ctaaaatcat tatcaaaggt tttaaacacg
     1921 atgaagcttt aagagtagtt aatctaaaaa gacgcagtga tgaaaagggt aaaataagat
     1981 ttgataaaga aaagtatttt agtgattgtt atagctttaa agtaaagctt gatgaaagca
     2041 aagcttattt tcctactcct ttacaaaatg ctaaaaggat atttaataat tatacccatc
     2101 acaaagttgg acttatactt aaatttaaag ctaaagatca tttagtttat gatggattta
     2161 atctctatca ttacaaagga aatgaattaa ttaattctta catggcaaga agtggcactg
     2221 ctaaggcaga caatcaaaaa agaagtaaaa aacaaattgc acattatttt taccaagatg
     2281 aaaaagataa aagcaaaagt ggaaaggctt atttttacta tgatgatgaa agcattcaag
     2341 atagatttgg cactttacct gaaggggagt attatttaaa aatcaatgaa atagctaaag
     2401 atactaagcc taacttttta aaagattatc cctttgaaat aggaaaaact tggggaagat
     2461 actgcgtaag attatatact gataaagaat gctctaaaac ttttaaagaa gtaaaaataa
     2521 aagaaagtaa tgaaaaagaa aacaaaacaa gcaaaaaaga taaaaaagag caaagcataa
     2581 taaaagataa tctatacctt tactctatca atgaaaaggg agagtttggc agtagtggta
     2641 gcataggtat ggcacaagca cagttattag aggatttaaa taagcaagct aagtttgtgc
     2701 ggagtgaggg ggaaaatata atctcactca aagtggctta ccctgaaaaa atagataata
     2761 aaattatatt tgtaggaaaa gtttatgaat aaaacactaa tatttcatga aaattcccat
     2821 attgatttaa atgcttcttt tgcaccaggg acttatataa gcttacaact agaaaaagaa
     2881 agcgatgaaa aactaaaatg ggcttttgta gaatgtgaaa gcaaagaaaa attaaattta
     2941 ttattacatg attgtaatgg ctatattgat gaaaaaaatc ttaaggtatt atttgaaaat
     3001 gatgatttga tttataatga aagctatgaa gacaatattt tatccttttg cttgcctata
     3061 aatagaagta acgagcctaa agaagacata caagattata aatactacat agttttattt
     3121 gcttatagta gtgaaaaaac tatgcctaat ttagaagatc attacatcat catagatatg
     3181 agctttagag tgggagttgg agatgatgag gatgtagaag aaagtaaact aaggaatgat
     3241 tttaatagtg atataattca aacaaattgt atttttagtg tttttgaggc tgtagagttt
     3301 ttaaaagctt gccaaagttt taaagaaaaa gcaaaagaaa caaataatta tgaatttttt
     3361 aaaaattatc cccaacttgc aggaaaaatt gcttatattt attatagatt tgatttagct
     3421 aatgaaaaat ttattaaaag tgtaagtgat ggagataagt atttaaaaga aagggagaaa
     3481 tttgttaaaa aatttataga tgtttattct gatgagaaat tttttatcat accaagctat
     3541 aaagcaaaat ttagtgaatt ttcaaacaaa agtgatgagg aaaaaattat gttttttcaa
     3601 gaatttcttg aagatttggt aaaagctttc gacatagaac caccaattcc aactatttat
     3661 aaagagttta aacaatacaa taacggatct tataatagtg taggaaaaaa agcattatat
     3721 ttgaatttaa aaaacaaaga agaacagata ttatcaactt tttttcacga atttagacat
     3781 ttttatattg ataaaaataa ttctaaagaa ataaaaaatc aacatacaga aagcattttt
     3841 aaactcatat attctaatga atattttaaa tttgaaaatg ttgttatgtt ttgggcgtat
     3901 gataaaaaat gcataattag taataattat acagattgtg tcggagttaa accttataaa
     3961 tacagtatat tttcagataa acctgcaatt tattggtttt ctccaagtga aagagatgcg
     4021 agaataagca cattttatt
//
LOCUS       DAQSLY010000124         3908 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.125, whole genome shotgun sequence.
ACCESSION   DAQSLY010000124 DAQSLY010000000
VERSION     DAQSLY010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3908
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.125"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            67..732
                     /gene="dccR"
                     /locus_tag="R2H98_001573"
     CDS             67..732
                     /gene="dccR"
                     /locus_tag="R2H98_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEE9024430.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            725..1915
                     /gene="dccS"
                     /locus_tag="R2H98_001574"
     CDS             725..1915
                     /gene="dccS"
                     /locus_tag="R2H98_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEE9024431.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGTTL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISILNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(1958..3595)
                     /gene="groL"
                     /locus_tag="R2H98_001575"
     CDS             complement(1958..3595)
                     /gene="groL"
                     /locus_tag="R2H98_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEE9024432.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(3617..3877)
                     /gene="groES"
                     /locus_tag="R2H98_001576"
     CDS             complement(3617..3877)
                     /gene="groES"
                     /locus_tag="R2H98_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEE9024433.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
BASE COUNT         1244 a          630 c          602 g         1432 t
ORIGIN      
        1 taattgataa gaattttgat acaatgatat atatttaaga gatttgaagt tagaaagatt
       61 taaattatgg ctgctaaaat tttactttta gaagatgatt tgagcttgag tgagatcatt
      121 gaagagtttt taaacgatga gggatatgaa gtatttttat gcgataatgc gcaagaagct
      181 ttagatatgg cttatgaaag atattttgat ctttggattt tagatgtaaa agttccttta
      241 ggagatggat tttcattact taaagaatta agaaaaagcg gaaagcaaac tccagcaatt
      301 ttcatgactt ctttaaacac aacaaacgat ttaaaacaag gctttgacgc aggttgtgat
      361 gattatataa aaaaaccttt tgaacttgcc gagttatcta tcagggttaa agctttgctt
      421 aaaagagctt tttcacataa aaatgaagat tttgaagatt taggagatgg atttagattt
      481 gaatttacta cacaaattct ttaccataat aataaagcct tgactttacc gagtaaagaa
      541 attaagcttt tgtctttatt acttaaaaat aaaaacaact ttttaagtac agagagaatt
      601 tttgaagaac tctgggatta tgatgaggag cctagtgagc taagtttaag ggcttatgtg
      661 aaaaatttac gtaaaatttt aggaaaagaa aaaattataa atcaaagagg caggggatat
      721 tgctatggct aaaaaagtca ttaggcaaat tttattaatc tacctaacaa ctacaggtat
      781 ttttttaacg attttttttg cattatggta tcaaaaatta tatgaagaat tagttgtttt
      841 aaagggtacc actttgagag aaaatcatag aaacattgtt ataagcatct taaattctcg
      901 ttttacccct atagatataa gtgcaaaaaa tattgctcaa agcacagcac taaaatttgc
      961 tatatttgat gctaaaaaga ttgtttttag taatatagat tttgatttaa gaaaggcaaa
     1021 gatagagctt aaaggtagag gtatttgtga taataaggtt tttttccttg ctcctatgag
     1081 tgcagatcat tattttttaa gacatgctag caatgaagaa gtaaatacta acgatggttt
     1141 gcaaatttta atacagggtg aagatgttgg caaagatctt ttttggatta gaacgaaagt
     1201 ttttagtttt gctattatgg ctttttgcat attgggttta atatcttata ttttagtaaa
     1261 aattgctcta aagcctttgg aggataaaat cagcatacta aatcgtttta ttaaagattc
     1321 aactcatgaa ctcaataccc cattaagtgt tattttgatg agtatagaac aacttgagca
     1381 tcaaaattta ggagataata ctaaatttac aaggattaag cttgctgcaa aaagtttgtc
     1441 tcaagtgtac tctgatcttg ttttttataa tttccctaat accttagaaa cagaaaaaca
     1501 aaaatttgat ttaagaatac tacttgaaga aagattggaa tattttaaag tattttttga
     1561 gcaaaaaaaa attacactaa agcttgattt aaatcaagca aatatttttg ctcctaaaag
     1621 tcaaatttct aaattgattg ataatcttat aagcaatgct attaaataca ataaaaaagg
     1681 tggagtaatt tctataattt taaaagccaa ttttttaagt attgcggata caggttgtgg
     1741 aatttcaaag tcaaatttaa atcatatttt tgatagatat acaagattta ataccgatca
     1801 aggaggattt ggtatagggc tttctttggt aaaaaaagtt tgtgatgata atgatattaa
     1861 gattatttgc gaatctgtag aaaatcaagg gagtgttttt aaattaaatt ggtaatcagc
     1921 aaggaaaatc cttgctgata agaggttaga gtagatatta catcattccg cccatgccac
     1981 ccattcctcc cataccgctc atatctggca tagtaggttt atcttcttta atttcactaa
     2041 ttgttgcttc tgtggttaaa agcatactag ctacagaaac tgcattgagt aaagctactc
     2101 tttctacttt aacaggatcg ataattccac tttcaagcat attaacatat tcaccttttg
     2161 cagcatcaaa tcctgtgttt tcatctttag cattttctac gctatttaca accacacctg
     2221 catcaaatcc tgcattttca gcaatttgtc ttaaaggtgc tcttaaagct ctttcaacga
     2281 tagctgcgcc aattgcttca tcaccctgta aatcaagttt gattttagct tttgctttga
     2341 taagcgctgc accaccaccg attactatac cttcttcaac tgctgcttta gtagcgctta
     2401 aagcatcgtc aacgcgatct tttttctctt tcatttcagt ttcagttgct gcacctactt
     2461 taataactgc aacaccacca cttaattttg caagtctttc ttgtaatttt tctctgtcat
     2521 aatctgaagt tgtttcagca atttgtgctt tgatttgatt gactctcgca tcaatatttg
     2581 ctttttcgcc tgcaccattt actatggttg tattgtcttt atcgatgatt acactagaag
     2641 cttgtccaag atcttgtata gtcgcacttt caagagttct tccaagttct tcagaaatca
     2701 cttctccacc tgttaaaatc gctatatctt caagcatagc ttttcttcta tcgccaaaac
     2761 ctggagcttt cactgctgaa atattaagaa caccgcgaag tttatttaca accaaagttg
     2821 caagcgcttc accttcaata tcttcagcga taattaaaag tggtttgcct gttttttgaa
     2881 tttgttctaa aaccggtaat aaatctttta aatttgtaat ttttttatca aaaagcagga
     2941 tataagggct tgaaagctct actgtcattt tttctgcatt agtgataaaa taagggctta
     3001 aataacctct gtcaaattgc ataccttcaa ctacatttaa ttcatcattg attgattttg
     3061 cctcttcaac agtgataaca ccatctttgc ccactttttc catagcatca gcgattaaat
     3121 ttccgatttt ttcatcagag ttggctgaaa ttgtagcaac ttgtgcaatt tcttttttat
     3181 cttttacttc gcgagaaagt tttttaagtt ctgctactat agcttcgcaa gctttatcca
     3241 taccgcgttt tacttcgata ggatttgcac ctgctgtgat atttcttaaa ccttctttga
     3301 aaattgcatg agctaaaacc gttgcagtag ttgttccatc gcctgcttga tcagctgttt
     3361 tactcgctac ttctcttacg agtgaagcac ccatattttc aagactatct ttaagctcta
     3421 cttctttagc aacacttacg ccatctttag taatgcttgg agcaccaaag cttttttgga
     3481 ttaaaacatt gcgtcctctt ggccccatag ttacttttac cgcgtcatta agttttttaa
     3541 cgccctcata aagtttattt cttgcttcat ctgaaaaaat aatttctttt gccatttttt
     3601 atccttattt tataaattat tttaaaattc ctaagatatc atctaaattt aaaactaaat
     3661 attcattatt atcaagttta atttctgttc caccgtattt agcaaacacg attttatcac
     3721 catttgcaat atcagtgatt tctttactta ctgctactac ttcacccatt aaaggctttt
     3781 ctttagcatt atctggtata attatgcctg aggctgttgt tttagtttct tctacgcgtt
     3841 tgactagaac acgctttcct aaaggttgaa aattcatttt tgtccatcct taaaaatatt
     3901 gattttag
//
LOCUS       DAQSLY010000125         3900 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.126, whole genome shotgun sequence.
ACCESSION   DAQSLY010000125 DAQSLY010000000
VERSION     DAQSLY010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3900
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.126"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..755
                     /locus_tag="R2H98_001577"
     CDS             <1..755
                     /locus_tag="R2H98_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024434.1"
                     /translation="LYEKLMYEKFTYNYDFPLAVKKEEYLTYPLLINSRFMSFDLSEF
                     IFGSLLCTGGLNYYPSIACATTSSEAREFALKRLLSYIILDEKRSAFKEDKINEGKYI
                     LNDKEFFEKNNIELRNCNIYKLEHFQRKEEYKTQHPVIKQHPILAYNDAIQILYEYAN
                     GIYNTTQDEKGKFIEDRQKARRLMENLEAIGQHNLEVMYRGINEEYVDNERNRRKEKE
                     DFNDINKIQDYSNKFIGRLATTIIMEDGLYIG"
     gene            767..2068
                     /locus_tag="R2H98_001578"
     CDS             767..2068
                     /locus_tag="R2H98_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024435.1"
                     /translation="MSSNKDIYEIYTSNGLILEVDKNTNQIIFDKRKDGREVGKYTQE
                     YSKALFEADRILRNSPYKDYQPQYLDPEFHTGEKSTLLEFKDWQSIYLKDPIKGSIAP
                     WTKAEKAYYKSLKTKKERYKYLVIRSGIRSVVIDIPYEAIGAVDEKGNVDPKYEKLYK
                     IVDDNKHNLRSSLFHNEWGMAAGILGDYKYLANDMFQNGFNARFIQATILYIQLSGGS
                     SILDKPHLLGAIYGYADIAVGSGLVGVHKNPLREQEIKTLAKTLKPDEFGMLPFIDEI
                     MGVDWVIDYNEYQISEDEFGSMYKALRSDIVEGKIKDPRDIDSTYESRREFDRYMDGY
                     SNGMINAYGYDIPNDRSEESAQLRIDSMILTAKLAALTPPQGYPNAPRYFTPEKLEWY
                     YKRHKLDKLLDPRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
     gene            2144..3430
                     /locus_tag="R2H98_001579"
     CDS             2144..3430
                     /locus_tag="R2H98_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024436.1"
                     /translation="MSETYEIYTPNGLIMDVYKDTNKIIFSGSAKPTGDYTEEYSKAL
                     FEADHILRNSPYKDYKPQYLDPNFYTGQKSTLVEFKEWQSIYLKDPIKGAIAPWTKAE
                     KAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGNLINEEYAYIYDEVNN
                     NKETLKSSLFRQEWGIAAGILGKPEYFVRSKNHGFNARMIQCFILYIQLTGGGYEELG
                     IKRGIYNYADNLLEIGIGMAGIHKNPLRAKLVKDLAKTIQPDEFGMLPFLDEIMGVDW
                     VIDLNKYDFAYDEEGRIIWALYNDIEKGKLKDPRDIDSTPESRNKFDDAMDGYRNGMK
                     TNFDVDTPNDWSEQQATLFKDTLVLSAKLAALTPPQGYPNAPYYFTPERLEWIYKRGY
                     LDKLLDPRIPAIYRYNFPQELRAKILAYAKEHNIKE"
     gene            3484..>3900
                     /locus_tag="R2H98_001580"
     CDS             3484..>3900
                     /locus_tag="R2H98_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024437.1"
                     /translation="MQKILQIDLEKRKALENFKNLALLGLGGTMLLNLKEQALDFSQE
                     LTYINTYDKYLNLKLDSFYIPSTLLSLLQLTQKSKEAFYINVLINSDTHYKNPLLQYA
                     ITQKQEQENIVYALKNNENINASFANLNALKLALEEK"
BASE COUNT         1577 a          474 c          646 g         1203 t
ORIGIN      
        1 ttttatatga aaaactaatg tatgaaaaat ttacttacaa ttatgatttt cctttagctg
       61 taaaaaaaga agaatactta acctatcctt tattgataaa ttctagattt atgagttttg
      121 atttatctga gtttattttt ggttctttat tatgcacggg tgggcttaat tattatccta
      181 gtattgcttg tgctacaact tcaagtgaag ctagagaatt tgccttaaaa agacttttat
      241 cttatattat tttagatgag aaaagaagtg cttttaagga agataaaatc aatgaaggca
      301 aatatatctt aaatgataag gaattttttg aaaaaaacaa tatagaactt agaaattgta
      361 atatatataa gctagagcat tttcaaagaa aagaagaata taaaacacaa cacccagtga
      421 taaaacaaca ccctatctta gcttataatg atgctataca aattttatat gaatatgcaa
      481 atgggattta taataccact caagatgaaa aaggtaagtt catagaagat aggcaaaagg
      541 caagaagatt gatggaaaat ttagaagcca taggacaaca taatttagaa gtgatgtata
      601 gagggataaa tgaagaatat gttgataatg aaagaaatag aagaaaagaa aaagaagatt
      661 ttaatgatat taataaaata caagattatt ctaataaatt cataggcaga ctagctacaa
      721 ctataatcat ggaagatggt ttatatatag gatgaaagga taaataatga gcagtaataa
      781 agatatttac gagatttata cttctaatgg acttatatta gaagttgata aaaatacaaa
      841 tcaaattata tttgataaaa gaaaagatgg gcgtgaagta ggcaaataca cccaagaata
      901 ttccaaagct ttgtttgaag ctgatcgtat attaagaaac tccccctaca aagactatca
      961 accccaatac ctagatcctg aatttcacac aggggagaaa tctactttac ttgaatttaa
     1021 agattggcaa agtatttatt taaaagatcc tatcaaagga agcatagctc cttggactaa
     1081 agcagaaaaa gcttattata aatctttaaa aactaaaaaa gaaagatata aatatttagt
     1141 tataagaagt ggtataagaa gtgttgttat agatatacct tatgaagcta taggagctgt
     1201 agatgaaaaa ggaaatgtag atcctaaata tgaaaaatta tataaaatag tagatgataa
     1261 taaacataat ctaagatcaa gtttatttca taatgaatgg ggtatggcag caggaatatt
     1321 aggtgattat aaatacctag ctaatgatat gtttcaaaat ggttttaatg caagatttat
     1381 acaagctact atactttata tacaactaag tggaggaagt agtatattag ataaacctca
     1441 tttattaggt gctatttatg gttatgcaga tattgctgta ggaagtggtt tagtaggagt
     1501 gcataaaaat cctttaagag aacaagagat taaaacctta gctaagactt taaaacctga
     1561 tgaatttggt atgcttcctt ttatagatga gattatggga gtagattggg tgattgatta
     1621 taacgaatat caaatttctg aagatgaatt tggaagtatg tataaagcct taagaagtga
     1681 tatagttgaa ggtaagataa aagatccaag ggatatagat tctacttatg aaagcagaag
     1741 agaatttgat cgttatatgg atgggtattc taatggtatg attaatgctt atggttatga
     1801 tattccaaat gatcggagtg aagaaagtgc acaattaaga atagattcta tgatattaac
     1861 tgccaaacta gcagccctaa ctcctcctca aggctatcct aatgcaccaa gatattttac
     1921 ccctgaaaaa ctagaatggt attataaaag acataagctt gataaacttc ttgatccaag
     1981 aattcctgct atttatagat ataattttcc gcaagaactt cgagctaaga taagagctta
     2041 tgctaaagag cataatataa aagagtaaga atgaatttca ttagctacta ctatcattat
     2101 gaaaaatggt ttatatatgg gttaaattaa gaaaggatag ataatgagcg aaacttatga
     2161 gatttataca cccaatgggt taataatgga tgtatataaa gacactaata aaatcatttt
     2221 ttcaggaagt gctaagccaa caggcgatta taccgaagaa tattccaaag ccctttttga
     2281 agccgatcac atattaagaa actcccccta caaagactat aaaccccaat acctagatcc
     2341 taacttttat acaggacaaa aatccactct agttgaattt aaagaatggc aaagcatata
     2401 tttaaaagat cctataaaag gagctatagc tccttggact aaagcagaaa aagcttatta
     2461 taaatcttta aaaactaaaa gagaaagata taaatattta gcaataagaa gtggattaag
     2521 atctgtggtt atagatatac cctatgatgc ttatgctaat gtagatgaaa aaggaaattt
     2581 aatcaatgaa gaatacgcct atatttatga tgaagttaac aataataaag aaaccttaaa
     2641 atcttctctt tttagacaag aatggggtat agcagcagga atactaggaa aacctgaata
     2701 ttttgtgcgt tctaaaaatc atggctttaa tgccagaatg atacaatgtt ttattttata
     2761 tattcaactc acaggtggag gatatgaaga attaggtata aaaagaggaa tttataatta
     2821 tgccgataat cttttagaaa taggtatagg tatggcaggg atacataaaa atcctttaag
     2881 ggctaaatta gtaaaagatt tagctaaaac tatacagcct gatgaatttg gtatgcttcc
     2941 ttttttagat gagattatgg gagtagattg ggtgattgat ttaaataaat atgattttgc
     3001 ctatgatgaa gaaggcagga tcatttgggc tttatataat gatattgaaa aaggcaaatt
     3061 aaaagatcca agagatatag attctactcc tgaaagtaga aataaatttg atgatgctat
     3121 ggatggatat agaaatggga tgaaaactaa ctttgatgta gatactccaa atgattggag
     3181 tgaacaacaa gccactttat tcaaagatac cctagtatta agcgctaaac tagcagcctt
     3241 aactcctcct caaggctatc ctaatgcccc ttattatttt acccctgaaa gattggaatg
     3301 gatttataaa agaggatatt tagacaaact ccttgatcca agaattcctg ctatttatag
     3361 atataatttt ccgcaagaac ttcgagctaa aatactagct tatgctaaag aacataatat
     3421 aaaagagtaa tttaatcaaa ataaaaaaat atttaaagta aaataaaaac aaaaggaaaa
     3481 acaatgcaaa aaatacttca aatcgattta gaaaaaagaa aagctttaga gaatttcaaa
     3541 aatctagctt tattaggatt aggtggaaca atgcttttaa atttaaaaga acaagctttg
     3601 gattttagtc aagaattaac ttatataaat acttatgata agtatttaaa tttaaagctt
     3661 gattcttttt atatcccttc tacactttta tctttgcttc aattaactca aaaaagcaaa
     3721 gaagcttttt atatcaatgt tttaatcaat agcgatacac attataaaaa tcctttatta
     3781 caatatgcta ttacccaaaa acaagaacaa gaaaatatcg tttatgcttt aaaaaataat
     3841 gaaaatatta atgcttcttt tgcaaatctt aatgctttaa aattagcctt agaagaaaag
//
LOCUS       DAQSLY010000126         3867 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.127, whole genome shotgun sequence.
ACCESSION   DAQSLY010000126 DAQSLY010000000
VERSION     DAQSLY010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3867
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.127"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            80..3850
                     /locus_tag="R2H98_001581"
     CDS             80..3850
                     /locus_tag="R2H98_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEE9024438.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLG
                     NVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDTKDISELRKSLRKE
                     DKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILIT
                     GRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIE
                     LLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYPNIKERINKYK
                     RIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKGFNDKCEKYSKKYGNF
                     LAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEI
                     LDDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLK
                     DNGVLSYITSNKYTRAGYGEALREFLLKNVKVLEYTDLNGIKVFDSATVDTSILCFEK
                     SKSKDNKFKYLALSNEILKTCAYDIGLYKDFAEFSQNSLSKESFTFSDENTSALKAKI
                     ERIGTPLKEWQGLNIYRGILTGYNEAFIITTEKRNEILANCKDEAEKERTAKLIRKML
                     RGRDIKRYSYEWAGLWVIFIPWHFPNVEKPKTMLENEQDLKEQYPSLYKHLLSHKERL
                     SKRNKEETGIRYEWYCLQRWGANYYQEFEREKIGWQRITQEPSFILEKEYILLDSMAF
                     MVANSKNELKYLLGFLNSSLIFYYFKNIGHLYSDKGFLLSNQYVEKFPILKIHSKNQK
                     IADELINLVDEILKAKEQDKNANTQELENKINSLVYKLYNLTEEDIKIIEGK"
BASE COUNT         1545 a          548 c          608 g         1166 t
ORIGIN      
        1 tgatatatta aattcttaaa aaattttata taaaagtaaa atttgataaa atacaaaata
       61 ttttttataa aggttaaaaa tgcatttcac tttgctaaat gaaaaagatt ttttcaaccc
      121 atactaccgc aaaaagcaaa tcatgcaaaa tgaatttgat atatttaaca aggctttaat
      181 gcaatatcta gaaagacttg aaagttcgca aagtgaaaat gaagattatc ttgtagctaa
      241 tgcacttagt ccatttttaa ccatgttaaa tttcaaaacc cacatcaaaa ccaagcaaaa
      301 aggcaaaagt gagattgact tatccatctc taaagatgag tttagtaaag acttagaagt
      361 tcttattgag gctaaaaagc caaattcaaa agaatttatc actcatacaa aggtaaattc
      421 taaagcctta cacgagacta ttttatatta ttttagaaat agagagtata gttttagctt
      481 aaaatttatt atcatcacag atttttataa attttacatt tttaaaatta gtgagtttga
      541 agagcttttt tataaaaatc caagttttaa aaaacttttt gaagaatttt gtaatccaaa
      601 ttcacttttc aaaggtaata ctgaagaatt ctataaagaa gtagccaaac tcatagaaaa
      661 ttccaaagaa aacttaaaag gctttttgat tgacttgaca tttttaaaag acaaacaaaa
      721 atcaaatttt aaaaacctag caagtattta taaaactttt catagagact ttttgctaag
      781 tgagtttaac cccaacgatg caaattcact caacaacgct ttttacaaag agcttttata
      841 tatcttaggg ctttgtgaga gcaaacaaaa ctcaaaactc atcatcgcaa aaagtgaaga
      901 aagcaaagaa gagcaaggca ctttctacac cgctataaat tctaagctta aagaagaaaa
      961 ttttgaaacc atcttaaaac ttttgatctt atggcttaat cgcattttgt ttttaaagct
     1021 tatagagtca aatttggtgc gttttaatga tgataaaaat ttgaaatttt taaatttcaa
     1081 aaaaatccct gattttgaca agcttagcga acttttcttt gaagtcttag ccaaagaaaa
     1141 aagcacgaga aagaaaagcg aatttgccta tctgccttat ctaaattctt ctttgtttga
     1201 aaaacaaagc atagaaaaca cacttgaaat ttcaagctta agcaatgact taaagctttt
     1261 ttactataaa aacactgtgc taaaagatga taaatgcaag gctaaaaaag gacaagtggg
     1321 gcttttagaa tacttgtttg aatttttgga tagctttgat tttggtagtg atgatgagca
     1381 aagcgaaatt ttaagccaaa aagaactcat aagctcaagc gttttaggaa atgtatttga
     1441 aaaactcaat ggctacaaag aaggaagctt ttacacgcca agctttatca cttcttatat
     1501 gtgtaaagaa agcatcacaa aagttgtgct tgataaattc aatgctcaat ttgatcttga
     1561 tactaaagat ataagcgaac taagaaagtc tttaagaaaa gaagataaaa aagcacaaaa
     1621 agagctttta aactctataa aaatttgcga tcctgcggtg ggaagtgggc attttttggt
     1681 ttctgcttta aatgttatgt taagcattta tgatgagcta aatctttttg atgaagaatt
     1741 ttacctagaa gtgcaaaacg atgaaattct catcacgggt agaaaaggcg agtttataga
     1801 gtataaacgc ccaagtacgc ctaaagataa agcccatctt atccagcaag aactttttca
     1861 cactaaaaaa gacatcatag aaaataacct ttttggagtc gatatcaacc ctaactcatg
     1921 cgagatcacg aagctaaggc tttggataga gcttttaaaa catagttttt atcaaagctt
     1981 tgatgatgag aattatcacg atcttaaaac cctgccaaat atcgatataa acataaaatg
     2041 cggaaattct ttggtgtctt actttgaaac aggcaaaagc ctaaaccact atcctaacat
     2101 caaagaacgc attaacaaat acaaacgcat agtaaaagac tataaagaag gcttttacac
     2161 agataaaagc cacatcaacc aagagataaa aaatctcaaa atttctttta aaaatttctg
     2221 ctttgcggat aaatttaaaa aagaaatgaa aggctttaac gataaatgtg aaaaatactc
     2281 taaaaaatac ggaaatttct tagccgtaga tgatgaaaat ttgaaattct ttgttagtgc
     2341 gaatttgact ctttttgact ttgatgaaaa agaagccaca aaagaatttg caaatcttaa
     2401 aaaagaatac gacaatatct ttaacctaga aagcaatcat ccttttgaat ggcgttttga
     2461 attccctgaa attttggacg atgatggaaa tttcaaaggc tttgatctca tcatcggcaa
     2521 tccaccttat ataagacaag aggaacttaa agaactcaag ccccatttag ctaaaaatta
     2581 taaggtttat aaaggcacga gcgatattta tacttatttt tatgaactag gatttaatgt
     2641 tttaaaagat aatggggtat tgagctatat cacttctaac aaatacacgc gtgcaggata
     2701 tggggaagct ttgcgtgaat ttttgcttaa aaatgttaag gttttagaat acactgattt
     2761 aaacggcata aaagtttttg atagtgctac ggtggatact tccatacttt gttttgaaaa
     2821 atcaaaaagc aaagataata aattcaaata ccttgcccta agcaatgaaa ttttaaaaac
     2881 ttgtgcttat gacattggct tatataagga ctttgcagaa ttttcgcaaa attctttaag
     2941 caaagaaagc ttcactttta gcgatgagaa tactagtgct ttaaaggcca agatagaacg
     3001 cataggaact ccacttaaag aatggcaagg acttaatata tatcgtggaa ttttaacagg
     3061 ctataatgaa gcctttatca tcactactga aaaaagaaat gaaattttag caaattgcaa
     3121 agatgaagcc gaaaaagaac gcaccgccaa actcatacgc aaaatgctac gcggacgcga
     3181 tataaaaaga tatagttacg agtgggcggg actttgggtg atatttatac cttggcattt
     3241 tccaaatgtt gaaaaaccaa agacaatgct agaaaatgaa caagatttaa aagaacaata
     3301 tccgagctta tataagcact tgttatctca taaagaaaga ttatctaaaa gaaataaaga
     3361 agaaacagga attcgctatg aatggtattg tttgcaaaga tggggagcaa attattatca
     3421 agaatttgaa agggaaaaga taggttggca aagaataaca caagagccaa gttttatttt
     3481 agaaaaagaa tatattttat tagattctat ggcttttatg gtggcaaatt ctaaaaatga
     3541 actcaagtat cttttagggt ttttaaattc tagtttgata ttttattatt ttaaaaatat
     3601 aggacatttg tattctgaca aaggcttttt attatcaaat caatatgtag aaaagtttcc
     3661 tatactaaaa atacattcta aaaatcaaaa aatagccgat gagcttataa atttagtcga
     3721 tgaaatttta aaagccaaag aacaagacaa aaacgcaaat acccaagagt tagaaaataa
     3781 aatcaattct ttggtttata aactctataa cttaaccgaa gaagatataa aaatcataga
     3841 agggaaataa tggaagaaaa aataaaa
//
LOCUS       DAQSLY010000127         3812 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.128, whole genome shotgun sequence.
ACCESSION   DAQSLY010000127 DAQSLY010000000
VERSION     DAQSLY010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.128"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(5..1615)
                     /locus_tag="R2H98_001582"
     CDS             complement(5..1615)
                     /locus_tag="R2H98_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEE9024439.1"
                     /translation="MINKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLAKVPVEVKKDNTLWVFFILLVFIIAL
                     FISLGYFARKKELAKYPISNKNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEVKM
                     ELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSS
                     FVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLLTQ
                     MDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKDKN
                     NNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKKKI
                     LSFNDEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRIKV
                     YLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLNSM
                     KDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(1619..2869)
                     /gene="mtaB"
                     /locus_tag="R2H98_001583"
     CDS             complement(1619..2869)
                     /gene="mtaB"
                     /locus_tag="R2H98_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEE9024440.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYKFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     ITKEWIFISEYEVQEKSNFANLKG"
     gene            complement(2866..>3812)
                     /locus_tag="R2H98_001584"
     CDS             complement(2866..>3812)
                     /locus_tag="R2H98_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEE9024441.1"
                     /translation="RVSAEIKVQSLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERY
                     YTATKIINFININIIFLILLFAYIENITYLVTILGFASAGLAIAMKDMFMSMLGWCVI
                     IFGGSFRVGDRVKVFQNDTTYIGDIIDISFLRITLYEELTLETYNKNRRSGRIIFIPN
                     NYVFTNLLANYTHHGMKTVLDGIDISVTFDSNLDKAQEIVENIVTRHAKGYTELARKN
                     IARLQHEYSIKNPKVEPRFFMFFEHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNK
                     HKDIKIAYPSQNLYLGNLNQNHFEQHHENMYFHARNKD"
BASE COUNT         1272 a          725 c          412 g         1403 t
ORIGIN      
        1 atcatcaaac ctgcattata tctttaacat cgtcatattc tatcttttct ttttcaagca
       61 aaagctctga taattttaaa attttatcct tcatagaatt taaaaattca tccatttctt
      121 ttttttgttc acttaaattt gactctttca acatatcaaa actcaacata taatcaagca
      181 attctttaat ctttaaaaaa tcatcttgcg agttagtata actttcattg taaatcaatc
      241 tcatggctct agaaccagcc aaataaactt ttatacgatt gataagctct gattttgatc
      301 ttatattatg ctcatattct ttaaaacgat cttcaatgag agtgattttt tcaaatccta
      361 tgtcaaaata atacgcactc aaagcttttg cagcctgata agtggcttga attttcttct
      421 cttcatcatt aaaacttaaa atctttttct tgcctaaaag aactttattt aatacagcat
      481 aaaaatcact ttcctcaact aaagcactat ttcttcttaa agcattaatt gccgcttcat
      541 tgaccaaagt ttcaagccct gctccactaa aacctacgct tgctttggcg attttattta
      601 aattgacatt attgttttta tctttcatat aaatttctaa aattttaagt ctatccttaa
      661 aatcaggcaa agataaaaaa attctcctat caaaacgccc cgaacgcaat aaagcaggat
      721 ccataagttc gattttattt gtcgcagcta taactataac cccactattg tcctcaaaac
      781 catccatttg agttaaaagt tgatttaaag tactatctct ttcaacattt gacatttctc
      841 ctcttgcctt acctacagca tctatttcat caataaaaac tatgctaggc gccatcattt
      901 tagcttttga aaaaagctct ctaactcttt ttgcacccat acctacataa atttcaacaa
      961 aacttgaacc gctttgataa aaaaatggca cccctgcttc tcctgcaact gcttttgcta
     1021 tcaatgtttt tcctacacca ggtgggccta ccattaaaac accttttggc atttttacac
     1081 caaattcttt atatttttta ggattttgta aaaaatccac aagttcgctt aactccattt
     1141 taacttcatc aacacctgct acatcattaa aagtaatatt tgaaatcaca ggttttatat
     1201 gagaactttc taaatttata tttgaatttt gagcttgagt gtgattttta tttgatattg
     1261 gatatttagc taactctttt ttacgggcaa aataaccaag acttataaaa agtgcgataa
     1321 taaaaacaag taaaataaaa aacacccaaa gcgtgttatc ttttttaacc tctacaggaa
     1381 cttttgctaa aagtgttttt atatctatgc catcttttat aattacgtaa ttttcacctt
     1441 ctgccttaag ccaaatttcg tctttatcaa tcacagcttt ttggattaaa ttttggctta
     1501 atagactttg ataaagattt tcatctatat atttaggttc atttttaaaa tataaaattc
     1561 ccaaaagcat acataaaacc ataaaagatg ctaaaattat ctttttattt atcattatct
     1621 agccttttaa atttgcaaag ttagactttt cttgtacttc atattcagat ataaagatcc
     1681 attctttagt tatatcttta tcacttttaa ttttgatctt gttaaaaaac tgatcataac
     1741 cctcaaaaaa accatctttt tgattttcta ccaaaacttc aagtgaaact tgattttttt
     1801 tcctaaattt ataattattt ttttctacta tggattttaa agtgtttagc ctttctttag
     1861 ctaaagttcc atttatcaca tctttcatgg tagcagaatg cgtgttgttt ctagggctaa
     1921 aaataaaagc atggatatga gtgagtggaa attctttaaa atttcttaaa gcttcttgcc
     1981 atagctcttc actctcgcct ggatgagcta ctataaaatc cgtccctaaa gcatatcctt
     2041 tacttgctat agtattaaaa agctttaaat cattatccgt atgtgatctt cttctcatta
     2101 tacgaagcat tttttcactt gtatgttgca atgcaatatg taaatgcctt tcaagccaag
     2161 cttcatctaa gatttctaaa aaactttcat caagctgtgc aggttctaaa ctacctagcc
     2221 ttatgcgttt tatacctaaa atttgtccca ttttttgcaa aagcttgcct agggttgtgc
     2281 catttttaag cccatatgaa cctatattag tccctgttaa aacaatttca ctataaccat
     2341 tagctcccaa aatttcaacc tgttttaaaa gagctttttc atccacgctt cttgattttc
     2401 ccctcacgct aggaataata caataagaac aagcaaaatc acaaccttct tgaattttca
     2461 caaaagcttt ggtatgattt tcatactcac aaactatatc tttatcaata aaatttaaat
     2521 ttccaagttc ataaaaactt gtctttgctc ctaaaaattc attgatttta tctttatttg
     2581 acgctccaag cactccaaaa acttgctttt tatctaaaag ctccttacct ttgcttacag
     2641 caccacaacc tgtaagtata actttaatgc cttttttttg catggtattt acataagact
     2701 ttatcccgct atcagctcca tttgtaaccg tgcaagaatt tacaacgata atttgtgctt
     2761 tattctcatc atttataatc tcataatctt ttacataact ttttaaaagc tctgtatcat
     2821 aaatatttgt gcgacaccca aaggttttaa aaaaaacttt ttctttcaat ccttattcct
     2881 tgcatgaaaa tacatatttt catgatgttg ttcaaaatga ttttgattta aatttcctaa
     2941 atataaattt tgcgatggat aagcaatttt tatatcttta tgcttattaa attcttttat
     3001 aatctctttg ctaatcgtac ttcttaatac caaagccgca taagcattag tcatatacca
     3061 tgcagaaatt ctcattcccc aatgttcaaa aaacataaaa aaccttggct ccactttagg
     3121 atttttaata ctatattcat gttgtaaacg agctatattt tttctagcaa gctcagtata
     3181 acctttggca tggcgtgtaa caatattttc cacaatttct tgagctttgt caagattgct
     3241 atcaaaagta acacttatat caatgccatc aagcacggtt ttcataccat gatgggtata
     3301 attagcaagc aaatttgtaa aaacatagtt attaggaata aatataatac gcccactacg
     3361 acgattttta ttataagttt caagcgtaag ctcttcataa agagtaatgc gtaaaaaaga
     3421 aatgtctata atatctccta tataggtagt atcattttga aaaactttta cacgatcccc
     3481 tactctaaaa cttccgccaa aaataatcac acaccatcca agcatagaca taaacatatc
     3541 tttcatagca atagctaagc ccgcagaggc aaaaccaagt atagttacaa gataagtaat
     3601 attttctata taagcaaaga gcaaaataag aaaaataata tttatattaa taaaattaat
     3661 aatcttcgta gcagtataat atctttcact atccttaata tattttttag caataaattt
     3721 caacataaaa gctatagcta taacaataac aatagcaaca agtatattta cagcccttaa
     3781 gctttgaact ttaatctcag cacttactcg ag
//
LOCUS       DAQSLY010000128         3793 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.129, whole genome shotgun sequence.
ACCESSION   DAQSLY010000128 DAQSLY010000000
VERSION     DAQSLY010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.129"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..176)
                     /locus_tag="R2H98_001585"
     CDS             complement(<1..176)
                     /locus_tag="R2H98_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024442.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNK"
     gene            complement(160..1206)
                     /locus_tag="R2H98_001586"
     CDS             complement(160..1206)
                     /locus_tag="R2H98_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEE9024443.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            complement(1215..3389)
                     /gene="flhA"
                     /locus_tag="R2H98_001587"
     CDS             complement(1215..3389)
                     /gene="flhA"
                     /locus_tag="R2H98_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEE9024444.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVASVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(3376..3786)
                     /locus_tag="R2H98_001588"
     CDS             complement(3376..3786)
                     /locus_tag="R2H98_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEE9024445.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
BASE COUNT         1274 a          685 c          494 g         1340 t
ORIGIN      
        1 tctttgttgg aattttcgag tacattatct atattatcaa tataagcttc tattgcattt
       61 tctaattttt ctcttttaac tccagcgtat aaaagcatag cttctaaaac tatgctaagc
      121 tcatattgta aatcttctaa ttcatttttt aaggttttat tattgttttg attcattgtt
      181 ttccttttta agttctttgc ttttaattaa atcaataatt tgagccttaa tataattata
      241 atttgctcca tctttaaatg tcgcaaaaag tccaccacta gcatttttat gtccgccacc
      301 acctactaaa tttttagcca ttaaacttac atctattttt ccatttgcac gaaaacttaa
      361 ggtttttcta gaactaacat caataaaaaa gtcataatca ggatttttta ctaaaaaatc
      421 atttccaata acagaagtat tgcctatatt tgaagttaag atgcctttat ggccttcata
      481 ttctatgcta aaattttctt ttagctcact tagtttttca actacaaaat aagaaattaa
      541 attagaaaga gtatcatcat tttttctggc aaaataatcc ttttttataa aatgagtagc
      601 attatcgagt aaaatatttg cattttcttt tcctataaat ttccaagcct tatcaagcaa
      661 gaaaaacata taatcaattt gagattcttt aaacattaca cgatttattt cttttgcatt
      721 ggcaatcaag cctaaaaaaa cctttccaag ttcaaaattt tcatcctcgc ttagccaaat
      781 atcaacagca ttaaccacat caacaaattt tgaaagttct aaaacaggag tacagatttt
      841 agagaaaaaa tcataaacga ttttagttgc acatctttta gaatcaagta aataccaaga
      901 atatttttga gcgcattctt cgccactttg atgatgatca agaagaaaaa ttttagtatt
      961 tttctctttg caaatttttt caaattcttc gcattgattt aaatttaaat ttaaatctgt
     1021 tattagaata atagcttttc cgaaattttc atctttttct atatcgccta taatagagtt
     1081 aaaattttca ttaatttctt tgccataatt agaattataa aatttcacat ttttaaaata
     1141 aaaatttact ataaattgac aagcatagcc atcaagatct gtatgtgaaa gatgataaat
     1201 tttcattata ttccttaaag ttctatccta ataataccct cggtattaaa atttgtattt
     1261 tctgcaattt ctgcaaaact taacactact atattaatgc taaaattata acaaatatca
     1321 gcaatgaatt ttctaagctg cggttcaacg caaagtataa aaggcttgat acgaccattt
     1381 gctactgcgg caacttcagc ccttagagta tctactaaag tacctgtttg agctacactt
     1441 aaaggcaagt gataacttcc atctctaaat tgtacatttt ccattaaaac cgcagaacta
     1501 gcagagtcta agataaaaat atccaaattt cctttatcat ctaaatacat atttgtaatc
     1561 atcctagcca aggacgccct tacatgttca ataatcatat caaaactctt gcttacttct
     1621 gctatatcgc ttacagattc taaaatagta agcatatctt taattggtat gtgatgctta
     1681 agcaagtctt tgagaatttt ttgaataaga cttacagatg caacacctaa agcaccttct
     1741 acgatgattg gataatcatt tttaacctta tcaagaagat tttgtacctc ttggcgtgtg
     1801 agaagttcgc ttgcgtgcgc tttgataagt tcgctcatat gtgttgaaat aacacttgca
     1861 ggatctatta ctatatagcc atttaatgtt gcttcatctt ttaaattcgc atcaatccaa
     1921 agtgcatcag agttaaaagc gggttctttt gtagcaatcc cttctatctc ttctgtgata
     1981 aaaccactat ccatggctaa atatttatcc ggataaattt cagcacttgc tatagacacg
     2041 cccttgagtt taaaactata ctcatttggt ttaagtctta aattatctct tattcttatt
     2101 tttggcatta aaaatcctaa actttcagca atacttcttc tcattgagcg aattctttct
     2161 gtaagttcgt tttcagcaag cttaataagt ccgtatccaa gttcaagttc taaaatttca
     2221 actttgagta tatcgttaat cttgtgctct tcttctttga gaatttcttc ttcgcttttc
     2281 ttagcaggcg ctgccgttgt cccacctgct ccactttgag atgcaactgc ggcacttggt
     2341 ttgctttttt taactgtagt tatatcaatt ttaccttcct taacctgctt ggtaagatag
     2401 ccaaggctta aaaatactaa agccataaag cccaaggata aagttggcaa accaggcact
     2461 aacgcaaaga taaaaagtac aaaacctact attaaaagcg tgcgatattc gcttaaaagt
     2521 tgagttaaag ttccttctgc aaaattttcc tcatctttgc ttgcacgagt gataattata
     2581 gcggttgcag tagaagtaat aagccctgga atttgagata caagtccatc acctatggtt
     2641 aaaatagtat aggtagaagc agcatcgctt aaagccatat cgtgctgaaa agatcctatt
     2701 aaaaaaccac ctatgatatt tataatagtt atgataattc ctgcaacagc atctcctttg
     2761 ataaatttag aagaaccatc cattgcacca tagaagtttg cctcagcaat aacttcttga
     2821 cgtcttgctc tagcggtttg ttcatcaata agtcctgcat ttaaatccgc atcaatagcc
     2881 atttgtttac ccggcatcgc atcaagtgta aatcttgctt gtacttcaga aacccttgta
     2941 ctaccttttg ttacaaccat gaaattaatc aatactaaaa tacaaaatac aatcacgcca
     3001 atgaccatat ttccaccaac aacaaattct ccaaatgctg ctataatctc actcacagct
     3061 tcagggccgt tttgcccttc gcttaaaatc atccttgtgg tagctatatt taatgaaagc
     3121 ctaaataaag tgataatcaa gattaaagtt ggaaaagttg ttaaatctgt cggtttgggt
     3181 atataaatag aaattaaaat aattaatacc gataaagcta tgcttaaagc caagaaaaag
     3241 tccaaaatag ggcttggtaa aggaactata ataatagcta aaatacaaac taaaaaacca
     3301 acaatagtca agcttttagc ttttaaaaca ggagcgatta aaggccccaa gaaaggaaaa
     3361 actaaatcga ctattttatt ttttgccatt atttttcata atatcttcta aagtaataga
     3421 atctaaaaat tcatctactt tattttgtaa atttactaac ataggcatta aggtgcaatt
     3481 ttcttcttta ttatttggac aagtgccacc actgcattca aatacactga tatccttttt
     3541 ttcagcacta ttaacaattt cttttatagt atattgactt ggttctttga ttaaaacaaa
     3601 accacctttt gcccctttaa aggattttaa caagccatct ttagctaaag tttgtaaaat
     3661 tttagctaaa aaacttttag gaatatcaag ctctaaagct aaagaatcta catcttgagg
     3721 tgtttctttt tgagaaatat aaattaaaga aagtaaagcg tattcgctag ctttggtaaa
     3781 tagcacagat tct
//
LOCUS       DAQSLY010000129         3785 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.130, whole genome shotgun sequence.
ACCESSION   DAQSLY010000129 DAQSLY010000000
VERSION     DAQSLY010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3785
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.130"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(65..629)
                     /locus_tag="R2H98_001589"
                     /pseudo
     CDS             complement(65..629)
                     /locus_tag="R2H98_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            1111..1968
                     /gene="cheP"
                     /locus_tag="R2H98_001590"
     CDS             1111..1968
                     /gene="cheP"
                     /locus_tag="R2H98_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEE9024446.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            1996..2475
                     /gene="cheQ"
                     /locus_tag="R2H98_001591"
     CDS             1996..2475
                     /gene="cheQ"
                     /locus_tag="R2H98_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEE9024447.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(2444..3754)
                     /locus_tag="R2H98_001592"
     CDS             complement(2444..3754)
                     /locus_tag="R2H98_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9024448.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
BASE COUNT         1383 a          551 c          519 g         1332 t
ORIGIN      
        1 taactaaata atgttttatt tgggttgatt tccatagggg aaataagata gtcttctcca
       61 atttttaaag caaaagtata ttcttgcatt ttatttttaa gttcttcaaa agtacagtta
      121 aaataattac ataaagcttc aaccgcgttg atggattgaa aggtttttta ttaataaatt
      181 cgctacggtt ttatcatata agcttacatc aagtatggta aaggtaatgt tgctttgagg
      241 attgaaattt tgagacttca ttaaattaaa acggtattta ggtttaaatt gaacatgtat
      301 gcttaaagct tgatttttaa tatttctctg ttataaaata taaatactcc gctaaagtcc
      361 atgtttccgc tagacccacc ccctactaaa gcacaaggat aggggttgtg tttgtacaaa
      421 agttctaaaa gagaactttc gctttgactt aaaccatcat aaattaaata atgcaaagta
      481 tttatgcagt gtgcttcaaa aggtatattt ataaataaaa cttctttttc tatcagtttt
      541 tttctttctg tataatcttt tatatcacta aaaagcttga ttttatttgt gcaaagattt
      601 tctatcatat cttcactaaa aagtatcaag cttattcctt ggatattttg tttataagga
      661 ctgttttcaa tgtttgagtt agaatcaagg ttgcataata aatcagtagc actgcttaag
      721 atgatatcac attgctcatt tatagaattt tgaatcttat ttcctatgat cgctagatta
      781 agttgattga cacaaagcct ataattaatt ttggcttgat gtttattttt tttaattttt
      841 cttcaagttc attttattga agatatgtag cttctaaaac ttttttactt cttctttttt
      901 tgttgagctt ttatttttaa aattaaaaaa acatcaattt aactccatta aaactatttt
      961 ttaattacta gttaactaaa tcaagacacc ataaattcgg catttatttg taatttttat
     1021 tataccttaa gtcataaaaa atgcaataag taaattaaaa tttagatata attgcaaatt
     1081 ataataatat taattaagga taaattaaat atgattggag atatgaatga gcttttatta
     1141 aaaagcgttg aagtattgcc acctttacct gatactgtaa gtaagttaag aaaatatgtg
     1201 agcgaggcta attcaaatat agaaactatg aaagttgctg aaatcatttc aagcgatccg
     1261 ttgatgacgg ctaagctttt gcaattagca aattctcctt attatggttt tacaagagaa
     1321 attacaacca taaatcaagt gattacttta ttaggtgttg gtaatatcat caatatagtt
     1381 atggctgact ccattagaga taattttaaa atagacgttt caccttatgg tttaaatact
     1441 caaaattttt taaaaacgtg caatgaagag gcaactttta tcgcaaattg gcttaatgat
     1501 gaagataaaa aactttctca tcttttagtt ccttgtgcaa tgcttttaag gcttggtatt
     1561 gttatttttt caaattttct tatacaaaat cataaggata aggatttttt agctttttta
     1621 aataaaaatg aaaatcttgc tttagcggag aatgaatttt taggcgtaga tcatatttct
     1681 ttcttgggat ttttgttaca tcgttggaat tttgatgatg ttttgattga aagtatatgt
     1741 tttgttcgca ctcctcatgc tgctcgcgaa aaagtgaaaa aatccgctta tgctttagca
     1801 ataacagatc atctttttgc tccgcatgat ggttcttctc catttaacgc aaaagctgca
     1861 gttgctttac ttaaagaggc aaaaactcaa ggaattaatt ttgatttaaa caatctttta
     1921 tctaagcttc ctaataaagc taaggaaaat ttaaacaaag aagattaaag agccttttta
     1981 aggctctaaa ttgtagtgat gaaaagttta atcttacctc ctaatgaatt tttagatcac
     2041 tatattttaa acgctgaatt tcatcgtttt gctggaattt caaaaaatgc ttataaattt
     2101 tggaaaaatg tagaaatagg tagatatcaa ggaacaagaa ttatattttt gcatagaaat
     2161 tgcattttag aaaaacatca gcaagcttta aggcaatgta gtggtttaaa tggttttgta
     2221 ttggcaagtg ctttttgttc ttttactgga ttagctccct ctcatttagt ggaaaaaaat
     2281 aattcttcta tttataaact tttagagctt aaggaaattt gtgggattaa atttgttaat
     2341 ttaaaaaaat tttatgattt tttagggcta aattatcatc agcatattta tatagaaaaa
     2401 tgccattttt ttagcccagc tccttttgaa aagcgtatta aaatcactga gagtatgtgc
     2461 gttgggtatt attaagataa gaaaaaataa atgcacatag caaagctata atagccaaaa
     2521 agaaaacata aagtcccaaa gaaaaacgcc aaaaattact taaattattt aaggcaaaac
     2581 tatgcaagaa aaaagcaagt tgcggagtta aacctccagc tatagcataa gcaatattat
     2641 atgaaaaaga aagtcctgaa aatttaattt ttgcatcaaa tacttcactc attattaaag
     2701 ggcaaaaatt catcaccccg ctaaaaaaac atacaagtaa atataagcaa gctactaggt
     2761 taaaatcagc attttgtcta tataaagtat taaaataaag caagctcgca attccaaaaa
     2821 aaacactaaa aaatacacaa gatttaataa cgcctatttt atccgctaaa attccactta
     2881 taatacaccc taggcaaata agcaaaattc cacctatttg aagataggtt tgtatagaag
     2941 tattaatttg aagtattttt gccatataac taggcataag caaaatcatt acaacaatac
     3001 aacctgtcaa aacccaagta atcatcatag aaagaacaat tcccatttta gcttttttaa
     3061 acacttcttt taaaggaaat ttttctaaag ccttgtcttt tttcatttgt tcaaaaacag
     3121 gagtttctct taaaaatttt ctcaaataag cagaaataat cccaaaaatt ccacctaaaa
     3181 agaatggaat tctccaagcc cattcatgaa gttcttcttg ggtataaatt ttattcataa
     3241 ttaaaaaaac taaactacct aataaaattc cacctacaac cgaagcggtt aaaattccca
     3301 aataagttct tttttgacct tgtggtgcgt gttcgtatac aaaaacccaa gctccaggaa
     3361 gttccccacc tatagctata ccttgacaaa tgcgtataaa aactaaaagt acaatgcaaa
     3421 gaaagcctat gctttcataa tttggaataa aagctagagt aaaagttgga ataaccatta
     3481 ataaaatact aatcataaac attcttttac gtccaaattt atctccaaaa tgtgccagta
     3541 tcacaccccc taagggacgc gctaaatatc cagctgcaaa tattccataa gtattaaaca
     3601 tttgccaaaa actacttaaa tcttttggaa aaaagtttgt tgaaatataa tttgcaaaaa
     3661 atacaaaaat aataaaatca taaaattcta aagttccacc taatgatgaa agtcctaaaa
     3721 cttttatatc tttttggtta agggttttgt tcattcttaa tctccatctc ataaaaatca
     3781 tcatc
//
LOCUS       DAQSLY010000130         3741 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.131, whole genome shotgun sequence.
ACCESSION   DAQSLY010000130 DAQSLY010000000
VERSION     DAQSLY010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.131"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            19..645
                     /locus_tag="R2H98_001593"
     CDS             19..645
                     /locus_tag="R2H98_001593"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEE9024449.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            566..2119
                     /gene="rny"
                     /locus_tag="R2H98_001594"
     CDS             566..2119
                     /gene="rny"
                     /locus_tag="R2H98_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEE9024450.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKA
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFVAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            2128..2685
                     /locus_tag="R2H98_001595"
     CDS             2128..2685
                     /locus_tag="R2H98_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEE9024451.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFAAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
     gene            2685..>3741
                     /locus_tag="R2H98_001596"
     CDS             2685..>3741
                     /locus_tag="R2H98_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEE9024452.1"
                     /translation="MSLWNSFSYSFKEFHYLFFSVVVIFIFNILLEYNNFLNFKNQKH
                     YLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSLRIITHN
                     INFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFALPISLE
                     LRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIF
                     ALLLAYACLIGFVPSFVRSLIMAFWIFYLLCKNIKIINFVTLFCSILLCISLYPRLLF
                     SIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPLISYQQI
                     LGIILSGIFVIFYPLVLF"
BASE COUNT         1373 a          500 c          560 g         1308 t
ORIGIN      
        1 ttttttaaag acatattaat ggaaaaaaca gattttagag cattgcaaaa aatacgcctt
       61 ttcaaacatt caaaactaaa tttcaaacaa gattataaaa tatttaaaga atgtcttaaa
      121 ataataaaac tatttaaagc taaaaatatt ttaattttta ttcctttgca ttatgaacca
      181 aacttaataa aatttcgcca tattcttaat aaaaattaca aactttttgt tccatttatg
      241 caagataaaa gtttaaaaat tgtaaaatta agattgcctt ttattaaaaa aaggtttggg
      301 gttttagagc ctatagattc tttttttaaa gcaaaaattg atttagctat tgtgcctgta
      361 attggcgtcg ataaaaattt aaaaagaata ggacatgggc aaggttttta tgatagattt
      421 tttgaaaatt taaattacaa acctcatata atatttgtcc aaagtataga tgctttaagt
      481 caaaataatc taacacaaaa gcatgatatt tcaggaaaat tatacataaa cccttataaa
      541 aaatattaca agaaagaaag aaaaaatgat agaatcactt atcgcactta tagccgctat
      601 agtcggactc ggtataggat atttagttgc aaaaaaaatc aatgatgcca aatatgaaat
      661 tttcgtagaa caagccaaag ctaaagccaa agctatagaa tacgaagcgg agcttatttt
      721 aaaagatgca aaaaattcaa ttcttaatgc agaattagaa gttaaaaaaa aatacgaaga
      781 aaaaactcac aaaattcaaa aagattttaa tcaaaaattt gatgatcttt ctaaaaaaga
      841 acaaaaactt cagcaagaag aagaaaaact aaaagaagat aaagaatacc tttgcaagtc
      901 acaaaaacac attcaaaact tacaatctga tgttgataaa ttaaaaaata aatatcaaga
      961 aaaacttgac gatgttttaa aaattttaga acattcgaca ggacttacac aaaatgaagc
     1021 caaagaaatc attcttaaaa aagcagaaga aaattctcgc gagcaaattg cacatatagt
     1081 aagaaaatat gaagaagaag caaaaaatga agctaaaaga aaagctaatt tcatcattgc
     1141 tcaagctact tctcgttttg caggtgaatt tgtagctgaa agacttatca atgttattaa
     1201 cattaaaaac gatgaactta aaggacgtat cattggtaaa gaagggcgca atgttaaaac
     1261 cttggaaatg gttttaggtg ttgatattat catcgatgat acaccaggtg ctattatagt
     1321 aagttgtttt aatctttatc gccgtgctat tgctacaaaa gttatagaac ttttagttga
     1381 agatggcaga attcaacccg cgcgcataga agaaattcac gaaaaagtgt gtaaagaatt
     1441 tgatagtgcc attctagaag aaggcgaaac tatagttatg gatctaggtt taaataaaat
     1501 acaccctgaa attgtaaaac tcataggaaa actcaaatac cgagcaagct atggacaaaa
     1561 cgctttagca cattctttgg aagtggctca ccttgcagga atcattgctg ctgagtgtgg
     1621 tggagatgag aatttagcac gtcgtgcggg aattttacat gatataggaa aagcattaac
     1681 ccatgatttt gaaggatctc atgtggattt aggtgcagaa ctttgcaaac gctacaaaga
     1741 gcatcctgta gtaatcaatg ctatttacgc acatcatgga cacgaagaag ctacaagcat
     1801 agaatcagca gctgtttgtg cagcagatac tttaagtgct gcacgacctg gagctagaag
     1861 agaagtgtta gaagctttct taaaaagagt cagtgagcta gaagatatcg ctaaaagtaa
     1921 agaaggaatt aaaaatgcct atgcaatcaa tgccggaaga gaaattcgcg tcatagccaa
     1981 tgctcagctt gttaatgatg atgaaagtgt acttttagct aaggaaatag cagctgaaat
     2041 tcaagaaaaa atgcaatatc ctggtgaaat taaagtcaat gttatacgtg aacttagagc
     2101 tgtagaatac gctaaataag gtttattatg caagatatga ttgatacttt aataaaatat
     2161 ggttatattg ttttattctt ttactcttta gggggcggga tggttggaat tttagccgca
     2221 ggagttttaa gttctcaagg aaaaatggat cttagttttt gcattgctct tgcttttatt
     2281 gctaatacca taggttcaac tttgcttttt atacttggaa aatattacaa aaaagacatt
     2341 atgccttatt ttaaaaaaca ccgacgcaag atagcccttg ctatgataaa aacaaaacaa
     2401 catggaatta ttttacttgt aactcaaaaa tttatttatg gtttaaaaac tttcattccc
     2461 atagctgcag gtatggcaaa atataatttt attaaatttt ttattatcaa tactctagct
     2521 agtttggcat gggctattgt tctaggtttt gctgcttata cttttgggta tgttattgaa
     2581 gcaatttttg ataaactgag tttatatcct tatgctgctc ctttattttt attattttta
     2641 gccggaataa tttggcttta tttaagtaaa ttttctaaaa aataatgtct ctatggaatt
     2701 ctttttctta ctcttttaaa gaatttcatt atttattttt ctctgttgtt gttattttta
     2761 tttttaatat ccttttagaa tataataatt ttttaaactt taaaaaccaa aaacattacc
     2821 ttatagacaa cgctctatta acgcaccaat atataaaata taataaaaaa aataaaaaat
     2881 actgggtttt aaagttacaa actgaaaact tcacttttta tactacaagt tttaaggatt
     2941 taaatttaag caagaatcaa tttttaagcc ttagaattat cacccataat attaacttta
     3001 aagactatct gagtaaaagt ttttacgcac cttcttatga ttttgaaaaa ttaaaagaaa
     3061 aagaatacaa tcccattata tcttacttct taaatcaaca tacaaatgaa aagattaaag
     3121 aattttatgg tgctttattt tttgcactgc ccatatcttt agagcttaga aacgatgtaa
     3181 attactacgg tatagcacac cttatagcaa ttagcggtta tcacataggc ttacttttta
     3241 gtttaatttt ctttatttta gctccaattt atagtttttt ccaaaaaaga tattttcctt
     3301 atagaaattt acgtttagat ttaagtattt taatttttgc actactttta gcttatgctt
     3361 gtttaatagg atttgtccct tcttttgtgc gctccttgat tatggctttt tggatttttt
     3421 atctattgtg taaaaatata aaaatcatta atttcgttac gcttttttgt agtattttat
     3481 tgtgcatttc tctttaccct agacttttat ttagtattgg atttttattt tctattttag
     3541 gtgtttttta tattttttta tatatgcatc attttgcaaa taaatttaat aatcttataa
     3601 atattatttt gcttaatatt tggacttttt ttgctatggt tttacctgtg ctttattttt
     3661 ttccacttat aagctaccaa caaattttag gtattatttt gagtggaatt tttgtaatat
     3721 tttatccttt agtattattt t
//
LOCUS       DAQSLY010000131         3736 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.132, whole genome shotgun sequence.
ACCESSION   DAQSLY010000131 DAQSLY010000000
VERSION     DAQSLY010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.132"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1121
                     /locus_tag="R2H98_001597"
     CDS             <1..1121
                     /locus_tag="R2H98_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024453.1"
                     /translation="KSNLIIQKNTSGLNLFITKIKEYFNEKQIKIYWSDKYMKQLFIY
                     SNQESNISKIALMHSIDIQTQKYTIYTYAKLNKLDLASIVTGEFVGIFLNYLFPTNFK
                     ALQEQYESIVYQLYTFKDDSPLAVIRDHFVTYPFAINSKFISFDLKKIFYGIDLCTGV
                     FDTHFSFHYEIDQKLEENKEFLLKRLLSYLIIDEKRNATALEDIKEQKYIIDDYTFYF
                     KELKSLELKKCTIYQLPCNHPLFKEFRNKEKQISAFKKDEDSPIHAYNEALQILQDFA
                     NGLYNTSKDKTGRYIEDKNKTRRLLEKLNIIGQNNLKAMYMGINGNEESLKAIGKREN
                     NTSKASANADITSETKTPPNFIGRLATTIIIEDGLYMG"
     gene            1140..2408
                     /locus_tag="R2H98_001598"
     CDS             1140..2408
                     /locus_tag="R2H98_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024454.1"
                     /translation="MSETYEIYTPNGLTLDVEKDTNKILFKENVKPTGNYTEEYSKAV
                     FKSYHIMKNSPYKDYKPQYLDPNFYTGQKSTLVEFKEWQSIYLKDPIKGAIAPWTKAE
                     KAYYKSLKTKRERYKYLAIRSGLRSVVIDIPYDAYANVDEKGRLVNEDYAYIYDEVSS
                     HRGTLKSYSFFNEWELSALLLGNIKASPTAAVGFKARQQQALFLQAQLGDKNAFKSLG
                     LAVLCSNSFLTGQHWNKLRAKMIYDLHDYHYESLLDEFGMLPFLDEIIGADWTIDLNK
                     YDFAYDEEGRIIWALYNDIEKGKLKDPRDIDSTPESRNKFDDAMDGYENGMVTRFDVD
                     IRNERDERSAKLTMDTLVLSAKLAALTPPQGYPNAPYYFTPERLEWIYKRGYLDKLLD
                     PRIPAIYRYNFPQELRAKIRAYAKEHNIKE"
     gene            complement(2412..3311)
                     /locus_tag="R2H98_001599"
     CDS             complement(2412..3311)
                     /locus_tag="R2H98_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FHA domain-containing protein"
                     /protein_id="HEE9024455.1"
                     /translation="MIEKEEIGIAIENYDECISGSKTFVFNTKGGAIGSGDDCTFRIQ
                     DKLEQIKNTHAIVSYEEGSFTIAAFEDSDIYYNKSFSRMPSGYEIIISIGDIFKIGNL
                     EFRFVDAKSIEASIKENKKYLEDIEKRNHFDEIEIKPRGKTSINFDKNKELKEILENN
                     DYKFIEEEKADDSFLKEIIQKNPNSLEYENVLKSLVKNLKDIKTKQQNSKLNNDYSSI
                     SIKDFESIINNIPLIKSTRLINILALSLIAKELYTPIFEEMEENMFIKYIEAAIQNNI
                     KEDKILFENLTIKALEKYIKDFE"
     gene            complement(3308..>3736)
                     /locus_tag="R2H98_001600"
     CDS             complement(3308..>3736)
                     /locus_tag="R2H98_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEE9024456.1"
                     /translation="SLILNGNDNIKVNFTIQSLDLSADFSFIKLGYDNKNIQYDHTLN
                     QTLQIVAEKFNNGTSLNFIAYNYSNPNLNYTKSYKGEWAWYKFIKDNKSNSIYSIIFN
                     NNKNLYFDFEIINGASELNNIVYILNNLKIVENITGVNKQ"
BASE COUNT         1372 a          509 c          523 g         1332 t
ORIGIN      
        1 taaaatccaa tttaataata caaaaaaata catccggttt aaatctattt atcacaaaga
       61 taaaagaata ctttaatgaa aaacaaatta agatttattg gagtgataaa tatatgaagc
      121 aattatttat atactctaat caagaaagca atatatctaa aattgctctt atgcatagca
      181 tagatataca aactcaaaaa tatactattt atacttatgc taagctaaat aaacttgacc
      241 ttgcttctat tgtgactgga gaatttgtgg gtattttttt aaattatctc tttccaacaa
      301 attttaaagc cctacaagaa caatatgaaa gcattgttta tcagctttac acctttaaag
      361 atgattctcc tttagcggtt ataagagatc attttgtaac ttatcctttt gcaatcaatt
      421 cgaaattcat tagctttgat ttaaagaaaa ttttttatgg catagatctt tgcacaggag
      481 tttttgacac tcatttttcc tttcattatg aaatagatca aaagcttgaa gaaaataaag
      541 aatttctttt aaaaagactt ttgtcttatt tgattattga tgagaaaaga aatgcaactg
      601 ctttagagga tataaaagaa caaaaatata ttatagatga ttatactttt tattttaaag
      661 agttaaaatc tttagaactt aaaaaatgca ctatatatca acttccttgt aatcatcctt
      721 tgtttaaaga gtttagaaat aaagaaaagc aaattagtgc ttttaaaaag gatgaagata
      781 gtcctattca tgcttacaat gaagctttac aaattttaca agattttgct aatggacttt
      841 acaatacaag taaagataaa acaggaagat atatagaaga taaaaataaa accagaagat
      901 tactagaaaa actcaatatc ataggacaaa acaatcttaa ggctatgtat atggggataa
      961 atggaaatga agaaagcttg aaagctatag gcaaaagaga aaataacact agcaaagcaa
     1021 gcgcaaatgc tgatatcaca tcagaaacaa aaactccgcc taatttcata ggcagactag
     1081 ccactactat aatcatagaa gatggtttat acatgggtta aattaagaaa ggatagataa
     1141 tgagtgaaac ttatgagatt tatacaccta atggattaac attagatgtg gaaaaagata
     1201 ccaataaaat actctttaaa gaaaatgtta agcccacagg caactatacc gaagaatatt
     1261 ccaaagcggt ttttaaatct tatcatatta tgaaaaactc cccctacaaa gactataaac
     1321 cccaatacct agatcctaac ttttatacag ggcaaaaatc cactctagtt gaatttaaag
     1381 aatggcaaag tatttattta aaagatccta taaaaggagc tatagctcct tggactaaag
     1441 cagaaaaagc ttattataaa tctttaaaaa ccaaaagaga aagatataaa tatttagcaa
     1501 taagaagtgg attaagatct gtggttatag atatacccta tgatgcttat gctaatgtag
     1561 atgaaaaagg aagattggtt aatgaagatt atgcctatat ttacgatgaa gtaagttctc
     1621 atcgtggaac attaaaatct tattctttct ttaatgaatg ggaattatct gctttacttt
     1681 tgggaaatat taaagctagt cctacagctg ctgtaggatt taaagcaaga caacaacaag
     1741 cattgttctt acaagctcaa cttggagata aaaatgcttt taaaagttta ggtttagcag
     1801 tattgtgttc taattctttt cttacagggc aacattggaa taagcttagg gcaaaaatga
     1861 tttatgattt acacgattat cattatgaga gtttattaga tgaatttggt atgcttcctt
     1921 ttttagatga gattatagga gcagattgga cgattgattt aaataaatat gattttgcct
     1981 atgatgaaga aggcaggatc atttgggctt tatataatga tattgaaaaa ggtaaattaa
     2041 aagatccaag agatatagat tctactcctg aaagtagaaa taaatttgat gatgctatgg
     2101 atggatacga aaatggaatg gtaactagat ttgatgtaga tattagaaac gaaagagatg
     2161 aaagatctgc taaactgact atggatactc tagtattaag cgctaaacta gcagccctaa
     2221 ccccacctca aggctatcct aatgcccctt attattttac acctgaaaga ttggaatgga
     2281 tttataaaag aggatattta gacaaactcc ttgatccaag aattcctgcc atatatagat
     2341 ataattttcc gcaagaactt cgagctaaga taagagctta tgctaaagag cataatatca
     2401 aagagtaaaa atcactcaaa atctttaata tacttttcca atgctttgat ggtaagattt
     2461 tcaaaaagaa tcttatcttc tttgatattg ttttgtatgg cagcttcaat atatttaata
     2521 aacatatttt cttccatttc ttcaaatatt ggagtatata attcttttgc gattaggcta
     2581 agggctaaaa tattgatcaa tcttgtggat ttgattaagg gtatattatt aataatactt
     2641 tcaaaatctt tgatactaat agaagaataa tcattattta atttagagtt ttgttgtttt
     2701 gttttaatat cttttaaatt ttttaccaaa ctttttaaaa cattttcata ttctaatgaa
     2761 tttggatttt tttgaattat ttcttttaaa aagctatcat ctgccttttc ttcttcgata
     2821 aatttataat cattattttc taaaatctct tttaactctt tgtttttgtc aaaatttata
     2881 cttgtttttc ctctaggttt aatttcaatt tcatcaaaat gattgcgttt ttcaatatct
     2941 tctaagtatt ttttattttc tttaatgctt gcttcaatgc tttttgcatc cacaaatcta
     3001 aattctaaat taccgatttt aaaaatatcg cctatgctga ttattatttc atagccactt
     3061 ggcattctag aaaaggactt attataataa atgtcagaat cttcaaaagc cgcaattgta
     3121 aaagatcctt cttcataaga tactatggca tgggtatttt tgatttgttc tagtttatct
     3181 tgaatacgaa aagtgcaatc atcaccgctt cctatagctc caccctttgt gttaaataca
     3241 aatgttttag aaccactaat acattcgtca taattctcaa tagcaattcc tatctcttct
     3301 ttttctatca ttgtttattt acccctgtaa tattttctac tattttaaga ttgtttaaaa
     3361 tataaactat attatttaat tcactagcac cgttaataat ttcaaagtca aaatataagt
     3421 ttttattatt gttaaatata atgctgtata tagaattact tttattatct tttataaact
     3481 tataccatgc ccattctcct ttatatgatt ttgtataatt taaattagga ttagagtagt
     3541 tataggctat aaaatttaaa cttgttccat tattgaattt ttctgctaca atttgtaggg
     3601 tttgattaag agtatgatcg tattggatat ttttattatc atagccaagc tttataaagg
     3661 aaaaatccgc acttaaatca aggctttgaa tagtaaaatt aacttttata ttatcattac
     3721 catttagtat gagact
//
LOCUS       DAQSLY010000132         3728 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.133, whole genome shotgun sequence.
ACCESSION   DAQSLY010000132 DAQSLY010000000
VERSION     DAQSLY010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3728
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.133"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..670
                     /locus_tag="R2H98_001601"
     CDS             <1..670
                     /locus_tag="R2H98_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024457.1"
                     /translation="KNLNFFNDNLKKIYELLVLLNKSNEKNMDFINTLKPDENGEVKL
                     SFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDENFNKYKVNYSLA
                     LFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKSYLIVSPGKSKD
                     EITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDELIKQIAAVNEQ
                     YNES"
     gene            636..1820
                     /locus_tag="R2H98_001602"
     CDS             636..1820
                     /locus_tag="R2H98_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEE9024458.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            1807..2709
                     /locus_tag="R2H98_001603"
     CDS             1807..2709
                     /locus_tag="R2H98_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEE9024459.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            2646..3041
                     /locus_tag="R2H98_001604"
     CDS             2646..3041
                     /locus_tag="R2H98_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEE9024460.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            3041..>3728
                     /locus_tag="R2H98_001605"
     CDS             3041..>3728
                     /locus_tag="R2H98_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEE9024461.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDTLIHDINSL
                     GFWCIDDFFDY"
BASE COUNT         1409 a          402 c          641 g         1276 t
ORIGIN      
        1 aaaaaattta aattttttta atgataatct aaaaaaaatc tatgaattgc ttgtcttact
       61 taataaatcg aatgaaaaaa atatggattt tatcaatact ttaaaaccag atgaaaatgg
      121 ggaagtaaaa cttagttttg aggatttaaa actaaaattt aaacaacttg gagaaaaaat
      181 tacatcttta aataatcaaa ttgaattcac gcaaagctta gaagagagag aggcttggag
      241 tgttcttaaa gagcttgata aaatggatga aaattttaat aagtataaag ttaattattc
      301 tttagcttta ttttctatag taaattaccg tttcattatg gaaaaatacg gtatgggaag
      361 tttgaatgaa atttttgttc gatttaaaaa aattttaaaa gattcttgta gcgaatttga
      421 tgaactgtgg atgatagatg aaaagagtta tttgattgtt tcgccaggaa aaagcaaaga
      481 tgaaattaca cagcttgtaa atacaaatct taaaactata gaaaatttta gatttattta
      541 taagcaagat attataactc ctaaaattca cgtggcttat cttgataagc aaagtaagcc
      601 aagtattaat attttagatg agttaataaa gcaaattgca gcggttaatg aacaatataa
      661 tgaaagttga gaatttttta gctcaaaaaa gtataaatta cgataaaatt gatcgttttt
      721 tgatgtttag aatgtatgaa aaatataaga aatattttaa aaatattccc ataattcaac
      781 ttataggcac aaatggtaaa ggtagcacgg gtagatattt aacccaactt ttagaaaatt
      841 taaattataa aatagggcat tatactagtc cgcacatttt cagttttaat gaaagatttt
      901 atcttgatgg taagattgca aacgatgaag aattagaaca agctcatata agacttgaag
      961 aaatttttaa acaagacttg caaaaattaa gttatttcga atatgctact tttttagcta
     1021 tgattttatt tcaaaaatgt gattttattg ttttagaagc aggagtgggt ggagaatatg
     1081 atgctacttc tgtttttgaa agaagaatga atatttttac aagaattgga tttgaccata
     1141 ttcaaatttt gggcaattct ttagaagata ttgcaagaac caagcttaaa gttatggcgc
     1201 ctatagcact tataagtgat gagcaagagc aaaatgtttt aaatttagca aaaaaaattg
     1261 cttttttaaa aaaagctaat ttgcaagttt cttccttaaa tccttttttg aaagaaaaat
     1321 ttgagattta ttgtgaaaag tttgttttac cttgtttttt aaagcataat ttaaagcttg
     1381 cattaaaggc ttgtgaaatt ttaacttcac aagaaaaaac cttagaagct ttaaaaaagt
     1441 tacaagagtt aaatttacaa ggaagatgcc aagaaatttc tccaaatttt tttgttgatg
     1501 tgggtcataa tcccatggct gctaaggcta tgcttgataa atttcaagga gaaaaaataa
     1561 atcttattta taatgcttat ttggataagg atatttttca aattttaaat acattaaagc
     1621 ctattattga tacaatacaa atatataaat ataaaagtgc agaacgaaag ctggccgatg
     1681 atgaaattta tagtattgca tcaaagctag gtatacaatg caaagaattt gtaaaattag
     1741 aagagaataa aaaaaatcta gtttttggtt cttttatgct ggtagaaaat tttttaaagg
     1801 agtggtgtgg taaaaaataa attcactatt accattacag atattaacgg ttcaagacat
     1861 ttttatttaa atcaaataat taaaaaaata gttttttata ctattgcttt tattgtttta
     1921 tttttagttt ttagtggttt ttatatcaaa tatctcgata gcaaacttag cgatatcagt
     1981 gaaaagcgtg aggagctttt gaaaaaaagc aaagaattgg aattatctaa ttcgcaaatg
     2041 caaaaaagca tagaagaaaa aactcagcag tatgcagcta tagaagataa aatagcttct
     2101 tttgaagagg ctttgggctt agaagtagaa aataatctta caattagtgc aagacttgat
     2161 aatcttcagc ttaccaatga gcagcaactt ggaattttgg gacaaattcc taatggatgg
     2221 cctattgaaa ataaaggcat tacaggaaat tttggctgga gagagcatcc gcttttaaaa
     2281 agaagggaat ttcatcctgg tattgattta agagcagaaa ttggtacccc tatttatgca
     2341 ccagcaagtg gagtagtgga attttcaggt tatagtgata atggctatgg ctataatgta
     2401 attttattgc ataattttgg ttttaaaaca gtatttgctc atatgatgcg caaagaagtg
     2461 gtcaaagcag gtcaatttgt taataaaggg cagttgatag gttatagtgg caatacaggt
     2521 ctttctacgg ggccgcattt gcactatgag gtaaggttta ttaataaaac tttagaacct
     2581 ttgtattttt taaatttgca aagaaaaaat atgaatgatt tttttaatca agaaaggaga
     2641 gttccatggc aatctttaat aaaggcggta tcagcccaac atccagctct agctcagaaa
     2701 caacagtaat ttcttcaggt gcgagaattg agggtaaatt ttattttgct tctatgctcc
     2761 atgttgatgg agagttaagt ggcattattc attctgaaag cattgtggtt atcggaaaaa
     2821 atggaaattt aaaaggtgaa ttacaagcag ataaaattgt agtaaatggg tgttttgaag
     2881 ggcaacttga ggctaatagt ttagaaattt tagcgggcgg agttgttaat ggtgatattt
     2941 caacacaaaa aatttctata gaaaatggcg gtcgctttaa tggaactagt aaaattaaag
     3001 aagatactat caaacttatt gaaaataaca acgaagaata atgcaagctt cattttatga
     3061 atacttacaa aatccaaaaa tttgtgaact ttttctttgt aaagatgaaa aacaagcaga
     3121 tttactcgct caagtttcac gatttaaggg tttaaaaacc tttgttttac ctgattttag
     3181 agcgcagttt ggagatgatt taagggcttt ttctaaagaa ctttttgatc tttgtaagat
     3241 tttaaatgct tatcataaag aagaagaaaa aaaaatcctt atttctcctt taaatactgt
     3301 tttaaaaaaa cttccttcaa aaaaacattt acaaaattat catatcgata aaaaacaaaa
     3361 ttttgatttg aaatgttttg aagatgaaat ttcaagattg ggatacgaat ttgtagatat
     3421 agttcaggat aaaggtgaaa tttcaattcg tgcggatatt attgatattt tttgtatcaa
     3481 tgaagaaaat cctattagaa ttttactttt tggcgaagag attgaaagta taagatattt
     3541 tgatttgcaa agtcaaaagt ctattcctaa cgaactagaa cattttgaaa tttgtccttt
     3601 tttaaaatat tttgacaaag aaaattatga aatttttaag gacaaattag aagattttca
     3661 aagcgatact ttaatacatg atatcaattc tttaggcttt tggtgtattg atgatttttt
     3721 tgattatt
//
LOCUS       DAQSLY010000133         3721 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.134, whole genome shotgun sequence.
ACCESSION   DAQSLY010000133 DAQSLY010000000
VERSION     DAQSLY010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.134"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..501)
                     /locus_tag="R2H98_001606"
     CDS             complement(<1..501)
                     /locus_tag="R2H98_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEE9024462.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNINFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILKQKPYELSGGEATRVGLIR
                     ALVLNPK"
     gene            complement(494..1204)
                     /locus_tag="R2H98_001607"
     CDS             complement(494..1204)
                     /locus_tag="R2H98_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9024463.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLNEFLRYYNA"
     gene            complement(1201..1995)
                     /locus_tag="R2H98_001608"
     CDS             complement(1201..1995)
                     /locus_tag="R2H98_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024464.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPCLTPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSNAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(1982..2926)
                     /locus_tag="R2H98_001609"
     CDS             complement(1982..2926)
                     /locus_tag="R2H98_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024465.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(2926..>3721)
                     /locus_tag="R2H98_001610"
     CDS             complement(2926..>3721)
                     /locus_tag="R2H98_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEE9024466.1"
                     /translation="FGILREKSADYRALMFNFDNEFLKDLKVRQALNYAVDKESIIKN
                     LLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFKKNKDGNFEKDGKILE
                     FEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYSKVDSFLIGWGSPLDP
                     DFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSNLEERKKYYKDFIDAL
                     YENPPFIFLAYLDFALVYNKDLKGIKARTLGHHGVGFTWNVYEWSK"
BASE COUNT         1498 a          666 c          387 g         1170 t
ORIGIN      
        1 tttaggattt aaaaccaaag cacggataag acctacacgc gtggcttctc ctccacttaa
       61 ctcatagggt ttttgtttta aaatttgctt ttttagacta aaaaaatcaa aaaattctaa
      121 aatcaagtca tcattctttt gtaaattaaa attttccaaa ccatcttgta taagattttt
      181 gattttttta taagggttta aagccatttt ttgatcttga aagcaatact gaatttgctt
      241 tcttaaaagt ctttgtttgt ttttatcaag cttgtgtaag ttaagatttt cataccatac
      301 ctcaccctca cttggatctt ctaaaaaaca aagaattcta gctaatgtgc ttttacccgc
      361 accactttta cctaaaatta ttaaattgtc attttcattt aaagaaaaat tgatattatc
      421 aaaaataata tgtctttctt tttttaaata ccaatgcttt ttaagctcat aaaacttact
      481 taaattacaa actttaagca ttataatacc ttaaaaactc atttaagcta tataaatttg
      541 aactattttt ttctagcata agaatttcat ctgctaaaga atttaccaaa tttaaatcat
      601 gagtgatgca aactaaggct gtagtatttt ttaattcttt taaaatcgat ataatcttag
      661 aagcgttttc tttatccaaa gaagctgtga tttcatcaca aattaaaatt tggggttgat
      721 ttaataatgc caaagctagg ctcacccttc ttgccatacc caaacttaat tcattagcat
      781 aagaatgcca caaacgatca agattttcaa atcctaattt ttgaaaataa gaaaaagcgt
      841 aatcttttct ttctttttgt tttaattttg tatgagtttt taaaacaaga tgacataaat
      901 ttccaatatc caaataagga taaagactaa gctctgcatc ttgcaaaaca agtgccacct
      961 tagaacgaaa atttctaagt tcttctttat taaaattaaa aatacaagaa ttatgaaaac
     1021 ttaattcatc aaaacttatt gtgaaattag aatctaaaag tcttaccaaa gcttttccca
     1081 acaaactttt acccactcca ctttgtccta gtatcattaa agttttgcct gtttttatat
     1141 ctaaattaat atccttaagc aataaattat tcttcaaact gatatttaaa tttcttacct
     1201 tcaagatctt ataccccaaa ttttttgtaa aaaattaccc aaccataaaa gaggtaaaaa
     1261 caacaaaagc aagcttaaaa gtggaaaaag tatcatccac caagcgccta taaaaactgc
     1321 gtttgaagac tcactcaaaa gagtacctaa agttggaatt tcaaatccta aacccagtcc
     1381 aaaaaaactc aaagtagctt ctgtggctat agcatgaacg atattaaata taaaaagtgt
     1441 aaaaatcagt gtttttaaag caggtattaa atctttaaaa aaagctctaa atttagttct
     1501 tccaagcact atatttgctt tgtaaaaatc taaattttca agtcttttta attcactttc
     1561 tataattctt gctatgaaac accaatgaat taaagcgatt aaaaaaatca tcaaaaacac
     1621 atcagaagtt atcatacttt gaaaaaacat cataagtaaa aaagcaggca aggctaaaaa
     1681 aaactctaaa atacgcatcc aaaaaacata aaaaaaacat cgcgctaaaa acaaataaca
     1741 caaagcaaag ataatagaca ataaagatcc accaacacct ataatcaaag aatttctcaa
     1801 agcaaaaagc aaacgagaaa acaaatccct gcctaaaaaa tcagtcccta aaatataagt
     1861 aaaattagga gcttgatgca aattttctaa atgagtactt aaaatatcaa aaggagtcaa
     1921 acaaggtgca aacaaggcac ataaaaataa aaaaattaaa ggcgcaagaa tgataagaaa
     1981 tttaaacaaa atcaagcctt cttaatctag gatttaaaat cctagctaca atatcactta
     2041 aaaatgtaaa aaatgctgca agcaaaacgc taaaaaatat aagtgcaagt acaacaggat
     2101 aatctttaaa aataatactt ttaaaaagta aagacccaag tccctcgtaa gcaaagacac
     2161 tttctaccac ataagttccc atcataaaac ttaaagcact tcccccaaaa taagccacaa
     2221 tagggcttaa agaatatttc agaactaaaa aataaatatc tttctccctt aaagctctag
     2281 cgtataaatt ttgaataaaa atttgagaaa aactttcatt gataaaattt ctagcaatcc
     2341 ttaaaaataa cgccaaatgt gataaaacga gcaccaaaac aggcaaaatc aaatgctcta
     2401 aacgatttaa aaaatcatct tcaaagccta tatcactact tcccataaca ggcaaaattt
     2461 tccaaaaaat tccaaaaatc aaaacaaaca ataaagccaa aacaaaagga ggtaaagcaa
     2521 aaaaattaaa agctaaaaaa gtgatgattt tatctataaa actttcttta taataatatc
     2581 ccaaaagtgc caaaaaaaca ctgagtaaaa ataaaagcat taaggcacta aaacccaaaa
     2641 taaaagtatt aaaaattctt tcttttataa gctttaaaac actttctcca cttaaaaaag
     2701 aaactcctaa atctcctttt aaagccttaa aaagccaaat tttatactgc tctagcaaag
     2761 gcttatcaag ccctaaattt tgttctattc tttgaacaaa ttctttactt tgtgaattaa
     2821 ctccattagc ataagctata ctgcctttac taaaataaag taaaacaaaa cataaaaaag
     2881 tgctaaaaaa tgctatgaaa atactaaaaa ctaagcgttt tagcactatt tactccactc
     2941 ataaacattc caagtaaaac ccactccgtg atgacctaaa gtccttgctt tgataccttt
     3001 taaatcttta ttataaacta aagcaaaatc aagataagct aaaaaaataa aagggggatt
     3061 ttcatacaaa gcatctataa aatctttata atattttttt ctctcttcta aatttgaagt
     3121 atttcttgct ttttgcaagg ctatatccac ttttttatca tgataatgtc caaaattcca
     3181 accctcatca tttaaagcac tatcttgcga actttcaaat accctaaaag tgtgaaaatc
     3241 aggatctaaa ggacttcccc agcctattaa aaaactatct actttagaat aatcaaaact
     3301 tccagcaggt ttagccacca ccttgcttac aactcctatt tttctaaatt cgctttgcaa
     3361 aattccagcc aaacttaccc ttaaaggatc attactcatc gcccaaattt caaattctaa
     3421 aattttccca tctttttcaa aatttccatc tttatttttc ttaaaacctg cacttacaag
     3481 caagtcctcg gcttttttag gatcatattt gtaaatttta aaattcttag aatttgccca
     3541 agaacgctct aaagggtgat tggctacaaa agcataatca tgtaaaagat tttttattat
     3601 actttcttta tcaactgcgt aatttaaggc ttgtcttact tttaaatctt ttaaaaattc
     3661 attatcaaaa ttaaacatta aagcccgata atcggccgat ttttcacgta aaattccaaa
     3721 a
//
LOCUS       DAQSLY010000134         3621 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.135, whole genome shotgun sequence.
ACCESSION   DAQSLY010000134 DAQSLY010000000
VERSION     DAQSLY010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.135"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            19..990
                     /gene="legB"
                     /locus_tag="R2H98_001611"
     CDS             19..990
                     /gene="legB"
                     /locus_tag="R2H98_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEE9024467.1"
                     /translation="MRNILVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLE
                     KSSFLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYIPIDEKHPLQPQSPYSASKIAADMMALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            983..2137
                     /gene="legC"
                     /locus_tag="R2H98_001612"
     CDS             983..2137
                     /gene="legC"
                     /locus_tag="R2H98_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEE9024468.1"
                     /translation="MFKKEISFIKSLFNKESIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKTRFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTRKLIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPIWKSLPSLKAFQNCQSNELINTKNLEKRLVNLPSSVRIANKKE"
     gene            2247..2471
                     /locus_tag="R2H98_001613"
     CDS             2247..2471
                     /locus_tag="R2H98_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024469.1"
                     /translation="MKNVIIIGAGGFARELYSYLKDANYEIIGYIDIQENIFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKTL"
     gene            2562..2843
                     /locus_tag="R2H98_001614"
     CDS             2562..2843
                     /locus_tag="R2H98_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEE9024470.1"
                     /translation="MCPFVTINANSNIGDFVLCNIYSSIAHGCKVGEGSILSPYATLN
                     GNSSIGKNCFLATRVSLLPCVNLEDNCIVSAGSIISKTTHPINLFFIKI"
     gene            2863..3573
                     /locus_tag="R2H98_001615"
     CDS             2863..3573
                     /locus_tag="R2H98_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024471.1"
                     /translation="MKKTNIIDFGLMGKQISALFYLLGHEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNNIVFS
                     NSSSLSMDDLNCDFIHFFNTIYIKLIELCDSNLERFTPLKDLKKLGFHIICSKGNRGA
                     LANLLLFNEISSFFKIIEKYDYNFKECQTVYDLLYENRNLLNIIDTIGIELCNKICKN
                     LKEDDENFYHPKIFKKAL"
BASE COUNT         1379 a          516 c          594 g         1132 t
ORIGIN      
        1 gatggaaagg gtgagaaggt gagaaatatt ttagttacag gtgctgatgg ttttataggt
       61 tctcatcttt gtgaaagttt ggtcaaaaaa ggttttaaag tcagagcttt aagtcagtat
      121 aattctttta atttttgggg acatttagaa aaaagttctt ttttaaaaga catggaggtt
      181 ataagtggag atttaagaga cagttttttt tgcgaaaaaa tcaccaaaaa tatagatgcg
      241 atctttcatc ttggcgcttt aatcgctatc ccctactcct acacagcccc acaaagctat
      301 gtggatacca atgtcaatgg cactttaaat atgctcgaag cagctaaaaa aaacgagatt
      361 tcacatttta tccacacctc aacaagcgaa gtttatggca cagcctttta tatacctatc
      421 gatgaaaaac accctttaca acctcaaagc ccttattctg caagcaaaat cgctgcagat
      481 atgatggcgc tgagttatta taattctttt aatttaaatg tcaatattgc acgccctttt
      541 aacacctatg gaccaagaca aagcgcaagg gctatcatac ctaccatcat cacacaaatt
      601 ttaagtggag caaaggaaat caaactagga gatttaagcc ctaaaaggga tttaaatttt
      661 gtgctagata cttgcgaggg ttttatctct cttttaaatt taaaacattt tggagaagtt
      721 tataatatag gctcaggagt ggaatactcc atgcaagaag tacttgatct catacaaaaa
      781 attttagatt ctaaagtaaa aatcatccaa gatgaacaaa gattgcgtcc taaaaatagc
      841 gaagttttta gactttgttg cgatgcaaac aagcttaaaa aagctacaaa ttggcaaagc
      901 aaaataagtc tagaagaagg cttgagacaa agcatagagt attttaaaga aaatttagaa
      961 aattataaaa gtgagcttta taatgtttaa aaaagaaatt tcttttataa aaagtctttt
     1021 taacaaagaa agtattgccc tacatgagcc ttgttttata ggcaatgaga aaaaatatct
     1081 tttagagtgc attgatagcg gttttgtttc aagcgtggga gaatttgtaa cgcgttttga
     1141 agaagcttta aaagaaaaaa ccaaaacacg ctttgtcatc gctacaaata caggcacagc
     1201 agcccttcat atcgctttac tagctaatgg tatcgatgaa aactgcgaag tcatcactca
     1261 aagcataagc tttgtcgcta cggccaatgc tatcgcttat acaggtgcaa aacccgtttt
     1321 tttagatata gatgaaaaca ctctaagttt aagtcctaag gctttagagc attttttaga
     1381 aaatcaaact tatcaaaaag ataatcttag ctataacaaa accacacgca aactcatcaa
     1441 agcttgtgtt attatgcaca cctttggttt aagcgctcat ataaaagcca tcaaagaact
     1501 ttgtgaaaaa taccacatcc ttttaattga agatgccgca gaagccttag gaagcaccta
     1561 tgaaaacaag gccttaggca cttttggaaa gtgtggaatt ttaagtttta atggcaataa
     1621 aatcatcaca ggtggatgcg gtggggcgat attaagcgat gatgaaaatt tagctaaact
     1681 tgcaagacac cttagcacca cagctaaaat cccccatcct tacgaatacg atcatgatag
     1741 gatagcttat aattaccgtc tttgcaatat aaacgcagca atcttgcttg caggacttga
     1801 aaatttagaa ctttttttag aaaacaaaag agaacttgct aaaatttaca aggatttttt
     1861 taaaaatcac gataaatgta aatttatcga tgaaaaaagc aatgaaaaaa gcaatttttg
     1921 gctcaatacc ttgcttttta aagatgaaaa tttaagaaat atctttttag aagaatgctt
     1981 gaaaaataat attttcgtcc gtcctatatg gaaaagctta ccgagtttaa aagcttttca
     2041 aaactgtcaa agcaatgagc ttataaacac taaaaattta gaaaaacgtt tggttaattt
     2101 acctagtagc gttagaatag caaataaaaa ggaatgatgc gttgcaaaat ttaattcaaa
     2161 gcattaaaaa aattttaata agaaaaaata tgagagtagc gggggggggg atttgatttt
     2221 tttacttctt cttttaggag aagtgcgtga aaaatgtcat catcatagga gcgggtggct
     2281 ttgctagaga gctttattct tatttaaaag atgcaaatta cgaaattata ggctatattg
     2341 atatacaaga aaatattttt tttgacttaa aatatctagg caatgaagat aacttcgata
     2401 aaaagttgat tcaaaaagca tcttttgctt taggtgtagg acaaatcaat ttaagaaaaa
     2461 aaaccttgta aaactttcaa aaaaaatcat gtaattttat cacttttata catcctcaat
     2521 cttttgtttc aaaagaagct aaaataggac aaggggttat agtgtgtcct tttgtaacca
     2581 ttaatgctaa ttcaaatata ggagattttg tgctttgtaa tatttattca agcatagctc
     2641 atggttgtaa ggtaggagaa ggaagtattt taagccctta tgctacactt aatggaaatt
     2701 caagcatagg aaaaaattgt tttttagcta ctagagttag cctgttgcct tgcgtaaact
     2761 tagaagataa ctgcatagta agcgcaggta gtattattag caaaactaca catccaatca
     2821 acttattttt cataaaaata taattaaaac aaggaaaaaa caatgaaaaa aactaatatc
     2881 atagactttg gtttaatggg taagcaaata agtgctttat tttatttgtt aggccatgaa
     2941 ataggtgttt ataataaaag caagctcaat atatacgaat ttgaaaaaca aataaaactt
     3001 ctacaaagaa aaatagattt ttctaatttt aacgccggaa aaataaacat ttaccaacat
     3061 atagaagatc ttaaaaatag cttgactata gaaagcttaa atgaagattt aaatttaaaa
     3121 aaagaaatca tgcaaattct tagagacaat aataatatag ttttttcgaa ttcaagttct
     3181 ttgagtatgg atgatttaaa ctgcgatttt atacattttt tcaatactat ttatatcaaa
     3241 ttaatagaac tttgtgattc taatttagaa cgatttaccc cattgaaaga tcttaaaaaa
     3301 ttaggatttc atatcatttg cagtaaaggc aatcgaggag ctttagcaaa tttacttttg
     3361 ttcaatgaaa tttcatcatt ttttaaaatt atagaaaaat acgattataa tttcaaagaa
     3421 tgtcaaacag tttatgattt gctttatgaa aacagaaatt tgttaaatat tatcgacact
     3481 ataggcatag aactttgtaa taaaatttgt aagaatttaa aagaagatga tgaaaatttt
     3541 taccatccaa aaatctttaa aaaggcctta taaaaaggaa ttttaggtag aaaaataaaa
     3601 caaacataag tgatatttta t
//
LOCUS       DAQSLY010000135         3593 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.136, whole genome shotgun sequence.
ACCESSION   DAQSLY010000135 DAQSLY010000000
VERSION     DAQSLY010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3593)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.136"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            542..3251
                     /locus_tag="R2H98_001616"
                     /pseudo
     CDS             542..3251
                     /locus_tag="R2H98_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799442.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
BASE COUNT         1240 a          553 c          671 g         1129 t
ORIGIN      
        1 acaaactatg caaactatac aatcaaaaaa tgaatataac tcaaaagact ttgataaaga
       61 tagtatcttt ttatctaata tgattatgaa tgtgagattg aagtaaaaag atagtagatt
      121 tggtaaattt aaatcttgtt aagtttatta tttagttcaa ataaaaaata taaaaaaata
      181 tagaaattca atagaagaag agaagcttag ttaaaagttt gtttggtaag ccaaagggat
      241 tgttctaaac cctgcaaaag caggggatac tcaagaagcc ttgacatagc aaagcattaa
      301 gagtataatt attagaacaa tgtttagcaa tttaatcacc gcctttctag gttatgatta
      361 atgccaaagg tagccgcctt tggcatctac cttttataat tataccaaac aaactcttta
      421 acttcttaaa acagtccatg aaaagatttt actttttatt ctttagcact ttgttttttg
      481 caccttcatt tttgcttggt gcaactgaaa tctaatttat acttggggtt atggcgatgt
      541 gatgaatgaa atcatgcaag ctgttaaagg aataaccact gaaacaggct atatcgttaa
      601 tgcagcctta gctatttcat tattgctttt tagtatcaaa aaagcaatgg atggacaaac
      661 aaaccctgtg tttgaacttg gaaaaatgtt tgtacttttt gctgtagtgt ggtacatatt
      721 tttaagggcg ccaaatgaca ataatcaccg cttcatgatt cacgatgaag tcactagcaa
      781 agattatgtc atttctcaaa ttcctatagg cataggaaaa agctttgcat tgatgacgca
      841 atttgagaag gttatcctag aagctatgga aaaacatttt tcaactccac aatctacaaa
      901 tttttctaac gcaggtttag gtttttcact tcaagtgatg agtactttac caagtgtaaa
      961 gctttcggct attgatgcaa ctttacaaaa aaatattgat ttttacttta gaaactgcgt
     1021 ttcagtaggt atcttgctta atcaacaagg tagaaatctt tttcaaaact ctgataattt
     1081 aatacaagat cttttcacaa acataggcaa tggctctcag cttactcctt tgtttgaaaa
     1141 taacaataat attgaaaaac aaagtgttgt accttgttct gatgcaggtc ctcaaatcgt
     1201 tgaaatgatt aaaaacgata cagatgaagc tatgaagatt catgctgctt tgcttggtat
     1261 ggcgaatgat atggcaaatt atgagcaaaa gttcttaggc gctgcacaaa tctataatga
     1321 acaagctgta agtgctagat cttatttgca acaatccatg ataatgcttg cttctcaaga
     1381 tgtaatcatt aataccgcta aatcagtagg attaaatcct gcttctgtgg ctgcaaatac
     1441 tgcttatgcg gatcagcaat tttatgcaag tatgcaagca caaggacact tggcacaaac
     1501 ttatttgcct ttagctaaag cttatttaac agctattatc ataggtttgt cttggcttgt
     1561 tgctttgctt tctattgtgt ttggctctta tgctcatatt aagatgtttt ttactctatg
     1621 tatttggata gtactttgga ctcctatact ttgtattatt aattttataa atgattttaa
     1681 tcttatgaat gttgcacagg tgataacagg tggaaaagca gctttaagct tgggagataa
     1741 cattcttata ttcaaagaag tagtaaatag atcaaatttc atgaattatc ttgtgatgag
     1801 tactcctgtt ttagcttatg ctatagctaa agcaagtgaa caaggatttg taacttttgc
     1861 ttctggatta tctcaagctc taacaggtgc ttcaagagct gctggaagct ttgcaaatca
     1921 gcaagctcta tctacacaaa ctagcattgc tgctcctaga ggagatgaag tttgggctgt
     1981 ggatgcaggg gtgatgagct tgcaaagtgc tataagtgca gggggtggta gatttagcat
     2041 gtctagtata acagggggtg gaacaacagc tagagatgtg aatacaggta caagttttgc
     2101 tttgggaaat catggtgaaa tttctaatat gaataggact tgatgtaaaa cacgcacaaa
     2161 gcgaaactta aactagacaa gattctcttg ctaattctat tgccgatact cacaaaacag
     2221 gcattaatca cggtattacc tctgattatc ttagaaatca tggtgcagga gtagaagata
     2281 ctaaagcaat tgagaaagca gaaacgaaag ctttaaaaga aactatgaat gaagcattaa
     2341 gcgataaatc tagcttctct gaaacagaca aaaaagcttt agaaggaagt attagcgctt
     2401 atgctagtgg ctcagcaggg attgaaatct ttggaaatgg tggaaaaata ggtggagaaa
     2461 ttaaagggac agcttcaata ggcacaggct caactgaaac acaagaatat tcaagaagcc
     2521 taagtaaaga agggcaggct gcatttgata aaatgtatgc tgaaaaactt ggcaatatca
     2581 ttaaatctaa tgatagtgtg gcttctgctt attctaatgc tctatctaca agcacaggta
     2641 gtgaatttgc tgatgccaaa caaaaagcac attcttatag tgaagcaagt caatacagtg
     2701 aagctataca ggcaagtaat tttacttaat atggctgaaa attacattgc tgaaaataat
     2761 ttgggtgaaa ctagagaaca acaagttgct gctgcagcta aagggttaga aaacttagcc
     2821 gcaaggggag atttgcaagg cttgttgcat tatgctaata tgaatacagc taagccaaat
     2881 gctgatagaa ttcatgatgt tagcaataaa tcttattaca gtccttcaag tgtaggagct
     2941 aataatgctc ataataatga tgcagtagct aatcaaaata agttaaacag cttaggaaca
     3001 acaggggggg ggataatata agaaatgaat ttaaccaaca aagtggggct gctataagta
     3061 atttcaaaaa tcaaggaata agtacttcta atgtggtcaa taatagtgct aaagatgcca
     3121 tagtagaaca agatgctaac aggagaatgg gagtaaatcc tagctcttat ataatacaag
     3181 atgcaagtaa atcaggtaat gagcttgcaa aagaagctca aggtttattt gatgctatga
     3241 gcaaaaaata agtctagctt tttagttagg cttagtgatc tcgtatagca ccgaatatat
     3301 aatcaaattt acgaggatcg ctttctatat atcccccaat ttcacttgtt cccccatgct
     3361 ttttctcatc atagggaact atttttatat ttttagcaag gaataacaca aaagcaaaac
     3421 aatagctgca actccgcaag aaagctaaag aacaagtatg agtttttcgg ttgtagtcac
     3481 ttttgctttt tcctacattt atccatcttt attcctttca atatttttta aataacttac
     3541 tatgactacc tagttaaaat atttagctct aactcattat tatgtttttg ata
//
LOCUS       DAQSLY010000136         3563 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.137, whole genome shotgun sequence.
ACCESSION   DAQSLY010000136 DAQSLY010000000
VERSION     DAQSLY010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.137"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..179
                     /locus_tag="R2H98_001617"
     CDS             <1..179
                     /locus_tag="R2H98_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024472.1"
                     /translation="KFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLIC
                     IKNDVIQFCENISF"
     gene            236..550
                     /gene="trxA"
                     /locus_tag="R2H98_001618"
     CDS             236..550
                     /gene="trxA"
                     /locus_tag="R2H98_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEE9024473.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            684..1622
                     /gene="trxB"
                     /locus_tag="R2H98_001619"
     CDS             684..1622
                     /gene="trxB"
                     /locus_tag="R2H98_001619"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEE9024474.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMTPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(1660..3441)
                     /locus_tag="R2H98_001620"
     CDS             complement(1660..3441)
                     /locus_tag="R2H98_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEE9024475.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAVVLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDNDDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNINEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFISKHKYKKGVDTSKI
                     LDEGTLYVGQFNGNVGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANLRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
BASE COUNT         1178 a          567 c          570 g         1248 t
ORIGIN      
        1 ttaaatttac tcaaaatgat tatgaagttt ccgagcgttt ggatagaaaa aaacttgaaa
       61 aaattttaaa aactatagaa ttttatcatc ttaaaaatgg aatttcatcg gattttcaga
      121 ttgatctgat ttgcattaaa aatgatgtga tacaattttg cgaaaatata agtttttaag
      181 ctgatattta aaaaaataaa atacaattag acaaaaatta aagaaaggaa aaattatggg
      241 aaaatatatt gaattaacaa gtgataattt tgctcaagca aaagaaggtg tagctttagt
      301 tgatttttgg gctccatggt gcggaccttg tagaatgctt gctccagtta ttgatgaact
      361 tgcaaatgac ttcgatggta aagctaaaat ttgcaaagta aatacagatg aacaaggtga
      421 tttagcagct gaatttggtg ttcgctctat tcctacgctt attttcttta aaaatggtga
      481 agttgtagat caactcgttg gtgcacaatc taaacaagca attagtgata aactaaactc
      541 tttactataa actaaaggct agtataacta gccttcttct taaaaatttc aaatttatac
      601 taaataataa tttttattaa ctactattaa gaataatttt tatatcatta ttaataataa
      661 aattcaatat aaaggaaata taaatgttag atgtagcaat cataggtgga ggtcctgctg
      721 gacttagtgc tggactttat gcaactagag gtggtcttaa gaatgtagta atgtttgaaa
      781 aaggtatgcc tggtggacaa attacctcaa gttctgaaat agaaaattat ccaggtgtag
      841 cccaagttat ggatggaatt tcttttatga ctccttggaa tgaacaatgt atgcgttttg
      901 gtttaaaaca tgaaatggtt ggagtagaac aaattttaaa aaatagtgat ggaagtttta
      961 ccatcaaatt agaaggtggt aaaacagaac ttgctaaagc tgtgatagtt tgtacaggct
     1021 cagctccaaa aaaagcaggt tttaagggcg aagatgaatt ttttggaaaa ggtgtaagca
     1081 cttgtgcaac ttgtgatgga tttttttata aaaataaaga agttgcagtt ttaggtggtg
     1141 gagatacggc tttagaagaa gctttatatc tagcaaatat ttgttctaag gtttatctta
     1201 tccaccgcag agatgagttt agagcagctc catctacagt agaaaaagtt aagaaaaacg
     1261 aaaaaataga actcattact agcgcaagtg tagatgaagt atatggtgat aaaatgggtg
     1321 ttactggggt aaaagtaaaa ttaaaagatg gtagtattag agatttaaat gttccaggaa
     1381 tttttacttt tgttggtctt aatgtaagaa atgaaatttt aaaacaagac gatggtaagt
     1441 ttttatgcaa tatggaagaa ggtgggcaag taagtgttga tcttaaaatg caaactagcg
     1501 ttgctggact ttttgccgca ggggacctta gaaaagatgc gcctaagcaa gttatttgtg
     1561 ctgcaggtga tggagctgta gctgcattaa gtgctatggc ttatatagaa agcttgcatt
     1621 aagattttat aaagttgcta aaagcaactt tatttttatt tagcttccta tcactccacc
     1681 atcaagtttt cttatcatca ttacacttga tcttggcgtt tttccataag gaaaagtact
     1741 acctttcaaa ccttctcctg gatgttgtat gcctacaaac attgtagtat aatcctcact
     1801 aaaagcaatc cctgttaatt cacaagcaat aggtcctgtt aaaaagcgtc tgatttcccc
     1861 tgtttttgga tttgctgcta gcatgcagtt atttcccatg ccttcgtatt catctttatt
     1921 agaataagat ccatctgttt gtatccaaag tcttccatct ctatcaaatt taagtccatc
     1981 aggagaattg aatttatttt cacttgtaat attatttgag cctttatata agccttgttg
     2041 gttatcagga tttccagcaa gagcaaaaat ttcccaagta aaatcatcgt ctttatgaga
     2101 attttttggc atccatttta aaatttgtcc ataaacattt ttagttctta gatttgctgc
     2161 attaggttct tggcgatttt tgttgttcgt tagtgttgca aatacttctt tagaaccact
     2221 ttgtttatgg cttgctatcc attcacatct atccatagga gttgcaccta caatgcttgc
     2281 agcaagacgc gtattgatga gtacttgagc ttgagactta aaaccatttt tttcatctag
     2341 gccgtttttg ccatattcta aggctatcca ttttccctgt cctttaaaat ctcccacatt
     2401 gccgttaaac tgtcctacat acaaagtgcc ttcatctaaa attttacttg tatcaacacc
     2461 ttttttgtat ttgtgtttgc taataaattt ataaataaat tcattcatct catcatcacc
     2521 catataaact ataacagaac catctttttc tacgataatt tctgcatttt catgtttaaa
     2581 acgccctaaa gaagttcttt taacaggtgt gctttttgca tcaaaaggat tgatttccac
     2641 tatccaacca aaacgattgg cttcattgat atttttagct aaatcaaatc tttcatcaaa
     2701 tttttcccat ccataaagac tagttttgtt aaatccatag cgtttaagag agtcattaaa
     2761 ttctagattt tcgtctgaac ttccaaaaaa atcgtcaaaa ttttcttcac aggtgatata
     2821 agttccccaa ggtgtttgtc catttgcaca atttgcaaaa gttccatgaa caaatttttc
     2881 attttttaaa acttcttttt tagctgctcc acttacttgc attttagtgt ttgcatcgat
     2941 tctgcggtta tacttagagt ctaaaaccac agtccaatca tcaccctttt tttcgatttc
     3001 taagatactc acacccacac tggcttgctc atataaaata tcttctttgc ttaaattttt
     3061 accatgatga ttaaacatga tttcaggatt tatatattca ttattaacgg ctaaaattcc
     3121 tctgtttttt gaaagtggaa aaaaactcat accatcatcg ttatctccaa aaaccaaatg
     3181 agcattttta actgcattca tatcgatgat tttattttca tcataaggtt ttgctttact
     3241 aaaaagtgga tcaccccaag aaattaaaac ctttgcttca taaccttgcg gtactataac
     3301 tttatcttgt gtgcttgcac taacagcttt aaaacctaac aaatccttat ccttaagcac
     3361 aacagcactt aaatttgaac ttgcaaaaaa agccaccata gaacctaaag ctgaaccttt
     3421 taaaaacaat cttctttcca tttgttttta ccccatatta aaatttaaaa caatggaagt
     3481 ataaaaatat ttggaaactt tttagaaact ttgatgaaaa atttaaattg aagaaaaaat
     3541 ttatacctag tttttcacta ggt
//
LOCUS       DAQSLY010000137         3494 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.138, whole genome shotgun sequence.
ACCESSION   DAQSLY010000137 DAQSLY010000000
VERSION     DAQSLY010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.138"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            62..589
                     /locus_tag="R2H98_001621"
     CDS             62..589
                     /locus_tag="R2H98_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HEE9024476.1"
                     /translation="MNKTALTKTYTKDIQNFCLNSKKIVLSLATISFSASCTHATLTP
                     EIETYEETNRHAKARSGFRSKSSNNETINNLQTSTKTISGTGNTLVIESGGTITISNG
                     GQQAVNFTQDSSTSTFLNQGTLIGGNNTASVQLGANGNNGVTIETFNNQGIIGNGSSK
                     FGVTVWGGVKITLNL"
     gene            850..>3494
                     /locus_tag="R2H98_001622"
     CDS             850..>3494
                     /locus_tag="R2H98_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024477.1"
                     /translation="MHWSDGIGINANVKTLKNTGTIQGFSAPIKSSGGTIETLINEGT
                     MKGESIGIYMSGGLVKTLINSGTINQNNSATWAAGIKLQNNSTIENIINTGSIRSNAF
                     GISVTGGKFGTLTIKDGGMVYGKYSAIGVGRSQTLGDLYIDGSSNNGTVSGIYSEEHG
                     ILLENNSQTQKIELKNGGIIKGNIDGIRLINSASLSGEMILSGEGSRVEGGRGAGILN
                     RSGKIEGSITIKDGATVTATSNRAIANSGSGSITGGITVSGKNTKLQGNIINIGNASI
                     GSDIKIEDGAKVEGGLVNQDNGSISGSVQVSGGSSIDSITNEGNGAISGSITVDKDSK
                     LDSITNTSTSSTGISGSITNNSDNKLEISNSGNIGGKIESTGSADMVISNSNGGTISG
                     GISSSGSGSTSISNSQGSTINNGITVSGSAQVEISNQGSVGKDENGNTVTNNGSGSVG
                     IKDWLVSTDKNTGKLNTVVIGGSRAFNVKVENITVDQSNVDLEELNDINNIISGVNQN
                     NIGNIGTNGSGEISLSYDPITGKLTTDFNLNASISGATFRSLISTTSRRSTFIDNVMG
                     NSMQSFALASSSKSQSIAMSEKGNLYADASDYIKSDLNNGSYGSNKEHSLFILPYTSS
                     QNVELSLNEESKGHTKGTIIGYSTLKDSGIYGVYAGYEDTKMGSTYFDINNRTYYAGL
                     KYFNTLFTTEKGQEVYIKAQGKAALIKNDLTEKIGNNEAKAEPNSYAYGVNTALGMNF
                     ISNKDIFSPEIGLAYEGGYTEAFSMKDTIGQATVKGGERTYANYLNLFSTKTSLTWFR
                     DWLPNLKTSVELGAKFNINPKVEAEARFGNIKVSDEFDLPRVQKFVSTSFIVPVNEAF
                     YFSLNYNGMFDKDGNTHTGFAQFNYL"
BASE COUNT         1284 a          476 c          679 g         1055 t
ORIGIN      
        1 gttttatatt atttttaaat ataaacaaga aaatataaat ataaaaggaa agggaatatt
       61 tatgaataaa actgcattaa ctaaaacata cacaaaagat atacaaaatt tctgtttaaa
      121 ttctaaaaag atagttttat ctttagctac tatttctttt tcggcaagtt gtactcatgc
      181 tacacttact cctgaaatag aaacttacga agagacaaat agacatgcta aagctaggtc
      241 aggttttcgt tctaaaagtt cgaataatga gactataaat aatttacaaa cttcaactaa
      301 aactataagt ggcaccggca atactctagt tatagaaagt ggtggaacta ttactatttc
      361 taatggtggg caacaagcgg tcaatttcac tcaagattct tcaacttcta cctttttaaa
      421 tcaaggaact cttataggtg gaaacaatac tgctagtgtt caactaggag caaatggaaa
      481 taacggtgtt accatagaaa cctttaataa tcaaggcatc ataggcaatg gttcttctaa
      541 atttggagta acagtttggg ggggggtaaa gataacccta aatctataat caataatttt
      601 agtaatagtg gaactattca ctctaatgct ggtgaaagta tttattttgg taacgccaat
      661 atattaagtt ttgttaatag tgggactatt aagagtaaac aaggcgcagg agtaaatata
      721 tctcaaggaa caagtatagg gaattttaac aatagcggaa ctattgaagg caagaaggtg
      781 ggtgtacgag ttaattcaac aataaatacc ttcgtcaata gcggtttaat tactacaact
      841 gtaaagggcg tgcattggag cgatggaata gggataaatg ctaatgtaaa aacattaaaa
      901 aatacgggaa ccatacaagg atttagtgca cctataaaat catcaggtgg aactatagaa
      961 acattgatca atgaaggcac tatgaagggt gaaagtattg gtatttacat gagcggaggt
     1021 cttgttaaaa ctcttataaa tagcggtacc attaatcaaa acaattcggc aacttgggct
     1081 gctggtataa aactccaaaa taacagtacc atagaaaata tcatcaacac aggatctatc
     1141 cgttctaatg cttttggaat atctgtaact ggtggtaaat ttggaacact taccataaaa
     1201 gatggaggta tggtttatgg aaaatactcg gcaataggag tgggtcgatc gcaaactcta
     1261 ggagatttat atatagatgg aagttcaaat aatggcacag taagtggaat ttatagtgag
     1321 gaacatggaa ttttattaga gaataactca caaactcaaa aaatagaact taaaaacggt
     1381 ggcattataa aaggtaatat cgatggtata agattgataa actcggcctc tttaagtgga
     1441 gaaatgattt tatctggcga aggttctagg gtagaaggtg gaagaggtgc tggtatattg
     1501 aatcgaagtg gaaaaataga aggctctata accataaaag atggagcaac tgttacggct
     1561 acttcgaatc gagccatagc taactctggc tcaggaagta taacaggtgg tattactgtt
     1621 agtgggaaaa acactaaact tcaaggaaat ataatcaata taggtaatgc ttctataggt
     1681 agtgatatca agatagaaga tggagctaag gtagaaggtg gtcttgttaa tcaagataat
     1741 ggaagtatct caggaagtgt tcaagtaagt ggtggtagta gtattgattc cattaccaat
     1801 gagggtaatg gagctatttc tggttcaatt actgtagata aagatagtaa acttgattct
     1861 atcactaaca cttctacatc atctacaggt ataagtggtt ctattactaa caatagtgat
     1921 aataagcttg aaatttctaa ttcaggtaat atcggtggta agattgaaag tacaggtagt
     1981 gctgatatgg tgattagcaa tagtaatggt ggaactatta gtggcggtat tagttcttca
     2041 ggaagtggaa gcactagtat ttccaattca caaggctcaa ccataaataa cggcatcact
     2101 gtttcaggat cagcacaagt tgaaatctcc aatcaaggct cagtaggtaa agatgaaaat
     2161 ggtaatacag taactaacaa tggtagtggt agtgttggaa tcaaagattg gcttgtttct
     2221 acagataaaa acacaggtaa attaaacact gtggttatag gtggaagtag agcttttaat
     2281 gtaaaagtag aaaacatcac cgtagatcaa agcaatgttg atcttgaaga gctaaacgat
     2341 ataaacaaca tcatctcagg tgttaatcaa aacaatattg gcaatatagg aaccaatgga
     2401 agtggagaaa tatctttaag ctatgatcca ataacaggaa agcttactac agattttaat
     2461 cttaatgctt ccatatcagg tgcaaccttt agatctttaa tctctactac ttcaagaaga
     2521 tcaaccttta tagataatgt tatgggtaat tctatgcaaa gctttgcttt agcttcttca
     2581 agtaaatctc aaagcatcgc tatgtctgaa aagggtaatt tatatgcaga tgcaagtgat
     2641 tatataaaga gtgatttaaa taatggaagc tatggttcta ataaagaaca ttctttattc
     2701 atccttcctt atacttcttc acagaatgtt gaactttctt taaatgaaga aagtaaagga
     2761 cacactaaag gaaccattat aggttattct actttaaaag acagtggaat atatggtgtg
     2821 tatgcaggtt atgaagatac aaaaatgggt tcaacttatt ttgatattaa taatagaacc
     2881 tattatgcag gtttaaaata ctttaatacc ttatttacta cagaaaaagg tcaagaagtt
     2941 tatatcaaag ctcaaggtaa agctgctttg attaaaaatg atttaactga aaaaatagga
     3001 aataatgaag ctaaagctga acctaattct tatgcttatg gagtcaatac agccttaggt
     3061 atgaatttta tttctaataa agatatattc tctcctgaaa taggtcttgc ttatgaagga
     3121 ggttatactg aagctttttc tatgaaagac accataggac aagcaacagt taaaggtgga
     3181 gaaagaacct atgcaaacta tttaaatctt ttctctacta aaacaagtct tacttggttt
     3241 agagattggt tgcctaattt aaaaacttca gtagaacttg gagctaagtt taatatcaat
     3301 cctaaagtag aagctgaggc tagatttggt aatataaaag taagtgatga gtttgattta
     3361 ccaagagtac aaaaatttgt aagcacttct tttatcgttc ctgttaatga agctttctat
     3421 tttagtttaa actataatgg aatgtttgat aaagatggca atacccatac aggatttgct
     3481 cagtttaatt atct
//
LOCUS       DAQSLY010000138         3484 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.139, whole genome shotgun sequence.
ACCESSION   DAQSLY010000138 DAQSLY010000000
VERSION     DAQSLY010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3484
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.139"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..96
                     /locus_tag="R2H98_001623"
     CDS             <1..96
                     /locus_tag="R2H98_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEE9024478.1"
                     /translation="FLAKKQLCFLYIPYKNKSFYLIKIIFKRTNQ"
     gene            93..1685
                     /gene="yidC"
                     /locus_tag="R2H98_001624"
     CDS             93..1685
                     /gene="yidC"
                     /locus_tag="R2H98_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEE9024479.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            1682..2500
                     /locus_tag="R2H98_001625"
     CDS             1682..2500
                     /locus_tag="R2H98_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEE9024480.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAKFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2493..>3484
                     /gene="mnmE"
                     /locus_tag="R2H98_001626"
     CDS             2493..>3484
                     /gene="mnmE"
                     /locus_tag="R2H98_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEE9024481.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILN"
BASE COUNT         1272 a          480 c          604 g         1128 t
ORIGIN      
        1 tttttagcaa aaaaacaact ttgtttttta tatatacctt ataaaaataa aagtttttat
       61 cttataaaaa tcatctttaa aaggacaaat cagtgaataa ttcaaataat atttttcagc
      121 aaaagcgtat acttttagct gttgtgatct cttttttatt ttttgttgtt tacgattatt
      181 ttttcattcc aaaacaacct ttaaaaatag aacaaaacat tacacaacaa aatcaacaaa
      241 acacaagcat aaataacact cctaatatac aaaataccac cacaaatact ccaagtgcag
      301 ctttagtttc acaagatagt gtgatatcta aggttcaaag caagcatttt gaagcacaaa
      361 ttgactcttt tggtagaatt tctgcttttt atttaaaaga taaaaaatac caaaatgaga
      421 aaggagaatt tataaatctt gttagcaagg aaaatagtcc ttatccttta gaaatgcgtt
      481 ttagtgatcc aagtattaac tcagaggctt ttaaaattcc ttatgttgct aacgctagca
      541 atctttttgt tgatgaaaat ggaagtcaag ttttaaaact cactcaaaat ctttctggat
      601 tgaaaatcga aaaagatatt actttttatc caaaaggaaa ttatgagata gaagttaaac
      661 tcagcaagaa tgcaaattat tttataagtc caggatatcg tccaaatatt gccgtagata
      721 gttatacagt tcatggtgct ttggtaatgg ataataaaga aaccatcgaa acttataaag
      781 atggagatgt agaaaaggat gaaagtgcta ataatgtcgt aatgacttcg gcttttgata
      841 gatactatgc aactttcttt tataattttg ataaaccttt aaatgtggca atcagcaagg
      901 atgctaatca aaaccctata gtttttgctt atagtgataa tgaatttaaa gcagggggct
      961 atataggctc taaagaacat gtgattttaa gaagtataga tccacgcctt gaagcagttg
     1021 ttgaatatgg ttggtttact tttattgcta agcctatgtt tgagtttttg aatttcttgc
     1081 atcagtatat aggaaattgg ggttgggcta tcgttgtgat gactttaatt gtgcgtatta
     1141 ttttattccc gctaacttat aagtctatga tttctatgaa taaacttaaa gatcttgctc
     1201 ctaaaatgaa agatattaga gagcgttata aaggcgatcc acaaaaaatg aatatgcaca
     1261 tgatggagct ttataaaaaa catggtgcaa atcctatgag tggttgtttg cctatacttt
     1321 tacaaattcc tattttcttt gctatttatc gcgttttgct taatgctatt gagctaaaag
     1381 cagctccttg ggcgttttgg atacatgatt tatcggtaat ggatccttat ttcattttgc
     1441 ctattttaat gggtgcaacg atgtttttac aacaacttat tacacctatg actatacaag
     1501 atcctatgca agctaagatt atgaaatttt taccagtgat ttttactttt ttctttatca
     1561 ctttcccagc aggacttacg ctttattggt ttgtaaataa cctttgttct ttggttcaac
     1621 aatgggttat caataaaata tttgctaaag aacatcacaa aaaacaagcg gagcatgaaa
     1681 aatgaaaatc gaagccattg atcttcaaag tgccttaaca gaagcttcaa gaagtttaga
     1741 atgttccgtg atggacttag aatatgagat tattcagcat ccaagaaaag gtttttttgg
     1801 atttggaaga aaaaaggcaa ttatagaggc taaagcaaaa aaaaggattt tgaaaaaaaa
     1861 tcctaaaaaa gaatttacaa gttcaaaaaa tcacaaacca gaaacacatg agccaaaaca
     1921 agaaaacaag attgaaacaa aaaatgaaaa aaataaaagc caaaaagaaa aatatacagt
     1981 aaaaagtgat gaaatttttg atagttttca tcgagaaagc aaaggagtgc gtaatactca
     2041 ggatatttta gatgagattc gcattcagct tgtaaaactt ttagaaagct cccagtttaa
     2101 aatagagctt agtgaactta gaatgtatga tgaagattgc gttttgattc gattggatgg
     2161 ggaagatgct gctttgatga taggtaaaga agcacatcgt tacaaggcta tttcttatct
     2221 tttacataat tggatcaatt taaaatataa tcttttagtg cgccttgaga tcgctcaatt
     2281 tttagaaaat caaattcaag gtatgcagct ttatttacaa aacgtgattg aaaaaattaa
     2341 aattcatgga cgcggacaaa ccaaaccttt ggatggggtt ttgataaaaa tcgctttaga
     2401 gcagttaaga gctaaatttc cagataagta tgtaggaatt aagcaaaata atgatcaaag
     2461 atttgttgta ataaacgact ttttcaaaaa agatgagtga tactatagcg gctattgcca
     2521 cagctcatgg tgtgggttcg atttctattg taagattaag cggtgaaagg gctttagaat
     2581 ttgccttaaa gcttagccac aaaaccaaac ttaccccacg ccatgctact tttacaaaac
     2641 tttttaatca aaataatgaa attatcgatg aagctataat gatatatttt aaagcccctt
     2701 atagttttac aggggaagat atagtagagt ttcaaactca tggaggattt agtgtgagtg
     2761 aagttttact cgaagaactt gtgagtttag gagcaagact tgctttagca ggggaattta
     2821 gcaaaagagc gtgtttaaat ggcaaaatga ctcctttaaa agctttaaat atacaagatc
     2881 tcatactttc aaaatctgca cttgcagcta aaattatagc acgcaacatg caaggaaact
     2941 taggagaact tttagaaaaa attcgcacag atttggttaa aactttagct tttgtagaaa
     3001 ctagtattga ttatgctgat gatgatttac cttctgattt attagaacaa atttctacta
     3061 tgtgtgaaga aaattctaaa attttaaaag aaatttatac gctttctcaa agcaaaaaag
     3121 gactcataga aggttttaaa atcgctattg taggtaagcc aaatgtaggc aaatcttcgc
     3181 ttttaaatgc cttgctttct tatgaaagag ctattgtttc agatatagca ggcaccactc
     3241 gtgatactat agaagagagc tttaaattag gaacgcattt attacgcatt atagatacag
     3301 cgggtattag ggaaagtaaa gatgttatag aacaaatcgg cgtagcttta agtaaaaaaa
     3361 gtttagaaga tgcagatatt attttggcag tctttgatgc ttcaagagtg caagataaag
     3421 aagatgagaa aatttttgac ttattagcaa atactgataa aaaaatcttt tggattttaa
     3481 ataa
//
LOCUS       DAQSLY010000139         3328 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.140, whole genome shotgun sequence.
ACCESSION   DAQSLY010000139 DAQSLY010000000
VERSION     DAQSLY010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3328
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.140"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..835)
                     /locus_tag="R2H98_001627"
     CDS             complement(<1..835)
                     /locus_tag="R2H98_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEE9024482.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKIYEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AK"
     gene            994..1932
                     /gene="rsmH"
                     /locus_tag="R2H98_001628"
     CDS             994..1932
                     /gene="rsmH"
                     /locus_tag="R2H98_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEE9024483.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLGHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            1932..2870
                     /locus_tag="R2H98_001629"
     CDS             1932..2870
                     /locus_tag="R2H98_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024484.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKGENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKGLTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(2858..>3328)
                     /locus_tag="R2H98_001630"
     CDS             complement(2858..>3328)
                     /locus_tag="R2H98_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024485.1"
                     /translation="SLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLNFNFKILN
                     SYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFKVYTRKII
                     SKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKIIHSK"
BASE COUNT         1341 a          472 c          427 g         1088 t
ORIGIN      
        1 ctttagcaac ttcattttta gcagactgaa aatccatcac tttacctgca aaatctttat
       61 attttagttt attttcatct tgattataaa atttttctaa ttctttgtcg tcaattttct
      121 cattgctaac tggcaaaaaa taagttgaaa tttcatatat ttttttagtt ttataatctt
      181 ctttatgttc attccaaagc ttttttaaat cctcttcgtt aatcttaata ttttttttgt
      241 cataatcaat ttttgcaata cttaaagcat cttgcataaa ataactagaa gctaacattt
      301 ttaattcctc atctttgcta ggaatattaa aaatttgatt aagtttatcg gtaattactt
      361 catttgcaag ttgtgtttca taatcttttg gagctaaatt attggcattt aaaagttcat
      421 aataaattgt tttgttaaaa tcccctgtag gatcttgaaa ttctctagta tttgcaagtt
      481 tttgtaaaat ttcattctcg tttacaccaa tacccaaatc tttggcaaaa tttaacaaaa
      541 gcttatcttc aacaagagag cttaaagcta tatttttaat gcctagttgc tcagcatttt
      601 ctggagttaa agcaccattg ctaatttgat tataataact taaaatttgt ctatatctag
      661 tatcaaattc gctaaaacct atcttttcat ttcctacagt tgcaacactc gaacttctat
      721 tgagattaaa atcataagca ccccaaccta aaaagccagc gccaacaaaa gctatagtac
      781 taacccatat agtaacaaca agatattttt tgtgatgttg catccaagta agcatatcat
      841 tccttgatta aatttaaact agatattgta tcgtagaagt gtttaagtgg agtttaatta
      901 taaaattttt accaaaaaat atttgttctt taaattttat gatttttaca atgaaattta
      961 gttataatta tagtttataa aaatttatta ggattgattt tggaaattcc tcatatccca
     1021 gttttgctta atgaagttca agagattttt aaaaatctta aaacaggtta ttttttagac
     1081 tgcactttag gatttggcgg acatagtgaa gctttgctta aaaatcatcc tgatcttaaa
     1141 ttcattgctt gtgatcaaga tcaacaagct ttagaatttt ctaaaaaacg tcttaaagat
     1201 tttcgcaata ggataacttt tatgcaaagt aattttagtg aagttttaga aaaaatttca
     1261 cataaagaag aattaagagg tattttagca gacattggag tttcttcatt tcagcttgat
     1321 aataacgaaa gaggttttag tgtaaattct gactttttgg atatgagaat gaatcaaaac
     1381 tccaaaatat cggcttatga gattattaat acttatacaa aagagcaatt aacttccatt
     1441 tttaaagatt atggagaatt acatgatgca cattttattg ctgaaaaaat ttgcctagaa
     1501 agaagtaaaa atccaatcaa aagtgccaaa gagctttatc aaatcatagg aaaaggtaaa
     1561 caaaatcata gaaaaatttc caaagctact ttagcatttc aagccattag aatagaagta
     1621 aatcaagaac ttaaagtgct taaagatttt cttgggcatt tagaaaattt aaaaccaaaa
     1681 aattgcattt tagctatcat tagctttcat tctttagaag atagaatagt aaaacaattt
     1741 ttcaaaaaat ggtcaaaaaa ctgcatttgt aatgaaaaaa taatgcgttg cgaatgtgga
     1801 aataaccata gcctaggaca aataataact aaaaaagcta taagtgcgag caaggaagaa
     1861 cttttaaaaa attctcgctc tagttgtgct aaaatgcggg ctttttattt taataatttg
     1921 gataataaat aatgctagaa gatgatttta taaaagaacg ccaaaacata cgccaaaaaa
     1981 tgctgaaatt ttctcgcgcc ataaatcaag gcaaaccgct tgatgatgat ttaagagatg
     2041 aaatttctag cgatgatatt ttaagacgtc gttttaaaaa aaagactcct aataaattct
     2101 tagaagaact cgatgaagag tatgagtcaa aacatactaa aaaatcaaat atatatttaa
     2161 aagaagatct aatcaatgtt aaattagaag aaaagcaatc tcttgctaaa aaaatttttt
     2221 ccaaaatgaa agaaagaaga aaaggagaaa ataaaaaaac taaaaaaaat tttttattta
     2281 gcagaaaaaa agcaaacgaa ataaaaaata tccaaaccaa aacacaaatt caaacaaaaa
     2341 gcaatcaagc taccactcaa acaaaacaag aaaaaaaggg acttacaaat tctatagaaa
     2401 aaattcaaaa aacagaaact aaaatacaaa aacccctaat tatagaaaaa aaactagatg
     2461 ttaaaaatca acctaatatc aagaaaagtt tagaaaattt acaaaaaaaa ataacaccac
     2521 aagaaaataa acaagaactt ccaaaaccat ctaatcaagc tcaagaaaaa caacaaaatg
     2581 atgaagatgc tcaaaaggca aaaaatattt tactagaagg cttctctaat gctaccaaag
     2641 aagatagaaa cctaaacttc aatcatcttc tttttgcagc tttacttgtt agttttgcat
     2701 tatttttatt tgccccacaa atttatatta gaaatcaaat ttattatctt agtagagaga
     2761 ttgctacatt aagaacagaa gaaagtgttt taaacgagga aaataaagac ttaaaaagaa
     2821 gacttgaaaa tatgcgattc caaaatcaaa ttttagatta tttagaatga ataatcttat
     2881 ctaaaacata ctgctctaaa tttgcttttg gaatttcttc ttttaaagct tctttataaa
     2941 attcacccgc cattgtagag tacttttcat aagcaaaata aggaaagtgt aaagcccagg
     3001 ctttttgtat tatttttttt gagattattt tgcgagtata aactttaaaa atatcatatc
     3061 ctataaatac acaagcagta accataacag cgctcactat gcttatatga aagtcaagct
     3121 ttgttaaaaa ataatgagta atcaaaagca atggcaataa aatcacagcg caaaaaacac
     3181 caaaataaat ataagaattt agaattttga aattaaaatt tagcttagaa ggatctacaa
     3241 gcattccatc gttaaaaagt gcatttgcct ctaataaatc tcttataaga acaggttgct
     3301 ctgatacttt aaataaaaaa cgaaggct
//
LOCUS       DAQSLY010000140         3312 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.141, whole genome shotgun sequence.
ACCESSION   DAQSLY010000140 DAQSLY010000000
VERSION     DAQSLY010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3312
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.141"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..237
                     /locus_tag="R2H98_001631"
     CDS             <1..237
                     /locus_tag="R2H98_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OST-HTH/LOTUS domain-containing protein"
                     /protein_id="HEE9024486.1"
                     /translation="LRALINITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNF
                     RALIQKFLPKMKKFEEEREKNIYFLVKKDYESYY"
     gene            221..1591
                     /locus_tag="R2H98_001632"
     CDS             221..1591
                     /locus_tag="R2H98_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEE9024487.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITLCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDEDLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            1582..2148
                     /gene="purN"
                     /locus_tag="R2H98_001633"
     CDS             1582..2148
                     /gene="purN"
                     /locus_tag="R2H98_001633"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEE9024488.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            2220..2939
                     /locus_tag="R2H98_001634"
     CDS             2220..2939
                     /locus_tag="R2H98_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEE9024489.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            2932..3141
                     /locus_tag="R2H98_001635"
     CDS             2932..3141
                     /locus_tag="R2H98_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEE9024490.1"
                     /translation="MAKDTNGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            3151..>3312
                     /locus_tag="R2H98_001636"
     CDS             3151..>3312
                     /locus_tag="R2H98_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEE9024491.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVK"
BASE COUNT         1221 a          384 c          585 g         1122 t
ORIGIN      
        1 ttaagagctt taatcaatat caccgaacaa cttatcgatg aaaaagggcg tgccgaatac
       61 gcacaaatcc gtactaatat gaaccgcaaa tactcggatt ttcatccgca aaattatggt
      121 tttaagaatt ttcgtgcttt gatccagaaa tttttaccca aaatgaaaaa atttgaagaa
      181 gaaagagaaa aaaatatata ttttttggtg aaaaaagatt atgaaagcta ttattgataa
      241 tataaaaatt ttagaacaaa atgctataaa taaaggctta gatgagctta ttttaatgga
      301 aaatgcggga ttaaatttag ccaagctaat taaaaaagaa gctaaaaaaa ttcgcattca
      361 acgcaagatt agaaaagtaa aaatactttt tttattaggc gggggtaaca acgcttcaga
      421 tggcttggtg gctttaagaa atttaaaaca cgctaaagct tataaaatag gctttaaaga
      481 aaatacgctt tttaaaaaac aagagcaaat tttacaaaat tatgctttta aattttgtaa
      541 aaaagaaccc aattttaaaa aatttcatat tatcattgat tgtattttag gtacaggttc
      601 aaatcgttgt ttagatgaaa aaacaagttt aattattcaa aaagttaatc aaagtaaggc
      661 tttaaaaata gcttgtgata tacctacaaa tttgggattt tatccttgtt ttaaagctga
      721 tattacactt tgtatgggag ctttaaagga aattttactt gaagattttg ctaaggaatt
      781 tgtaggaagg attaaaatag ccaatttagg cattagatct aagaaatttt accctaattc
      841 tcaagctttt ttgcttgaaa aaaaagattt aaaaactata gatagaaaaa tcaacgccaa
      901 taaaggaaat tttggccata tttatatagt tgccaatgca agtgctggaa ctttagcagg
      961 acttggagcc ttaaattttg gagcaggtct tgtttcttta gtagcacaaa aaagtttctc
     1021 gcctcttttg atgttaaaag aaaaaattga aaataatgca agtgctattg ctttaggtat
     1081 ggggcttgaa aatttggatt ttctaaaaga tgaaattttg caaaacactc ctttgatctt
     1141 ggatgcaaac tgctttttaa gtgaagcttt gctttggtat ttaaacagaa aagatgttgt
     1201 tataacccct catccaaaag aatttataaa actttataaa atgtgctttg atgaggattt
     1261 agatatagaa acattgcaaa aaaatcgctt tttctatgct agaaaatttt cgcaaaatta
     1321 tgattgtgtt cttgttttaa aaggagcaaa tcctattatt gtgcaaaaag aaaaattatt
     1381 tgttgtaaat ttaggaaatc aagccttagc taaaggtggg agtggagatg ttttaagtgg
     1441 aatgattgct gcacatttag gttttggttt tagcgcttta gaagcagcaa aaaatgctac
     1501 tttagctcat ggacttgttg caaaaaaata taaatttaat aaaaatagct ttgacgcttt
     1561 aaaacttatc aaaggattaa aatgcttgta aaattagctg tactttttag tggaaatgga
     1621 agtaatttag aaaatatttt agaaaaactt cataaaaaaa ccatagggga aaatacctat
     1681 gaagtagtac tttgcatttg taataaaaaa gatgcttttg gtgtacaaag agcaaaaaaa
     1741 tttggtcttg atactgtcat tgttgatcat aaggcttata atactcgtga agaatttgat
     1801 acgattttgg tacaaaaaat caaagaaagt ggagcaaatc ttactgtatt agcaggtttt
     1861 atgagaattt taagtcctgt ttttacaaaa aatattaagg caattaacct tcatccttct
     1921 ttattacccc tttttaaagg agcacatgcg attaaagaaa gttatgaaag tgatatgaaa
     1981 gtggctggag tcagtgtgca ttgggtcagt gaagaacttg atggtggaat gattatagct
     2041 caaaaagctt ttgaaaaaag aaatttgagt tttgaagaat ttgaagaaaa aattcatagt
     2101 ctagaacatg aaattttacc cttaagtgtg attgaaattt tttcttaaag aattaaaggt
     2161 atttgcttta aaactataaa atatcgcttt aaaaaatttt aaaattttca aggaaattta
     2221 tgtttgaatg gatatttagt attgatgctt ggattacttt agctacttta agtgctcttg
     2281 aaattgtact agggatagat aatatcattt ttttagctat tttagtaagc aaactacccc
     2341 ctgaacatcg tgataaagga cgtatcttag gtttagcttt tgcaatgatt acaagaattt
     2401 tacttctttt atctcttttt tgggtaatga aacttgtaac acctttgttt agtgtattgg
     2461 gcaatgaaat ttcaggaaga gatctagttc ttttactagg tgggcttttc ttgattgtaa
     2521 agtctattaa agaaattaaa gagcaaattt ctcatcaaga agaaagtcaa agtcatttta
     2581 aagcaagcaa taaactttgg atagttgtag ctgaaattgc tgtgattgac atagtgtttt
     2641 cgcttgatag tgttattacc gcagtaggaa ttgctcaaga tgtaaccatc atgattatcg
     2701 ctgttattat cgcagtagct gtgatgcttt ttgcttctaa acctatagca gattttgttg
     2761 aaaaatatcc aagcattaaa attttagcct tagctttttt ggtgctaata ggcgtagttt
     2821 tagttgctga aagttttgat attcatattg ataaggcata tatttatacc gctatggctt
     2881 ttgctttagt ggtgcaaatt ttaaatattt tagatcaaag aaaggaaaaa aatggctaaa
     2941 gacactaatg gaatagaact taacacaggt gatagcgtga gtgtaataaa agatcttaag
     3001 gttaaaggtg caagtacaac tttaaaacgt ggaactacta taaaaaatat taagctcact
     3061 tctaaagaag gtgaaattga ggctagagta gataaatttg gcgttattgt tttaaaaact
     3121 gaatttttaa agaaaatcta ggcaaagaat gtgcgaatct tacttgtttt aagagggaat
     3181 tattacgcag gacaagaaga atttatcaaa aataataaac ttcaaaatta tacacttgat
     3241 ttaaatgctt tgcgtctttt atcaggaagc gttaaaaata tagtcagtga atataaaatt
     3301 ttaaatgtta aa
//
LOCUS       DAQSLY010000141         3307 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.142, whole genome shotgun sequence.
ACCESSION   DAQSLY010000141 DAQSLY010000000
VERSION     DAQSLY010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3307
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.142"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            72..404
                     /locus_tag="R2H98_001637"
     CDS             72..404
                     /locus_tag="R2H98_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEE9024492.1"
                     /translation="MKKYHSLCPIETTLNLIGNKWKILIIRDLLQGTKRFGELRKSIS
                     FTKNQNISQNVLTQNLRELEEAKLIKRKVYAEVPPKVEYSLTSLGNSLESILKSLENW
                     GNSYKNIV"
     gene            489..1436
                     /gene="arsP"
                     /locus_tag="R2H98_001638"
     CDS             489..1436
                     /gene="arsP"
                     /locus_tag="R2H98_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
                     /protein_id="HEE9024493.1"
                     /translation="MQSFLNTFKEFLYLFTELSVLFIAISFLVSIINQKYEGIFKKQL
                     AGDKISSYFKAIFLGALTPFCSCSTIPLLRAFLEAKVKLSIALAYLFTSPLINPIIFS
                     MLFVTFGLKLSLIYVVFLIFLIFIISFVFSKFKEDSFLKHIPKNTKSSIFTQSAHNPS
                     NFIFKQKSCCANTQDKSKNITINYKELFKESLKNYKKLLPYIVVAVFIGAFIHGFIPQ
                     EILQKYLNGNEILSIALAAFLGIFLYLRVETIIPIGLALLQMGISQGVIMSFLIAGAG
                     CSLPELVLLKQMFKMKFLFLFVMIILGVAISFGIFINLI"
     gene            1446..1742
                     /locus_tag="R2H98_001639"
     CDS             1446..1742
                     /locus_tag="R2H98_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEE9024494.1"
                     /translation="MQKFLTIISAINDESRILILHHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINNELLKLHLDLFENIKSLELKNVIKKK"
     gene            complement(1778..2209)
                     /locus_tag="R2H98_001640"
     CDS             complement(1778..2209)
                     /locus_tag="R2H98_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEE9024495.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLYKFKG"
     gene            2289..>3307
                     /locus_tag="R2H98_001641"
     CDS             2289..>3307
                     /locus_tag="R2H98_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEE9024496.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVVFSVILLYFIVSKYLSPLAAIQTGLTSFFDFI
                     NYKTK"
BASE COUNT         1164 a          448 c          417 g         1278 t
ORIGIN      
        1 ttattttagt attttaatga gataaatttt tttaaaaaat atgttataat tttaaaaaat
       61 aaggatttat aatgaaaaaa tatcattctc tttgtcctat tgaaaccacg cttaatttga
      121 taggaaataa atggaaaatt ttaattattc gagatttgtt gcaagggact aaaagatttg
      181 gagagttaag aaaaagcatt tcatttacaa aaaatcaaaa catctctcaa aatgtcctta
      241 cacaaaattt acgagaatta gaagaagcaa aactgatcaa acgcaaagtt tatgcagaag
      301 ttcctccaaa ggttgagtac tcacttacat ctttaggcaa tagtttagaa tccatcttaa
      361 aaagtcttga gaattgggga aatagctata aaaatatcgt ttaagtaata aattaatata
      421 tcaatatata ttaatttatt aatttataca tgttatattt tttggaaata tttttaaaag
      481 gataaaaaat gcagtctttt ttaaatactt tcaaagagtt tttatatcta tttactgagc
      541 tttctgtact ttttatagct atttcttttt tagtttctat tatcaatcaa aaatacgaag
      601 gaatttttaa aaaacaactt gctggtgaca aaatttcaag ttattttaaa gctatatttt
      661 taggtgcttt aacgccattt tgttcctgtt ctaccatacc gcttttaaga gcttttttag
      721 aagcgaaagt aaaacttagc atagctttag cttatctttt tacttcgcct cttattaatc
      781 ctattatttt ttccatgctt tttgtaactt ttggtttaaa gttaagtttg atttatgtgg
      841 tttttttgat atttttgata tttattattt cttttgtttt ttctaaattt aaggaagata
      901 gttttttaaa acatattcct aaaaatacaa aatcaagtat ttttacccaa agcgctcaca
      961 atcctagcaa ttttattttt aaacaaaaat catgctgtgc aaatactcaa gataagtcta
     1021 aaaatataac gataaactat aaagaattat tcaaagaaag tttgaaaaat tataaaaaat
     1081 tattacctta tatcgttgtg gcagttttta tcggtgcttt tattcatggt tttattcctc
     1141 aggaaatttt acaaaaatac ctaaatggca atgaaatttt aagcattgca ttagcggctt
     1201 ttttaggaat tttcctttat ttaagagtag aaactattat tcctataggc ttagcacttt
     1261 tacaaatggg aatttctcaa ggagtgatta tgagtttttt aatcgctggt gctggatgtt
     1321 ctttacctga gcttgtttta ctcaaacaaa tgtttaaaat gaaattttta tttttatttg
     1381 ttatgattat tttaggcgtg gctatatctt ttggaatttt tattaattta atttaaggaa
     1441 ataaaatgca aaaattttta accattattt cggcgatcaa tgatgaaagt aggattttga
     1501 ttttacatca tcttttaaga tacaaagaac tttgtgtttg tgatctacaa gagctcttaa
     1561 acatgggtca atcaagactt tcaagacatt taaaaatttt aaaagatgca ggttttttgt
     1621 atgtaaggcg tcaaggaact tgggcgtatt atgggattaa taatgagctt ttaaagctgc
     1681 atttagatct ttttgaaaat atcaaaagtt tagagcttaa aaatgttatt aaaaaaaaat
     1741 gaaaatatta ttacccaaat ttgcccttaa tataaaatca acccttaaac ttatacaatt
     1801 tatcacaagg ttgatagtcc ttgctttctg gattaaaccc atcgacttca tttgcaagca
     1861 tttcttcata aatttttatc tttttgctta aaactttttc actttctttt aatgttttaa
     1921 tctggttttg taattttttc tttgtttgct ttaacatctc ttgtctttct ttagcagttt
     1981 ttatacccaa agagcaaagt tttatataat gtttgatttg ttctattggc atacctgaaa
     2041 ttctaagcca ttctatccat tttacccatt ctatatcgct ttttgaaaaa tatttcacac
     2101 tattttcatc tttttgaaca aaaggaaaca aacctttttt agcccaaaat cttaaagtat
     2161 gagcactaat ttttgtttct ttttctactt tttttatagt ataagccata ttttctcctt
     2221 tatttaagat aaaaataaaa atttatttta tttttttgtg ataaaataat agccaaatta
     2281 ttagttttat gctaaaaata acaaagatta aaaggaaaat aatgaatagt attaaaatca
     2341 aactttccct cattgcaaat ttaattgcaa tttttgcctt aattgttcta ggtattgtaa
     2401 gtttttattt tacaaaaacc tcactatatg aaagcactct taaaaatcaa actgatctac
     2461 ttaaagtcac acaatctacc gttgaagatt tccgttccac aaatcaatct tttactagag
     2521 ctttagaaaa agatatcgcg aacttacctt atcaatcttt aatcactgaa gaaaatatta
     2581 ttaacaatgt tggtccaata ttgaaatatt atcgtcatag tataaatgca ctaaatgttt
     2641 atttaggttt aaacaatgga aaagttttac ttagtcaaaa atctaatgat gcaaaaatgc
     2701 ctgaattacg tgatgattta gatataaaga caaaagattg gtatcaagaa gctttaaaaa
     2761 caaatgatat ttttgttaca ccagcatatt tagatacagt tttaaaacaa tatgtaataa
     2821 cgtattctaa agctatttat aaagatggta aaatcatagg ggtactgggt gtcgatatac
     2881 catcagaaga tttgcaaaat ttagttgcaa aaacccctgg aaatactttt ttatttgatc
     2941 aaaaaaataa aatatttgca gcaaccaata aagaattatt aaatccatcc attgatcatt
     3001 ctcctgttct aaatgcatat aaactcaatg gtgataacaa cttcttctct tataagttaa
     3061 ataatgaaga aagacttgga gcttgtacta aagtctttgc ttatacagct tgtattaccg
     3121 aaagcgctga tattataaat aaacctattt ataaagctgc atttattcaa gccattgttg
     3181 tcattattgt agtagtattt agcgtcatcc tcctttattt catcgtatca aaatacctct
     3241 ccccacttgc agctatccaa acaggtttaa cttcattctt tgattttatc aactataaaa
     3301 caaaaaa
//
LOCUS       DAQSLY010000142         3251 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.143, whole genome shotgun sequence.
ACCESSION   DAQSLY010000142 DAQSLY010000000
VERSION     DAQSLY010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3251
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.143"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..238
                     /locus_tag="R2H98_001642"
     CDS             <1..238
                     /locus_tag="R2H98_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024497.1"
                     /translation="LDEISKNLNNIKLSMDDKAKIYLAKKAYNKEFGVRLLKRIISEE
                     IGEKISDEILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            213..860
                     /locus_tag="R2H98_001643"
     CDS             213..860
                     /locus_tag="R2H98_001643"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEE9024498.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(882..2171)
                     /gene="cetZ"
                     /locus_tag="R2H98_001644"
     CDS             complement(882..2171)
                     /gene="cetZ"
                     /locus_tag="R2H98_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEE9024499.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGYVYKIIKFANDITQRHYEMLDLKNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLRLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2252..2878)
                     /locus_tag="R2H98_001645"
     CDS             complement(2252..2878)
                     /locus_tag="R2H98_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEE9024500.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMFRKKLF
                     RTILYTAFTIVLVFLSSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(2893..3219)
                     /locus_tag="R2H98_001646"
     CDS             complement(2893..3219)
                     /locus_tag="R2H98_001646"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEE9024501.1"
                     /translation="MLNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSEDKFKSGCG
                     WPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCVNSISLE
                     FVKTKD"
BASE COUNT         1190 a          560 c          381 g         1120 t
ORIGIN      
        1 acttgatgaa atttctaaaa atttaaataa tataaaatta tcaatggatg ataaagccaa
       61 aatttattta gctaaaaaag cctataataa agaatttgga gtaaggcttt taaaacgcat
      121 aatttctgag gaaataggag aaaaaatcag tgatgaaatt ttattcggaa agcttaaaaa
      181 aggcggtata gctaaaatca aacttggtaa aaatggaaag ctcgaattta tattctaaat
      241 tactcaatgc acctaaaaat gctcctgtat ttttaagtca aaatttagaa gctgatttta
      301 ttgtaaaagc ttatactttt ggtctattcc catggacaag taaacctgta acttggtggt
      361 gtccagatcc tagatgcatt ttaattccaa atcaaattca catccaaaaa aatatgaaaa
      421 aatttattaa tctctatcaa attaaacttg attatgattt tttaaaatta attacattat
      481 gtcgcgatac acgctctcaa agctggatag atgatgaatt tattaccact tattataagt
      541 tatttaccca aggctatgcg catagccttg aactttatga aaataatgaa cttataggtg
      601 gaatttatgg tttaatttta ggcaaggttt tctttggtga aagcatggta agcattaaaa
      661 aaaatgcatc taaagttgcc atgattaaac tttgtgattt attaaaacct tatgatttta
      721 tcatagattg tcaagtttat aaccaacatt tagaatttat gggtgctcat aatatttcta
      781 ggaaagaatt tttaaatatt ttaaaagaaa aatgcaatca agaaagtggt tttaaaaatt
      841 ttaaagattt aattacttaa aaataagcgt gaaaatcacg cttatgacat cgctttagca
      901 acttcagcag agctttcacg aattttctcc atacactctc ttgcttcttt tgcaagttca
      961 acactctgat taacatcctc taaaccgctt ttaatactct caaccacttg tgatgtaaca
     1021 ttacgaatag aattaatcgt agtggtaatt tcattaaccg aatgccctgt tctttcagct
     1081 aaatttctta cttcatcagc aacaacagca aaacctctac catgttcacc agcacgtgct
     1141 gcctcaatag cagcatttaa agcaagcaga ttagtctgat cagcaatatc actaatagtt
     1201 tgaataatag atttaatttc atctgattgt tgatttaaag aggaaacaag atttgaactt
     1261 tgagacatca tatcagcaat attctgaaca tttgaaacag tgttttcaat tacacgatct
     1321 ccatcttgag taagattatc atttttttct gcaagttcgc ttatgagacg aagtttttct
     1381 tgatcttttt taacttgttc gcttatatct gtagcaaatt taataacctt gtaaattttt
     1441 ccatcatcat ttttaaccgg attataactt gcttcaaggt atactttttt attatttctt
     1501 ccgtatctta tatatttacc tgattgaaat ttaccctctc ttaaatcttc ccaaaattga
     1561 acatagtcct tagagtgtct ataattagaa tcacagaaca tactatgatg ctttccttta
     1621 atctcatcaa tattaaaatc catagttctt aaaaaatttt cattagccgt aataatagtc
     1681 ccatcaggtt taaattcaat aatagccata gaacgattag cagcagcaat agtattttta
     1741 agatcaagca tttcataatg tctttgagtt atatcattgg caaatttaat aattttataa
     1801 acataaccat tattatcact aattggaaga taatttgctt ctaaataaac atctatccct
     1861 cccttagcta tacgtctaaa aagaccactt ctagcttttc catctcttaa atctttccaa
     1921 aaatcactat atgctgaaga attaacaact tcaggcaaac aaaacatact atgatgctta
     1981 cccttgatct ctgaaaggga gtatttcata gttgttaaaa aattttgatt tgcctctaaa
     2041 ataacgccat cggtagtaaa ttcaattacc gccatggtat tcccaataga tcttaaaata
     2101 tctcctaaac cattacattt tttttcaagt tgttcaatta ttttagtatt atttttctta
     2161 gcaccaaaca taaaactcac ctttttaata ataaattatt ttaaaattat atcatattta
     2221 tatagtatta tttacttaaa attatattaa tttataagtt aaatatatcc tttaaaccta
     2281 caataatcat cttaaacccc atagcaacaa taaatacttg tgctatacga gaaaaaacat
     2341 gtaaaatcaa ttttccaact attttttcta tagtagctgc aaaatgaaaa agtataaaca
     2401 taaaaataaa agctatcatt actccgccaa gagcaacatc aagcccacca tcttcggcta
     2461 taacaataac gctagctaaa gttccaggcc caacaagcat aggaaatgcc ataggtatta
     2521 aactctgtct taaaatttcc ttatcatcca tatcttgata agaactaaaa tccttagttg
     2581 caatttttgt tgaaaaaagt aaatttttaa tagccattat aataagaacc aaaccaccag
     2641 aaacccttaa atcatccaat gaaactctaa aaatatagtt cataaataaa ggtcctgatg
     2701 ataaaaacac caaaactata gtaaaagctg tatagagaat agttctaaaa agtttttttc
     2761 gaaacattaa aggcaatcca tcactcatag ccaaaaattg agttaaatta ccaaaaggat
     2821 ttaatatagc aagtaaagta attgcagcaa aaaacatcaa ataaagctca gaacccatac
     2881 tagaaaacac tatcaatcct tagtttttac aaattccaaa gaaatagaat ttacacaatg
     2941 tcttacattt ttagcagaaa atccttctcc ttcaaaaaca tgacctaaat gtccattgca
     3001 atttgcacat acaatctcgg ttctaatccc atctttatca ggaattcttt taacagcccc
     3061 ttttatttca tcatcaaagc taggccatcc acaacctgat ttaaatttat cttcggattt
     3121 ataaagcgaa gctccacatt gcttgcattg atagattcct ttttcataaa aatcattata
     3181 tttcccacta aaaggagctt ctgttccttt atttaaaatt actttttttt cttcttcatt
     3241 taattctttc a
//
LOCUS       DAQSLY010000143         3245 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.144, whole genome shotgun sequence.
ACCESSION   DAQSLY010000143 DAQSLY010000000
VERSION     DAQSLY010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3245
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.144"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(27..1958)
                     /locus_tag="R2H98_001647"
     CDS             complement(27..1958)
                     /locus_tag="R2H98_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEE9024502.1"
                     /translation="MALIDLIEASKKFGDKIVLNEANFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRVIRQNGKSIAMLSQTVDFNANLSVKEAIKQELAEIYNALEEYE
                     ILHKKLEEEPNNKDYLKKIDTLMTLIDSKDAWNIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINDKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGDGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNYPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(1962..3209)
                     /locus_tag="R2H98_001648"
     CDS             complement(1962..3209)
                     /locus_tag="R2H98_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEE9024503.1"
                     /translation="MALIFGFIFYTFTNSYLNFLLTKQYEQKIKSLDDVLKFSLLEHL
                     NDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILNFNSKKILTKSFIYK
                     GYKYIIIVYPRFLDLELFWIKIAIGFGVCLLFVFILMLLLGRRIEKNFNKILDFLDSI
                     SDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQLASVISAI
                     SHELKNPLSVIDLSLEILKDEKLEDKKLKKELLEKISRQSIKLNALTHKLNFVFNLNS
                     EALQMQEFDLFFLCEKITKNPGFERVVLQGKSTKVKADEFLIEQVIINLLSNALKYSQ
                     KEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSFGLGLFLVKKILNIH
                     KSYLEISSTLGYGSSFSFKLSQG"
BASE COUNT         1064 a          540 c          353 g         1288 t
ORIGIN      
        1 agtaaaaaaa tataaaatct ttttaattat aaattctcgc ttttctctaa tactaaaaaa
       61 tactcatttt ctagaatttc aagttctttt tgcattactt caagttcttg ataaagcttg
      121 ttaataccta tttcttgata tacatttgga tcggataaat cttgatttaa tttagctatc
      181 ttttgctcta aaaaatctat tttttcagga tagtttttta atatctcatt ttctttgtag
      241 cttaattttt tagagctttt ttctttttgg ttattatttt gctcttgagt ttgaagctct
      301 aaagcaaaat tatccaattc ttcaatttct ttttcatttt caagatattc agtgtaaaga
      361 gtgtgtaaaa tatttatata tccatctccc tcaaaagcat aaagttttgt tgcgatttta
      421 tcaacaaagt atctatcgtg cgatactagc aaaatagccc cttcaaaact aagtaaatat
      481 tcttctaata tattaatcgt agctatatca agatcattag ttggctcatc taaaatcaaa
      541 acatcatatt ctttagtaaa aagcaaggct aaagcaacgc gatttttctc tccaccgctt
      601 aaaagagcta cgcttttatc taaaaattcc ttaggaaata aaaaattttt caaatatcca
      661 taaacatgca tatttttacc acgaacttca accctatctc caccattggg acaaaaaatt
      721 tcaagcaagc ttttatcaga atttaccaag cttctagcct gatcaaaata tcctatctta
      781 agctctccac gttttatttc gccgctatct tgtttgattt gtcctagaag aatttttaac
      841 aatgttgatt tcccacaacc atttcttcct acgatagcta tgcgttcacc ttgtaaaata
      901 cgcgttgaaa aatctttaaa aagattttta tcgtttatat ttttgcttat atttttaagc
      961 tcaaaaagca tttttttacg attgatcgtt ttttctccat taaaatttaa agccgctctt
     1021 gaaatttcaa gttttaaacg tttaattgct ccaggatttt ttttcgcttc ttcacgcatt
     1081 ttaaaaatgc gttcttttcg tccttcattt cttttaagtc ttgcctttac ccctcttcta
     1141 agccattctt cttcactttt taattgtttt aaaagagttt catggctctt agcaaggctt
     1201 tgtaaaattt gtgttttttt ctctaaatag tttgcatacc cgcctttaaa aatactaagt
     1261 ttaccctgct ctacttctac acacttgtgt gctatagcgt caataaaata tctatcatgg
     1321 gaaataaaaa tcacacacat ctttgaattt tttagcaatt cttccaaaaa gcttgtcata
     1381 tatacatcta aatgattagt tggttcatca agcaataaaa tatcaggatt ttttagtaaa
     1441 agtatgcaaa gcccaacgcg gcgtatctct ccgccactta aagtagatat aatgcgattt
     1501 tcatactcaa gcaaactaaa ttcttttaaa acgcgtatta ttttagattc tatattccaa
     1561 gcatctttac tatcaatcaa agtcataagt gtatctattt ttttaagata atctttattg
     1621 ttaggttctt cttctaattt tttatgcagt atttcatatt cttctaaggc attgtaaatt
     1681 tctgcaagct cttgcttgat agcttctttt acacttaaat ttgcattaaa atcaacggtt
     1741 tgtgaaagca tggctatgct ttttccattt tgtcttatta ctctaccgct atctaaagga
     1801 agtgtgccta aaagcgtttt taaaaaagta gattttcctt ctccattttt gcctataata
     1861 gcaatctttt ctccctcgtt tgcactaaaa tttgcttcat ttaaaactat tttgtctcca
     1921 aatttttttg aagcttcaat taaatctata agagccattt tttatccttg actgagttta
     1981 aagctaaaac tagaaccata gcctaaagtg ctagaaattt caagataact tttatgtata
     2041 tttaaaattt tctttactaa aaaaagtcct aaaccaaaag aattatcgct ttttacatca
     2101 attttataaa atttttttgt aatcaatttt attttatctt cttctatgcc ttttccaaaa
     2161 tcttgcacta ttattttttg atctcttgct gttaaaatga cttctttttg actatatttt
     2221 aaagcattag aaagcaaatt tataatcact tgctcgatta aaaattcatc agccttaact
     2281 ttcgtgcttt taccttgcaa tacaactctt tcaaagcctg ggtttttagt gattttttca
     2341 catagaaaaa aaagatcaaa ttcttgcatt tgcaaggctt cactattaag attaaaaaca
     2401 aaattaagct tatgggtcaa agcattaagt ttaatgcttt gacgcgaaat tttttctagc
     2461 aattcctttt ttaatttttt atcttctaat ttctcatctt ttaatatttc taagctaaga
     2521 tcaatcacgc ttaaaggatt tttaagctca tgtgaaatag cagaaatcac gctagcaagc
     2581 tgagtatttt ttaaagtgat tttatcgctt tgttttttat ttttttgggt attctttaga
     2641 attttatcct tagtttttaa aagtttctca tttagtaaat taaattcttt aaacattcct
     2701 ttttctaata taacaacttt atgatcactt atagaatcca aaaaatccaa aattttatta
     2761 aaatttttct ctattcttct acctaacaac aacatcaaaa taaaaacaaa cagcaagcac
     2821 actccaaaac cgattgctat ttttatccaa aaaagttcta aatctaaaaa acgaggataa
     2881 acaataataa tatatttata tcctttgtaa ataaagcttt tggtaagaat tttttttgaa
     2941 ttgaaattta aaatttctcc ttctttaaga ttagaaaaaa aatcaggatt ttttacagaa
     3001 cttattttca tatcattgtt taggataata aaatcagccc tagtatcttt agcaaaatcc
     3061 ttaatattgg catcatttaa atgctctaag agagaaaatt ttaaaacatc atcaaggctt
     3121 ttgatttttt gttcatattg ttttgtaagc aagaaattaa gataagaatt agtaaaagta
     3181 taaaaaataa acccaaaaat caaagccaat acaacaaaaa aaactataaa aatattttta
     3241 gtttt
//
LOCUS       DAQSLY010000144         3203 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.145, whole genome shotgun sequence.
ACCESSION   DAQSLY010000144 DAQSLY010000000
VERSION     DAQSLY010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.145"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            88..759
                     /gene="hsrA"
                     /locus_tag="R2H98_001649"
     CDS             88..759
                     /gene="hsrA"
                     /locus_tag="R2H98_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEE9024504.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            872..1117
                     /locus_tag="R2H98_001650"
     CDS             872..1117
                     /locus_tag="R2H98_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEE9024505.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1117..2577
                     /locus_tag="R2H98_001651"
     CDS             1117..2577
                     /locus_tag="R2H98_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEE9024506.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTYEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2574..>3203)
                     /locus_tag="R2H98_001652"
     CDS             complement(2574..>3203)
                     /locus_tag="R2H98_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024507.1"
                     /translation="FSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLE
                     LSSINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVML
                     ILVILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNS
                     NVLLESVEIPEEQIIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
BASE COUNT         1177 a          460 c          452 g         1114 t
ORIGIN      
        1 aaatattaat ttttttttaa agatatctaa acatttactt aagctatgat ataattcttt
       61 aaatttttct taataaggat agaacaaatg agaattttag ttatagaaga tgagattagc
      121 ctaaataaaa caattataga caatcttaat gaatttggtt atcaaactga ttcttctgaa
      181 aattttaaag atggagaata ctttatcggc attagacatt atgatttagt tttagcaaac
      241 tggactttac ctgatggaga tggagcggaa cttgttaaca ctattaagca taaatctcca
      301 agaacttcgg ttatgattat gtcttcaaaa acagacaaag aaacagaaat caaagctttg
      361 aaagctggag ctgatgattt tgttaaaaaa cctttagatt ttgatattct actcgcaaga
      421 attgaagcaa gactaagact tggcggaacc aatgttatta aaattgaaga cttagttatt
      481 gatccagatg aggaaaaaat tacttataaa ggtcaagata tagaacttaa aggaaaacct
      541 tttgaagttt taacgcactt agcaagacat tcggatcaaa ttgtatccaa agaacaactt
      601 ttagatgcca tctgggaaga acctgagcta gtaactccaa atgttatcga agtagctatc
      661 aatcaaattc gtcaaaaaat ggataaacca ttaaatatat ctaccataga aacagttcgt
      721 cgtagaggat accgtttctg cttccctaaa aaatcttaac aattttgcac cttcggtgca
      781 aaaaatttat ctttatttct atttttatat tttatttaag tttggttatt gtataaacta
      841 aaattatttt ttaaattttt gaaaggttat gatgtctctt ttaattacaa aagactgcgt
      901 atgttgtgat gcttgcagag aagaatgtcc tgatgaagct atttatgaaa atagtccaat
      961 ttatgtaata gaccctgatc tttgttcaga gtgcgttaat gatttttcag agcctgcctg
     1021 tattgttgct tgcccatatg aatgtatcat tcctgatcct gataatgtag aaactataga
     1081 agaattaaaa ctcaaacata gagatagaga attttaatgg caaaaaaaac agccgttgtt
     1141 gatcttggct caaactccat tagaatggtg atttttgaaa aaacttctag atatggtttt
     1201 tatacaactt acgaatacaa acgcaaagta agacttggag aaaatgctta taataatggc
     1261 aaaattctcc aagaagaagc catgcaaaga gccgaagatg ccttagcttt tttcaaacaa
     1321 tgcgctttaa agcataagtg caaaaaaata tttatagtag gcacatcagc cttaagagat
     1381 gccccaaatt caaaaaattt cattaaaaga atcaaagata atctgtcttt aaatatacgc
     1441 tgtatagatg gaaaaagcga aagttactta ggtggtcttg cagctctaaa tttattaagt
     1501 ccttttaaag atggaaccac tttagacata ggtggtggtt ctagtgaatt gtgtttaata
     1561 aaaaataata gaattatttc ttgcatatct cttgatattg gcactgttag gctaaaagaa
     1621 ttgttctatg atactggaaa aatggattct ttagaagaat ttataaaacc aattttagaa
     1681 caaattccta aagaattttg caatcaaaac cttattgcaa taggtggaag cttaagagca
     1741 atatctaatt ccatcatgca aaaaaattcc tatccactga aaaatttaca tgattttcgc
     1801 tatatgctag atgaagaaaa agggcatatt ttaaaaattt ttaattcaaa cttagactct
     1861 ttaatcaatt ttggcataaa aaaggatcgt tttgatacca ttaaagaggg tatatttatt
     1921 tttttaaaga ttgcggaaaa aataaaagcc aaacaagtta tcacgagtgg ggttggaatc
     1981 agagaaggag tttatttgca agatttactt cgtcctaaaa tcacttttcc accaaatttt
     2041 aatcctagtt taaaatgttt acaagataaa tttttacaat caaaacaaaa aaataaaact
     2101 ccacattttg ctctgcaaat ttttacaacc cttaaaaatc ttcataaact taacgataac
     2161 tataagcata ctttactaaa tgctgctaaa ttatgccata ttggagaata tttaaatttc
     2221 tattttgcta atgaacactc tgctcatttt gtactaggtg gattaaatta tggattttca
     2281 cataaagaaa aagctttaat tgctagcatt attaagctta atggaaaaaa agttaaccct
     2341 tataatcttg aaccctataa acaactttta cccaatattc ataccatttc atggcttaat
     2401 tttattttgt gcctagctaa aactttaagc acaaatgaag ataagattga ttttgctttt
     2461 gcaaacaata ctctttatat atatcaagaa aacaaaattc ttaatttacc caaagatgag
     2521 ctcaaaaaaa ttgcaaaacc agctaccata gcattagcaa tcaatcaaaa aatttaagat
     2581 tttttacctt tttgacgctg ctctataaga ttttgaattc tttttttatt ctcttcaaaa
     2641 aaagaatcaa aatttttctc tgttttttct gtatgtttta ttatttgttc ctctggaatt
     2701 tcaacacttt ctaaaagcac attggaatta cctattatca ttgtataacg tttattagcg
     2761 tgatcaaaaa caacaagttg attattttta tctaaaaatc tttggaaaat catagtaaaa
     2821 tctctagaaa cattgttatt tttataaacc atagtctttt taaaccacca aagcactatt
     2881 aacaaaataa ctaaaatcag cattactaag atataatttg tataatcata cccttctaaa
     2941 cttgtacttt ttggtttagg cattaattct tgagaattat tcgcagtagt tgtaggtaca
     3001 gattcgatat ttgcttttcc ttgctctata gctcgtattc ttactccaaa tttatcattg
     3061 atagaactaa gttctaaatt aatattttgt ttgttttgta gcataatata ggtattatta
     3121 tttttagaac taatactaat tttatctaca agttgagagt taagttcttt taattcatct
     3181 ttagaatacg ttaaatcact aaa
//
LOCUS       DAQSLY010000145         3116 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.146, whole genome shotgun sequence.
ACCESSION   DAQSLY010000145 DAQSLY010000000
VERSION     DAQSLY010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3116
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.146"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..523
                     /locus_tag="R2H98_001653"
     CDS             <1..523
                     /locus_tag="R2H98_001653"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEE9024508.1"
                     /translation="LGEKYCFCIEGLVANHKEFPIAGIFSWFFPVNIEIANIKICLVT
                     SWFYYGKYNKRSDLIDVTSFVLENHDIDLKCLVSLEDYKNFINYTDDIKRFVFKLFNL
                     IEDRIAIERSRQISEQDIILFLLNRKIPARVFKDKIDYEIGYIKQHRPDIVASWKYYQ
                     EFEQMCKELDGNI"
     gene            590..1363
                     /locus_tag="R2H98_001654"
     CDS             590..1363
                     /locus_tag="R2H98_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEE9024509.1"
                     /translation="MKQGDFTKVAKHYHNRPAYSPFLLEKLVACINDKNKNFKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILIGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            1414..2175
                     /locus_tag="R2H98_001655"
     CDS             1414..2175
                     /locus_tag="R2H98_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEE9024510.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGMERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISNKILQRLPKEFSIKYTTRCWSAKKI"
     gene            2190..>3116
                     /locus_tag="R2H98_001656"
     CDS             2190..>3116
                     /locus_tag="R2H98_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024511.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSF"
BASE COUNT         1160 a          352 c          596 g         1008 t
ORIGIN      
        1 tcttggagag aaatattgtt tttgcattga aggtttagtt gctaatcata aggaatttcc
       61 tatagctgga attttttcgt ggttttttcc tgtcaatatt gaaattgcaa atattaaaat
      121 ttgtttagtc acttcttggt tttattatgg aaagtataat aaaagaagtg atttgattga
      181 tgttacaagt ttcgttttag aaaatcatga tatagattta aaatgtcttg tatctttgga
      241 agattataag aattttatta actacactga tgatataaaa agatttgtat ttaaattgtt
      301 taacttaata gaagatagga tagctattga gaggagtaga caaatttctg agcaggatat
      361 tattttattt ttattaaata gaaaaatacc agcaagggtt tttaaagata agattgatta
      421 tgagataggg tatattaaac aacatcgtcc agatatagta gcttcttgga aatactatca
      481 agaatttgaa caaatgtgca aggagttgga tggtaatatt taggagaaag atttgtaaat
      541 taataaaaaa aagatataat tgtgtttaaa attagagaaa ggaatcaata tgaaacaagg
      601 ggattttaca aaagttgcaa aacattatca caatagacct gcttatagtc cgtttttact
      661 tgaaaaactt gtagcttgta tcaatgataa aaataaaaat tttaaagatt taaatattgt
      721 tgaagtagga gctggaactg gaaaacttac taagatgttg ggagaaatgt ttggatgcca
      781 aattagtgct gtggaaccaa atgataatat gcgcgaagaa gggcaaaaat ttacacaaaa
      841 tttatcaaat atttcttggc ataaagggag tggcgaagaa acctgcatga gcaataatca
      901 agctgattgg gtcatcatgg ctagttcttt ccattggaca gatcctaaaa aatctctccc
      961 agaatttaat cgtatattga tagggggggg gtattttact gcgatttgga atcctcgcca
     1021 cattgtagag ggttcggttt ttgatgaaat tgaaaaggag attaaacata ttgttccaga
     1081 tcttgctcgt gtaagcagtg gcactcaaaa tgttaaaaaa tgggaagaaa ttcttgtttc
     1141 aacaggagat ttcacagact gcttttttat ggagtgtgac tataaagagt tttgggataa
     1201 agagcgttat cttggagctt ggcattctgt aaatgatata caagcacaag caggtgaaaa
     1261 aagatggaag gaaattttag agatgataga agctaaaatt tctcatatgc aaagtataga
     1321 gattccttat aaaataagag catggacagc tagaaaagca taaaatattt ccttttttca
     1381 tcaagcttgt caaagatgaa aaaaggaaat aaaatgcaaa aactagtaga acaagtgtgg
     1441 gattatacca agcatgctaa attttatagc tatagaccaa attatgctcc aaaaactata
     1501 gatatgctta ttagcttagt tggaaaaaaa gatattaaag tcgctgatat cggtgcagga
     1561 actggaaatt taagcattat gcttttagaa agaggatgta aggtagtatc tgtagaacca
     1621 aatgatgcga tgcgtgagat cgggatggaa agaaccaagg atcaaaagat tgactgggtt
     1681 agagcaacag gcttaaactc aacactccaa aatagtgaat ttgattgggt gacttttggt
     1741 agtagtttta atgtaatgga tagaaatgaa gccttagagg aagcgcatcg cttattaaaa
     1801 tcagagggat atttttcttg tatgtggaat cacagggatt taaacgatcc tgtgcaaaaa
     1861 atagctgaag atactattgt agaatttgta ccaaattata caaggggaac aagaagagaa
     1921 gatcaaagac caattataga gagtcgaaag gatctttttg ataatattgt ttatattgaa
     1981 gaggattttt attttcatca aagcattgaa aattatatta atgcatggaa gagtgttaaa
     2041 aatccttact gggatttgga gactgatgaa ggaaatgaac tttttaataa aattagtaat
     2101 aaaattttac aaagacttcc taaggaattt agcataaaat ataccactcg ttgttggagt
     2161 gctaaaaaaa tataaaacta aggaaaaaca tggcggagtt aaaatttaaa accaaagcac
     2221 aaaatttaaa aaatttacaa acaaaattaa aaaaagcaaa agttctacct ttggttttaa
     2281 cttcgcttga agaattaata tcaaatgaag ataaagtttt acaggacatt caaaccttaa
     2341 aggctaatag actcattata agaagttctt ctttaagtga agatagcatg aaaaactcca
     2401 atgcaggtgc ttttctttct ttggcaaata ttaaagctga ttctaaagat gagttattaa
     2461 aagctttata tgaagttgcc aattctatgc catcaaaaag tgatgaaatt ttagttcaac
     2521 ctatgcttga aaacattact ctttgtggag ttggttttag tgttgataag gataattttt
     2581 ccccttattt ttgtcttcaa tatgatgaaa atggttcaaa tagctctatt acagatggaa
     2641 gcagtaagag tgcaaaaact tactatcatt acagaaatta tttagaattt aaagatatta
     2701 gacttcaaaa aattatagaa cttataaaag aattagaagt tttatatgat tgtcattttt
     2761 tagatgttga atttgcattt gctattcaag atgataagga agaacttttt tgcttacaag
     2821 tgcgtccttt ggttatgcat gaaaaaaata atttatttca ttctttacca aaagaagctt
     2881 tatatagatt ttataaacgt tttgagtctt taaaagaatc aagatctaga gttttgggag
     2941 ataaagctat ttttggggta atgcctgatt ggaatccagc tgaaatcata gggttaagac
     3001 ctaagcgttt agcttttagt ttatataaag aaatcattac ggataatatc tgggcgtatc
     3061 aaagagataa ttatggttat agagatctaa gatcccatcc tttaatccat tctttt
//
LOCUS       DAQSLY010000146         3088 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.147, whole genome shotgun sequence.
ACCESSION   DAQSLY010000146 DAQSLY010000000
VERSION     DAQSLY010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3088
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.147"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            196..615
                     /locus_tag="R2H98_001657"
     CDS             196..615
                     /locus_tag="R2H98_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEE9024512.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            619..1071
                     /locus_tag="R2H98_001658"
     CDS             619..1071
                     /locus_tag="R2H98_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024513.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            1068..1628
                     /locus_tag="R2H98_001659"
     CDS             1068..1628
                     /locus_tag="R2H98_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEE9024514.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(1635..2534)
                     /gene="cysM"
                     /locus_tag="R2H98_001660"
     CDS             complement(1635..2534)
                     /gene="cysM"
                     /locus_tag="R2H98_001660"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEE9024515.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDQVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(2661..2957)
                     /locus_tag="R2H98_001661"
     CDS             complement(2661..2957)
                     /locus_tag="R2H98_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEE9024516.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
BASE COUNT         1106 a          472 c          384 g         1126 t
ORIGIN      
        1 atgattctag atttagggtt gaatttttaa acaataatgc tccaactggt tttttctttg
       61 attttgatgt tactatgcaa aaaaattttc aaacaggtaa cacacattga aaaattttca
      121 aaattttata ttcaaataaa aatatttttt gatataatga acaaatattt aatattataa
      181 aaataaggat acaatatgaa aaaaattctt ctcttaggtg ctctttttgc tgtaaatctt
      241 tgggctgtta atgatataga ggtaaaaaat gcctttgtaa aacaaactcc acctcatgcg
      301 caaaatagtg ctatttttct tactattttt aataatacta ataaggatat tgctctaata
      361 agtgccaaaa gcgatatcag tgaagtcagt gaactgcata cacatataca taaagatgga
      421 aaaatgatga tgcaaaaaat tcctgaaatt attataaaag ctcattcaag cacagagctt
      481 aaatctggag gttaccatat aatgctttta aaactaaaaa aacctattat taaagacacg
      541 aaggtaaatt tagatttaaa atttaataat cacaaaacca tagagttaaa aaatattgat
      601 tctaaagaat tttaattaat gagaaaaatt atttttatcc tagcttttgc ttttgttatt
      661 gctattttat atattatttt tgatttttat gtaataaaag attctcaaaa aataacaaaa
      721 actgattttt ctaccccatt gacttgcgat cttaatgtta aagactgcac atatagtttt
      781 aacaataaaa aagtcttaat ttccctaaat cccaaaccct tacaatcttt agatgttaca
      841 aatctaaaga ttgtaaatct aggaaattat aacaacttag gaattaaaat ttatggatta
      901 aatatgtata tgggcgaaat taaacctaaa atacatcgat taaattcaac agactatgaa
      961 agtaaaatag ttcttgctgc ttgcgtttta gatactatgc gtttcagggt agaatttatg
     1021 gataataata aacccatagg gttttatttt gattttgagc taaaaaaatg aaaaaaaata
     1081 ttattttgtt tatagttata gttgccatta ttttaggtgt aatatttttt attaaaaatc
     1141 atcaaaattc ttatgatttt atcttaaaat cagacttaaa agaggaaacc accctaaaag
     1201 attttaaagg agataagctt attatctatt ttggatatac ttattgccct gatgtttgtc
     1261 cggcaactct tagtttagta ggcaaagcct taaagcaaat caataatcct aaggctcacc
     1321 ttctttttat ttctttagat ccaaatagag ataataactt aagcaataca aacgaatggt
     1381 tacgatactt ttacccaaaa gcagatgcct taattgcaaa agatgaaaaa actcttcaaa
     1441 aaataacaaa acaatataat gttcaatatc aaaaaataga tctaaatgat tcttttatgg
     1501 gttattctat agcacatagc aatatgcttt atcttattga tgaaaaaggt catttttata
     1561 aagaaattag cgatttaaat ccacaagaaa ttttaagaga acttagaatt tttctaaatt
     1621 ctcaataatt atacttaagc aaaaagatca gttgagaggt atctttcagc cgtatcgttt
     1681 agcatagtta aaattctttt atctggaaat ttctttgcta gcatacttgc ggcaaataca
     1741 tttgctccac ttgatatacc taccattaaa ccacttttgg caagttcttt ggctgtattt
     1801 atagcatctt cattacttac tgtgatcact tgatctataa cttctttatt taaaatagca
     1861 ggtataaaat tcgcccctat tccttgtatt ttatggcttc ccgcttcgcc tttgctaagc
     1921 aatggagaat ttagaggctc gactccaaca atatgcactt tttctaattt ttcttttagt
     1981 atttccccaa ctccactaat agtaccgcca gttccaaaac cagctacaaa aatatcaagt
     2041 tcattatcca aatctcttaa aatttctaaa gccgtattct tgcgatgcgc atttttattt
     2101 gaaatatttt caaattgaga aaccataaaa gaatttggag tatttaataa tatttcattt
     2161 gctttatcaa ccgctccttt cattcctaaa tttgcaggag ttaattctaa cctagcgcca
     2221 aagagtgtta tcatttttct tctttctaaa ctcatagatt cgggcattac agcaataaat
     2281 ttaagtccca aatctgcaca aatcatagcc aaagaaattc cagtatttcc actagttgct
     2341 tcaactattg tagtatcttg attaattttt ttactatcta aagcatcttt aatcatttca
     2401 aaagctgctc tatcttttat agaatgacta ggatttaaaa attcacattt agcaaaaaca
     2461 ttgataccaa attttttcaa atgtataata ggagtatttc ctataagctc acttactttt
     2521 tcatgtactt tcataatttt aatatccttt tttgtttaat aatgatagtt ttataaaagt
     2581 ttaaaaaaat aaagtaaata aaagatacaa aatatctgaa ttaattaaga aagaaggcta
     2641 gaatttatct agccgaagtc ttattttttc tttttgccgc ttgcttttgc aacagcttct
     2701 ttaaggtttt tacctacctt aaattttgca actcttgtag caggaacttt gattgttttt
     2761 cctgtgcttg gtactctagc ttctctagca gctctttctt gagttgaaaa agtaccaaaa
     2821 ccaataaaac tgatgctatc acctttagcc aaaacatcag taatagtaga aataactgca
     2881 tcagtagcag tagtagcgtc tttttttgtt agcccagctg tttgagcaac taatgaaatg
     2941 aaatctgctt tagtcataaa agctcctttg ttttaattga aacgcctaat tttagcatat
     3001 ttaaaaaaca atatcaagta aaaaacagct ttttttaagt ttttttcaaa aaactttatt
     3061 attttttctt atatctttca aattctcc
//
LOCUS       DAQSLY010000147         3077 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.148, whole genome shotgun sequence.
ACCESSION   DAQSLY010000147 DAQSLY010000000
VERSION     DAQSLY010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3077
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.148"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            217..1281
                     /locus_tag="R2H98_001662"
     CDS             217..1281
                     /locus_tag="R2H98_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEE9024517.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1271..3055
                     /locus_tag="R2H98_001663"
     CDS             1271..3055
                     /locus_tag="R2H98_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEE9024518.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSIFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDETR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFYLFETMYFKNSQILFLKEHLLRLINSALKFNF
                     NTHKLFKDFYNVLNQKSSYKEYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGIL
                     KLILYRDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRSFYNQHSYKWQQ
                     NLCYDIAFFNEKDELCEGSRTNLILEKNAQFYTPQIQSGMLNGVYRNFLVNLGLIKEK
                     ALFKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT         1239 a          404 c          401 g         1033 t
ORIGIN      
        1 acagttttca atacaaaatt ataaatttta tatattttta ccttttatca tatcttttta
       61 tgattgatat aagatttatt taataaaaat atttcaatct ttttgccttg catataaaaa
      121 caaacttttt cctaaaaaag ctttttttta ctaagttaat actaaaatac cttttctagt
      181 taaaaagcta aaattttaga tttaggaaaa gtttttatga aatacccttt agattgtgaa
      241 gaaaattttg aaaaatcatt cttattttgg ttagcaaaat atgtaaaatt taaactcaac
      301 tcactatcta acaaagagtt aaaaaatcca caagctttag cagaagttaa ttttgctctt
      361 acaaaaggtg taaaaaatat tgatgaactt gacgctctag caaaaaaagc aagaaatgct
      421 ggtttaagtg gagttaatac ttattttaat cctttaaaaa aagtatttga atatttaaat
      481 ttttataagc tttactcttt aaaacagatt gatgaagaac tcattgtaga agttttagca
      541 agtataacag gtgctttatc agatgcaagc aaaaaaaatt accgtattgc tgtgattaat
      601 ttttttgatt ttttagacaa gcaaaatgaa gaagatgaaa aagcacatat tttcgatatc
      661 aatcttaaaa actgggcagg tatagcaggt tctaaagggg taaaattacc tgaatttatg
      721 agtgaagaag agcttaaaaa atttcttgat gctattgaaa atgcagattt taaaaacaat
      781 accatacgca ataaacttat tattaaaatc atcattttta caggcatacg ggtaagtgaa
      841 gctatcaata tcaaaatggg tgatattagc gaagaaaacg atctttatat cataagaata
      901 agagctaaag gcaataaata tcgtgttgta atgataaaaa aagaacttat ttacgatttg
      961 cttaaaaatg taagtattaa ttatatgagt aaagacgccc tactttttgt caataaaaaa
     1021 ggcactccac tgactcaatc ttatgtcagt cgcatagtag aacagctttt atttcgtgca
     1081 ggaattcgca aacaaaaaaa tggtgctcat atgttgcgtc atacttttgc caccctgctt
     1141 tataaaaagc aaaaagattt agttttagtt caagaagctt tagggcatgc aagtttaaat
     1201 acctcaagaa tttacactca ttttgataat gataaattaa aacttgccgc acaggttgca
     1261 aaggaattaa gtgactcttg aaaactatgc tgtttttggt aaatattttt accatgattt
     1321 aaaacacact ttaaaagcct ttaaccacaa agaaagtaaa aagtgcttta aatttataga
     1381 aaaatataaa aatgattttt atattttaat gcttgctgat tatgagctat atagatattt
     1441 tcaagataaa aatttcacaa gcaaaaaagc ttatttgtct atatttgctt ttaaaaaaag
     1501 aaaaaaattt caaaaagaag atatcgatga agaaaaattt attcctgaat ttataaattt
     1561 tttagatcaa gataattaca aagaaaattt catcaaggtt aaagaggcaa tctctaaagg
     1621 aagagtttat caaatcaacc ttactcaaaa ttttaaattt catagcaaaa tggattcttt
     1681 tgaacttttt aaacttttgc tttctagaca agatactgaa tttaaagctt ttataaaaga
     1741 tgaaacaaga gaaattttat ccttttctcc tgaacttttc ttcaaaacca aaaaaagaaa
     1801 aatatttaca aaacctatga aaggcacaat taagcgtgat aaagatccta taaaagatga
     1861 agaaaataaa attttcttgc aaaatgatac aaaaaatctg agtgaaaatg ttatgatttg
     1921 tgatctttta cgcaacgatc tttcaaaaat catcacaaaa aaaagcttaa aaaccaaact
     1981 ttttgaaatt caaagtcacc ctactttaca tcaaatgact tcaagcgtac aaggaaaact
     2041 taaaaaaaat atttctttat atcaaatttt taaagctctc tttccttgtg gttctattac
     2101 aggtgctcca aagcttgaaa gcattaaatt tattgaagaa ttagaacaaa gagatcgtgg
     2161 tatttactgc ggaactatag gtttaataca caaaaataaa aataaattta gcgtagccat
     2221 acgcacctta gaaaaacaag atgaaattta tacttatagc acgggtagcg gcttagtttg
     2281 ggactcaaaa ttcaaagatg aatttgaaga attaaaactt aaaagtgcaa tcttaaatcc
     2341 ttgtgatttt tatctttttg aaaccatgta ttttaaaaat tctcaaattt tatttttaaa
     2401 agaacattta ttaaggctta taaattcagc tcttaaattt aattttaata ctcacaagct
     2461 ctttaaagat ttttataatg ttttaaatca aaaaagttct tataaagaat atcaaaattt
     2521 tacacttttt aaactcgatg aaaaaatttt ccacaaaaaa cactctttat tttataattt
     2581 tcccctaccc tttaaaaatc cacataaaga aggaatttta aagcttattt tatacagaga
     2641 cggaagatac gaatttcaac aaagtgcctt aaaacaaaat tcaaacgata ttttgctttt
     2701 aagtgatgat aaaattaact caaaaagtga caatctctat cacaaaagct ctttacgtag
     2761 tttttataat caacactcat acaaatggca gcaaaacttg tgttatgaca tagctttttt
     2821 taacgaaaaa gatgaacttt gcgaaggctc aagaaccaat ctcatcttag aaaaaaacgc
     2881 tcaattttat actccacaaa ttcaaagtgg tatgttaaat ggcgtatata gaaatttctt
     2941 agtcaatctt ggtttgataa aagaaaaagc attatttaaa caagatttat ttgaagcaga
     3001 aaatatttat tgtattaatt ccgtgcgtgg tttaaaaaag gtaaaattac aatgaagaaa
     3061 attttattta tagataa
//
LOCUS       DAQSLY010000148         3069 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.149, whole genome shotgun sequence.
ACCESSION   DAQSLY010000148 DAQSLY010000000
VERSION     DAQSLY010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.149"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..832
                     /locus_tag="R2H98_001664"
     CDS             <1..832
                     /locus_tag="R2H98_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEE9024519.1"
                     /translation="KNLEQEQNTSSNLVSVSIAPQAFFVKKIAANTLDVNVILPPNSN
                     EHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQNFSKLQVVNMQKNIALIQTHD
                     THEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTLIQKYPQNENLYKENLDKFLA
                     ELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLTQIPVEILGKEPKSKDLQKLI
                     TLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDHLSYDWENELLKTADAFSHNL
                     "
     gene            845..1699
                     /locus_tag="R2H98_001665"
     CDS             845..1699
                     /locus_tag="R2H98_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEE9024520.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIILMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            1692..2495
                     /locus_tag="R2H98_001666"
     CDS             1692..2495
                     /locus_tag="R2H98_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEE9024521.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(2484..>3069)
                     /locus_tag="R2H98_001667"
     CDS             complement(2484..>3069)
                     /locus_tag="R2H98_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEE9024522.1"
                     /translation="FSKNYEKDFSYKISRHFDYYENLLLWCKIFLKNESFMPYHGKNE
                     AFALLFPMEKIFEDYVAYMLKKVNSTQDIKVQNNGKYLISKNDENCFMLKPDLYIKNK
                     MILDTKWKIPNDSEDEKKQGIAQSDLYQMFAYACKFKIHDIKIVYPLCEKTQDLQRKI
                     AEKFFVFKASEHLYFKEQGQKDIKVQVFFAPLPF"
BASE COUNT         1073 a          436 c          450 g         1110 t
ORIGIN      
        1 taaaaattta gagcaagaac aaaatactag tagcaattta gttagtgtca gtatagcacc
       61 tcaagcattt tttgttaaaa aaatagctgc aaatactcta gatgtcaatg ttattttgcc
      121 cccaaatagc aatgagcata attttgaatt taaaccaagt actatgaaaa aacttgaaaa
      181 aagtgatatt tatttcacta taggcttaga atttgaaaaa gtttttacgg ataaatttaa
      241 acaaaatttt tcaaaacttc aagttgtaaa tatgcaaaaa aacatagctt tgattcaaac
      301 tcatgataca cacgaacact ctcatgagca tgaacaccac gaacatgagc attttgatcc
      361 tcatacttgg ctagatccta ttttagtcca aactatggct ttaaatattt atgacacctt
      421 gattcaaaaa tatccacaaa atgaaaattt atataaagaa aatttagata aatttttagc
      481 agaattagat agtttaaatt tacaaattgc ctcaaaatta gaaaaattaa aaaatagaga
      541 atttgtagtt tatcatcctt cttggacata ttttgcaaaa cgctataatc ttacgcaaat
      601 tcctgtagaa attttaggta aggaaccaaa aagcaaagat ttgcaaaaac ttatcactct
      661 aatgaaagat aaaaatttaa aagtcatttt tgttcaaaat ggtttccctg aaaatgcagc
      721 aaaaacactt gctaaagaat gtgatgcaaa aatttacaaa atagatcatt tatcttatga
      781 ttgggaaaat gagcttttaa aaactgctga tgccttttct cataatttat aatcaggttt
      841 tttgatgctt ttttttgaaa tttctaatct aaactacgct tataataatg aaatcatctt
      901 aaaaaacatc aatcttagct atgacaataa agactttctc tctatcatag gtccaaatgg
      961 cgcaggaaaa tcaacactcg taaaacttat cttaggactt ttaaaatcca aaaatgaaat
     1021 ccatttcaaa gctcttcaaa aaaaagaaat aggctatgtt cctcaacaca ctctagccaa
     1081 tcctaatttt tgtccaagag tacttgaaat cattcttatg ggacttgtaa gtaaaaaaat
     1141 ttttggtttt tatgggaaaa aagataaaga aaaagctatg caagctttaa aaagtgtagg
     1201 aatggaaaaa ttttggaaca aaaccattga ttctctaagt ggaggacaaa ggcaacgtgt
     1261 ttttatcgcg agagccttag ctagtgaatg caaaatgctt attttagatg aacctaccgc
     1321 aagcgttgat aacaagtctg ctatacaaat ttttgaactt ctaagctctt tgcaccaaaa
     1381 aggcatggga attttactca tttgtcacga tatcaacctt gtattagctt atagcgataa
     1441 aattgcacat ttaaacaaag aacttttctt gcatactaac actaaagaaa aagaaaaaag
     1501 ttcattttta aaacatttat acgaaaatca ctctcatttt tgtgatgtag aaatgagttt
     1561 aaatacttgt ttttgtgatg aaaaaaattg cgatagcaaa aaactatgcg aacaagaatt
     1621 tacaagaaga aatttgaaaa aaacagaatt taaaaaagaa aatttttgtt taaaattttc
     1681 aaaggaaaat aatgcttgaa attttaaatt tcaccttttt tcaaaacgct ttactaggag
     1741 cgattttagt cagtatagct tgtgggatca taggtacttt ggtgatgata aatcgccttt
     1801 tttctatggc tggaggtata acacatgggg cttttggtgg tataggtata gctttttatt
     1861 tctctttacc tattttatta agcacgggaa tatttacttt atttttggct tttttagtag
     1921 cttttttagc taaacactat gaacacagaa gtgatagtat tatcgctgta atatgggctt
     1981 ttggaatggc tgttgggatt attttaatcg atttaagccc tagttataac acagatttaa
     2041 tggcttatct ttttgggagc attttggctg taggaacaca agatttatgg cttatggctt
     2101 tggttgatag cgtggtggtg cttttgatct ttttatttta tagacaattt gaagcattaa
     2161 gctttgatgc ggaatttgca aaagttcgtg gtatcaatac aagttttttt cattatcttt
     2221 taatcgccct tatggctttt tgcatagtta tttccatacg ccttgtaggg cttattttag
     2281 ttatggcttt acttagtatc ccaagcttta ttgctgaaaa tttcactaaa agacttggct
     2341 ttatcatggt tttggcaagt tttttaagta tgattttttg tgttttagga cttatactta
     2401 gctattatct taatctctca agcggtgctt gtatcatagc tgtagcttgc tttggttttt
     2461 taatgcattt gataggcaaa tttttaaaaa ggtaaaggtg caaaaaatac ttgcactttt
     2521 atatcttttt gcccttgttc tttaaaatac aaatgttcgc ttgctttaaa aacaaaaaat
     2581 ttttctgcga tttttctttg taaatcttga gttttctcac ataaaggata cacaatttta
     2641 atatcatgga ttttaaattt acaagcataa gcaaacattt gatacaaatc gctttgtgct
     2701 ataccctgtt ttttctcatc ttcactatca tttggaattt tccatttggt atctaagatc
     2761 attttatttt ttatatataa atcaggcttt aacatgaaac aattttcatc attttttgag
     2821 attaaatact ttccattgtt ttggacttta atatcttgag ttgaatttac tttttttagc
     2881 atataagcta cataatcttc aaaaattttc tccataggaa aaagcaaagc aaaagcttca
     2941 tttttaccat gataaggcat aaaactttca ttttttaaga aaattttaca ccataaaagc
     3001 aagttttcat aataatcaaa atgtcttgaa attttatagc taaaatcttt ttcataattt
     3061 ttagaaaat
//
LOCUS       DAQSLY010000149         3014 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.150, whole genome shotgun sequence.
ACCESSION   DAQSLY010000149 DAQSLY010000000
VERSION     DAQSLY010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3014
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.150"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..1176)
                     /locus_tag="R2H98_001668"
     CDS             complement(<1..1176)
                     /locus_tag="R2H98_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEE9024523.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSTEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYEFFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     "
     gene            complement(1166..>3014)
                     /locus_tag="R2H98_001669"
     CDS             complement(1166..>3014)
                     /locus_tag="R2H98_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEE9024524.1"
                     /translation="KVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEK
                     FQNLEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFW
                     DKKEWQNILESSHFNADLKEFIDKLDKSVNIEDFIKVKPLIQNIALCELKDFSSAKNK
                     ISALIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQ
                     SLTQKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDEN
                     LVEKIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYK
                     KELHLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIV
                     KLKNIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDI
                     LREIKFENIKKIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKFALLR
                     LKIEKLSNLKSDLYELETNLDTVIFDTFKEFKMSEILNSLNINGAFFEFLNDKLKHYE
                     KNQKSKLESFEKVLQSLKNQDINILNSFEENLEKIEKLKQLEMGLLNAD"
BASE COUNT         1020 a          487 c          295 g         1212 t
ORIGIN      
        1 aaaagcatcg tcgcttgaaa tataaggcgc tttataatca tatcttgtgt ataaatcttt
       61 ctttaaaaat cctttgcttt ctttgtaaaa ataagcatct ttttccttaa cacttgcaaa
      121 aatttcacta gaaattcttt cgctaatgct tttaagctgt tctaaaatct gatgatttaa
      181 aatttcaatc tcttttaaaa aaaattcata cgctaaaagt aaatgctttt cataactttg
      241 aaattgattt aataaacgat caaaaatacc tacaaaaagt tggttttcat cttctaaaat
      301 ttcgcataaa tttaaaattt ttcttttaac aaatttttct tttaaaactg ttgtatctag
      361 ctgagttaaa aaatcaagca aagattgaaa attagatttt tcatagcttt gctcatcttt
      421 agcctctttg caagaaatgg caataagctc attaaaatat tttaaaaaca cactttttgc
      481 ataatttaaa acattatcta gctcttctgt gcttaattta tctttttgat ttaatacaca
      541 aatgctattt tctcctaaaa gttctaaatt tgcttttatg gcatcttctt cacttttttt
      601 acctgcatta tcaatcaaac ttaaccaaat cgctccatga atatttttaa gctcatcaag
      661 agttgttaaa gtatcatttt catttgcatt taaacctgga gtatctacaa gagtgatttt
      721 ttcaagtaaa ggaatgggtg caaaaatatg caaacttttt gcttgtttta cttcatttct
      781 ttgatccgta taaaaggcta atttttctat atttgtgata atatcacttc catcttcaaa
      841 ttctactctt aaaaaatatt cttttgcata gcgtaaaaaa gtaggtttaa aagtaacagg
      901 aacaacaccc gtaggcaaac aatcacgccc taagatcaaa tttagcaaac ttgatttacc
      961 acttgaaaac tgccctataa tagcgatatt aacattctta tccaaagaaa acacaagctc
     1021 ttttaattca ttttctaaag cataacttgc gtgcataaaa ggctcgttaa gttccttgca
     1081 aagctcttga atacgccctt taaaactatc atcaaaactc acactataag tattttcata
     1141 ggcttttata aaatcattta aaagattaat ctgcatttaa aagccccatt tcaagttgtt
     1201 ttaatttttc aattttttct aaattttctt caaaagaatt taaaatatta atatcttgat
     1261 ttttcagact ctgtaaaact ttttcaaaac tttctaattt tgatttttga tttttttcat
     1321 aatgttttaa tttatcattt aaaaactcaa aaaatgctcc attgatattt aaagaattta
     1381 aaatttcgct cattttaaat tctttaaaag tatcaaaaat aaccgtatct aaattcgttt
     1441 caagctcata taaatctgat tttaaattgc ttaatttttc aattttcaat cttaaaagtg
     1501 caaatttttc actttgaaaa atactatcta tattttttga aattccatct ttaaaacctt
     1561 caaaaccatt atcaaaatca tcttttaaaa aatcatattt taaagacaaa tttgttttaa
     1621 gctcctcgat ttttttaata ttttcaaatt taatttctct taaaatatca ttaatcccat
     1681 cttttgtagt aatatcaact atatttaaaa tacgagaaag attaagcttt tgtgcattat
     1741 tttttaaata tttaaactca tctatcaagc gttcttttaa ttttttagcc aaaagtaaaa
     1801 caagattatc tataccatta tctatatttt taagttttac aatggaattt gaaatttcat
     1861 cttgtgcttc ttttaataag atattttgct tttgaagttc aagtaaaagc ttttgatttt
     1921 cttcacttac accttgttta ttctccttaa taagacgatt ttgcatttca tattcgctta
     1981 gaatattttt aagttccaaa tgtaattctt ttttgtaagc tcttaaggca atcttgcttt
     2041 tttctcctgc ataaagctcg ttaaaaagat agttttcaaa ttcttgcata ccactttttt
     2101 gcaaactttc cttaggtgct aaacctttat aaaaatcact tgccatttta gcactcacac
     2161 ataaaaaatc aatcttttcc accaaatttt catctaaatc tacaagtctt gattttaagc
     2221 tttccttggt ataaacaatg acttcttcta aatccttttt gcttaacaaa tccgctttag
     2281 ttaaaacaat taaaaactta ctcagccttg aatttaaaag acaatgcacc aaaaagtctg
     2341 catctttttg agtcaagctt tgagaagcat tcattaaatg aattaaaaaa tcactttctc
     2401 taagatactc atttgtaaca atttctcttt gaactacaac atcatcaagt cctggagtat
     2461 caactatgga aatattattt tttaaaaatt ctaaatgact tttaatttct atttttttaa
     2521 ttaaagctga aattttattt ttagctgaac tgaaatcttt aagctcacaa agtgcgatat
     2581 tttgtattaa aggtttaact ttgataaaat cctctatatt tacactctta tccagcttgt
     2641 caataaattc ttttaaatct gcattaaagt gcgaactttc aagtatattt tgccattctt
     2701 tcttatccca aaaatatatc tttgcttctt cgctcttacc ataacttaat actgttaaat
     2761 tagctgtttc aggtatgttt gaaacgccta aaaaatcttc ttttaaaaga gcatttaaaa
     2821 ggcttgattt tcctgcattc atcacgccag tgatggctat attaaactct aaattttgaa
     2881 atttttccaa agttttttga agtcttgatt ttaaattttc atcaaaactt agcttttgaa
     2941 gctctaaatt aatggtgttt aattctttaa aatcattttg aaataaagct ttttgatcta
     3001 tactttgaac tttt
//
LOCUS       DAQSLY010000150         2992 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.151, whole genome shotgun sequence.
ACCESSION   DAQSLY010000150 DAQSLY010000000
VERSION     DAQSLY010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2992
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.151"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            142..2010
                     /gene="rpoD"
                     /locus_tag="R2H98_001670"
     CDS             142..2010
                     /gene="rpoD"
                     /locus_tag="R2H98_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEE9024525.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2026..2538)
                     /locus_tag="R2H98_001671"
     CDS             complement(2026..2538)
                     /locus_tag="R2H98_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEE9024526.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2535..2975)
                     /locus_tag="R2H98_001672"
     CDS             complement(2535..2975)
                     /locus_tag="R2H98_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEE9024527.1"
                     /translation="MNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYL
                     GALCFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNS
                     TKGLIVAILLMSFVPLLMGINVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1285 a          444 c          434 g          829 t
ORIGIN      
        1 aaagaaaaaa ttataatttt aacagagctt tagaaaaatt tgaaaaaata ttcaaatcat
       61 aaacataata accgatttat atagaaagtt aagcaatttt tagataaaat ccaaagctta
      121 tataaatttc aaggataatc aatgaacgcc aaaactcaag aagctgaatt agaagaatta
      181 tttcaagaaa atgcaaaaga ttatatcaca tatgaaaaat tggtaaaata tcttacaaaa
      241 caaccaagtg catcaaccac taaaaaagtg caagcattaa tgaaaaaaca caaagtgcaa
      301 cttttttcag cagctgaaat tgcacaaatg aaaaacatag aagatgcaaa aagacttcaa
      361 gaagaaaaac aaaaactcca agatacaagc cttgagaacg aatttgattt agccaatgaa
      421 aacgatttat tagaatggag cagatcagac tctcctgttc gtatgtattt aagagaaatg
      481 ggacaaattg ctttattaaa caaagatgaa gaaattgaaa tttccaaaaa aatagaactt
      541 ggcgaagata ttatcattga tgctttttgt tctgtacctt atttgataga ttttatttta
      601 gattataaag aacctttaat aaacagagaa agaagggtaa aagaactatt taaaagcttt
      661 gacgatgaag aaaaaagtga tgataaactt gatgaacttg atatagatga agatgaagaa
      721 aacgaaacag aattagaatc agatgaagaa aatactaaaa aaaacagcaa aaaagaagat
      781 gaaagaactt taaaagttat agaaaaattt aaagctctag aaaaagctaa aaaagattgg
      841 ctaaaaacat ccaaagacaa agaaagcgga gatgaacttt tagataaatt aagcattgcg
      901 ttcaaaaaaa atattttaaa agaaaaatta atggatctag gccctacttc aaaacttatt
      961 agcgaaatcg taaaatcaat ggaaactgca ctaaaaagtg atgaagaatt tgacaaagaa
     1021 cttaagcgtt tagaataccg cttacctatg ttttctgatg aacttaaaaa acgccatgca
     1081 gatattttaa aagatattac aaaattgagc aaagaagaaa tcacagagcg agctttagaa
     1141 acaaccatgg taagcactta tatggaaatt aaaaaactat ttcaaactaa agaagccagt
     1201 gaaaaaagct ttgatcttga aaaatcacgc ttaaaagaaa ttttggagca aattaaacgc
     1261 ggtaaaaaaa tctctgatga agcaaaagga agaatggcaa aatcaaactt gcgccttgtt
     1321 gtaagcatag ctaaacgcta cacaaatcgt ggtctgcctt tcttagacct tatccaagaa
     1381 ggaaatatag gtttgatgaa agctgtggat aaatttgaat acaaaagggg ttataaattt
     1441 tccacttatg caacttggtg gatcaggcaa gctatttcaa gggctatagc tgatcaagca
     1501 agaaccataa gaattccaat ccatatgata gaaaccatca atcaaattaa caaaattatc
     1561 cgcgaacatc tacaaaaaga tggaaaagaa cctgatgtca gtgttatagc taaagaagta
     1621 ggtttaagcg tagataaggt taaacaagtt attaaaatca caaaagaacc aatttctctt
     1681 gaagctccaa taggaaatga agatgatggt aaatttggag attttgttga agatagaaat
     1741 tcactttctc caatggatca tatcttaaag gatgatttaa aagaacaaat tgatgaagtt
     1801 ttagatcaat taaacgatag agaaaaagcg gtaattcgta tgcgttttgg tttaatggat
     1861 gatgaaagtg atagaacttt agaggaaatt ggaaaggaac ttaatgtcac tcgagaaaga
     1921 gtgagacaaa tagaaagctc agctataaaa aaactcaaac accctaaagt aggaagaaaa
     1981 ctaaaaaatt atatagaagg ttggaagtaa gagtcaatct ccttactaaa aacccagatc
     2041 tttttcttct tttaacttgc gtacatgttc aaaaaaaact aattttccgc tatgtttttt
     2101 taaattttta aattccttaa tatcaaattc taaacacaag atagaagaag ttggaaaaga
     2161 agctaaacat agcgaactta ataactctcc aagctccatt aaactaggat tatgacccac
     2221 taaaaatact tcattaaact catcatcaat atcttgcaga atttttagca aattttcaac
     2281 attgcaaaga tacaatcttt catcaaaaca aattctattt ttatcaaaat tataaaattt
     2341 ggctattttt ttcgctgttt tagcggttct aacagcagga cttgatagca ccaaatcagg
     2401 atgaatttca tgcgaagcaa gatttttaaa aagttttttt aaatcttcct ttccactctt
     2461 agtaagcttt ctttcaaaat catcgatgtc ttcactctta cttgcttttg catgtcttat
     2521 aatataaatt tttttcattt tacctctttt attttagcta aaatataacc acacataaac
     2581 ccgaaaatat gaccatacca agcaacattt atccccataa gcaatggcac aaaactcata
     2641 agtaaaattg ccactataag tccttttgtg ctatttttat caataacagc ataaaagccc
     2701 attaaaacac aaattgcacc actagcgcct atgacattta tattttctcc aaaatattta
     2761 aaatcaaaat acacataaaa aacacttaaa agtgagcaca acaatccgcc aataaaataa
     2821 ataaaaataa aacacaaagc acccaaataa gtttctaaca tacgcccaaa ttgaaacaaa
     2881 actatcatat ttaatataag atgagttaaa tttccatgta aaaacattga acttaaaagc
     2941 tgccaataag ctccattaaa aaataaaata ttcaaaccaa ggatattgta at
//
LOCUS       DAQSLY010000151         2646 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.152, whole genome shotgun sequence.
ACCESSION   DAQSLY010000151 DAQSLY010000000
VERSION     DAQSLY010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.152"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..590)
                     /locus_tag="R2H98_001673"
     CDS             complement(<1..590)
                     /locus_tag="R2H98_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEE9024528.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLSNPFFIDVKKDLE"
     gene            complement(590..2398)
                     /gene="typA"
                     /locus_tag="R2H98_001674"
     CDS             complement(590..2398)
                     /gene="typA"
                     /locus_tag="R2H98_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEE9024529.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPINVRVRKRYLDPTQRKRMEKAKS"
BASE COUNT          818 a          500 c          383 g          945 t
ORIGIN      
        1 ctttctaaat ctttttttac atctataaag aaaggattgc ttaaagtagc aataagataa
       61 tgattttctt tagaaaaaac atgatttaaa gtgaaatttt tatcttgaag tttgatataa
      121 atttgctctt cattttcaaa gctaggattt ttgtttgcac ttaaaatttc gagcaaaatt
      181 ccgcaaaaaa agcgtttatt ttcgtccaaa aactgaatat cataaatttt aaaatcctta
      241 aattcaaagc agttttgact tttaaattct ttcaaatcct ttgtaagtcc taattttaaa
      301 aagtcttttt ggcttaaact ttgcttttta aattttgccc caaaacgacg caaaaataaa
      361 tttaaagcat taatttgtaa ttctttttgt gcgagtttta gttttttagc tgtaaaacga
      421 aagaaaaaaa cacctacaaa aacagctaaa attactgcga ttaaggcatc tcttataaaa
      481 acaaaggcta aaaaacctac aagtaaggct tcgataatgc ttaggaattt taagattcct
      541 aagcgtttaa gtatataaag tctattattt tctaagcttt ttaaatccat taagattttg
      601 ctttttccat tctttttctt tgagttgggt caagatagcg tttgcgaaca cgcacattta
      661 taggtgtaac ttctacaagt tcatcttctt ctatccactc taaagctctt tcaagactta
      721 attttctagg tggcacaagt ttgattgcat catcgcttcc acttgctctt acattggtaa
      781 gattctttcc tttgatagga ttaacatcta aatcatttgg acgagagtgc tcacctataa
      841 tcataccggt ataaacttta gtttgaggct ctatgaaaag tactccacgc tcttgaaggt
      901 taaacaaaga ataccctaaa gccacgccat tttccataga aattaacgct ccattattac
      961 gcttttcaac cgcaccgcta aaaggacgga attctaaaaa gctatgattc atcacgcctt
     1021 cgcctttggt atcagttaaa aactgacttc taaaacctat aagtccgcgt gctggaattt
     1081 caaactcaag tcttgtttgt ccatcgcccg ttggtgccat ggttttcatt tcagcttttc
     1141 ttttgccaag tttttctatt accgcaccgc taaattcttc aggcacatcg ataactaaat
     1201 gttcaaaagg ttctgtttta actccatctt caacttttac gataacttcg ggtcttccca
     1261 tgcaaaactc aaaaccttca cgacgcatat tttcagctaa aatagtgatt tgaagttcgc
     1321 ccctaccgct tactttaaat ttaccttcgc ctgtgctttc gtatttcata gcaatattag
     1381 ttttcatttc agcttctaaa cgttcagcga ttttatttga agttacatgt tttccttcag
     1441 ttcctgctaa tggtccatca tttacagaaa atactatgct taaagtcggc tcttcaatgt
     1501 gtaaaggatc aagtggcatg ggattgtttg gatctacaac gctatcgcca acatctaaag
     1561 cttcaaaacc tgctatagct acaatatctc cacttcctgc ttcttcaata tccatttttt
     1621 ctaagcccat aaaaccaatg agttttgaaa ttctaccatt tactttggtg ccatcagctt
     1681 ttgcaagcat tacgctttga tttttcttaa caaccccatt gaaaattcta gcaatgccta
     1741 ttttacctac gaaattatca taccctaaag tgaaaacttg aagttgtaaa ggattgtcat
     1801 ttgtaccact tggcgctgga acgcgttcaa gtatggtttt aaaaagtggc tccatattat
     1861 cactttcatc gtttagatca agcttagcat aaccattttt tgctgcagca taaactatag
     1921 caaagtcaag ttgctcatcg tttgcatcta gggctacaaa aagatcaaaa atttcattga
     1981 tcactctttc aggatcagca gctggtttgt cgattttgtt gattacaact ataggtttaa
     2041 gccctaaaga taaagctttt ttaactacga atttagtttg cggcataacg ccttcttgag
     2101 catctactaa aagcaaaact ccatcaatca tttttaaaac acgttctact tctccgccaa
     2161 aatcagcatg ccctggagta tctatgatgt tgatttttgt acctttgtaa ttgatcgctg
     2221 tgttttttga aagtatggta atgccacgtt ctttttctat atcgttgcta tccataacgc
     2281 gttctgaaat ttgttctctt tcgctaaagg tgcctgattg ttttaataat tcatctacca
     2341 tagtggtttt accatggtca acgtgagcta taactgctat atttctaatg ttttccaaat
     2401 tttcttctcc aaagctaaat ttttaaaagc ttagattata caaaaattta acttaaacta
     2461 caaagcatca aaacttggaa cacttcttgc tttaaagact tgtgaaatta aaattttaaa
     2521 aaggaagtta aaatgtcaaa accattaaat gaagagattt ttgttgaatt taaaagtgat
     2581 ctagctgaaa gaaaaaatga agttttgctt caagttttag agcttttaga aacttttaga
     2641 tcagat
//
LOCUS       DAQSLY010000152         2623 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.153, whole genome shotgun sequence.
ACCESSION   DAQSLY010000152 DAQSLY010000000
VERSION     DAQSLY010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.153"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            127..684
                     /locus_tag="R2H98_001675"
     CDS             127..684
                     /locus_tag="R2H98_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024530.1"
                     /translation="MTREQAELIIEEEKLIDTDWYPSYKHSGEYHLTMWFDSDNNKYE
                     AVYIGERGGVELEYSFDSEKEAIDKMLQMNYEQKKYNGKDIKEYLTKEVALRIIKEEK
                     LEVIWYDEALKPLCAGIKHDKQRDKYISFITNAKAELIEYRSIEFDGDRYSETFKEML
                     NDEFLALYALINRARMIKQNRISFV"
     gene            1169..1519
                     /locus_tag="R2H98_001676"
     CDS             1169..1519
                     /locus_tag="R2H98_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEE9024531.1"
                     /translation="MKFDRIRWEGGGGNNKQSSIQTHHIATDKNKRFTKEFRKITKKY
                     NMELDEDWNKVKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFLKEFEKLKEEVKN
                     NPAILHKDYYKERK"
     gene            1519..2085
                     /locus_tag="R2H98_001677"
     CDS             1519..2085
                     /locus_tag="R2H98_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024532.1"
                     /translation="MKYYKMMYNYNHNDVDNWYSCDLVDIKNNDEYALLESKPITNWQ
                     TPSFEIDKDDGNILTDLIHNDCGWRIVSPKFINLMQDLIKDCVQYLDVEIKSQEINYY
                     DCKIMHVIKSLEALDYEHSVYTYMGDNDEYLSITKAVLKKSKLDGSHIFRIKDDEVPV
                     FVSSEFRKIVRENNLLGFSFSEVMVYEN"
     gene            2170..2520
                     /locus_tag="R2H98_001678"
     CDS             2170..2520
                     /locus_tag="R2H98_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4299 family protein"
                     /protein_id="HEE9024533.1"
                     /translation="MEDLKLLQRRWEEAYEAMPKLYETPDGLIINFTLSEDTDTILFK
                     KPWENFELDDEDKETKWRLSFFSISKDEPLGYLEYKEALEKLQDFSLIQSEERILIRA
                     MSLEELESLELKGW"
BASE COUNT         1074 a          275 c          445 g          829 t
ORIGIN      
        1 aatttattag gttttagttt tagtgaagtt atggtatatg aaaattaatc atatgaaaat
       61 attgcaatta taaactatat aatttattag gttttatcaa acaaatacca taacaaagga
      121 tagaaaatga caagagaaca agcagaatta attatagaag aagaaaagtt gattgataca
      181 gattggtatc cttcttataa acattcagga gaataccatc ttactatgtg gtttgattct
      241 gataataata aatacgaagc tgtttatatt ggagaaaggg gcggtgttga acttgagtat
      301 tcttttgata gtgaaaaaga agctattgat aaaatgttgc agatgaatta tgaacaaaaa
      361 aaatacaatg gaaaagacat taaagaatat ctaacaaaag aagtagcact aagaatcatc
      421 aaagaagaaa aactagaggt gatttggtat gatgaagcac ttaaaccttt atgtgcaggt
      481 attaaacacg ataaacaaag agataaatat atatctttta tcactaatgc taaagcagag
      541 cttatagaat atagaagtat tgaatttgat ggggatagat acagtgaaac ctttaaggaa
      601 atgcttaacg atgaatttct agccctttat gctcttatca atcgtgctag aatgattaag
      661 caaaatagga ttagctttgt gtaaatactt tccttatgat ttaatttaat cttagcgagt
      721 ttaaaaaccc acaaggcttt tcatggctaa aaaaagaaca atccttattc ctagaataaa
      781 agatattaat ataagtcctg atacttcttg tatgcatcct atcttagaag ataatacttt
      841 agtatgctta catggaggta gagttaagtt aaaagcaaaa aaagctaaaa gaataaaatc
      901 agacaatgtt tctattatgc ttaataatga aatacaagga gccagtataa gtggatgttt
      961 aaacccacct atactaggag gaccttgtac taaagtagct atggtatttg cttatactta
     1021 ttcagatcat aaagttaata ataaacattc tgttttacaa atgggtttga taggaatgag
     1081 tataaaaggt tatcctatat ttgctatacc taaaaagaat aagattaaat ttgctttagc
     1141 taaaatacaa gctagtcctc ttgctaagat taaatttgat aggataagat gggaaggggg
     1201 aggaggtaat aacaaacaat catcaattca aacccatcat attgccactg ataagaataa
     1261 aagatttact aaagaatttc gaaaaataac aaaaaaatat aacatggaat tggatgaaga
     1321 ctggaataaa gttaaaatgc cacatcgcgg aagacatcct aatgaatatc atgaatatat
     1381 tcttgaaaaa atgagtaaaa ttgataaaat agcaagagga gataaggata aattcttaaa
     1441 agaatttgaa aaactaaaag aagaagtcaa aaacaatcct gctatacttc ataaagatta
     1501 ctataaggag agaaaataat gaaatattat aaaatgatgt ataactataa tcataacgat
     1561 gtggataatt ggtactcttg tgatcttgta gatataaaaa ataacgatga atatgcactt
     1621 ttagaatcca aacctatcac aaattggcaa acacctagtt ttgaaatcga taaagatgat
     1681 ggtaatatac tgactgatct tatacacaat gactgtggtt ggcgtatagt ctctcctaaa
     1741 tttataaatt taatgcaaga tttaatcaaa gattgtgtgc aatatttaga tgtagaaatt
     1801 aaaagtcagg aaataaatta ttatgattgt aaaattatgc atgtaataaa atcacttgag
     1861 gctttagatt atgaacattc tgtatatact tatatgggtg ataatgatga atatttaagt
     1921 attactaaag ctgttttaaa aaaatcaaaa cttgatggaa gccatatatt tagaattaaa
     1981 gatgatgaag tacctgtttt tgtatcaagt gaatttagaa aaatagtgag agaaaacaat
     2041 ttattaggtt ttagttttag tgaagttatg gtatatgaaa attgaaagac taaaagctat
     2101 aaaaaatttt gcaatttaat ataaaaagat ttttagttat aatttcattt tatatttaag
     2161 gaaaaattta tggaagattt aaaactttta caaaggcgtt gggaagaagc ttatgaagct
     2221 atgcctaaac tttatgaaac accagatggg ttaataataa atttcaccct aagtgaagat
     2281 acagatacta ttctttttaa aaaaccttgg gaaaattttg aattagatga tgaagataaa
     2341 gaaaccaaat ggaggctgag tttttttagc attagcaaag atgagccttt ggggtattta
     2401 gagtataaag aagctttaga gaaattgcaa gatttttctt taattcaatc agaagaaagg
     2461 attttaatta gagcaatgag tttagaagag cttgaaagct tagagcttaa agggtggtaa
     2521 tgcttcctca acctatattt ttaaataaac ttatagaatt tttatctgat gaaaatttag
     2581 atattgtaaa tatgaaaaaa ggtgtagata aaattttttc taa
//
LOCUS       DAQSLY010000153         2620 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.154, whole genome shotgun sequence.
ACCESSION   DAQSLY010000153 DAQSLY010000000
VERSION     DAQSLY010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.154"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..768)
                     /locus_tag="R2H98_001679"
     CDS             complement(<1..768)
                     /locus_tag="R2H98_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEE9024534.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWRLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIP"
     gene            complement(778..1548)
                     /locus_tag="R2H98_001680"
     CDS             complement(778..1548)
                     /locus_tag="R2H98_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEE9024535.1"
                     /translation="MNLFKIIILACTLNLSSLFAQNITIGVTPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            complement(1597..2370)
                     /locus_tag="R2H98_001681"
     CDS             complement(1597..2370)
                     /locus_tag="R2H98_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEE9024536.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIITKKGLVKFKDKALKTPLDIID
                     NPKKIKFIELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
BASE COUNT          804 a          381 c          396 g         1039 t
ORIGIN      
        1 agggataaca gagcctttgt atttttctat gataaaattt ttaattttat cgcttgttaa
       61 aatttcttta ataacaagac ttttttgact tgtttcttca ccttttcttg tagctaaaac
      121 aatagcatat aaactatctt tatcttccat aaaaatacca tcttttaaag ggtttaagcc
      181 tgctccaaga gcatagtttg tggtaataat agccaaatca gtatcattta gggctcttgg
      241 aagttgtgcg gctttaagct ctataaattt aagttttttt ggatttttac ttatgtcaat
      301 aggggtttta agggtgcttt gacttttaaa ttctattaaa tttgctttag ctagtaaatc
      361 aagggctctg ctttcattgg tagcatcatt aggtatagcg attttagcac cattaggaat
      421 gtcttttata tcttttatgg agttagaata tatagccata ggaactaaaa caatagcacc
      481 taaagaactt aaatttgttc ctttgtgggt attaaaatca tctaaaaaag gtttatgctg
      541 atataaattt gcatctaaat ctttctcatt taaagcgata ttaggtatat tatagtcatt
      601 aaattcctta actatcaacc tccaaccttt ttcttgaaat aagggtttag agaaatttaa
      661 aatttcagca taaggcgttg gtgttgcacc tatgattatg gttttatctg ccccaaaact
      721 aaggctaatt gtaaataaaa cacttaaaaa tattttttta atattcatgc tatactccta
      781 aaaagctggg attaatatat ctttataatg ttcattaatg atggctttaa atttatcgct
      841 tcttaaaatt tcatcaatta ctttggtttt ttcgctattt ttatcttctg agcgtaccac
      901 aacataattt acataagggc tatttttatc ttccctaaaa atagtatctt tacttggatt
      961 cagaccagct ccaagtgcga aattagaatt aattatagca atatcaacat catccaaagc
     1021 ccttggaagt tgtgcggctt taagctctat aaatttaagt ttttttggat ttttgtttat
     1081 gtccaatggg gtttttagag tatttttgtt aagctctatt aattttgctt tctctaaaag
     1141 ctctaaagct ctgctttcat tggtcgcatc attaggtata gcaactctag caccttcttt
     1201 aagattttct aaatttttga tttttttact ataaactcct actggagcta taagtacagg
     1261 cgttgttgca attaaatttg aacctttttt taggttgtat tcttctaaaa aaggtttgtg
     1321 ttgatataaa tttgcatcaa gttctttttc ctctaatgca cgattgggca aaatatagtc
     1381 tgaaaattct actattttaa gctcataccc tttgttttta aaatcatctt tcattagttc
     1441 tagtaagcta ccaaaaggat ttggagtgac tcctatagta atgttttgtg caaataggct
     1501 agataaattt agagtgcaag cgagtataat aattttaaat aaattcataa aaactccttt
     1561 gtatttaaga aaaaagtccc taggtaaggg acaaaattaa aaagcaggta aaacagatcc
     1621 gttgtatttt tctatgataa attgtttgat tttatcactt tgtagagctt ggattaaggc
     1681 tttgattttt ggatcgtttt catgtcccac tcttacaaca agaatgtttg catacgggct
     1741 ttctttatct tcgataaata cgctatcttt tgcaggattt agatttgcag agagagcgta
     1801 gttggaatta attacagcaa aatcaacatc atctaaagct cttggaagtt gtgcgggctt
     1861 taattctata aatttaattt ttttaggatt gtctataata tcaagaggtg tttttaaagc
     1921 cttatcttta aattttacca aacctttttt tgtaataata tctaaagctc tactttcatt
     1981 ggttggatca tttggaatgg cgattttaac cccttcttta atatcatcta gacttttata
     2041 tttcttggag taaacagcca taggttctat gtgtatggca gctactttga taagtttggt
     2101 gcctttgttt ttattaaatt cttccaaata aggagtgtgt tggaaaaaat ttgcatcggc
     2161 ttctccgtta tcaacagcta gattaggtaa aacataatct gtaaattctt tgatttcaag
     2221 tttatagcct tgtttttcta aatcaggttt tacttgttct aggatttcag catgagggac
     2281 gggagttgct gcaactgtga tggtttctaa tgcatttgca ttaagactta atgttaaaat
     2341 acttgctata aataaagatt tgattttcat ttttttcctt tttagtcatt ttgtgcttgc
     2401 tttaatctta ataaattcac tctgactatc aggaagaagc atataaaaac ttgttgatag
     2461 tcagattaac gcatctgata catcatttta attcctttaa ttttttgttt aaattttact
     2521 taaaaaaact tatatttatc ttaaaaggag atataatctc cttatttttt gaaaccttta
     2581 taaagcaaac ttcctaaaaa taagataaaa acaattactt
//
LOCUS       DAQSLY010000154         2478 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.155, whole genome shotgun sequence.
ACCESSION   DAQSLY010000154 DAQSLY010000000
VERSION     DAQSLY010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.155"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..819)
                     /locus_tag="R2H98_001682"
     CDS             complement(<1..819)
                     /locus_tag="R2H98_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEE9024537.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKAILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFILE"
     gene            complement(821..1507)
                     /locus_tag="R2H98_001683"
     CDS             complement(821..1507)
                     /locus_tag="R2H98_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEE9024538.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFDFKIKRFIKLIIDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            1586..2395
                     /locus_tag="R2H98_001684"
     CDS             1586..2395
                     /locus_tag="R2H98_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEE9024539.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKDFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
BASE COUNT          939 a          349 c          350 g          840 t
ORIGIN      
        1 ttctaaaata aaatcataat tattttttgg gatattttta gaattaaaaa aagaaatttt
       61 ataaggatca atcgcaattt tacttggagg ttttttaaaa tctttatatt ttttacaatt
      121 actaaaatct ataaaattac aaaatttcac accttgattt tctagttcaa aaacattagt
      181 attttcaaat tctaaaattt ctccactgtg taaataaagc tttttttgcg ccaaagaatc
      241 taaaaaatgt ttatcatgac ttgcgattaa aaaacctgta ttgaaatttt catgcatttt
      301 aagaatagct tttttaaata aaagtgtagt atttttatcc aaaaaagcac ttggttcatc
      361 aagtaaataa tacttcgctc ttacgcttaa agctatagca aaagctattt tttgactttg
      421 tcctgatgaa agttcattag gatgtttact taaaagactt tcatctaaat ttaaaaacat
      481 caaactttct tttatgcgtt cttcaatatc ttctttaatc ccataagttt ttaaggtaaa
      541 taaaaaattt gcccttacac tacgatttaa caaaataggc tctggaaaaa gcaaataaat
      601 ttcacgcttt tgtttattat taggtttaaa atttccaaaa taagaaatat tttttgaaaa
      661 atctccttct aaaaatttta atattcttaa aaatgtagat tttccacttc cattcgctcc
      721 cattaagatg ctaattttac ttgtatcaag ttttaaattt ttgattttta aaacttcttt
      781 gttttgatag ttgaaaaaaa gattagaaat ttctatcatt ttatgttctt ttgagtttgt
      841 gcgtgatgaa atttaaacaa aaggcaatga gaattaaaac caaagccaaa gctataccgc
      901 tagcaaattc gcctttgttt gtttcaagag aaatagctgt ggttatggtt ctagtatcgt
      961 atttgatatt tccacctact atcatcgcta ctcctacttc tgctacaatg cgtccataag
     1021 ctagtgcaac gacgctaatc aaagcaaagc gtaattcata aatcatcgtt aaaacaagtt
     1081 ttaaaggact taggtgaaaa gattttataa gtaaaaaatg ttttttattc atattttcta
     1141 tcaaatttga aaaaagtgcg atcactatag gaagcgctaa gataaactgc cctaaaatta
     1201 aagcctttat agtaaaaagt agtccaaatt ctcccaaagg tcctcgactt gaaatcagcg
     1261 cataaagtat aagtcctact gcaactgttg gaaaagagag gctagtatct atgataagtt
     1321 ttataaagcg tttgatttta aaatcaaaaa agcctaagat aaatcccaaa ggaaaaccta
     1381 taagcaaagc taaaactata gaaatacttg agcttaaaag tgtagttttt atagctgaaa
     1441 ttacgctttc atcagcattg aaaagtaaaa ataaagcctg tttaaaacca tcaaaaatat
     1501 aatccaaaaa tatccttttt aaaataagta attttagcat aattatgcta aaatattttt
     1561 ttatgtaaat ttataaggaa aaaaaatgaa aaaaatcatt tctttagccc ttgctttagc
     1621 tttaagtgca agtgcagcag aacttaaaat ggcaactaca acaagcactg acaatacagg
     1681 acttttagat gctctaaaac ctctttatga aaaagaaagt ggcaatacct taaaatgggt
     1741 tgccgtagga acaggtgcgg ctttaaaaat gggtgaagat tgcaatgctg atgtgctttt
     1801 tgtgcattct ccaaaggctg aaaaagaatt tatgaaaaaa gactttggcg tagatagaac
     1861 tcctgtgatg tataatgatt ttatcatcat cgcagataaa tctttagctt ctaaatttaa
     1921 aggtaaaaat ttaaaagaaa gcttagaact tatcaaaaat gaaaagctta ctttcatctc
     1981 aagaggcgat aaatcaggca ctgacaataa agaaaaaagc ctttggaaaa atcttggtgg
     2041 tgttcctgaa aagcaaagct ggtatcaaca aagcggacaa ggtatgttag caagcattaa
     2101 aatcgctgaa gaaaaaaaag gtgtgatttt aaccgatcgt ggtacttata tcaaatatga
     2161 agccaatgaa aaaggcaaac caaacttagt tattgtaaat gaaggcgatg atagtcttaa
     2221 aaatttttat tctgttatag cgacaaatcc taagcattgt aaaaatgtaa attatacaga
     2281 agctagtaaa tttatcaaat gggtaacaag tgataagact ttaaatttca ttgctgattt
     2341 taaacttctt aataaacctt tatttgtaat tgatgcaaaa acaagaaaag actaaaaatt
     2401 aagcaggttt taacctgctt aaaatatcat tttttactta ttgtaacttt tttatttatt
     2461 tttcaaaact tttagctt
//
LOCUS       DAQSLY010000155         2376 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.156, whole genome shotgun sequence.
ACCESSION   DAQSLY010000155 DAQSLY010000000
VERSION     DAQSLY010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.156"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            10..831
                     /locus_tag="R2H98_001685"
     CDS             10..831
                     /locus_tag="R2H98_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024540.1"
                     /translation="MSLSKLFDFYSVFEGFEKLNILNFEDDVFTNIERILLDDYLKIK
                     SYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTLKYLLETGIIKLEYSKEAKK
                     IKDKRQKIKKELRSYVVQDKIVFSNHFTRFFFYFLKPNEKLILQNRYKEVLECIKEKF
                     ELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYYQDENLCFVGEVKFKNKKIC
                     KNILNLLKSKVKSLNLTPNYYIIISKNGFSKEFDKICEQNLLLLDLNDFKILLEE"
     gene            835..1854
                     /gene="flgS"
                     /locus_tag="R2H98_001686"
     CDS             835..1854
                     /gene="flgS"
                     /locus_tag="R2H98_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEE9024541.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            1994..>2376
                     /locus_tag="R2H98_001687"
     CDS             1994..>2376
                     /locus_tag="R2H98_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024542.1"
                     /translation="MLSQAKANKESKENSKISFTNAFLKQNASKLNEIQNTNSQTLVR
                     SEVLNSTNTTNTSNNTNFSISSKTSSPNYNISSEFKNSIYTLKYKQADISTSTNTAYG
                     YSVDKDGYMGSDFNKAAGLPEDFKI"
BASE COUNT          924 a          283 c          372 g          797 t
ORIGIN      
        1 cataagaatt tgtctttaag taagcttttt gatttttata gtgtgtttga aggttttgaa
       61 aaattaaaca ttttaaattt tgaagacgat gtatttacaa atatagagcg aattttgctt
      121 gatgattatc taaaaattaa aagttatttc gccttggatg aaacaagttc ttacgctctt
      181 actttactag ctaaaaacaa tcgcaagcgt ttttctatca atagaaaaat tcagcatttt
      241 aaagctttat ctacacttaa atatctttta gaaacaggta taataaaact tgagtatagt
      301 aaggaagcta aaaaaataaa agataaaaga caaaaaatca aaaaagaact aagatcttat
      361 gttgtccaag ataagattgt atttagcaac cattttactc gtttcttttt ttatttttta
      421 aagcccaatg aaaagcttat tttgcaaaat cgttataaag aagttttaga atgcattaag
      481 gaaaaatttg agctttatca aagtttttgt tttgaacaac tttctagaga attgcttgag
      541 aaaaaattca atatcaatgg agtgcaaagc tactgggata agaatttaga acttgatctt
      601 tattatcaag atgaaaattt gtgttttgtc ggagaagtta aatttaaaaa taaaaaaatt
      661 tgtaaaaata ttttaaatct tttaaaatca aaagtaaagt ctttaaattt gactccaaat
      721 tattacatta taatctcaaa aaatggtttt agcaaggaat ttgataaaat atgcgaacag
      781 aatttgcttt tacttgattt gaatgatttt aagattttat tagaggaatg ataaatgaat
      841 gaaagtattt taaaaagttt agactcaaat gaaaaagaaa ccctacaaaa aggcttagaa
      901 agtcttatag aacaaactta tgtaatagaa aatgaataca aaactttaaa tgaaaactat
      961 aactccttac gcgcaatggt tgatgagatt atagaggtgt tgcctagtgc gctttggatt
     1021 ttagataaag aaaaaaatat tattttacaa aatcaagaag ccttgaaaaa tccaaaatta
     1081 cttagtatca ttagtcttga taaaattcgt gatgagcttg aatttgaagg taggttttat
     1141 gcggtaaaaa tcatagcgca taatgaaaaa actatagttt cagctacaga tattagcgat
     1201 gaaaaacgca atgaaaggct tgcaagcatg ggtagtgtag cggctcattt ggcacatgag
     1261 ataagaaatc ctattggatc tatatcttta cttgcttcaa ccctttttgc tcgtagtgag
     1321 cttaaaaata agcatatagt tcttgaaatc caaaaggcta ttgctagagt ggagcgtatc
     1381 gtaaattcaa ctctactttt tactaagggt gtacacatca atgctttaaa ttttaatctt
     1441 ttagagttaa aagaagagtg tgaaagtgcc attaactctt ataatttcac ttctcaaata
     1501 gactttgaaa tatctttttt ggataagcag atttgtgctg ataaagctct tcttggtttg
     1561 gttttgcaaa atttgattta taatgctatt gatgcgatag aagaaagcga atgtgaaaag
     1621 cctatgatta aaattttagc aagttatgat aatgaaaaaa tatgcatcag agtgtatgat
     1681 aatggttgtg aaataaaaga tgagaaattg gtttttgaag cttttaaaac aacaaaactt
     1741 aaaggcaatg gacttggctt gtctctttct aaagaaatca taaacgctca taagggagag
     1801 ttaagttttc aaagtgatcc taagaatttt tattttacct tacctttggt gtgataaata
     1861 ttttcttttc accccaaagt ggaacagatc ttgcttatat tattttaata tatttaggtt
     1921 gaaggcaaaa aatctaaatc aaggaattaa tatgagtatc tttagtatca atgataactc
     1981 aaactatggt tctatgcttt cacaagcaaa agctaataaa gaaagtaaag aaaattctaa
     2041 aataagtttt actaatgctt ttttaaaaca aaatgctagt aaattaaatg aaattcaaaa
     2101 tacaaattca caaaccctag taagaagtga agtattaaat tctactaata caacaaatac
     2161 tagcaataat actaatttta gtataagtag taagacaagt tctcctaatt ataatatatc
     2221 aagtgaattt aaaaactcta tttatactct aaaatacaaa caagcagata taagcacttc
     2281 taccaataca gcctatggtt atagtgtaga taaagatggc tatatgggaa gtgattttaa
     2341 caaagccgca ggattacctg aagattttaa gataca
//
LOCUS       DAQSLY010000156         2341 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.157, whole genome shotgun sequence.
ACCESSION   DAQSLY010000156 DAQSLY010000000
VERSION     DAQSLY010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.157"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..204
                     /locus_tag="R2H98_001688"
     CDS             <1..204
                     /locus_tag="R2H98_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEE9024543.1"
                     /translation="FKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVKDFGFKCQII
                     ELNIELKDSLREKIKTYIKEFEQ"
     gene            201..1613
                     /locus_tag="R2H98_001689"
     CDS             201..1613
                     /locus_tag="R2H98_001689"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEE9024544.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLREFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNKIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFVKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKNIKKEILDWMQK"
     gene            1610..2329
                     /gene="kdsB"
                     /locus_tag="R2H98_001690"
     CDS             1610..2329
                     /gene="kdsB"
                     /locus_tag="R2H98_001690"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEE9024545.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINEACKKLSLKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDSNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLLSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYEKALKIYLEK"
BASE COUNT          890 a          263 c          435 g          753 t
ORIGIN      
        1 tttaaagatc attatgagtt taaaaaagaa gaattagaaa atttgctaaa aaaacataat
       61 tgcgatacac taatgcttac ttttaaggat tttgttaaag ttaaagattt tggttttaaa
      121 tgtcaaatta tagaattaaa tatagaatta aaagattcat taagggaaaa aataaaaact
      181 tatatcaagg agtttgagca atgaaattag tcgagagtag aaatgtaaat aatgtatcaa
      241 gttttaagga agctttgatt aacccaaacg ccccagaagg agggctttac tcgcctttaa
      301 atttgcctat ttttgaagga gaaaaatatg ccaatttgtc ttataaagat tttgctttaa
      361 agcttataga aagttttggt tttggcgaag aagagctttt taaaaaggct ttgaaaagtt
      421 acgaaagctt tgatgataaa aatacaccta tttctttgca aaaaatctct gaaaaaacct
      481 atattaacga gctttggcat gggcctacaa gagcttttaa agatatggct ttacagcctt
      541 ttggcgtgct tttaagagaa ttttcaaagg ataaaaatat tttaattatt tgtgctacga
      601 gcggcgatac aggacctgca accctaaaaa gctttgaaaa tgcaaaaaat gttaaagtag
      661 cttgtatgta tccaaaaggt ggcacaagtg gagttcaaga gttgcaaatg cgagctttag
      721 ataaggataa tttgaaagtt tttgctatag atgaggattt tgacgcagcg caacgcactt
      781 taaaagaatt gcttttttca aaagattttc aaaacaaaat taaagcttta aattatgagc
      841 tttgcgcagc gaattctgta aattttgggc gtattttatt tcagattatt tatcattatt
      901 atgcgagttt aaaacttttt aatgagtttt tagaagaagt acaaatcatt gttccaagtg
      961 gaaattttgg caatgcttta ggagcttttt atgctaaaaa aatgggagct aaaatttcaa
     1021 aaatcaaaat cgcttcaaat gtgaataata ttttgagtga attttttaat catggcgttt
     1081 atgatttgcg tgaaaaaagt cttaagaaga ctatttctcc agctatggat atacttattt
     1141 catctaatat cgaaagactt ttgtttgtga aatttaaaga taaaagaacc aaagaactga
     1201 tgaatttgtt gaaaaatgag agatatttta aacttgaaaa agaagaattg caaagtttac
     1261 aagaagattt tgaggcggat ttttgcaccg atgaagaatg tatgcaattt atcaaacaaa
     1321 gcaagatttt aatcgatccg cacaccgcaa cttgttttaa aatgcttgat cctttaaaac
     1381 ctagcattat tacctctaca gcagaatgga caaaatttac tccaagtatg ataaaagctt
     1441 tatacgatag ggattctaag aatgaaaaag aagatttaaa atttatagct aaagagttta
     1501 atgtccaagt taaagatgaa attttggctt tatttgactt gaaaaatagc gatgaaaagg
     1561 tatttgaagc caaaaatata aaaaaagaaa ttttagattg gatgcaaaaa tgattattat
     1621 tcctgcaaga ttaaaatcaa gtcgttttca tgagaaaatt ttatgtgatg taggtggagt
     1681 gcctatgttt gtggctactg caagaagggt aagtagtgtg gatgaagttt gtatagcttt
     1741 agatgatgaa aaggttttaa gtatcgctaa agaatatggt ttaaatgcag ttttaacaag
     1801 caaaaatcat gaaagcggta cggataggat taatgaagct tgtaagaaac tatctttaaa
     1861 agatgatgag attattatca atgtccaagc tgatgagcct tttatagaat gtgaaaattt
     1921 attaaaattt aaagaatttg caagttcttg cttggataaa aaagctttta tggcgagttg
     1981 ttataaaaaa atcactcaag aagaagctat ggattctaat ttggttaaag tgctttgcga
     2041 taaagaagga tatgctttgt atttttcaag agctaaaatc ccttatgaaa gagaaaatta
     2101 cgaggaaagt tttaaagggc atttaggcat ttatgcttat agtgtaaaag ctttaagaga
     2161 gttttgttct ttattaagtt ctgcacttga aagagcggaa aaattagagc aattaagagc
     2221 tatagaaaat ggtaaaaaaa tcaaaatgct tgaaatttca acaacaagca tggggattga
     2281 taccaaagaa gactatgaaa aggctttaaa aatttattta gaaaaataac tccaccccaa
     2341 a
//
LOCUS       DAQSLY010000157         2333 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.158, whole genome shotgun sequence.
ACCESSION   DAQSLY010000157 DAQSLY010000000
VERSION     DAQSLY010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.158"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..247)
                     /locus_tag="R2H98_001691"
     CDS             complement(<1..247)
                     /locus_tag="R2H98_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEE9024546.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITD"
     gene            complement(260..1348)
                     /locus_tag="R2H98_001692"
     CDS             complement(260..1348)
                     /locus_tag="R2H98_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEE9024547.1"
                     /translation="MPADLNDYFNKKNRNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FIYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSSANIN"
     gene            complement(1361..2275)
                     /gene="ilvE"
                     /locus_tag="R2H98_001693"
     CDS             complement(1361..2275)
                     /gene="ilvE"
                     /locus_tag="R2H98_001693"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEE9024548.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
BASE COUNT          709 a          398 c          361 g          865 t
ORIGIN      
        1 gatctgtaat agcgattttt cgagttctta cttcattgtc tattagttta tacccataga
       61 tataaactaa aaaacaaata ataatatcaa atgcaataat aaaaagtgct gctataggtc
      121 tatggcgtaa aaatacgcaa agaagtaaaa cacaagtgaa gagaaaaaaa actaataaaa
      181 tcagcatata atctactaaa tataaatgag tagtgtaaaa aagcacaatt tctcttagtt
      241 tctccacttg cgtatccttt tagtttatgt tggcagaact ttgcttttta gcatctttgg
      301 tatcaaccca aatgtttggc actgctccac ctggagttaa gaaaatttta gcatcttgat
      361 tgacttttaa ggcttcatta aattcttttt gagtttcaat ttgttttaaa tttagcaaag
      421 gggtgtttaa gctgtttgcg atttctttat tagaataagc ttgtgcatct gcttctatct
      481 taacagccat agctttacct ttggcgctga ttatggttgc atttgcttcc ccttcagcta
      541 aagcagcttt ttttaaggct tcttgattag ctctttctac ttcatattta gttctttcag
      601 cctcttgttt tgcaatttgt acgcgttcga tttgttcttt tacttttgaa ggtaaaataa
      661 tttctctaag ttgtacagcg cgaagttcta caggttcgtt tggttgggct tctatggttt
      721 ttcttatacc ttcttctatt tgagcggcta ttgtattacg attagtagga agttcttcgg
      781 ctgtatattt tcctacaaca cttcgcacta catcacgaac aactggatcg ataattttat
      841 tttcccaatt taagctccaa gtagctatag tttgaggaac ttgcagagga tttaagcggt
      901 attgtactgt aacatcaata gatacaggca atccacgaga gtcaagcaca gaaatactat
      961 ttttattaat aacacctgaa cctgaagata aattttcatt acttccctct atagaagcat
     1021 agttgatttg tcttactcta gtatcgatta tggttatttt ttgtacaaaa ggtaagaaaa
     1081 agtgaagtcc tggttctaat ggatttgggt catatttacc tgttgttgat ttaattccca
     1141 tttccccaga atttatcacc ataaaaggtt ttgcaacgat taaaaataag ataataataa
     1201 tcaccccata aataaatgga gagaattttc caaaaccttt aaaattaaat tctggtgctt
     1261 tgaaattgaa attttgacgg ttgttgtttc cgttattgtt agaatttcta ttttttttat
     1321 tgaaataatc atttaaatca gctggcattt atttcctttt ttaaatataa gttagcatag
     1381 atgcgtattt ttcattgcgt ccataaacta catcaaaata agcatcttga agttttttag
     1441 ttacagatcc tcttaaacca tttcctatta ttcttgcatc aatgttgtta ataggtgtga
     1501 tttcagcggc tgttccggta aaaaatgctt catcagcagt ataaacttca tctcttgaaa
     1561 ttctttggcg aagcacggtg ataccaagat cgtgagcgat tttaagcact gtatcttgag
     1621 taatgctttt taaagaaaaa tcatttggag gtgtgattaa aaccccatct tttacaataa
     1681 agaaacattc tcctgttcct tctgcgataa aaccttcttc atcaagcatt aaagcttctt
     1741 catagcctgc ttcaatagct tcaaattttg caatttgaga gttaaggtaa ttcgcgcttg
     1801 ctttagcttt tcccatgcat gatttaacac tatttcttgc aaaagacgaa atttttactt
     1861 ttatgccttt ttctaaacct tcttctccaa ggtaagcacc ccattcccaa gccgcaattc
     1921 caactcttac aggagctttt atatgataaa gtcccataac tccatcgcct aagaaaatca
     1981 aagggcggat atagacattg cttttaaaat tgtttgcttt taagagttca atttgtgcat
     2041 tttcaagctc tttttgagaa aaaggacaat ttaaaagagt aatttttgca gactctaaaa
     2101 gtcttttggt gtgatcttca agtctgaaaa ttgctaagcc tttatctgtt ttataggctc
     2161 tagttccttc aaaaacagca ttgccataat gcaaagaatg ggttaaaaag tgcaaagttg
     2221 catctttaaa atcaactaat tttccatcca tccaaatttt atctgctgag atcatttttt
     2281 taccttttat agttgtttat ttcttaaaaa atattatttt aagaataaat cgg
//
LOCUS       DAQSLY010000158         2322 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.159, whole genome shotgun sequence.
ACCESSION   DAQSLY010000158 DAQSLY010000000
VERSION     DAQSLY010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.159"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..503
                     /locus_tag="R2H98_001694"
     CDS             <1..503
                     /locus_tag="R2H98_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEE9024549.1"
                     /translation="DIAKKYLPFAPLLLSLRRPKTHIERVLQVNFKLKDKLSIIENLP
                     HQILISNSQKNNLGIKNNILGNNFILGDKFISYQNKIAIYIKDISYQEAVKFMPNGTK
                     HDDLKNSIMFLTNNEFCVDLYLKINYSSEMKFVLGEENTAKLGWAKILGNTQKKYTIV
                     YMKLCE"
     gene            654..2069
                     /locus_tag="R2H98_001695"
                     /pseudo
     CDS             654..2069
                     /locus_tag="R2H98_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049860.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          926 a          329 c          268 g          799 t
ORIGIN      
        1 acgatattgc aaaaaaatat ttaccatttg cacctttact actaagttta agacgaccta
       61 aaacacacat tgaaagagtt ttacaagtca attttaaact taaggataaa ttatcaatta
      121 ttgaaaattt accccatcaa attttaattt caaattcgca aaaaaataac ttaggaataa
      181 agaacaatat tttaggaaat aattttatat tgggcgataa atttatctct tatcaaaaca
      241 aaatagcgat ctatataaag gatatttcat atcaagaagc ggttaaattt atgcccaatg
      301 gaaccaaaca cgatgattta aaaaatagca taatgttttt aacaaataat gaattttgtg
      361 ttgatttata tcttaaaatc aactattctt cagaaatgaa gtttgtgtta ggagaagaaa
      421 atactgccaa acttggttgg gcaaaaattt taggtaatac gcaaaaaaaa tatacaatag
      481 tatatatgaa actatgtgaa taagctaaca caaaaatatg tttaaaaaaa tcacaatctc
      541 tcttcaccca taaaccatac cctaaaataa actttatttt acccacttta tgctaaaata
      601 aatcacataa gcttataggc tattaatcat caacaaaccc aaaaggatca tcaatgtccc
      661 ttaattctta catgagtctt aatatatcaa attctacttc aaatccccta ccctttaaaa
      721 tcactaaagc cctcatcaaa gaaagtcttg aagagctttt ttctatagaa tgtgaaggct
      781 tttttgaaag tttagaacaa gatttatttt ctttaaatac tttaaccaat gcttcatctc
      841 atccaagcac ccctacaact tttaattttc atcctaatgt tttaatcgat caagaagcta
      901 ttttaagtat ccataatcct tatgagaata ataccttaaa ctttgataac aatgaagtaa
      961 aaaactataa gggaattatc acttatataa aatatctagg tattaatcat gaaagtgctt
     1021 taaatattaa tgatagcact tcaaatacta agcaaataca atacaagcat tttttttctt
     1081 ttaagcttca atcagtcttg ataagacttt ctttaaataa agccaatcgt atttatactc
     1141 atactaatat tatagaagtg attaaacaaa cccttggttt ttatcaagat atcttacata
     1201 aagaaattga ttattctaat atacatttta attatgaaga acaagaactc atctctcaat
     1261 acaatgaaag tgatttagac tttattacaa gattaagcca taataatgga atcttttttt
     1321 atgaagatga gaacactatt tatttttgtg atgtgtataa aaatgtaaaa aataaagaaa
     1381 ttgagtataa tcctaatatt aataatattt taaatcaagc ttgtatttct tctatttata
     1441 aagagcaaag cttaagaact aattctttta cacattctag tattaatgcc aatactcctt
     1501 taaatctttt atctttacac tctagtaaag ttccttatga acaagaactt aataacaaag
     1561 cttgttataa tgaacatttt tatgagagtg aatattcttt tacaaaaagc attgatttaa
     1621 agactaagcc ttctcttaaa gaaaaaagag ccttagtatt aaatgaaagc ttactagcaa
     1681 aaagtaatat ttatcatctt agcttaggag attttatcac tttaaattat aaggagttta
     1741 atcatcaaga agaaataaaa aatcaagatg aagaaaaaca agataaagct tctttgctta
     1801 aagactttat tattatcgct aatactcaaa tcttaattga tgatgccatc ttagctaatt
     1861 ctattaatac taatgatcat ttaaatttaa aagatttaaa tttaagtaaa tcttattcta
     1921 atactttaac tttactaaaa aagaacatta tctttactcc aagttttaaa gctaaaccta
     1981 aagctcctaa tagcactcaa ggtattgtta taggagagag taaggatata gaaagtgaga
     2041 gaaatactat ttatactgat gagcatggaa gggttaaggt aaggattaat ctttatgcca
     2101 atcaagaaga attagataat gatactttta ttgcaaatga tatagataca aattcttcta
     2161 atttatcaag caatacttat aaatcttatc atcacactcc ttttttaaga gtagcttctc
     2221 atatagcaag taatcattca ggtttttttc atactccaag aataggagat gaagtgatta
     2281 tttctttttt agatgatgat atagataaac cttatgtaag tg
//
LOCUS       DAQSLY010000159         2292 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.160, whole genome shotgun sequence.
ACCESSION   DAQSLY010000159 DAQSLY010000000
VERSION     DAQSLY010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.160"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            1..2085
                     /gene="ccaA"
                     /locus_tag="R2H98_001696"
     CDS             1..2085
                     /gene="ccaA"
                     /locus_tag="R2H98_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEE9024550.1"
                     /translation="MGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTEDILASIT
                     KEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNF
                     TYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQD
                     ILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLDFSDIAT
                     YLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGKN
                     GVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFIF
                     VVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRIIN
                     ENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKNVLNRMLDV
                     LQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFAK
                     DLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDI
                     KNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEA
                     NINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIA
                     AAILEDVNKKRF"
     gene            2196..>2292
                     /locus_tag="R2H98_001697"
     CDS             2196..>2292
                     /locus_tag="R2H98_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEE9024551.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEI"
BASE COUNT          865 a          282 c          399 g          746 t
ORIGIN      
        1 ataggtttaa aacttatttt ttctgtggca gctgttgttg ttattggact tgttatttta
       61 atttcattaa tcacaaaaca agtaagtcaa aatattacca aaaatacaga agatattctt
      121 gcttctatca cgaaagaata tgctactcaa actcaaggaa tttttgggga aatgatcgct
      181 ttaaataaaa gtatttcagg tactttaaca gaaatgttta gatcaacctc taaagaagat
      241 ttagatatag acaatataac aaatattata accaatactt ttgataatag tgcttattct
      301 aattttactt atttatatct tattgatccg ccagaatact ttaaagaaga gagtaaattt
      361 tttaatactc aaagtggaaa atttgttatg ctttacgctg atgaagaaaa ggataataaa
      421 ggcggaataa aagcaataca agctagtgat gaaatagcta atctgcaagt tgtgcaagat
      481 atattaaaaa aagcaaaata tggggaaaat aaagtatata taggccgtcc tattaagatg
      541 aatttagaag gtcaagattt tgatgctgta aatgttgcta tgcctatttt tgatcgaaaa
      601 aatcaagttg taggtgtcat aggcatgact ttagattttt cagatattgc tacttatctt
      661 ttagacccta aaggtcaaaa atatgatggt gaattaagag ttcttttaaa ttcagatggt
      721 tttatggcga tacatccaaa taaaaatcta gttttaaaaa atttaaaaga tatcaatcct
      781 aataaaggtg cacaagaaac ttataaggcc ataagtgaag gaaaaaatgg agtttttaac
      841 tatatagctt ctgatggtga tgattcttat gctgcgatta atagttttaa agtgcaagat
      901 agttcttggg cagttttggt aactgctcct aaatattcag tatttaaacc cttaaaaaaa
      961 ttacaattaa ttattcttgg tgcatctttt atttttattt ttgttgtttt aggagtggtt
     1021 tattattgcg taagaaaaat tgtcgcatct agattgcctg tgattcttag ttctttagaa
     1081 tcatttttcc gttttttaaa tcatgaaaaa attgaaccta aggctattga aattcgtgct
     1141 aatgatgagc taggagcaat gggaagaatc ataaatgaaa atattgaaaa gattcaaata
     1201 tctttagaac aagatcaaaa tgctgtagat gaatcggtgc aaactgctag agaaatcgaa
     1261 aagggtaatt taactgcaag aattactaaa aatcctataa atcctcaatt agtagaactt
     1321 aaaaatgttc ttaataggat gcttgatgtt ttacaaagta aaattggttc taatatgaat
     1381 gaaattaata gagtttttga tagttataag gctcttgatt ttagtacaga agtatttaat
     1441 gctaaaggtg aagttgagat tacaactaat attttaggca aagaaattaa aaagatgctt
     1501 ttggcttctt caaattttgc taaagattta gccaatcagt cagaagagtt aaaaaattct
     1561 atgcaaaaac ttgctgatgg ctctaatgca caagcgagtt ctttagaaca atcggctgca
     1621 gctgtggagg agattaattc ttctatgcaa aatgtaagtg gaaaaacagt tgaggttgct
     1681 tcacaagctg atgatataaa aaatattgtc aatgtgatta aagatatcgc tgagcaaacg
     1741 aatcttcttg ctttaaatgc agctattgaa gctgcacgtg ctggagaaca tgggcgtggt
     1801 tttgcagttg ttgcagatga ggtaagacag cttgcggaaa gaacaggaaa atccttatct
     1861 gaaatcgagg caaatattaa tatacttgtt caaagcgtaa atgaagtagc agaatctgta
     1921 aaagaacaaa cagcaggaat cacacagatt aacgatgcta tagcacaact tgaaactgta
     1981 actaaggaaa atgtcgaagt tgcaaatgtc accaataata taacaaatga agtcaatcaa
     2041 attgctgcgg caattcttga agatgtgaat aaaaaaagat tttaaaaaag ctcatttttg
     2101 agcttttaaa ttttttctat attatttaaa atttttaaac acaaaacaag taataaaata
     2161 atattatttt tcaaagctaa tatcaaggaa aaataatgaa aattgattgt cgcaatctat
     2221 cttgtcctca gcctatagtt gaaacaaaaa acgctcttga aaaacttcaa gaaaatgaaa
     2281 ttttagaaat tg
//
LOCUS       DAQSLY010000160         2286 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.161, whole genome shotgun sequence.
ACCESSION   DAQSLY010000160 DAQSLY010000000
VERSION     DAQSLY010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.161"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            46..1335
                     /locus_tag="R2H98_001698"
     CDS             46..1335
                     /locus_tag="R2H98_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEE9024552.1"
                     /translation="MYFLFIPYFLFLAFPLYSLAYFALIHTPILYFWNKGIDKKLVFT
                     SKVKWFFVFVFVYNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAK
                     LRANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNNLSQ
                     DTQIYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNS
                     KRLEKAFLHSSTQKEGDKLISLYDEKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDF
                     NAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGM
                     STSYKLCKSYKGRKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKEL
                     KIKTIILKEKSQLVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(1393..2205)
                     /locus_tag="R2H98_001699"
     CDS             complement(1393..2205)
                     /locus_tag="R2H98_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024553.1"
                     /translation="MAETIKQYYNLFSNALGQSFPNDKTSFSEADINSMPKGYAINGI
                     KSMDFNDPGNRMNITHLRDFSNSSIANIYQTPEQMKEAESLYIQSGSLIDGINGHSFG
                     LSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKSYGSGQPVESPKTTL
                     NPKVEAYNRAMAKESFNGDSIALNDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVA
                     WQNTSIGYGGAWFDNQFNQTKANGWKASNQSINSYVGSIMDRLNNLIGQTRV"
BASE COUNT          770 a          375 c          316 g          825 t
ORIGIN      
        1 aaatttaaac gcgtgttttt tcattatcat aaacctttat ggcatttgta ttttttattt
       61 atcccttatt ttttattctt agcttttcct ttatactctt tggcatattt tgcattgatc
      121 catactccga ttttgtattt ttggaataaa ggcatagata aaaagcttgt ttttacaagt
      181 aaggttaaat ggttttttgt ttttgttttt gtttataatg ctatttttac catccttgct
      241 ttgcgttttt cttttctttt taatcttttt agtcttcctt ttgctttatt gagtcttaaa
      301 atttatgagt tttttacaaa tttatattat aaaaaacaag ccaaagccaa actaagagcc
      361 aatgaaaatt taaaaatcat actcattacc gcaagttttg gaaaaacaag tattaaaaat
      421 tttttatacg aacttttaaa agatgacttt aaaagctaca aaacaccacg atctgtcaat
      481 accttgctag gtatagttgc tgatatcaat aacaatttaa gccaagatac tcaaatttac
      541 atagctgaag caggtgctag acttaaaggc gatattgatg aaatcactcg ttttttacaa
      601 cctcacatca gcatagtagg agagataggc aatgcacatt tagagtattt taaaagtgtt
      661 gaaaatatcc gctcaaccaa acttgaagcc ttaaattcca aaagactaga aaaggctttt
      721 ttacactcta gcacccaaaa agaaggagat aaactcatca gcctttatga tgagaaatta
      781 agtcttattc attcaagtct tgaaggttta gaatttaaag tcgatataga aaataaatcc
      841 tatgatttta aaagtcaaat tttaggggat tttaatgcgc aaaatctttg tgtttgtata
      901 ctttgtgctc attatcttgg cataaaacta gaaaaaattc aaaagcaagt tttaaatata
      961 aattccgtag aacatcgctt gcaagtgctt tcaagagagc ctaaatttat catagatgat
     1021 ggttttaatg gaaattttaa aggtatgagc acaagctata aactttgtaa aagctataaa
     1081 ggacgcaaag ttttagtaag tcctggtata gtagaagtaa gcgaagaaga aaatataaaa
     1141 cttgctaaaa tcatcaatga gtgttttgat cttgctatca ttagtgcaca aatcaatgct
     1201 gaaattttca aaaaagagtt aaaaataaaa accattatac ttaaagaaaa gagtcagcta
     1261 gttcaaactc tagctaaaga aacaaaacat ggagatttga tactcttttc aaacgatgca
     1321 cctagcttta tgtgatttgc ataagtattt gcaaatgtca tcatttttaa tttgacttcg
     1381 tgcaaatact tcctaaaccc tagtctgccc tataagatta ttaagtctat ccattataga
     1441 tccaacataa gaattgatac tttggttact tgctttccaa ccattagctt ttgtttgatt
     1501 aaactgatta tcaaaccaag ctccaccata acctatactt gtattttgcc aagcaactcc
     1561 tttttccatt gcatatatat ctgcatcaag ccagccatct tgtgcataac cttttaacaa
     1621 acttgcaaaa tcaactttgc ctgtcataat gtcatttaaa gcaatgctat caccattaaa
     1681 actttcttta gccatagccc tattgtaagc ttctactttt ggattaagtg tggtttttgg
     1741 actctcaaca ggttgtccgc taccatatga ttttaaaaaa ctcataaata aagcttcttt
     1801 agaatagctt ccatcttcat tttgcggata aactgacata tcaggattaa attgccaatc
     1861 ttcaccttta gaaacatttt tgatttcttc caaagataaa ccaaaactat gtccatttat
     1921 gccatctatt aaagatcctg attgtatata taaactttca gcttctttca tttgttcagg
     1981 ggtttgataa atatttgcaa tagaagaatt tgaaaaatct cttaggtgag tgatattcat
     2041 tctattgcct ggatcattaa aatccatcga ttttattcca tttatagcat accccttagg
     2101 catagaattt atatctgctt cactaaaact tgttttatca tttggaaaac tttgacctaa
     2161 agcattagaa aaaagattat aatattgttt tatggtttca gccatatcga tattagtata
     2221 atactcgctt acgcctaagt attcttttgt acttgaaaca acaggatcat tttcagcagc
     2281 tttttt
//
LOCUS       DAQSLY010000161         2270 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.162, whole genome shotgun sequence.
ACCESSION   DAQSLY010000161 DAQSLY010000000
VERSION     DAQSLY010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.162"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..723)
                     /locus_tag="R2H98_001700"
     CDS             complement(<1..723)
                     /locus_tag="R2H98_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEE9024554.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDKGKIIE
                     ENDPKSFFKNPKSERAKKFLNLF"
     gene            complement(725..1381)
                     /locus_tag="R2H98_001701"
     CDS             complement(725..1381)
                     /locus_tag="R2H98_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024555.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(1374..2075)
                     /locus_tag="R2H98_001702"
     CDS             complement(1374..2075)
                     /locus_tag="R2H98_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEE9024556.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACVIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(2091..>2270)
                     /gene="nssR"
                     /locus_tag="R2H98_001703"
     CDS             complement(2091..>2270)
                     /gene="nssR"
                     /locus_tag="R2H98_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEE9024557.1"
                     /translation="LENEKNLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDTKKG
                     RIEILNKDMIMKELW"
BASE COUNT          853 a          436 c          255 g          726 t
ORIGIN      
        1 aaataaattt aaaaatttct ttgctctttc gctttttgga tttttaaaaa aacttttagg
       61 atcattttct tcgatgattt ttcctttatc cataaaaata attttatctg ctacagcttt
      121 agcaaaaccc atttcatgag taacaataag catagtcata ccctcttttg caagatttaa
      181 catcacttct aaaacttctc tgacaatctc aggatccagc gctgctgtaa cctcatcaaa
      241 aagcattaac tcaggattca tgcataaact tcttactatg gcaattcttt gcttttgtcc
      301 tccgctaagt tctcttggat aagcatgaat tttatgcaaa agccccacct tttcaagcca
      361 aattttagcc tcttttaaaa cctcatcttt ctttcttttt tgcactttca taggccctag
      421 aagtatattt tcttcaacac ttaaatgctc aaaaagctca taagattgaa aaaccatacc
      481 aactttttga cgcattcttg gccattcttt aaaatcttta tctattttct cattatcaat
      541 ataaatatta ccacttgcaa tctcttcaag cccattaata caacgcaaaa gcgtagattt
      601 tccacatccg ctaggaccta aaatcaccac aacttcttta gccttaactt ctaaattaat
      661 atcttttaag gcgtgatgcg aaccataata cttttgtaaa ttttctattt ttagtatact
      721 cattttagct ccattttttc tctaattttc ttgaatataa agtgatagga taacaaagta
      781 taaaaaagat aaaaaaaatc aaaccataaa taataaaagg tgcaaaatca tttctattat
      841 gaaattctat aatttgttgc cctactttta caagctctac cgcgccgatt aaataagcaa
      901 aggttgtact tttaatcata cgagtaagta aattcatgct cataggagtt aaacgacgca
      961 tagcttgtgg aataataaca taagcaaaac tttgcaccgt atttaaacct aaagatgatg
     1021 cactttcata ctgatgtttt ggaatactct gcaaggaaac acgcaccaaa tccatcatct
     1081 caaaacaacc ccaaatgcta aaaacaataa tagctgcact tacagaactc aaatcccacc
     1141 caaaccatct aggaaaacca aaatacacca caaaaagcca tactaaaagt ggcataacac
     1201 gcacaaattc taaacccaaa cgacaaaaag catagatata ggtattttta aaactcatta
     1261 aaattcctaa aaataaccca cctatcgaag taataataat gctgataaat gaaatttcaa
     1321 gagtgacaaa aagcccttgc cagagtctta aaagcgtatc ggtatttaaa agttcaagca
     1381 tgaagcaacc ttttttcaaa ctttagcaaa ataaaagaca aaggtaaaat aatgcataaa
     1441 tatcccataa acaacaaaaa caatagctca tctgtcttat aggttaagga atttaaactc
     1501 ttcattaaat tcaccaaatc tggcaaggca ataatactaa cgactgaagt ttctttgatt
     1561 aaaaatataa tattagcact aatacttggc atagaaatag ccaaagcttg cggcaaaatc
     1621 acataacgca aatttccaaa ttttgaaaaa cccaaagaaa gtcccgcttc aaactgctgt
     1681 tttcttatgg cttcaaatcc cgctcttaaa ctttcagcca tataagaacc tcctaaaaaa
     1741 ctaagtccta ctataacaca agcaaaagaa ggccttaaag tttcttctac gcttaagcaa
     1801 atcaaatcaa gcggtggaat ttgctctaaa tgtatattaa atttaggtaa agcataatat
     1861 aagaaaaaaa gttgaattaa taaaggcgta tttcttgaaa actctatata aagcttgcaa
     1921 atattttcta aaatttttat tttaaaataa ctcattaaaa tacaaaacaa acctattatc
     1981 aaagaaaaaa taattccaaa aaagcttagt tttatcgtaa gccaagcagc cgttaaaaaa
     2041 gcaggagctt gagctaatat aaaatcaaaa tccattctct accttaaatt ttaccaaagt
     2101 tctttcatga tcatatcttt atttaaaatt tcaattctac ctttttttgt atcaataagt
     2161 tctgaaattt taagttcttt taacactcga gataaagatt gtgctctaac atttaaatca
     2221 attgcaattt gtttttgtga aattgtatct aaattttttt cattttccaa
//
LOCUS       DAQSLY010000162         2245 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.163, whole genome shotgun sequence.
ACCESSION   DAQSLY010000162 DAQSLY010000000
VERSION     DAQSLY010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2245)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2245)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2245
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.163"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..185
                     /locus_tag="R2H98_001704"
     CDS             <1..185
                     /locus_tag="R2H98_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEE9024558.1"
                     /translation="LKQNFKKQLFTINGNEDDFIVIPRNVKLAESPSFGKPIILYDIK
                     SPGSVAYQNLAYSILG"
     gene            191..1027
                     /locus_tag="R2H98_001705"
     CDS             191..1027
                     /locus_tag="R2H98_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEE9024559.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KF"
     gene            1088..1513
                     /locus_tag="R2H98_001706"
     CDS             1088..1513
                     /locus_tag="R2H98_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEE9024560.1"
                     /translation="MFEDMHPSIMLATIAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLCVNDELEVIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAIQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            1524..2036
                     /locus_tag="R2H98_001707"
     CDS             1524..2036
                     /locus_tag="R2H98_001707"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEE9024561.1"
                     /translation="MSKLLFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVGILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            2039..>2245
                     /locus_tag="R2H98_001708"
     CDS             2039..>2245
                     /locus_tag="R2H98_001708"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEE9024562.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQN"
BASE COUNT          919 a          238 c          356 g          732 t
ORIGIN      
        1 atttgaaaca aaattttaaa aaacaacttt ttactattaa tggaaacgaa gatgacttta
       61 ttgtgatccc tcgcaatgta aaacttgcag aaagtccaag ttttggaaag cctataattc
      121 tttatgatat taaatcgcca ggttctgttg cttatcaaaa tttggcgtat tctatattag
      181 gataattata atggggttaa ataaagatag gggtttaagt agtttaatca gtgatatgga
      241 tactgtttat agcaaagaat tgggttttga taaaaatcaa agcactatga tagaaattga
      301 tcaaatttca cccaatccat ttcagccaag aaagaatttt gatcaagaag ctttagatga
      361 gcttgctaat tctatcaaag aatttggact tattcagcct attattgtat ttaaaaaaaa
      421 taataaattt attttaattg ctggggaacg tcgcttaaga gcagtgaaag cattaggaaa
      481 aaaagaaatt ctagctttta ttgctgatat tgatgagaat aaacttagag aattggctct
      541 tattgaaaat atacaaagag agaatttaaa ccctattgaa cttgctaatt cttataagga
      601 tttgatgcaa gttcataaga ttactcaaga gaatttagca gaacttattc ataagtctcg
      661 tactcaaata acaaatactt taagacttct gaatttagat attagaactc aagagttgat
      721 tgcttctgga aaaatttctc agggtcatgc taaagttttg gttggtttag atcaaaaaga
      781 tgaaaaaatg ttggttgata gcataatagg tcaaaaactt aatgttagag atactgaaaa
      841 aatagttaaa aaaataaaaa ataatgaaag cttacctaat caagaatttg aagatgaaat
      901 aaaaaaatta aaacaaatac taaatcgctt tggatttgac tgcaaaaata aaaataatga
      961 ttttgtaatt catttagaaa atattgataa aattaaaaaa ttaatcaaaa tgcttgaaaa
     1021 gttttaacca aaatcttagc ttttttatgg taaaatagtc cttcaaaaat tctaaccaag
     1081 gagaattatg tttgaagata tgcatccttc cataatgctt gctactatag ctattttttt
     1141 ggctatgata gttattttaa atagtatgct gtataagccg cttttaaaat ttatggatga
     1201 aagaaatgat tctataaaaa atgatgagaa taaagtaaaa gaaaattctc aagaagtttt
     1261 atgtgtgaat gatgaattag aagttattca tattaacact agagaagaaa ttcaaaaaat
     1321 caaacaaagt gctatagctg ctgctaaaga agaggcagag caaattctta gaagcaagaa
     1381 agaagaatta gaaagaaaaa tggccagctt ttatgcagat ttagctattc aaaaaaaaga
     1441 gttacaagaa catttaaaca tacatttacc tgagcttaag caagctttgc aaaataacat
     1501 aaagaaaatt taagaggaga gaaatgagta agttattatt tattatattt ttgctacctt
     1561 tgtatgcttt tggtgcatca aacggtagtg gagaatatga tattattcca aggactatta
     1621 attttctaat ttttgtgggt atattgtatt attttgttgc aactccattt aaaaattttt
     1681 acaaaaaccg tattgtaaaa atttcttcta aacttgatga aattcaaaaa aaacttttag
     1741 aaagtaaagc taagaaatta gatacgatga aaaaacttga agaagctaag gcaagtgctg
     1801 ctgccgcttt aattacagca aaaaaagaag ctgaaatttt agttcaaaat attaagaaag
     1861 agactcaaga tgagttagat ttacttcaaa aacattttga ggaacaaaaa gattatgaat
     1921 ttagaaaaat ggaaaaagaa ttagtatcaa atactttaaa tgaaattttt tctgatccaa
     1981 atatgacatt aaaacagagt gaaataatag aacttatgat gaagaaggta tcttaaatat
     2041 ggaaaatata attgcaagaa gatatgcaaa agcgatagct tcaagagctg atataaatga
     2101 tttttatcag aatttgtgta ttttaaattc tgcttttgtt ttgccaaaat ttaaaaatat
     2161 tatagaatct aatgagatta aaaaagaaag aaaaatggaa tttcttgatt ctttttttga
     2221 tattaaaaat tctagttttc aaaat
//
LOCUS       DAQSLY010000163         2193 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.164, whole genome shotgun sequence.
ACCESSION   DAQSLY010000163 DAQSLY010000000
VERSION     DAQSLY010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2193
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.164"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            34..1419
                     /locus_tag="R2H98_001709"
     CDS             34..1419
                     /locus_tag="R2H98_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024563.1"
                     /translation="MSNLIHIYDNHCDIFAKDRSVLDIKDIEEKYQIDFKSLDIKIFL
                     NSTLLTGSNELPNNPFYFGELDQDNTIKQDTPSYYFSPKDESSGKGRLSIFYKNDELC
                     LLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQKTTQVDKKQAIAKLHALLENQN
                     LECIHGGKVILKSNKGKTFKDDGVPIMLESDLLNSSIVACPNTIAGVSVPCTKVVNVK
                     GSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHSFDPKEGLGEQSKNQ
                     IELKEPIIRLHYKSDRFQKDNLPIYNLLINNEKKEQNKALNEFNIDLKDLKDIEDINI
                     LNQFKQDFSKDYEFKELNLSFDTNLIKLYFIIPKNIAKVYKSAYKEFENKDLGVGYFT
                     QLHEYDKIIKNALEDNKELNEYHFSFLAPAKMQNLKLQIAQGLDEILEDEDRKQELYV
                     CKFVVVNGVKI"
     gene            1416..>2193
                     /locus_tag="R2H98_001710"
     CDS             1416..>2193
                     /locus_tag="R2H98_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024564.1"
                     /translation="MKIKNFTLIASNHNLEIELKNLTKNANKIIFICSDFDGYKEAKN
                     SLYKTLHTIEDNFKIDNTKTFKIIHLNQANKDEITKEQKFSSDKNLSSIKKIIFNNLK
                     FLNNAINQNENKTLNKIIDENNVENIENFLKEIQKELNILLKNIKESNYFEQEIKPKI
                     QLTLDTLFNTLLKNITQSNDDEYKQIIRAIAKFFINILDSVTNLKKPVSLVKKNPYVF
                     VVNTLFEAYNSSAEYQEYKEQKYYYDFAYPLLELITSKLYP"
BASE COUNT          945 a          263 c          268 g          717 t
ORIGIN      
        1 caagataatt ctaacaatac ttctttcatc tctatgtcaa atttgatcca tatttatgat
       61 aatcattgtg atatttttgc aaaagataga agtgttttgg atataaagga catagaagaa
      121 aaatatcaaa tagattttaa aagtttagat ataaaaatct tcctaaactc caccctcctt
      181 acaggatcaa atgaacttcc taacaatcct ttttactttg gagaattaga tcaagataat
      241 actataaaac aagatacacc tagttattat ttttctccta aagatgaaag cagtggcaaa
      301 ggaagactta gtatctttta taaaaatgat gaactttgtt tgcttaatta ttctatatta
      361 gaaaattctt taaatatcaa attagaatgt ttaagcaaac aaagcttaga gtataaagac
      421 ttaatttcaa acactttaaa agaacaaaaa accacacaag tagataaaaa acaagctata
      481 gctaaacttc atgctctttt agaaaatcaa aacctagaat gtatccatgg aggtaaagtc
      541 atacttaaat caaacaaagg aaaaactttt aaagatgatg gtgtgcctat aatgctagaa
      601 agtgatttat taaactctag tatagtagct tgtcctaata ctatagcagg tgtaagtgtt
      661 ccttgtacta aagttgttaa tgtaaaagga tccttatctc aaaagaaagt caataatgaa
      721 tatgtaatct tacaagaact catctcagct tgtaaaacag ataaaggctt tgctttaaaa
      781 gtaagcttta ctcctactaa gtttaaattt gatcacagct ttgatcctaa agagggctta
      841 ggagaacaaa gtaaaaatca aatagagtta aaagagccta taataagact tcattataaa
      901 agtgatagat ttcaaaaaga taatttacct atctataatc ttttaatcaa taatgaaaaa
      961 aaagaacaaa ataaggcttt aaatgaattt aatatagatt taaaagattt aaaagatata
     1021 gaggatataa atattcttaa tcaattcaaa caagacttta gtaaagatta tgaatttaaa
     1081 gaactaaatc ttagctttga tactaattta atcaaacttt attttattat cccaaaaaac
     1141 attgctaaag tttataaaag tgcttataag gaatttgaaa ataaagattt aggagtaggg
     1201 tattttacac agctacatga gtatgataaa atcatcaaaa atgctttaga agataataaa
     1261 gaattaaacg aatatcattt tagtttttta gctcctgcaa aaatgcaaaa tttaaaactt
     1321 caaatcgcac aaggactaga tgaaatctta gaagatgaag atagaaaaca agagctttat
     1381 gtttgtaaat ttgtggtggt aaatggggtt aaaatatgaa aataaaaaat tttactttaa
     1441 ttgcatcaaa tcataattta gaaatcgagt taaaaaatct taccaaaaat gctaataaaa
     1501 ttatttttat atgcagtgat tttgatggat ataaagaagc taagaattct ttgtataaga
     1561 cactacatac tattgaagat aattttaaaa ttgataatac aaaaactttt aaaatcatac
     1621 atttaaatca agccaataaa gacgaaatca caaaagaaca aaaatttagc tctgataaaa
     1681 atttatctag cattaaaaaa attatcttta ataatttaaa atttttaaat aatgcaatta
     1741 atcaaaatga aaataaaacg ctcaataaaa ttattgatga aaacaatgta gaaaatattg
     1801 aaaatttttt aaaagaaatt caaaaagaat taaatatatt attaaaaaat atcaaagaat
     1861 ctaactattt tgagcaagaa attaaaccaa agatacaact taccctagat acacttttta
     1921 atacactttt aaaaaatatt actcaatcta atgatgatga atataagcaa attattagag
     1981 ctatagcaaa attttttatc aatatattag attctgtaac caatcttaaa aaacctgtct
     2041 ctttagtcaa aaaaaatcct tatgtttttg ttgtaaatac attatttgaa gcttataatt
     2101 cttctgctga gtatcaagag tataaggaac aaaaatatta ttatgatttt gcttatccac
     2161 ttttagagct tattactagt aagctttatc cta
//
LOCUS       DAQSLY010000164         2152 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.165, whole genome shotgun sequence.
ACCESSION   DAQSLY010000164 DAQSLY010000000
VERSION     DAQSLY010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.165"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..455)
                     /locus_tag="R2H98_001711"
     CDS             complement(<1..455)
                     /locus_tag="R2H98_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEE9024565.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFFLKFKKYTILQCNFCFTLENNL"
     gene            complement(448..1554)
                     /gene="rseP"
                     /locus_tag="R2H98_001712"
     CDS             complement(448..1554)
                     /gene="rseP"
                     /locus_tag="R2H98_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEE9024566.1"
                     /translation="MRSLLLLIVILTLGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(1551..2087)
                     /gene="pgsA"
                     /locus_tag="R2H98_001713"
     CDS             complement(1551..2087)
                     /gene="pgsA"
                     /locus_tag="R2H98_001713"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEE9024567.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALFLTLC
                     SGFEYIYTYIKAQKKGEK"
BASE COUNT          793 a          335 c          295 g          729 t
ORIGIN      
        1 agattgtttt ctaaagtaaa gcaaaaatta cattgtaaga ttgtgtattt tttaaatttt
       61 aaaaaaaaag cccaaaaacc ttcttcgcaa acattatagt tatatcctaa aaaaagctca
      121 aaatcttcat caaaagaaaa aattatttgt tcctcgggaa gaaatttaaa acaagcgagt
      181 cccttatcaa catcataaat aagtgtttta acacgttcat ttgctttaaa acttttatcg
      241 caaaatcttc ttgtagcatt gtaacaagca tagggtcttt gagagaaaaa gtcttttaaa
      301 tgtttatttt tttctttatt aagcgttttt tctagaagtc ttacttgagg aaaatataaa
      361 atttttcttg cttgaaaacg caaatagcgc caaaagatta tactttttct tctatcagta
      421 aaatttggaa tagggtagga aaatttttta ttcacctata atccttgata tatcattata
      481 agttgcaaag agcattaaac ttaaaagtat tgccatgcct gtatagctta aatattcaaa
      541 agtacgctgt ggaactttgc gtctaaaaat catttcataa agattaaaaa gtatatgtcc
      601 tccatcaagc ataggaatag gtaaaagatt taaaatgcct aaatttatag aaattaaagc
      661 agtgataaat aaaagcaaag taaagctatt ttgtgcagcc tttgaggtaa tttcagtcat
      721 ggtgataata ccgcctaaat tttttgcttc aacttcacca cttatgagtt ttacaatacc
      781 cttgatgatg agtgtagaag cttgaaaact ttcttgtgcg gcatatttaa aactttctaa
      841 accttggtgt tttacaagag tgcttgtccc atttggactg actccaagtt gaggtttttc
      901 aacgatttgt ccaaagtcat tgtatccttg tcctattttt ggagttaaaa taaattctaa
      961 attttttcct tctctattga ttagtatttt caaaggatct aaacttaaat gctttgaaat
     1021 ttcatcaaag gtttgaattc ttataccgtt aatttctaag atagtatcat ttttttgaag
     1081 tcctatttct tgtgcagcag agtttggcgc tatgtttcct atttgcggag caagtttgtt
     1141 tagacctaaa tttcctatga taatataaag aaaaaaagct aaaattagat taaaaaatgg
     1201 tccagcaaaa agaatataaa tcttttttaa aggacttaaa atgctatagc tatctttgtc
     1261 tagattttca aaaccaggac gcatatcatc ttgtccttta agtttaacat atcctccaag
     1321 tggtaaagtg cttaagcgat agtttgtgcc tttaaattca cgctctataa gactttttcc
     1381 aaatcctata ctaaaaactt caacttttac acccaaagat cttgcagcca aaaaatgtcc
     1441 taattcgtga aagaaaatta aaaatgagat gactaaaaca gttgctaaaa attcaataga
     1501 ataaaattta attcccaaag tcaaaataac aattaaaagc aataaagatc tcatttttct
     1561 cctttttttt gagcttttat ataagtatag atgtattcaa atccagaaca aagagttaaa
     1621 aacaaagcta tgtaaagtag aatttcaccg cctatccact ccatgattaa aaatcctatc
     1681 gcagtcattt gaaaagcggt tttaagcttg cctgcaaaag aagcattgac atttaaattt
     1741 tcactgatca ttacaactct aaaacccgtg ataaaaaatt cccttactag tataatataa
     1801 attacccatt cattagcttt tcctgtaagt aaaagcccta aaaaagctgc taaaacaagc
     1861 attttatcgg ctaatggatc taagattcca cccagttttg tagtttgttt ccaagttctt
     1921 gcgatgtatc catcaaaaaa atcacttaaa gctgctaatg aaaaagttaa agcagcaaaa
     1981 tagttaatcc aactttgatg aatattttca aaatgatgaa ttaataaaaa aaatagcaaa
     2041 ggcgctaaaa ccattctaaa aatcgccaag atattgggta aattcataac aagccttgtg
     2101 aaattaaatg taaaattata atcaaaattg tataaaattt aagcaaagac tt
//
LOCUS       DAQSLY010000165         2133 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.166, whole genome shotgun sequence.
ACCESSION   DAQSLY010000165 DAQSLY010000000
VERSION     DAQSLY010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.166"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            172..1050
                     /locus_tag="R2H98_001714"
     CDS             172..1050
                     /locus_tag="R2H98_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEE9024568.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIETNDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            1114..2028
                     /locus_tag="R2H98_001715"
     CDS             1114..2028
                     /locus_tag="R2H98_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEE9024569.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
BASE COUNT          799 a          321 c          315 g          698 t
ORIGIN      
        1 attttaatat caactcaaaa ataaacataa aagaaatttt caacaattct ataaaataaa
       61 atgatgtttc actacgctac aatcaatcac ttttttacca aattttaaaa caaaaaaata
      121 attcttgcta aaactttaag tataattaaa taaaaaagcg agattttcca aatgaaattt
      181 gttaatttta tacagggtca aaaacccaat ctaggagtac taaattctag tggaaaaatt
      241 gtaagttttg atgatcttgg cattgaaact aacgatatga atgaatttat tatccatttt
      301 gataaattta aacacaaact tacagacttg gattctaaaa tagcctatga aattcctcaa
      361 gaaaattatc tagcccctat tatagaacct cgtcaagata ttatatgtct tgggattaat
      421 tttttagatc atgccaaaga atctgccaaa tttaagggtg aaaaatttga agaaagagaa
      481 tatcctgtat attttggaaa acgctgcaat caagctacgc caccttttgg cgatatacct
      541 ttacatgcag atgtaacttc tcagcttgat tatgaatgtg agcttgcatt tattttaagt
      601 aaagatgctt ataaaatcaa agctaaagat gcaaaagatt atatctttgg ctatactatt
      661 atcaatgaaa tttcagctcg cgaacttcaa aaacgccaca aacaattcta ccgagcaaaa
      721 agtcttgaag gtagcactat aatgggacct tatatcacaa gcgtagatga aatttcttat
      781 cctcctaaac tccaacttca aagctatgtc aatgatgaac tacgccaaaa ctctaacact
      841 caattgttta tttttgatat tgcttatgtc ttagaagaac ttagtgcagg catgctttta
      901 aaagctggaa gtattatatc tatgggaact cctagtggag taggtatggg gttaaatcca
      961 cctacttttt taaaatcagg agataaagta cgctgtgtaa tagaaaattt aggagaactt
     1021 tgtaataaaa taaaaaatat caattattaa ataatttact aaaattatac tataatggca
     1081 ttttaaaaac ttaaattaag gcagaaattt atcatgaaaa aaataataat gattttatgt
     1141 ttatcttatg caaatatagt ctttgcagta gatatgataa cccctattcc aaattccatc
     1201 tcttatgata aagaaaaagc taaacttgga aaaagtcttt atatggataa aagtttatcc
     1261 aaagatggaa aagtttcgtg caatacttgc cataggcttg atcaacacgg tgttgatggg
     1321 cttgaatttt caataggagt tgataatcaa ctcgataaac cctttaacac tcctacaacc
     1381 tttaattctg tgtttaattt tgtgcaattt tggaatggca gagctaaaga tttaacagaa
     1441 caagctatgg gacctttttt caatccaaaa gaaatggggc taagtcctga acttctttta
     1501 caaaaagtta attcaaatga aaattatgta aaaactttta aaaaacttta tggagaagtt
     1561 acggtagaaa acatagctct tgcaatcgcc gaatttgaaa aaaccttgat cactccaaat
     1621 tctccttttg atcgctatct tagcggggat caaaatgcta tttcaactca agctaaaaaa
     1681 ggttacgaag attttaaagc taatggctgc atctcttgtc atcaaggtca aaatataggt
     1741 gggaatatgt ttcaaaaaat cggtattttt gaagaatacc caaaccaaga agatttaggg
     1801 cgctatgaaa tcacaaaaag agaagctgat aaaatggtat ttaaagttcc tagtcttaga
     1861 aatatagcca aaaccgcgcc ttattttcat gatggttcta tacctacttt agatgcttgt
     1921 gttcagttta tggcttacta tcaactagga aaatttttag atcaagaaac agttgacaat
     1981 atagttgcat tcttagaaag cttaacagga gaatatcatg acaaataaaa aaagttcatt
     2041 tttgataaaa tttattatct tatctatact agttttgact ttcattcttg ttttattggc
     2101 tattattttt aataactatt cttcatctaa aaa
//
LOCUS       DAQSLY010000166         2076 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.167, whole genome shotgun sequence.
ACCESSION   DAQSLY010000166 DAQSLY010000000
VERSION     DAQSLY010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.167"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(48..728)
                     /locus_tag="R2H98_001716"
     CDS             complement(48..728)
                     /locus_tag="R2H98_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEE9024570.1"
                     /translation="MGRSGKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNTALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(692..1303)
                     /locus_tag="R2H98_001717"
     CDS             complement(692..1303)
                     /locus_tag="R2H98_001717"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEE9024571.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLTAKHRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGILEKI
                     QKDENGVDFHITLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(1312..>2076)
                     /locus_tag="R2H98_001718"
     CDS             complement(1312..>2076)
                     /locus_tag="R2H98_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024572.1"
                     /translation="LQGSFDISKMLLNSDFNLKINDFSKLGFLLDRKLKGKAEFNGKV
                     GFDKSLNFVVNSPNLFEGKLQSTFKDNLLLADLNGVDLSSLAQGLDFMDIYQGKADMK
                     ANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITDDVYRTANAKALIKKENIK
                     LDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGTTENPKVNLNAGS
                     VLNSIKNVVGGGVSDGAKNTGNKVDKAVNKLLNKIF"
BASE COUNT          700 a          388 c          212 g          776 t
ORIGIN      
        1 ctttttgaat gatttttaac actcttaaat cttttctttc atacatttta atcctttaaa
       61 taaaccacgc tcacaaaacg cttaggcgtt ttatcgcgac gataagaaaa aaaactctca
      121 tcatcaaaac tacaaattcc acaatcttta atattttcaa tgcctaaatt ttgagcttga
      181 aattttacca aggcttttaa atcaagttta ttatcttgaa caaattcttt aaattctttt
      241 ttagcaaatt ctaaaatttc tccatctatt tcataatttt tagcacaaat tccaggtaaa
      301 ataaaaagat gaaatttatt cttatctaaa tgtgaatttt gcatagtaat ttgatcaacg
      361 cattctttta ggatattttc aaagcttcct tttctacctg aatgcaaagc tgctataatg
      421 ccactttcat gatataagat caaaggcaga caatccgcac ttaagacaca aagagcagta
      481 tttttttctt tacttataag tccatcacaa ctgagatttt ttaaattttc atcataaatg
      541 ataactttat gagagtgaat ttgatccata aaaacacatt tttcaatatc tttaaaacct
      601 aaatgagaaa ataaattctc attatgaatt ttagccctaa aaacattata atccttatca
      661 aaagcacaaa aaataccgac tttatcattt tctaataaag ataagaaatt ctttccactt
      721 cttcccatga taatcctttg tttttacctt gtaattgtgc ataaatataa cgagcaagca
      781 aatcgctttc tatatttatt tttctaccta cttgatagtc cttaaaaagc gtttctttaa
      841 aagtaatagg aataatagta agcctaatac cattttttaa aatttcattg atagtaaggc
      901 ttaccccatc aacagctata cttccttttt ctgccataaa tttcatagct tctttaggta
      961 aagttatatg aaaatccact ccattttcat ccttttgaat cttttcaagt ataccaataa
     1021 aatcaatatg cccttgcata agatgtccat cgattctatc gccatatctt aaagcaggtt
     1081 ctatatgaac tttatctttt aaattctcta tagctatatg agtgcgactt tcgcgagaaa
     1141 gttccacttc aaaacctccc tcataaagtt ttgtcacact caaacaagct ccatttacag
     1201 ctatactatc gccaagattt ggacgatgct tagctgttaa acttaaagta ttgttttgat
     1261 aagattgaac tttggcaatt tctcttatga gtccattaaa cattttttac cttagaaaat
     1321 cttatttaat aatttattta ccgctttatc cactttattg cctgtatttt tagcaccatc
     1381 actcacgccg ccacctacta catttttaat agaatttaaa acacttcctg catttaaatt
     1441 tactttagga ttttctgtag ttcctgtaat acttccttta aaattagctc tatcgagttt
     1501 aatatcaaaa ggcaaattta aagctccact tttagaattt aaagctcctg attgtactaa
     1561 aatataagaa cgatctgctt gcatattaag atcaagcttg atattttctt ttttaatcaa
     1621 agctttagca ttagcagtac gataaacatc atctgtaata tcttttaatg ttaaaatttt
     1681 taaagcattg gtaataagat ttggttttaa tttaccctct ttcatatcca aattaacctc
     1741 gccttcttcg cttaaaagat tgtaatttgc cttcatgtcc gccttacctt gataaatatc
     1801 cataaaatcc aaaccctgag ctagactact taaatccact ccgtttaaat cagcaagtaa
     1861 aaggttatct ttaaatgtgc tttgaagttt tccttcaaat aaatttggac tatttacaac
     1921 aaaatttaaa ctcttatcaa aacctacctt tccattaaat tctgccttac ctttaagttt
     1981 tctatctaac aaaaagccta gttttgaaaa atcatttatc tttaaattaa aatccgaatt
     2041 taaaagcatc ttacttatat caaaacttcc ttgtag
//
LOCUS       DAQSLY010000167         2021 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.168, whole genome shotgun sequence.
ACCESSION   DAQSLY010000167 DAQSLY010000000
VERSION     DAQSLY010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.168"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            63..290
                     /locus_tag="R2H98_001719"
     CDS             63..290
                     /locus_tag="R2H98_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HEE9024573.1"
                     /translation="MNNVLLHRITEKGNIRYYSIEIITTLFEEYMVERVYGNVRFKSC
                     TGRKNNVFPSFNEAQIFFEKLKKQKMKKGYA"
     gene            complement(606..749)
                     /locus_tag="R2H98_001720"
     CDS             complement(606..749)
                     /locus_tag="R2H98_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024574.1"
                     /translation="MCKDQEYIEQRKVLWEKSFEAFKDDKVYQKEQLELAEAGINDGL
                     EED"
     gene            complement(949..1236)
                     /locus_tag="R2H98_001721"
     CDS             complement(949..1236)
                     /locus_tag="R2H98_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system death-on-curing
                     family toxin"
                     /protein_id="HEE9024575.1"
                     /translation="MKYIELSEAIAIHEKIIEKTGGLSGYNETQIGYLASALEHIKND
                     DYYPTITDKITHLIFSCVKFHPFADGNKRTSIFLGMHFLDLDKILPKNMNS"
     gene            complement(1233..1382)
                     /locus_tag="R2H98_001722"
     CDS             complement(1233..1382)
                     /locus_tag="R2H98_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024576.1"
                     /translation="MKTTEYNTQQKNNKEYLAEREAVKKTMAKMEKELEKPAINAVFQ
                     RLKNK"
     gene            1654..1881
                     /locus_tag="R2H98_001723"
     CDS             1654..1881
                     /locus_tag="R2H98_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024577.1"
                     /translation="MTLIIENVNEDFLPAFKGLAKSINAKCKISKPKLSSFESKILNA
                     SKELDKEKKVNTALSFNSHQDFVKAYQNGKI"
     gene            1868..>2021
                     /locus_tag="R2H98_001724"
     CDS             1868..>2021
                     /locus_tag="R2H98_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HEE9024578.1"
                     /translation="MAKYKIYYHKDFIKTYKKISDEERKITDEVIVKLSNDENLEPKY
                     KDHQLKR"
BASE COUNT          766 a          267 c          234 g          754 t
ORIGIN      
        1 atagaaaaaa tgtttaaaaa tgattttttg aataaaataa ataattttta attaggtttt
       61 ttatgaataa tgttttgttg cacagaataa ctgagaaagg aaacattcgc tattatagca
      121 tagaaattat taccactcta tttgaggaat atatggttga gagagtttac ggaaatgtgc
      181 gttttaaaag ttgcacagga agaaaaaata atgtatttcc aagttttaat gaggcacaaa
      241 ttttttttga gaagttaaag aaacaaaaaa tgaaaaaagg gtatgcgtaa gtttttgctc
      301 aaaaaataag aaaaaacatt gataaaatag gcttttgaga taagctttta gctaaactct
      361 caaaaacagg taaaaaatcc ttatcaaatc cgctaatttc aatttttata gccatttgta
      421 tcctttctta tataattttt atttttatta taccataaag gattttgttg taaaattgga
      481 aaaaactttt tttatatata aaattacata aataagacaa tcaaaataca atacaaaaga
      541 ttaaagaata tagtaaaaac ggttttttaa aaaaactaat ataaaatata tggctaatta
      601 tataattaat cctcctctaa gccatcatta attcctgctt ctgcaagttc aagctgttct
      661 ttttgataca ctttatcatc tttaaaggct tcaaaacttt tttcccataa aacctttctt
      721 tgctctatat attcttgatc tttacacata ttaatccttt ttatttatca ggtttaaaac
      781 cactatctaa aattattttt gtcattgcac ctttaagttt atcaaaacga tttaaagctt
      841 gcatattact aactctaagc aatcttattt tatcatcttt tttataaaac actttaaaaa
      901 cttcatcact ttgtttgtgt tttactatat catctaaagt aggactacct atgaattcat
      961 attctttggt aaaatcttat ctaaatctaa aaagtgcata cctagaaata tcgaagtccg
     1021 tttatttcca tcagcaaatg gatgaaattt tacacaggaa aatattaaat gtgtaatttt
     1081 atcagttatt gtaggataat aatcatcgtt ttttatatgc tctaatgcac tagccaaata
     1141 tcctatttgt gtttcattat aaccacttaa tccacctgtt ttttcaataa tcttttcgtg
     1201 tatagcaata gcttcgctta gttctatata tttcatttat ttttaagtct ttgaaacacc
     1261 gcatttatag caggtttttc taactctttt tccatttttg ccatagtttt tttaactgct
     1321 tctctctcag ctaaatattc tttattattt ttttgttgcg tattatattc tgtggttttc
     1381 attttactac cctctttatt ctttcaatta atatcctaaa tactgtatag actattttaa
     1441 catttatatt tgattagcaa atcaatatga agctaaaaaa aattaatttg ctaattatac
     1501 ccaaattaat tttcattaag caataaataa aacaatcaag tcaaaaaaat ccgtttcaaa
     1561 ccactaaaaa ataggcattt tatagcaaaa atacttgcaa aaattattaa aaatggtata
     1621 attatgttat ataaattgag aaaggagttg cttatgactc ttattattga aaatgttaat
     1681 gaagattttt tacctgcatt caagggttta gcaaaaagca taaatgccaa atgtaaaatt
     1741 tctaagccta agttgagtag ttttgaaagt aagatattaa atgcaagcaa agaacttgat
     1801 aaagaaaaaa aagtcaatac tgcattaagc tttaattcgc atcaagactt tgtgaaagct
     1861 tatcaaaatg gcaaaatata aaatttatta ccataaagat tttataaaaa cttacaaaaa
     1921 aataagcgat gaagagcgta aaataactga tgaagttatt gtaaaacttt ctaatgatga
     1981 gaatttagaa cctaaatata aagatcatca attaaaaagg t
//
LOCUS       DAQSLY010000168         1998 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.169, whole genome shotgun sequence.
ACCESSION   DAQSLY010000168 DAQSLY010000000
VERSION     DAQSLY010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.169"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            127..1443
                     /locus_tag="R2H98_001725"
     CDS             127..1443
                     /locus_tag="R2H98_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEE9024579.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFLCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFTILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVVASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1419..>1998
                     /locus_tag="R2H98_001726"
     CDS             1419..>1998
                     /locus_tag="R2H98_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEE9024580.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKRIKTLRLRLNERGEFVLSIPY
                     FCTFKNVYEFLDKSSSWMNEAKKRFEKKALKDDELIFLAKKYQIIFDENAKKIYFDKD
                     KILCQNKAKLDLFLRQNAKKIFTFYLKKWSKKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     INLNLKLIQKSLRAIEYVILHEISHLKFPNHSK"
BASE COUNT          664 a          223 c          357 g          754 t
ORIGIN      
        1 aagaaaatca tcaaattatt ttaaatataa caaattgagt atattaaatg tttatattta
       61 aaaaagtaat ttttaagtag aattgttttt taaaaaaata tttaaaaaaa gagataagat
      121 aatatcatgg caaaaaaaca actctcctta acaagactca gttttcctat attttgggat
      181 ttgctttcta agtatttaac cgtgattatc aataccgcta tggtgtcgca ttattctaat
      241 tttcttgttg gtgctatggg cgctggaaat caaattttag atctttttat cactattttt
      301 tcatttttaa gtgtgggttg tagtgtggtg atcgcacaag caattggtgc aaaagatcat
      361 gttttagcaa gaaaagtgat tcatcaaagt ttgttcttaa atgcactttt aggcttttta
      421 tgcggtgtgc ttattttatg gcatggggag tatttgcttt atcttttaaa aattccacaa
      481 gaattgctca aagatagcga aatttactta catatgcttg caatttgttt gttttttgat
      541 gccataggta ttgttttagc tgctattgta agggtttata atatggctta ttgggtcatg
      601 tttataggtt ttttgatgga tatagtggtg atttgtggaa attattatgt tttgcattat
      661 acaaagtcag aactttttgg aatagggctt agtaatattt ttgctcgcat tgttgctata
      721 gttgctttgt ttacgatact tttttataaa cttaaaattc atcttaaaat caaagaaatg
      781 ataaaacttg aaaaagaagt tttaaaaaag gttttaaata taggaggatt ttcagcaggg
      841 gaaaatcttt tgtggatagt ccaatatact atagcttttg cttttgtagc aagcttaggt
      901 gaggcgagtt tgagtgtgca aacgatttat tttcaaattt caatgcttat catgcttata
      961 ggacaagcta cgagcatagc taatgaaatc atagtgggta aattagtcgg tgctagatat
     1021 gaaaatatag cttataaaca cgcttggcgt gctttgtatt ttagcgtggt agcgagtgct
     1081 ttagtggcgt ttttaaacta tctttgtcaa gattttacta tgcaaatttt agggcttaaa
     1141 gaagagctaa aaaatttaat gataccttta tttgctcttt caatctttct tgaaatttca
     1201 cgaactttta atatagttat ggttaattcc ttgcgcgcaa gtggcgatgc taagtttcca
     1261 ttttttagcg gacttgtttt tatgatgggg gtatctttgc ctgtgggtta tgtgctttgt
     1321 tttcatttta atcttggaat tttaggggtt tggataggat tttgtgcgga tgaattttta
     1381 cgtggaatgg taaattcata cagatggaaa agcaaaaaat ggcaaggcaa agctctagtt
     1441 taaaatcatt tatttataaa gatgagtgct atttttattc taaaaaacgc ataaaaactt
     1501 taagattaag gctcaatgaa aggggtgaat ttgttcttag tattccttat ttttgcacct
     1561 ttaaaaacgt ttatgagttt ttagataaat caagttcttg gatgaatgag gcaaaaaaaa
     1621 gatttgaaaa aaaagcctta aaagatgatg agttaatctt tttagctaaa aaatatcaaa
     1681 tcatttttga tgaaaatgcc aaaaaaattt attttgataa agataaaatt ctttgtcaaa
     1741 ataaagcaaa attggattta tttttaagac aaaatgctaa aaagattttt actttttatc
     1801 ttaaaaaatg gagtaaaaaa acaggcttat tttacacgca tttaagcatt aaaaatatga
     1861 aaacacgttg gggttcttgc aatcacaata aagcttatat taatttaaat ttaaaactca
     1921 ttcaaaagag tttaagagct attgaatatg tgattttgca tgaaattagc catttaaaat
     1981 ttcccaatca tagcaaag
//
LOCUS       DAQSLY010000169         1960 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.170, whole genome shotgun sequence.
ACCESSION   DAQSLY010000169 DAQSLY010000000
VERSION     DAQSLY010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.170"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..465)
                     /locus_tag="R2H98_001727"
     CDS             complement(<1..465)
                     /locus_tag="R2H98_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEE9024581.1"
                     /translation="MQAIILCGGLGTRLKSIIKDIPKPMAPINNKPFLEFIFEYLKKQ
                     GVKEITLAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKFIKNEVYVL
                     NGDTFFEIDLSKLKLNESKICLALKQMSNFDRYGTVNVNEQGFVISFEEKIFK"
     gene            complement(453..1058)
                     /gene="gmhA2"
                     /locus_tag="R2H98_001728"
     CDS             complement(453..1058)
                     /gene="gmhA2"
                     /locus_tag="R2H98_001728"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEE9024582.1"
                     /translation="MEVINSYIKGHFQESILVKEQILKDEHLITLIKNTSLEVIKAYK
                     KGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSVLTAIGNDYGYEN
                     LFARQVQAQGTKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            complement(1064..>1960)
                     /locus_tag="R2H98_001729"
     CDS             complement(1064..>1960)
                     /locus_tag="R2H98_001729"
                     /inference="COORDINATES: protein
                     motif:HMM:NF020073.1,HMM:NF024880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEE9024583.1"
                     /translation="TDIFLEIAPGRGDLALALSREVSFIYTIDPSKSSSNYDKTENMK
                     HIQGFFSKKFLDEQVDNKINFIVFRHLLEHIDNPKNFLKDIVEYLDENGMIYLEVPNA
                     HDILRYKRFIDIYHDHCGYYQEATLVNIMNHLGCKLIEKVKYFDEQHIGLFFLKKQIR
                     KYQEPFVFYNNIKDSFDIEIKYINDVLSRYKNIGIYGAGVQGHTLINHLNYKNLLKIV
                     CAFEINRDKVGKYMVNSNILINYPDRKSLEKLDCLIMAIPSHEVYAYENEILDFIRKK
                     YFQGDVIRTAKGIECFKFSKGK"
BASE COUNT          654 a          347 c          198 g          761 t
ORIGIN      
        1 tttaaatatt ttttcttcaa aggaaatcac aaaaccttgc tcattaacat ttactgtgcc
       61 gtatctatca aaattactca tttgctttaa agcgaggcaa attttacttt catttagttt
      121 taatttactt aaatctattt caaaaaaagt atcgccattt aaaacataaa cttcattttt
      181 tataaatttt aaagcctctt ttatagctcc gcctgtacca agtggctctt tttcgatgct
      241 gtattttatt tttataccta aaaactcatc tttaaaatat tcttttatca cttcatattt
      301 gtatgatact gctaaggtaa tttcttttac gccttgtttt ttaagatact caaaaataaa
      361 ttctaaaaaa ggcttattat ttatgggtgc cataggcttt ggaatgtctt ttataatact
      421 tttaagtctt gttcctaaac caccgcaaag tattattgct tgcaagaaaa acctttacca
      481 aaaagctctt cttcaacgat agcacaaata atatgcccta ttaaaatatg cgcttcttga
      541 attcttggtg tgcaagttga aggcactttt atacaataat cacaaagttc attcatagcc
      601 ccgccactag ccccgcttaa gcctatactt atgatttctt tttgcttgca aagttctaaa
      661 gcttttagga tatttttact atttccactt gttgaaatac ctataaaaac atctccctta
      721 gtaccttgag cttgtacttg tcttgcaaat aaattttcat aaccataatc attcccaata
      781 gccgttaaca cgctagtatc tgtagtaagt gcaatacttg caataccagg tctatcaaaa
      841 taaaacctac ttacaaattc tcctgcgata tgctgtgcat cagccgcact accgccgttt
      901 cctgctaata aagttttgtt acccttttta taagctttta tgacttctaa tgaagtattt
      961 ttaataagag ttattaaatg ctcatctttt aaaatttgct cttttactaa aattgattct
     1021 tgaaaatgtc cttttatata tgaatttata acttccatga tttttattta ccctttgaaa
     1081 atttgaaaca ttcgatccct tttgcagttc ttataacatc tccttgaaaa tatttcttcc
     1141 ttataaaatc tagaatttca ttttcatatg catatacttc atgggatggt atagccataa
     1201 ttaaacaatc caatttttct aaacttttcc gatctggata gtttattaaa atatttgaat
     1261 taaccatata tttaccaact ttatctctat taatttcgaa agcacaaaca attttcaata
     1321 aatttttata attcaaatga ttaattaatg tatgtccttg cacaccagcg ccataaatac
     1381 ctatattctt ataccgagat aaaacatcat ttatatattt tatttcaata tcaaaactat
     1441 cttttatgtt attatagaaa acaaatggtt cttgatattt cctaatttgt ttttttaaaa
     1501 aaaataaacc tatgtgttgc tcatcaaaat atttcacttt ttcaataagt ttacacccta
     1561 aatgattcat aatatttact aaagtagcct cttgataata accacaatga tcatgataaa
     1621 tatcaataaa tcttttatat cttaaaatat catgtgcatt cggaacctcc aagtaaatca
     1681 taccattttc atctaaatac tctacaatat cttttaaaaa atttttaggg ttatcaatgt
     1741 gttctaataa atgtctaaat actataaaat taattttatt atcaacctgc tcatctaaaa
     1801 atttcttact aaaaaatcct tgtatatgtt tcatattttc cgttttgtca taatttgaac
     1861 ttgatttaga aggatctata gtataaataa aactaacttc tctagataat gctaaagcaa
     1921 gatcacctct gcctggtgca atttccaaaa aaatatcagt
//
LOCUS       DAQSLY010000170         1899 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.171, whole genome shotgun sequence.
ACCESSION   DAQSLY010000170 DAQSLY010000000
VERSION     DAQSLY010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1899)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1899)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.171"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..588)
                     /locus_tag="R2H98_001730"
     CDS             complement(<1..588)
                     /locus_tag="R2H98_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEE9024584.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVS"
     gene            complement(585..1640)
                     /locus_tag="R2H98_001731"
     CDS             complement(585..1640)
                     /locus_tag="R2H98_001731"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEE9024585.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(1686..>1899)
                     /locus_tag="R2H98_001732"
     CDS             complement(1686..>1899)
                     /locus_tag="R2H98_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="potassium transporter TrkA"
                     /protein_id="HEE9024586.1"
                     /translation="LSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDF
                     ARNLSTNLNRHYYKMRQNYQLFIPVE"
BASE COUNT          655 a          314 c          192 g          738 t
ORIGIN      
        1 agaaacacta gcaaaattta aagcttgctc aaattcttcc agctttttat ccgaagcttt
       61 taaagcttct atattctcaa cacttggttt aagctcaact aattccttaa gttctgagtt
      121 tttttccctg attttatcta ctaaattttt aaaatcatta aatttaaata tatactcttc
      181 cttttctcct tttaatttct taatatgaga aaaagctcct ataatagcca aaggattagt
      241 aagcttagat aaagtttcta tattatcagg ggcactaaga ctttgtgcaa aatttaaatc
      301 tttatattct ttaagcaagt tcaattgctc ttctaaattt gctatcttgc gtttaagttc
      361 ttcttgttgg tgaatatcgg aagtcttttt taaattaaga tttaaaatga ttaattcatc
      421 atttatatct tgatatttta taaaattttc ataacgtata ttccaaatac tagcactgat
      481 tacagtattt aaagtattaa ttttctcatt tatattatta ataatagtcc gatttacatc
      541 accaaaagca aaaacaacaa aaaaggttaa aataataatt tttttcattg gaattctctt
      601 aaagttgcaa ttatatcttc tttagaaata tcacctttta tcaaaccctt acccaaagga
      661 ctagcaagaa caaaattgat ttttttatta gagctttttt tatccatgaa aaaagcttca
      721 taaaattcat ctacattgtt gattttatat gatattggca aaccgaattt aagtaaaata
      781 tcttttattc tttgactttg cattttatcc aaaagcccta aatttaaagc caattgattt
      841 gccataacca tacctatagc caccgcttct ccgtgtaaat aaagcttata atctgtaaaa
      901 ttttctataa catgagcaaa agtatgacca taatttaaaa gcattctaag ccttgattct
      961 ttttcatctt gttcaacaac ccttgattta agctctatgc tttttgctat aatctgagta
     1021 aaaatttcat tctcacaagt agcatttaag aaactttttt catcaatttt ttctataaaa
     1081 tcaagtatac tataatcaaa cattgctgcc attttaataa attcagccat gcctgcagca
     1141 agttctctag agctcaaagt ctttaaaaaa aaactctcac aatatacagc tttaggttga
     1201 taaaaagtgc caataagatt tttaccaaaa ttattattaa cacctgtttt tccacctact
     1261 gctgcatcaa cacaagctaa aagtgtagta ggaatattta taaaatcaat acctctttga
     1321 taaatactag cagcaaatcc gcccatatca ctaatcacgc caccaccaaa acttataagt
     1381 acgctttttc tatccaattt agaattaaac atttggttta aaatttcttc catggtgctt
     1441 aaatttttat attcttcacc atctttcaca gtagcaataa aaatttcttt tgccttaatt
     1501 ttagaaagta atgttttcaa atgaagacct gaaatcttag gatttgaaag tataaaaacc
     1561 ttactatcaa attctaattc ttcaagttca tcaatataaa ccttataagc attttctttt
     1621 aacttaactt ctacttgcat tgaactactc tttttgcatt tattttatca catttaatta
     1681 attatttatt ctactggtat gaaaagttgg taattttgtc tcattttgta ataatgccta
     1741 tttaaatttg tacttaaatt tctggcaaaa tctctattta gtaattcttt ttgaaaactc
     1801 acaaattgta acaaatcttc gcgatattgc aaatttaaaa gagggttttc atcattttta
     1861 ttaataattt gtatattttt atcataaagc ttagataaa
//
LOCUS       DAQSLY010000171         1861 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.172, whole genome shotgun sequence.
ACCESSION   DAQSLY010000171 DAQSLY010000000
VERSION     DAQSLY010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1861
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.172"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..961
                     /locus_tag="R2H98_001733"
     CDS             <1..961
                     /locus_tag="R2H98_001733"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEE9024587.1"
                     /translation="TMPQYNYPRYKREIATNALSYLSVVPAMIDKGLDTLKLQENTDY
                     ELSSINNHYLTLANSTVGVDNTNARARNEITLKNDKDKEEIYILAQKDYKEEIGNNYE
                     QTIKNNKTSEVGALYTEFITLGHMQNIIGFKNVNVGAEYLENTLLSKDTNVGLSNTLN
                     VGISNEVNIGQNHEEKIGNDKRVIINNNLEQDIKNDFIQRIGHNKNETIKGSYVLQTN
                     QSIKFHSKKDLSIETNEYFKAEADDSISFKAKNNCSFTADEINTLANKESTLIAQEQI
                     ISQVGENTTITQTKDKIILQVGTTQVIIDSKGLRVKGGDLRAD"
     gene            1015..>1861
                     /locus_tag="R2H98_001734"
     CDS             1015..>1861
                     /locus_tag="R2H98_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEE9024588.1"
                     /translation="MKTLEDIKAMSFEEKMQIQKQLFDFISNNDLENVKNLLKDYPIK
                     ESFYEAHFTYHHNNEDYELSLFDPAASLLRAAFACEENNNDFSILDYLFDEYGLSLKD
                     PKYNFAFPDMKHIKEANEKYILMKKVEGNSIIYKKALIYAYILGTKNPNSQIIQYLVN
                     RGAKFEVHEDDFGWTPMHFWARRNNYELLELAIKGGANVDMQTFSKLRKYSKTLLFEA
                     VSEPETYKVTKLLIELGANVNFATPRTPLDDAKGSRNKKLLKDAGAMTSNEIRKKYNL
                     PAYDDS"
BASE COUNT          798 a          248 c          288 g          527 t
ORIGIN      
        1 aacaatgccc caatataatt atccaagata taaaagagaa atcgctacaa atgcattgag
       61 ttatttaagc gtagttcctg ctatgattga taaaggttta gatacattaa aacttcaaga
      121 aaatactgat tatgaattaa gctctataaa caatcattat cttactttgg ctaattccac
      181 agtaggagtg gataacacca atgcaagagc aaggaatgaa attaccctaa aaaacgacaa
      241 agacaaagaa gaaatttata tcctagcaca aaaagattat aaagaagaaa taggtaataa
      301 ttatgagcaa accataaaaa ataataaaac ttcagaagtg ggagccttat ataccgaatt
      361 tattacttta ggacatatgc aaaatatcat aggttttaaa aatgtcaatg taggagctga
      421 atatttagaa aataccctac tttctaaaga tactaatgtg ggcttaagta atactttaaa
      481 tgtaggaatc agcaatgaag tcaatatcgg acaaaaccac gaagaaaaga taggaaacga
      541 taaaagagta ataatcaata acaatctaga gcaagatatc aaaaatgatt ttatccaaag
      601 aataggacat aataaaaatg aaaccataaa aggttcttat gtgcttcaaa ccaatcaaag
      661 tataaaattt cactccaaaa aagatctaag catagaaaca aatgagtatt tcaaagctga
      721 agctgatgat tctattagtt ttaaagctaa aaataattgt tcctttacgg ctgatgaaat
      781 aaatacttta gctaataaag aaagtacttt aatagcacaa gaacaaatca tctctcaagt
      841 aggtgaaaat accaccatca cacaaacaaa agataagatt atactccaag taggaacaac
      901 acaagtgatt atagatagca aaggtttaag ggtaaaagga ggtgatttaa gagcggatta
      961 aaagcaattt tcttgaatta aaactaaaat tacaaaaaaa ctaaaggaaa aacaatgaaa
     1021 acattagaag atatcaaagc tatgagtttt gaagaaaaaa tgcaaattca aaaacagtta
     1081 tttgatttta ttagtaataa tgacttggaa aatgttaaaa atcttttaaa agattatccc
     1141 ataaaagaaa gcttttatga ggcgcatttt acataccatc ataataatga agattatgag
     1201 ctatctttat ttgatccagc agcaagctta ttaagggccg catttgcttg tgaagaaaat
     1261 aataatgatt tttctatttt agattattta tttgatgagt atggtttaag tttaaaagat
     1321 cctaaatata attttgcttt tcccgacatg aaacatatca aagaagctaa tgaaaaatat
     1381 attttaatga aaaaagtaga aggaaatagc attatttata aaaaagctct aatctacgca
     1441 tatatactag gcactaaaaa cccaaattct caaatcatac aatatctagt caatcgtgga
     1501 gctaaatttg aagtgcatga agatgacttt ggttggactc ctatgcattt ttgggctaga
     1561 cgcaataatt atgaattatt agaactagct attaaaggag gagctaatgt agatatgcaa
     1621 acttttagta aattaagaaa atacagcaaa actcttttat ttgaagctgt aagcgaacct
     1681 gaaacttata aggttacaaa gcttttaatc gaactaggag ctaatgtgaa ttttgctacc
     1741 ccaagaactc ctttagatga tgcaaaagga tctagaaata aaaagctttt aaaagatgca
     1801 ggagcaatga cttcaaatga aattagaaaa aaatataatt taccagcata tgatgattct
     1861 c
//
LOCUS       DAQSLY010000172         1855 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.173, whole genome shotgun sequence.
ACCESSION   DAQSLY010000172 DAQSLY010000000
VERSION     DAQSLY010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.173"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..843)
                     /locus_tag="R2H98_001735"
     CDS             complement(<1..843)
                     /locus_tag="R2H98_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEE9024589.1"
                     /translation="MFKKIFDFVKSRLFITAFLLCCIFLLSILFWFWGSLVAFNDIYI
                     FSSSFLRFSIILIIWLIVFLFFLLKPIINFISSLKSEKRLKFKVLKKEADEFIYKSKR
                     NFFLSLKDAKETWKNDLKTKNLPLIIIIGNEGAGKSTFINYSDIEYPLSDSLESYKKF
                     HKSTRNFALYVSKKGALLDTEGNYFSQEEFFKPASSDEIPEDDIDKNRDFLIKKNIWK
                     KFLTFLNKNFFHSKLNGIILVVDTIIFLNNPKEYSKNLIRYLTKRVNECEKTLNLKLP
                     IYIVF"
     gene            961..1476
                     /locus_tag="R2H98_001736"
     CDS             961..1476
                     /locus_tag="R2H98_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001142947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hcp family type VI secretion system effector"
                     /protein_id="HEE9024590.1"
                     /translation="MAEPAFIKIEGSTQGLISSGASTEASIGNRYKSGHEDEIMAQEI
                     SHIVTVPVDQQSGQPSGQRVHKPFSFTCSLNKSVPLLYNALTKGERLPTVEVHWFRTA
                     TSGGSEHFFTTKLEDAIITNIELIMPNAQESSNHDKTELLKVSMSYRKVVWEHTAAGT
                     SGSDDWREGKA"
BASE COUNT          698 a          242 c          241 g          674 t
ORIGIN      
        1 aaaaactata taaataggca gttttaaatt taaagttttt tcacattcat ttactctttt
       61 tgttagatat ctaataagat ttttggaata ctccttagga ttatttaaga aaattatagt
      121 gtcaacaact aaaataattc catttagttt gctatgaaaa aaatttttat tgagaaaagt
      181 aaggaatttt ttccatatat tttttttaat taaaaaatct ctatttttat ctatatcatc
      241 ttcgggtatt tcatcgctac ttgcaggctt aaaaaattct tcttgtgaaa aatagtttcc
      301 ttctgtatct aacaaagcac ctttttttga tacataaagt gcaaaatttc tagtagactt
      361 atggaatttt ttataagact ctaaactatc actaagtggg tattcgatgt cagaataatt
      421 aataaaagtg ctttttccag ctccttcatt tcctatgatg ataattaagg gtaaattttt
      481 tgtttttaaa tcattcttcc atgtttcttt ggcatcttta agagataaaa agaagtttct
      541 tttagatttg taaatgaact catcagcttc tttttttagg actttaaatt ttaatctttt
      601 ttcacttttt aaagaagata taaaatttat aataggcttt aataaaaaaa acaaaaaaac
      661 gataagccaa attatcaaaa taatactaaa tcttaaaaat gaactactaa aaatatatat
      721 gtcattaaaa gctactaaag aaccccaaaa ccaaaataaa atactcaaaa gaaaaataca
      781 acaaagcaaa aaagcagtta taaataatct tgatttcaca aaatcaaata tttttttaaa
      841 catcattatt ccttagtaaa gtaaaaacaa attaatatgc aaatattttg caaaaattta
      901 atagattaag attaaaatga tacaattttg aatgttaaaa aaaattaaag gagttttttt
      961 atggctgaac cagcgtttat aaaaattgaa ggttccacac aaggtttgat ttcaagcggt
     1021 gcatctactg aagcgagtat tggcaataga tataaatcgg gtcatgaaga tgaaatcatg
     1081 gctcaagaga tatctcatat tgtaaccgta cctgttgatc agcaaagcgg acaaccttct
     1141 ggacaaagag ttcataagcc tttttctttt acttgctcat taaataaatc tgtgcctttg
     1201 ctatataatg cacttaccaa aggagaaaga cttccaacag tcgaagttca ttggtttaga
     1261 accgcaacaa gtggcggatc tgaacatttt tttactacaa aattggaaga tgcaattatt
     1321 acaaatattg aattaataat gccaaatgcg caagagtcaa gtaatcatga taaaaccgag
     1381 cttttaaaag tttcaatgag ctatagaaaa gtagtttggg aacatactgc tgctggaact
     1441 agcggaagtg atgattggag agagggcaaa gcttaattat aatttatctt aaataatcct
     1501 gactaaaata cataattata gttgggattg tatcgtgaat tatatccatg gcataattat
     1561 gatacgacct tatacttatt tgtactaata atttgcataa ttaaagcttg tttttatatt
     1621 atttttatcc ttttataggt tttacatttg atttttattc tagcagtaaa acaattttta
     1681 tttaatttta ctcataacaa ataaattgat atttaaaaat ttagtatatt tattctatat
     1741 gtgttaaatt ttttatcaat acagatatat tattatccac tttaagatta ttggtttcta
     1801 aattgaaaat tgcatagctt aatactccta atataatcaa tactggcaca acgat
//
LOCUS       DAQSLY010000173         1831 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.174, whole genome shotgun sequence.
ACCESSION   DAQSLY010000173 DAQSLY010000000
VERSION     DAQSLY010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1831
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.174"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            43..249
                     /locus_tag="R2H98_001737"
     CDS             43..249
                     /locus_tag="R2H98_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002899137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEE9024591.1"
                     /translation="MTNNDFESILKKCNLSKKEFATLCDLPYPTLMNWVKADKTPNWV
                     KSWLENYIKAQKYNKIKDLIKDDL"
     gene            complement(504..1697)
                     /locus_tag="R2H98_001738"
     CDS             complement(504..1697)
                     /locus_tag="R2H98_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9024592.1"
                     /translation="MKDYSKEINDLKKIKSQVIDKLDFKEFENIKSQINETSCNPSKI
                     ISQKNANIKNNSFVDLTQWAIRSVDLEKIEFTSLIDDFLDKGSISFLTSEANKGKTFL
                     SFAICKHLLEFNKIRKIIYFDGDNSKITIKSRIKKSMQIGGYYFLDYPAFNYIQTSNA
                     LECGTDEIEVDFNFIVEKYLEPLMQSGGLVNVFIVFDSLFNFFNGDMNDNKKVAEFMK
                     IIKKISHKGEATFLFIHHKGKSAENEFMGGVNFLNATDNLFKIQTSNNDGEILNIELN
                     TKKARNFLPYNLKVDIDLNTLDLKIERAINENDTNFLTKAKEIIEQKGEILQGELLEL
                     LEKSKTDTHAIKKLESGKGLYFNIIEKSRATGGKALKYYVPLKENKTIINGIEINVEQ
                     TLFSE"
BASE COUNT          602 a          278 c          194 g          757 t
ORIGIN      
        1 tatgctacaa tatagctatt aaattaatat aaaggcttaa ttatgactaa taacgatttt
       61 gaaagcattt taaaaaaatg caacctatct aaaaaagagt ttgctactct ttgcgacttg
      121 ccctatccta ctttgatgaa ttgggttaaa gccgataaaa cgcctaactg ggttaaatct
      181 tggcttgaaa actatatcaa agctcaaaaa tacaataaga ttaaagactt aataaaagat
      241 gatttgtaag ttttgatgat gtgtgctcaa aattgagcag tgctaattgc taggtgtctt
      301 caaatttgaa gacaccccct tcaaccactt tttataaaaa atactaaatt aaaataagcg
      361 attttaagcg tttttatttt ttgtctaagg tgttttatcg gtaaaaatac ttttttgatt
      421 ttaggagtgt ttttattaag ctatggctat aagataataa ttaagtaaaa agctatatga
      481 attaaactca catagctttt tacttattcg ctaaataaag tttgctcgac atttatttct
      541 atgccgttaa tgatggtttt attctctttt aaaggcacat aatattttaa agcttttcca
      601 cccgttgctc ttgatttttc tattatatta aaatataacc cttttccact ttctagcttt
      661 ttaatggcat gtgtatcggt ttttgatttt tctaaaagct ctaataactc cccttgcaaa
      721 atctcgcctt tttgttctat gatttcttta gcttttgtaa gaaagtttgt atcgttttca
      781 tttattgctc tttctatttt taaatcaagc gtatttaagt ctatatctac ctttaaatta
      841 taaggtaaaa aatttcttgc cttttttgta tttaattcta tatttaaaat ttctccatcg
      901 ttattacttg tttgtatttt aaaaaggtta tcggtcgcat ttaagaaatt aaccccaccc
      961 atgaactcat tttcagcact ctttcccttg tgatgtataa ataaaaaagt agcttcgcct
     1021 ttatgactta tttttttaat tattttcata aattcagcta cttttttatt atcattcata
     1081 tcaccattaa aaaagttaaa aaggctatca aatacgataa aaacattaac caaaccaccg
     1141 ctttgcatta aaggttctag atatttttca acaataaagt taaaatcaac ttctatctca
     1201 tcagttccac actctaaagc attgcttgtt tgtatataat taaaagcagg ataatctaaa
     1261 aaataatatc cccctatttg catacttttt ttaatcctgc ttttaatggt tattttgcta
     1321 ttatcaccat caaaataaat aatttttcta atcttgttaa attctaataa atgcttgcaa
     1381 atagcaaaac ttaaaaaagt tttaccctta ttagcttcac ttgttaaaaa actaatactt
     1441 cctttatcca aaaaatcatc gattaaagat gtaaattcta ttttttctaa atcaacgctt
     1501 cttatagccc attgtgttaa atctacaaaa gaattatttt ttatatttgc atttttttgt
     1561 gatataattt tactagggtt gcaacttgtt tcatttattt gacttttaat attttcaaat
     1621 tctttaaagt caagtttatc tataacttgg ctttttattt tttttaaatc attaatttct
     1681 ttactataat ctttcatttt attaccttta aaaataaatt cattttttta ttaaaataat
     1741 tcttaaagta tttttccata taagaaaaaa aactatttaa gcctttttta tctctttggt
     1801 agtcttgtct taactctttc attaaataag c
//
LOCUS       DAQSLY010000174         1803 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.175, whole genome shotgun sequence.
ACCESSION   DAQSLY010000174 DAQSLY010000000
VERSION     DAQSLY010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.175"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..784)
                     /locus_tag="R2H98_001739"
     CDS             complement(<1..784)
                     /locus_tag="R2H98_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024593.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQKGNENSLEQ
                     LSYIFNNITYASEFGFRINEEGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKG"
     gene            943..1134
                     /gene="rpmI"
                     /locus_tag="R2H98_001740"
     CDS             943..1134
                     /gene="rpmI"
                     /locus_tag="R2H98_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEE9024594.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1228..1581
                     /gene="rplT"
                     /locus_tag="R2H98_001741"
     CDS             1228..1581
                     /gene="rplT"
                     /locus_tag="R2H98_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEE9024595.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
BASE COUNT          633 a          222 c          279 g          669 t
ORIGIN      
        1 cacccttgag aattttttgt aaattttgat gagagcttag ttctaaagtg gcaggtttca
       61 taaaaaagtt aaattctttt tcgttttgag tttttatatc atggtagata aaattcatta
      121 aaagaccaga ttttgatact tctgcatttt tagttaaata aggttttaaa atttcattag
      181 aagaagtgtt ttctatggct ttatcaaagt gaaaattagt tattttatta tctaacatta
      241 aagtatttaa atttgtgata ttacttaatg ccaaatcaat ttcttcttga ttgttgtaaa
      301 ttcttgaaat ttggcctaaa aattctccat tatctgttga aaaacctgat gatagttttg
      361 aaataagatc gcgacttaaa taagcattat catcttgtaa aaattctgaa tttatagatt
      421 ttaatgaact atgatagctg tttaaaagat aaggtagatc aattttattg tagtttaaat
      481 tttcatcttg ttttgcgagt tctttcgcta tgcttctaac gcttttaatg ttgatatcat
      541 aagattctgg tatatttgca attttattta aatctttatc aaaaaaacct tcttcattga
      601 ttctaaatcc aaattcacta gcataagtga tattattaaa aatataactc aattgttcta
      661 agctattttc atttcctttt tgatctaagg ctttgctatc tttaatcaaa tttagagcag
      721 agctattctg caaaggatta gataaggtta aattttgata tggatttgcc gaatttatag
      781 tcattttaaa tctttccaaa atattgctga tttttttata agcaaaatgt gtgccaagtt
      841 ttttaaaaat taaattcagt caaaaattag aaaaaatttg atagtattta tcttttcttt
      901 taaagtttga aaaataaaaa tttatctaaa taaggaaagc gtatgccaaa gatgaaaagc
      961 gttaaaagcg cagttaaacg cttcaaagta ggtaaaaata aaatcaaaag aggctcagct
     1021 tttagaagtc atattttgac taaaaaacct gcaaaaagaa tgcgtgatct tcgcacagct
     1081 aaatatgtgc atagcacaaa tgtaaaagct gttgaaaaaa tgctaggaat ttaagttttt
     1141 gactaaaagt cattcaaact cccctctgag ataaaatttc aagggcaagc tccaaatttg
     1201 gacgccactt tatgaaagga aataaaaatg gcaagagtaa aaacaggtgt tgttagacgc
     1261 cgcagacata aaaaagtttt aaaattagcg cgtggttttt atagtggacg ccgcaaacat
     1321 tttagaaagg caaaagaaca attagaaaga agtctagtct atgcttatcg tgatagacgc
     1381 cgtaaaaaaa gagacttccg tcgtctttgg attgtgcgta tcaatgctgc ttgcagactc
     1441 aatgatttaa gttattcaag atttatcaat ggtcttaaaa aagcaggcat tgaacttgat
     1501 agaaaaattc tagcagattt agctatgaat gatgctgctg cttttgcaaa aattgcagag
     1561 gccgcaaaaa aagcactttg attttttagt gtaagaattt caagattttt gatttcttga
     1621 aattcttaat tttttagtat taatttagtt tagctagaac atcttcataa catttgagtt
     1681 gatttaagat tattttatta atctcatttg tcatttctag tttttgacct tttatattaa
     1741 gataatagta tttaaaatca ctgtattttt gtatgaaagt ttttaaatat ctaggtttga
     1801 aat
//
LOCUS       DAQSLY010000175         1787 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.176, whole genome shotgun sequence.
ACCESSION   DAQSLY010000175 DAQSLY010000000
VERSION     DAQSLY010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1787
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.176"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            58..1683
                     /locus_tag="R2H98_001742"
     CDS             58..1683
                     /locus_tag="R2H98_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002903366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024596.1"
                     /translation="MSRVIKINFTDVNFHIKEFQKVYILENCKLYFYKPFHLQTEDKN
                     NGKEFEDKNRTIHKEQEIKKINSQDQLNEKEDITKDYAQKIDKEINKFDENNFILQTK
                     KQRQIDPDNYDIFYDVYTSKDNDIKSLNEKLGYDGFEVKNGIAKVEADFFDKCLKEKK
                     YVLIPRLVSLDKNEELHFDPVPLEDKGFVVTDFRKGKKGEKNIDLSFQRSIAKIKNPN
                     LTLQSPKEFLQALNDNRDFTEDDKKEQAQAIQEACGKKADEITKILLKEDKSLKDIIT
                     DKEKLEERIGRLQDNKNKSPKELNLLGRLEFLQRNQKKVKDYKDIIKDLQNPQKTSNG
                     KQDSVKNIDPLDMMATNSTTPNQEEQKNKNINSKDIGDAGEYAASMLFTKRSTRYLSN
                     RRKLDTNFNTKGFNHTIPDFLVTLNDYPTLVEVKNVQDQALTEQISFELKLAREYELD
                     YLFLCNHYTKLIDNITNLEIFNKDNKNHKGSRSGFIYHRHAHRSIKTIFKEMYLHHIK
                     GAAPNKIIIKRLNLNNSANIEEELNKNKQIQKN"
BASE COUNT          842 a          206 c          257 g          482 t
ORIGIN      
        1 aatatcgtga tgaatgctcc aaacttttaa acgatgctat aaaaaaggct aaggagaatg
       61 agtagagtga taaaaattaa ctttactgat gtcaattttc atattaaaga atttcaaaag
      121 gtttatatac tagaaaattg taaattgtat ttttataagc cttttcattt acaaacagaa
      181 gataaaaaca atggaaaaga atttgaagat aaaaatagaa caattcataa agaacaagaa
      241 attaaaaaaa taaattctca agatcaatta aatgaaaaag aagatatcac aaaagattat
      301 gcacaaaaaa tcgataaaga gataaataaa tttgatgaaa ataacttcat cttgcaaact
      361 aaaaaacaac gacaaatcga tcctgataat tatgatatat tttacgatgt ttatacaagt
      421 aaagataatg atatcaaaag tttaaatgaa aagctaggat atgatggctt tgaagtaaaa
      481 aatggtatag ctaaagttga agcagatttt tttgacaaat gcttaaaaga aaaaaaatat
      541 gttttaatac caagattagt atctttagat aaaaatgaag aattacactt tgatcctgtg
      601 cctttagaag ataagggctt tgtagtgact gattttagaa aaggaaaaaa gggagagaaa
      661 aatatagatt taagctttca aagaagcata gctaaaataa aaaatcctaa tttaactttg
      721 caaagcccta aagaattcct acaagcttta aatgacaata gagattttac agaagatgat
      781 aaaaaagagc aagcacaagc tatccaagaa gcttgtggaa aaaaagcaga tgaaataacc
      841 aaaatcttgc ttaaagagga taaaagttta aaagatatta ttacagataa agaaaaatta
      901 gaggaaagaa ttggcagatt gcaagataat aaaaacaaat cacctaaaga actaaatcta
      961 ctaggtagac tggaattttt acaaagaaat caaaaaaaag ttaaagatta taaagacatt
     1021 ataaaagatc ttcaaaaccc tcaaaagact agcaatggta agcaagatag tgttaaaaat
     1081 atagatcctt tagatatgat ggcaacaaac agcaccactc caaaccaaga agaacaaaaa
     1141 aataaaaata tcaattcaaa agatatagga gatgcaggag aatatgctgc ttctatgctt
     1201 tttactaaaa gatcaactag gtatttatct aatagaagaa aactagatac gaattttaac
     1261 actaaaggtt ttaatcacac catacctgat tttttagtaa cgctaaatga ttaccctact
     1321 ttagtagagg ttaaaaatgt tcaagatcaa gctttaacag aacaaataag ctttgagtta
     1381 aaacttgcta gagaatatga gcttgattat ttatttttat gtaatcatta cacaaaatta
     1441 atagataata taactaatct agagatattt aataaagaca ataaaaacca taaaggatca
     1501 agaagtggtt ttatctacca cagacatgct cacagaagca taaaaacaat atttaaagaa
     1561 atgtatctac atcacataaa aggagcagca cctaataaaa ttatcataaa aagattaaat
     1621 ttaaataatt ctgctaatat agaagaagaa ttaaacaaaa acaaacaaat acaaaaaaat
     1681 taaaggaaaa acaataaaaa ccttagaaga tatcaaagct atgagctatc aagaaaaaga
     1741 tgaattagaa gatttagttc ttgaaattat agataataat gatttag
//
LOCUS       DAQSLY010000176         1720 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.177, whole genome shotgun sequence.
ACCESSION   DAQSLY010000176 DAQSLY010000000
VERSION     DAQSLY010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1720
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.177"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            59..826
                     /locus_tag="R2H98_001743"
     CDS             59..826
                     /locus_tag="R2H98_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VgrG protein"
                     /protein_id="HEE9024597.1"
                     /translation="MGVNEEGYNELTLSNIKDKEQIYLKAQKDYDELVQHNFTQRILN
                     DKDSIVDGIYNERIKKVHTQTIDLAKNVNVGGEYLTNVGLSKDTIVGLSNTLNVGVDN
                     KVRVSKNSSEYVGENKDIEIGANQNTIIHKDEIRNVKGNKKEVVEGHYGINVSDKMQV
                     LSEKEMDYKSKDNILFTSNESIGFESDKNTSMVADNITTYAKTIHELKADSEATIQVG
                     ETIINAKPDCVIIKAGGVEVTIDSNGLVVRGGELKAE"
     gene            840..1619
                     /locus_tag="R2H98_001744"
     CDS             840..1619
                     /locus_tag="R2H98_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024598.1"
                     /translation="MNKPFYKLKRFYIPCGVLVALIIFTSLTYHFLQRPLELIFWDRY
                     YYEKEYQNAKDMYKLFKSNEEEFKKVFKEQNLNEELKTNQKELLNYMHHFKRDSNFMQ
                     ILGLDNAYLKALRDKTSIFGRKSENNLNYFYLASNSTTNLDEMNNFISIIDKYIIFIN
                     KIDTLPDTYTLMKIAFNADYFLFNLVPFASSLDKNFICSIPQKEQLLENMINSYEKMD
                     LLYKTKLKTEIQEMIYPAIYATKKLNHFIDIAKGRLNACGK"
BASE COUNT          719 a          200 c          272 g          529 t
ORIGIN      
        1 tccaagttta gtaaatcttc cttttaatga tcaccaaact tctctttctt ctaaaaccat
       61 aggtgttaat gaagaaggtt ataatgaact taccctctca aatataaaag ataaagaaca
      121 aatttattta aaagcgcaaa aggattatga tgaattagta caacataatt tcactcaaag
      181 aattttaaat gataaagatt ctatagtgga tggaatttat aatgaaagga ttaaaaaggt
      241 tcatactcaa accatagact tagctaaaaa tgtcaatgta ggaggagaat acttaactaa
      301 tgtaggctta tctaaagata ccatagtagg attaagcaat accttaaatg taggagtaga
      361 taataaagta agagtatcta agaattctag cgaatatgta ggagaaaaca aagatataga
      421 aataggtgct aatcaaaaca ctattatcca taaggatgag ataagaaatg tgaagggaaa
      481 taaaaaggag gtggttgagg ggcattatgg tattaatgtc agtgataaaa tgcaagtgtt
      541 aagcgagaaa gagatggatt ataaaagcaa agataatatt ctttttacaa gcaatgaatc
      601 cataggattt gaaagtgata aaaatacaag catggtagct gataatatca caacttatgc
      661 aaaaactatt catgagttaa aagccgatag cgaggcgact atacaggtag gagaaacaat
      721 tattaatgca aaacctgatt gtgttatcat taaagcaggt ggagttgaag taactataga
      781 ctctaatgga cttgtggtta gaggtggaga acttaaagca gagtaataaa ggataaacaa
      841 tgaataaacc cttctacaaa cttaaaagat tttatatacc ttgtggtgtg cttgtagctt
      901 tgattatttt tacaagctta acttatcatt ttttacaacg acctttagag cttatctttt
      961 gggatagata ttattatgaa aaagaatatc aaaatgctaa agatatgtat aaactattta
     1021 aaagtaatga agaagaattt aaaaaagttt ttaaagagca aaacttaaat gaagaattaa
     1081 aaacaaatca aaaagaattg ttaaattata tgcatcattt caaaagagat tctaatttta
     1141 tgcaaatttt aggtttggat aatgcttatc ttaaagctct tagagataag acaagtatat
     1201 ttggaagaaa aagtgaaaat aatcttaatt atttttatct tgcttctaat agcactacta
     1261 atttagatga aatgaataat tttataagca ttatagataa atatatcatt tttatcaata
     1321 aaatagatac attgcctgac acttatacac tcatgaaaat agcctttaac gctgattatt
     1381 ttctttttaa tctcgtccca tttgcttcaa gcctagataa aaactttatt tgctctatac
     1441 cgcaaaaaga acaattatta gaaaatatga taaattctta tgaaaaaatg gatttattat
     1501 acaaaacaaa actaaaaacc gaaattcaag aaatgatata cccagcgata tatgcaacaa
     1561 aaaaacttaa tcatttcata gatattgcca aaggaagatt aaatgcatgt ggaaaataat
     1621 ttaagtcctg aagatagaca aggtatagaa aattacctta ttattttaaa tacgataagt
     1681 tttctaggcg atttgaatat aaaatataac aatcataatg
//
LOCUS       DAQSLY010000177         1697 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.178, whole genome shotgun sequence.
ACCESSION   DAQSLY010000177 DAQSLY010000000
VERSION     DAQSLY010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1697
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.178"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..983
                     /locus_tag="R2H98_001745"
     CDS             <1..983
                     /locus_tag="R2H98_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEE9024599.1"
                     /translation="QCEKFENNFAKYCGVKHCIGVANGLDALRLIIKAYNFKENDEII
                     VPANTYIASILAITDNKCKPILIEPDINTYNINPDLIEEKITKKTKAIMVVHLYGQVC
                     DMEKIQLLANKYNLKIIEDCAQAHGAIYKDKRVGNLGDAAGFSFYPGKNLGALGDAGC
                     ICTNDDNFASKIRALANYGSHKKYENLYIGLNSRLDEIQAAFLDIKLKYLDEDNNKRK
                     NIANFYLQNIKNENIILPSNKFDHVWHLFIVKTKLRDELQHYLNNHDIQTIIHYPIPP
                     HKQKCYKDLNHLQLPVTENIHQEVLSLPISPTMKENDFKKVADILNKWKV"
     gene            complement(1015..>1697)
                     /locus_tag="R2H98_001746"
     CDS             complement(1015..>1697)
                     /locus_tag="R2H98_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEE9024600.1"
                     /translation="LSSIYFIVNEELSFSYFSNINLIKNKNILYVDTKSISKDNAFAT
                     IKTLAKELNFKEPNDNDEYKFTQKFWNELYYLLPYRLIVNNDILIIVSDENKVFLDND
                     KHYNEIKDDLIDIKKELVNTKSKLFDKISINIENKNWIIIKDDKALINDLREYFEKFM
                     IILEKKANERLENMVKEEDVLNYLREHQDLGKKIKNILDYELQHIKEHRPDIINSWEY
                     YKKFLEIF"
BASE COUNT          638 a          227 c          201 g          631 t
ORIGIN      
        1 agcaatgtga aaaatttgaa aataattttg caaaatattg tggggttaaa cattgcatag
       61 gcgttgcaaa tggacttgat gctttaagat tgatcataaa agcttataat tttaaagaaa
      121 atgacgaaat catagttccc gcaaatacat acatagcatc aattttagct ataactgata
      181 ataaatgcaa acctatactg atagagcctg atatcaatac ttacaacata aatcctgatt
      241 taatagaaga aaagatcaca aaaaaaacta aagctatcat ggttgttcat ctttatggtc
      301 aagtttgtga tatggaaaaa attcagttgt tagctaataa atacaattta aaaattatag
      361 aagattgtgc tcaagcacat ggcgctattt ataaagataa acgagttgga aatttgggag
      421 atgccgccgg tttttctttt taccctggta aaaatttagg tgctttaggg gatgctgggt
      481 gtatttgcac caatgatgat aattttgcat ctaaaattag agctttagca aactatggct
      541 ctcataaaaa atatgaaaat ttatatatag gattaaattc tagattagat gagatacaag
      601 ctgctttttt ggatataaaa ttaaaatatt tagatgaaga caataataaa agaaaaaata
      661 tagcaaattt ttatctacaa aatataaaaa atgaaaatat tatattacct agtaataaat
      721 ttgatcatgt ttggcatcta tttatagtca aaacaaagct tagagatgaa ttacaacact
      781 atctaaataa tcatgatatt caaactatta tacactatcc tatccctcct cataagcaaa
      841 aatgctataa agatttaaat catttacaac tacccgtaac agaaaacatc catcaagaag
      901 ttttgtcatt acctatatcg ccaacaatga aagaaaatga ttttaaaaaa gtggctgata
      961 tattaaacaa atggaaagtc tgatagatcg ctctccattt tattcgctta ttctttaaaa
     1021 aatttcaaga aattttttat agtattccca actattaata atatctggtc tatgctcttt
     1081 tatatgttgt aattcataat ccaaaatatt tttaattttt tttcctaaat cttgatgctc
     1141 ccttaaataa tttaaaacat cttcttcttt taccatattt tcaagtcttt cattcgcttt
     1201 tttctctaaa ataatcataa atttttcaaa atattctcta agatcattga ttaaagcttt
     1261 atcatcttta ataatgatcc aatttttatt ttctatatta attgaaattt tatcaaataa
     1321 cttgcttttt gtatttacaa gttctttttt tatatcaatt aaatcatctt ttatctcatt
     1381 ataatgctta tcattgtcta aaaatacttt attttcatca gatactatta tcaaaatatc
     1441 attattgaca ataagtctat aaggtagtaa ataatacaat tcgttccaaa atttctgcgt
     1501 aaatttatat tcatcattat catttggttc tttaaaatta agctctttag caagagtttt
     1561 tatagtggca aatgcattat cttttgaaat tgatttcgtg tctacatata atatattttt
     1621 gtttttaatc aaatttatat ttgaaaaata gctaaaactt agctcttcgt ttacgataaa
     1681 atagatagat gataaat
//
LOCUS       DAQSLY010000178         1692 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.179, whole genome shotgun sequence.
ACCESSION   DAQSLY010000178 DAQSLY010000000
VERSION     DAQSLY010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.179"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            96..>1692
                     /locus_tag="R2H98_001747"
     CDS             96..>1692
                     /locus_tag="R2H98_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024601.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNVRMYNYSPIALNLDAKNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKHNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNN"
BASE COUNT          640 a          204 c          265 g          583 t
ORIGIN      
        1 aaaaatgaat tttgtcaata ctttaaatta aaatatttat aaaagtttag ttttatagac
       61 taaagttatt ttataaaata aactaaagga taaaaatgaa aaagattttt tatggagtta
      121 tagcttttgt tgttgtgctt ttgattgcta tttataccat acttttcaca agttttggta
      181 ataatatagt ggcaaatata gcgcaaaaaa agatcaaaga aagtgcggga ttagatgtaa
      241 atatcacgca ttttaattta cgtttttcaa gccttgaatt gcaagcaaat atcgcaaata
      301 tggcagattt taatcttcag ggagctttga gtccttttaa gcttggattt gatcttgact
      361 atcttatttc tttaaagcaa aattatgcta aaaatttagg tttaaattta aatcaaaacc
      421 tttcttttgg cggtaaaatt caaggcaagg caagtgattt tactttagat ggaaggggtt
      481 acttactagg ttcaaatgta cttttaaatg tgagaatgta taattacagc cctatcgctt
      541 taaatttaga tgcaaaaaat cttaagatag aagaaatact tcatctttta tcttatccta
      601 gttatgctaa aggtttttta aatgctcagg caaaaatttc agcacagaat ttaaaacctg
      661 atggaaatat tatcataaaa cttgatacaa gctatataaa ctacgaggcg ataaaaaaag
      721 atttttcttt agacttgcct ttaaattcta atcctaaagc agaaatttta gccaatgtta
      781 aagaagataa gatttatgct gtaagtaaaa tttacaatga ttatcttaac ttacaaaccc
      841 aaaaaactct ttatgatatg agtaagaata ttttaagtac tgattttaat ttaaatattc
      901 cttctcttgc aaagcttgaa aaacttacaa aaactagatt aaatggtagt ttgggcgtga
      961 taggcgaaac aagtgttgta aataatgcct tatcaagttt aaatgctcaa gttatcggac
     1021 ttggtggaga ggtaaaggca agtttgaaac ataataaaat ttttgcagat attaatgaag
     1081 caagtttgga aaaattatta gctcttgcag gatatggagc tttagtttct ggaaatttaa
     1141 atgctaaact tttaaatgcg gatttggatt tttctaattt cgatcttgag gcaaaaataa
     1201 acaatgcaaa gattaacacc aatgagctta aaaaaattgc taaaatagaa cttccaaata
     1261 caatttttag tcttgatgct aaagcaaatg caaaaaatag taatatttct tacaatgctt
     1321 tacttgcttc aaatttactt aatatcaaaa aacttcaagg aacttataat ttaaaaaata
     1381 gtgagttaaa tacagattta aatgctttta ttgatgattt gtctcagttt agtgctatag
     1441 cgggacaaaa attacaaggt aaggcagatc ttaatgcaaa agctcatatt ataggtactc
     1501 aaatacaaaa tttaaatgca aatgcaaatt tggcagatgg cgtaatcaaa gctgattcaa
     1561 atggtaaaaa acttgatttg aacattgata aacttgattt atctaaactt tttgttatag
     1621 caggtatgcc aaattatgcc agtggggttg ttaatgcaaa agttaattta gataatatcg
     1681 attttaacaa cc
//
LOCUS       DAQSLY010000179         1692 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.180, whole genome shotgun sequence.
ACCESSION   DAQSLY010000179 DAQSLY010000000
VERSION     DAQSLY010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.180"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            323..505
                     /locus_tag="R2H98_001748"
     CDS             323..505
                     /locus_tag="R2H98_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEE9024602.1"
                     /translation="MQDTNKDFLTIQEVITLYSLSKDTQNKYRMQKKIPYIKIGKKIF
                     YEKVKLDEWFKNHTIN"
     gene            516..761
                     /locus_tag="R2H98_001749"
     CDS             516..761
                     /locus_tag="R2H98_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024603.1"
                     /translation="MNNKQALEYLKSELCFIFNTRFRYFDFEIFNLLEKKIQILQKLP
                     DFEREIKELLAILESNKKLFLKKNTFIKKEQKRQILL"
     gene            813..>1692
                     /locus_tag="R2H98_001750"
     CDS             813..>1692
                     /locus_tag="R2H98_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024604.1"
                     /translation="MSISLFNDEIKAYIKNYYSIVDFLYLRYGLEFDKAGNERHNKSL
                     KIKTNTCLITDFNGSFSGDIIDFIAFKENVELKEALIIFSDFNRLPTQKVGSFKPQKE
                     PLKDNSYLKNIAYSLQANFNLANSDFIECKALEKAFFNDFRLFMHLCKLNFLKDDEFE
                     SILKDYFAFSKDDKSLAFILKDKNEIKSVAIREKLFKNELVKWFKVKGSSNKFIKLIK
                     AKEKGLLKDYCFIFSGIKEIIVSELLGLNAVCFQSDSMMKNIHSHEQINELLNLIDNK
                     RIVFIVENDESSFKANL"
BASE COUNT          707 a          172 c          232 g          581 t
ORIGIN      
        1 ttatttaaga tataattaat atataataca attaattaaa atattttaat tttaattttg
       61 tcttgtcttt tattttaaaa actgctaaaa tacttcttaa atatttcaaa taatattttt
      121 taatttaatg aaatttgaaa agctttaaac tttttaatct agtgcgtttc aatcaagtcg
      181 ccaaacaaag aattaaaacg cacaatttca ttataagagc catagtttaa gcccttaaaa
      241 gaaattgtaa taaatttaaa cttactaatt cctttttaat ggctttatta attgcattaa
      301 taaaatttag aaaggacaca aaatgcaaga cacaaacaaa gactttttaa ctatacaaga
      361 agtaattaca ctttacagct taagcaaaga tactcaaaat aaatacagaa tgcaaaagaa
      421 aataccttat attaaaatag gtaaaaaaat cttttatgaa aaagttaagc ttgatgagtg
      481 gtttaaaaac catactatca attaaggcgg tagttatgaa taataaacaa gccttagaat
      541 atttaaaaag cgaattatgt tttatattta atactagatt tagatacttt gactttgaaa
      601 tttttaattt acttgagaaa aaaatacaaa ttttgcaaaa attaccagac tttgaaagag
      661 aaataaaaga gcttttagca attttagaaa gtaataaaaa actttttctt aaaaagaata
      721 ctttcattaa aaaagaacaa aaaaggcaaa ttcttttata aatgcttgta aggcaactta
      781 tgaagcttta aaacacaaat taaaggctta aaatgagcat aagccttttt aatgatgaaa
      841 taaaggcgta tataaaaaat tattattcta tagttgattt tttatattta cgctatggtt
      901 tggagtttga caaagcagga aatgaaagac acaataaaag ccttaaaata aaaactaaca
      961 cttgcttgat tactgatttt aatggaagtt ttagtgggga tataatcgat tttatagcct
     1021 ttaaagaaaa tgtagagtta aaagaagctt tgattatatt tagtgatttt aacaggttac
     1081 ccacgcaaaa ggtgggtagc tttaaaccac aaaaagagcc tttaaaagat aatagctatt
     1141 taaaaaatat agcttattct ttacaggcta attttaattt agctaatagc gattttatag
     1201 aatgtaaggc tttagaaaaa gcttttttta atgattttag actttttatg cacttatgta
     1261 aattaaattt tttaaaagat gatgagtttg aaagtatttt aaaagactat tttgcttttt
     1321 caaaagatga taaaagtttg gcttttatct tgaaagataa aaacgaaatt aaaagcgtgg
     1381 ctattagaga aaagcttttt aaaaatgaat tagtcaaatg gtttaaagtt aaaggtagta
     1441 gcaataaatt tataaaactt ataaaagcca aagaaaaagg cttattaaaa gattattgtt
     1501 ttatctttag tggcatcaaa gaaattatag taagtgaatt gctaggatta aacgctgttt
     1561 gttttcaaag tgatagcatg atgaaaaata tacactcaca cgagcaaata aatgagcttt
     1621 taaacctcat cgataataaa agaatagttt ttatagttga aaacgatgag agcagtttta
     1681 aagctaattt ag
//
LOCUS       DAQSLY010000180         1673 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.181, whole genome shotgun sequence.
ACCESSION   DAQSLY010000180 DAQSLY010000000
VERSION     DAQSLY010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1673
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.181"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..973
                     /locus_tag="R2H98_001751"
     CDS             <1..973
                     /locus_tag="R2H98_001751"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEE9024605.1"
                     /translation="KIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFV
                     MVSDVARVLVSKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQI
                     SKTKLLKKALDQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSF
                     EIFTGNGFDVHEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDI
                     GELYPDTDMKFKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSN
                     IAHTLDLDEFRINVKATTTEKLGFIGRKEGMAVLSNVNLKYFDWTRL"
     gene            970..>1673
                     /locus_tag="R2H98_001752"
     CDS             970..>1673
                     /locus_tag="R2H98_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEE9024606.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKATEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCI"
BASE COUNT          641 a          234 c          274 g          524 t
ORIGIN      
        1 aaaaatagtt gttacctcta gtaatatcac ttatatgaaa aaatttacta aaaactatga
       61 attcatagaa ggtggtgata ccagagcaga atccttaaaa aaagccttag agctcataga
      121 tagcgaattt gttatggtaa gtgatgtagc aagggtattg gtgagtaaaa atttgtttga
      181 tcgtttgatt gaaaatttag ataaagcaga ttgtattacc cctgctttaa aagttgcaga
      241 tacaacactt tttgacaatg aagccttgca aagagaaaaa atcaaactca ttcaaacccc
      301 gcaaatttct aaaaccaaat tgcttaaaaa agccttggat caaaacctag aatttacaga
      361 tgatagcaca gctatagctg caatgggtgg aaaaatttgg tttgttgaag gtgaagaaaa
      421 tgcaagaaaa ctaaccttta aagaagatct taaaaaactt gatttgccta cacctagctt
      481 tgaaattttt actggcaatg gttttgatgt gcatgaattt ggagagaatc gccctttgct
      541 tttagcagga gtgcaaattc atcctactat ggggcttaaa gcacacagcg atggagatgt
      601 tttagctcac tctttaaccg atgcgatttt aggtgctgca ggacttggag atataggaga
      661 gctttatcct gatactgata tgaaatttaa aaatgccaac tccatggagc ttttaaaaca
      721 agcttatgat aaagtcagag aaataggttt tgaactcatt aatatagaca tttgcgtcat
      781 ggcacaaagc cctaaactta aagactttaa acaagctatg caaagcaata tagctcatac
      841 tttagattta gatgaattta gaatcaatgt taaagccaca acaacggaaa aattgggttt
      901 tattggaaga aaagaaggta tggcggtgct tagtaatgta aatttaaaat attttgattg
      961 gacaagatta tgaaagtttt aattattgaa aatgaaattt atctagcgca aagcattagc
     1021 attaaactaa gtgatgctgg atatagctgt gaaattatta actcgtttga tgaatacaat
     1081 ggtgaaaaat actatgacat tatactgctt tctacaaata ctaataattt tctaaaagcc
     1141 gtaggtcagt ttaaacatag tattattatt ttgcttattt cttatataag tacagataca
     1201 gtttcaaatc ctttgaaatt aggtgctagt gattatattc aaaaaccctt tatgatagaa
     1261 gagctgatta gaaaaataaa gcattatcag gattttagaa aactttcaat ccttaataaa
     1321 gcttatcaaa gctatatcaa atcaagatta gaaacaatca aaattccaga gtataattat
     1381 aaaaaattaa aacttccatt gatattaaaa tccaacaagc aaagcagtgc tgatgctttt
     1441 gtttttaatt atgcaaatga atgtgacatt actctttctt ttattgattt aacatctaca
     1501 aattcagttg aaaaagttat gaaacttccc acagaaaaca atctcttatt tttgagtaat
     1561 tttcaagcat taaaagcaac agaaaaggaa aaactcctag attttataca aaacaaaaat
     1621 gttattttgc ataccaattc aaatacagat gatttaaaaa taaactgcat taa
//
LOCUS       DAQSLY010000181         1581 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.182, whole genome shotgun sequence.
ACCESSION   DAQSLY010000181 DAQSLY010000000
VERSION     DAQSLY010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.182"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..206
                     /locus_tag="R2H98_001753"
     CDS             <1..206
                     /locus_tag="R2H98_001753"
                     /inference="COORDINATES: protein motif:HMM:NF013050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024607.1"
                     /translation="LLNKNPTAYNLFAQDFTNRNIFDWKIPTNWFQSFNPIFIIILAP
                     IASYIWIFLEKKIYIFLPLENLL"
     gene            233..599
                     /locus_tag="R2H98_001754"
                     /pseudo
     CDS             233..599
                     /locus_tag="R2H98_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="di-/tripeptide transporter"
     gene            771..>1581
                     /locus_tag="R2H98_001755"
     CDS             771..>1581
                     /locus_tag="R2H98_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEE9024608.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILAC"
BASE COUNT          517 a          217 c          247 g          600 t
ORIGIN      
        1 tacttttaaa caaaaaccct accgcttata atctttttgc gcaagatttt acaaatagaa
       61 atatttttga ttggaaaatt ccaacaaact ggtttcaatc ttttaatcca atttttatca
      121 tcatacttgc tcctatagca agttatattt ggatattttt agagaaaaaa atatatattt
      181 ttcttccatt ggaaaattta ctttaggaat attatttgcc ggtattggct ttatgatgat
      241 gacctttgct tcacaaaatc taataaacaa caatggttta ccaatatcca tggcttggat
      301 tatcataagt atattctttt taacacttgg ggaactatgc gtgtctccta ttggactctc
      361 tataatggct aaggttgccc ctgatttaat caaaaatcaa atcataggac tttggtttgt
      421 agcaagtgcg cttggaaatt ttgttgcagg acttataaga ggaaatgtca atattaaaaa
      481 catcgatcaa cttcctaata tttttagaca atgcatgtgg atgctttttg ttgtagcact
      541 tttgcttttt attgctaaaa aaccatctta acaaaaaaaa taagcaatta tctaactaaa
      601 cttaaaatac aaaatacacc aaagttgaaa attgatctta atatttcttt tttttatatt
      661 tgcaaaaaag taacattatg atataaatca tttaaaaata ttacaaagtt atacatattt
      721 tttaatttct tgtctataat ttataaataa aaatacacaa aggatataaa ttgagtaaaa
      781 atgtaaaaaa tttagatact tcattttttg gacatccaaa accactttta tctctttcac
      841 ttactgagct ttgggaaaga ttttcttttt acggaattcg tcccttgctt taccttttta
      901 tgatagcaag ttttgaaaaa agtggaatga acttaaaacc tgaagaagca agtgcaatta
      961 tgggaatttt tgcaagttgt ttatatcttg ctgctttgcc aggtggatgg cttgcggaca
     1021 attacttagg acaaaaaaga gcaattttac taggtgctct aactatagca tttggacatt
     1081 tgtgcatagc cttttcttat tttaacaata aaatgatttt tgttggtatg gtttttttgg
     1141 ttataggtac aggacttttt aaaacttgtg cttctgtaat ggttggaatg ctttataaaa
     1201 aaaatgatgc aaggcgtgac tctggtttta ctctttttta tatgtgcttt aattttggtg
     1261 cttttgtagc tcctttaatt tgcggctttt tacaaaaaga atacggatgg cattttggtt
     1321 ttggtgcagg tgggattggt atgcttttag cggtaattat tttctaccta aaaactatgc
     1381 ctgatttaaa agaatttgat gaaaaagttg gcatagactc tacttgggat agaccaagca
     1441 aaaaaagcaa aaacgcattt tacatcatca ttgtatcagg tattgttttg cttggagcaa
     1501 tatttttaat ccttggtggt tttataaaat tagatgcaca agttattaat aaaaatatta
     1561 ttctaactat cttagcttgt g
//
LOCUS       DAQSLY010000182         1533 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.183, whole genome shotgun sequence.
ACCESSION   DAQSLY010000182 DAQSLY010000000
VERSION     DAQSLY010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.183"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            2..1021
                     /locus_tag="R2H98_001756"
     CDS             2..1021
                     /locus_tag="R2H98_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024609.1"
                     /translation="MYYPYYLKKYLAKIACLFIPNKNIRAIIREKLLNQFMQIKLDNL
                     NSYIPKDIVDNIEKYDNEHFYKINHIIKSKHKGFFDFDEKSKNPTSPLNPWAYIRVKN
                     EALTLKASLKSILPAIQRGIIGYNDCNDGSEEIILEFCKQYPSFIPVKYPYEVQIENP
                     QSEENKLYSYYNYVASFIPQGEWLIKIDVDHIYDAKRLYKSFYIPKKDYDILCYSRID
                     FYYKDDDRAEVFIVKYKSINNILNNKSNDQWLIKNNHLKWAESMHEDRYCIEYLDIKK
                     LKIYQTEFLNYHFPYFKRSLDKNKIELIPIDDFSIKEYKDIISPDMVTKEKLLYLKKY
                     IKENQ"
     gene            1018..>1533
                     /locus_tag="R2H98_001757"
     CDS             1018..>1533
                     /locus_tag="R2H98_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024610.1"
                     /translation="MKKSKSIQIIKQQGIAEFIKYKKNKIYTKYEKKFNINIFTPYLL
                     KFCKPLKDDYKFILFSYGVSGHWAFKSFLKYCELDDFVLYQNNYSYYKEYKNFNKKNY
                     YVEIAWYQSMQPKYKHISKILNKNKPVVILTRDPISRLKTMVNHGSYKIEELGKNELK
                     NFYINEDIFENL"
BASE COUNT          680 a          141 c          204 g          508 t
ORIGIN      
        1 gatatattat ccgtattatt taaaaaaata tttagcgaag attgcatgct tgtttatacc
       61 aaataaaaat ataagggcaa taattagaga aaaattactc aatcaattta tgcaaataaa
      121 acttgataat ttaaattcgt atattccaaa agatatagta gataatatag aaaaatatga
      181 taatgaacat ttttataaaa taaatcacat tataaaatct aaacacaaag gattttttga
      241 ttttgacgaa aaatctaaaa atccaacatc acctttaaat ccatgggctt atataagagt
      301 aaaaaatgaa gcattaactt tgaaagcttc gttaaaaagt atacttccgg ctatacaaag
      361 agggattata ggatataatg attgcaatga tggaagcgaa gagataatct tagaattttg
      421 caaacagtat ccttctttta taccagtaaa atacccttat gaagtacaaa ttgaaaatcc
      481 gcaaagtgaa gaaaataaac tttatagtta ttataattat gttgcaagct ttattccaca
      541 aggagaatgg cttataaaaa tagatgttga tcatatttat gatgctaaaa gactttacaa
      601 aagtttttat atacctaaaa aagactatga tatactttgt tattctcgaa tagattttta
      661 ttataaagat gatgatagag ctgaggtatt tatagtaaag tataagagta tcaataatat
      721 cttgaataac aagagtaatg atcaatggtt gataaaaaat aatcatctta aatgggcaga
      781 aagtatgcat gaagataggt attgtataga gtatttggat ataaaaaagt taaaaattta
      841 tcaaacagaa tttttaaact atcattttcc atattttaag agaagcttag ataaaaataa
      901 gatagaatta attcccatag atgattttag tatcaaagaa tataaagata taatatcacc
      961 tgatatggta actaaagaaa aattgctata tttaaaaaaa tatataaagg aaaatcaatg
     1021 aaaaaatcga aatccataca aataatcaaa cagcaaggaa tagctgaatt tataaaatat
     1081 aaaaaaaata aaatatacac taaatatgag aaaaaattta atatcaatat ttttactcct
     1141 tatttattaa aattttgtaa acctttaaaa gatgattata aatttatatt atttagctat
     1201 ggtgtaagtg ggcattgggc ttttaaaagt tttttaaaat attgcgaatt agatgacttt
     1261 gtcttatatc agaataatta tagttattat aaagaatata agaattttaa taaaaaaaat
     1321 tattatgtag aaatagcttg gtatcaaagt atgcagccaa aatataagca tataagtaaa
     1381 attttaaata aaaataagcc tgttgtaatt ttgacaagag atcctatatc tagattaaaa
     1441 acaatggtta atcatggttc ttataagatt gaagaacttg gtaaaaatga attaaaaaat
     1501 ttttatataa atgaagatat atttgaaaat tta
//
LOCUS       DAQSLY010000183         1524 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.184, whole genome shotgun sequence.
ACCESSION   DAQSLY010000183 DAQSLY010000000
VERSION     DAQSLY010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1524
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.184"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..683)
                     /locus_tag="R2H98_001758"
     CDS             complement(<1..683)
                     /locus_tag="R2H98_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEE9024611.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLS"
     gene            complement(683..1507)
                     /locus_tag="R2H98_001759"
     CDS             complement(683..1507)
                     /locus_tag="R2H98_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024612.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKTNDFWQDERKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKSVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
BASE COUNT          556 a          234 c          151 g          583 t
ORIGIN      
        1 gaaagtaaag aattcatttc tctagaaatc gaactttcat tacttaaggc gtattcttct
       61 tttaaaagtg ctagaaaaat aatttgttct ttatgttcaa gattgtattc tttaaaaata
      121 tcagccaata cattataaaa tttacttttt tttagtcttt ctttgatatg tttttcataa
      181 agtttaattt gattttttat ttcactatta taagcacttt tttgtataaa acttaatctt
      241 tcgtataatt gaatacgcgc aaattcatct tttaaatatt ctaaataatc tgcataagcc
      301 tcttgtttct caaaatttaa acgaggtttt gcttctaaaa attctaaaaa atattcactt
      361 agactaagct cactttgcaa taaggcaaga gttaatgttt gagttttatt attttctaaa
      421 cttttaaaaa aactcgaatt ttgatttaca aaacctcttt cgataagttt ttttaaatcc
      481 tccaaagcat caagataaag atacttatca tttccaaaaa ttgtcgataa taaagtaaag
      541 gcattgatag aagaaataga aacgacataa tttctacaaa gttctctaag aatcaaagcc
      601 tcatttttag cacacttaag ctctttataa atttgagtat cttctatatt tttcaaactt
      661 aaaaaatttt ttaatttttc cattattttt taaattcctt aagctcatct tcgttaaatt
      721 ctacgcaaat attttcatct aaaaaatgac cttcaaaagg tagataacaa atttttagtt
      781 ttccattatt aagcaaaaaa ttattattaa attgtaaatt ttgcagatct tcaaaacact
      841 catcacatgt atttttaagc ttctcatgta aaagattttg aaatttttga ttttcagtat
      901 tatacaaatc atttagtttt acaaatgcgt gagcattaat atcataaaca aaattattta
      961 actctaaaat agcacggctc ataccatctt cataaaaata ataccattct tcaaaactaa
     1021 tttttccatc ttgtaaaaaa ataggctttt ggcgaatttg ttcaaaacta aatacactct
     1081 tatgaacagg atgaaattct ttaaaatcat cattaaaacc tataaaatca agactacgct
     1141 ttatacgaat gccatcttgc gtttcgacaa gttctaaagt agttgttcct aaattttctc
     1201 cttgaaaatt tttattatca tatgtaagca ttttagaaga attgatttta tattttttac
     1261 gctcatcctg ccaaaaatca tttgtcttaa cgagcggaat ctctaaattt ccatttatat
     1321 catcaataat taaaaaacta gaacttgttt gatttttatc cctgtcaaaa agtggagtca
     1381 taggcgcatt atcataaact atggcaaaaa tttctttatc ctgcaaatga taaaaataca
     1441 attcaccttt ataaacttgc gctaaagcta gatttacaaa gcaaaatacc agtaaaaaaa
     1501 atttcaaact ctatccttca attt
//
LOCUS       DAQSLY010000184         1523 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.185, whole genome shotgun sequence.
ACCESSION   DAQSLY010000184 DAQSLY010000000
VERSION     DAQSLY010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1523)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1523)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1523
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.185"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1252
                     /locus_tag="R2H98_001760"
     CDS             <1..1252
                     /locus_tag="R2H98_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024613.1"
                     /translation="PQMITHPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYAN
                     KATIFCADSSYPILAKHGIKPDYVCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHK
                     KTISYLEKNQRKYILIIKGQPFARYLGLDDYGYINAGMSVSHMAYELAENLGHKNIIL
                     IGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDRFSTIAYGGNGKVQSSEIWTLFRQI
                     FENFIAFSKSKTYNCTEGGARIESAIEKPFKELCEDLLENKKDKKFKKLQVLNTKKQV
                     ELGLKIYQKIKKNMNLSLNFKKECKKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLS
                     NKKYLFLQEILGPTLHHEQSILTPLYLKDIKDESDKQNKLFAWVYAHEALIENIIELL
                     EAQDKRLKIAILPLQDFLEKKKAL"
     gene            complement(1283..>1523)
                     /locus_tag="R2H98_001761"
     CDS             complement(1283..>1523)
                     /locus_tag="R2H98_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEE9024614.1"
                     /translation="TNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFA
                     AESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT          587 a          219 c          232 g          485 t
ORIGIN      
        1 tcctcaaatg attacccatc ctagttataa agaattactt tctaaaagaa agggtataag
       61 tgatacagct atcattgttt ctacaggacc atctcttact aaacaattgc ctttattaaa
      121 aaaatatgct aataaagcta cgattttttg tgctgattct tcttatccta ttttagctaa
      181 acatggtata aagcctgatt atgtttgtat gttggaacgc gatgaaatag tagctgaatg
      241 ttttaataat gattttaaag attttgataa agacatcatt tttctagtag cttctttggt
      301 gcataaaaaa accatttctt atcttgaaaa aaatcaaaga aaatacattt taatcataaa
      361 aggccagcct tttgctagat acttggggct agacgattat ggatatatta acgcgggtat
      421 gagtgtatct catatggctt atgaactggc tgaaaattta ggacataaaa acatcattct
      481 cataggtcag gatttggctt atgccaaaga tgggcaaaca cactctcaag gttttatcca
      541 tgctaattta cacaatggag actatgaaag agatttagat agatttagca ctatagctta
      601 tggaggaaat ggaaaagttc aaagttctga aatttggaca ctttttagac aaatttttga
      661 aaatttcatt gcttttagca aaagtaaaac ttataattgc accgaaggag gtgctagaat
      721 agaaagcgct atagaaaaac cttttaaaga actttgcgaa gatttactcg aaaataaaaa
      781 agataaaaaa tttaaaaaat tacaagtttt aaatactaaa aaacaagtag aactcggatt
      841 aaaaatctat caaaaaatca aaaaaaatat gaatctatcc ttgaatttta aaaaagagtg
      901 taaaaaagtt caaaaacaaa ttcacaatct tactcatgga aagaacaaac tctctcttga
      961 acaaataaac caaaatatag acaaaatcaa agaaaaactt tcaaataaaa aatatctctt
     1021 tttgcaagaa attttaggcc ctactttaca tcatgaacaa agtatattaa cgcctttata
     1081 tcttaaagat atcaaagatg aatctgataa acaaaataaa ctttttgctt gggtttatgc
     1141 acacgaagct ttgatagaaa atatcataga acttttagaa gctcaagata aaagacttaa
     1201 aatcgctatt ttacctttgc aagacttctt agaaaagaaa aaagcacttt aaaagcttag
     1261 atgcataaaa gcatctaaga aattattgaa gaagttttaa aacattttgt tgtactgcat
     1321 tagcctgact catagcataa gaacctgact gtgcaaggat gttatattta gaaaaatttg
     1381 cactttcagc tgcaaagtct acatctctta tggttgattc agctgcttta acatttacct
     1441 gagttacagt gatgttgttt atagtaactt gaagttgatt ttgcactgaa ccaatgtcgg
     1501 ctctgatttg atcaagattt gtt
//
LOCUS       DAQSLY010000185         1486 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.186, whole genome shotgun sequence.
ACCESSION   DAQSLY010000185 DAQSLY010000000
VERSION     DAQSLY010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.186"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..888)
                     /locus_tag="R2H98_001762"
     CDS             complement(<1..888)
                     /locus_tag="R2H98_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEE9024615.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELCSSLDEENSLFLKALEY
                     RKRADVLFANLSVLKDYEREIKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLK"
     gene            950..>1486
                     /locus_tag="R2H98_001763"
     CDS             950..>1486
                     /locus_tag="R2H98_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEE9024616.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNF"
BASE COUNT          527 a          207 c          177 g          575 t
ORIGIN      
        1 tttcaaactc aaggtaaaat ctaacttttc ttttaaattt tgtctttgta tgtttaaatt
       61 tttagctttt tgttctaatt ttttagcatt tttataatat aaattagcgc tttgcttagg
      121 attaaattca agcttaaatt caagctcttt gccttcaaaa tcatcaagct taatttccct
      181 ttcataatct tttaaaacac tcaaatttgc aaacaataca tcggcccttt ttctgtattc
      241 taaagctttt aagaataaag aattttcttc atctaaacta gaacaaagtt cttgtaaatt
      301 ttgtattttt ttatccactt gtgcaagttt taaatttttt atttgtttga ttttactctc
      361 ataaatgctt gtaaatttgc gagaaaaata atctgcaaag tctttaattt cctcaaaatt
      421 ttcatccatt ttataaggct ttaaagactc taaaatcaca ttaggtttta caacacgata
      481 acttttatca atgtgtctta aagcctctat gatcaaatct ttttcatctg taagaataac
      541 attggtattt ttacccgtaa attcaaaata aattttgctc tcatagcttt tataagcctt
      601 attagctttt acactaaaac ataaaatacg attgccttca aggactttaa cttcctttat
      661 aaaagcattg ctaaaatact ttttaagcat aaaatcaaaa ggtgcattat aattttttgc
      721 attaaattta gctgtataaa tcgcactcat tgcacgagta agatcaaaaa taaatctttc
      781 tctatcaaag cttaattcca aaatattgtc attgatacgc ttgataaaat cgattttttt
      841 aaaccgagaa aaaaaagttt gtaattgtaa aagttctgtg tatttcataa aagaaattat
      901 aaaatatttt ggcgaatttt gtggtagaat tacattaaaa aggaaatttg tgcagcttaa
      961 tgagctaaat tgcgtgattt tatgtggtgg taaatctagc cgtatgggac aagataaaag
     1021 caaattgatt cttaaaaatc aaaatttaac tcaatttcaa gtagataaat tttctaaaat
     1081 ttttaaaaat gtctatgtga gtgcgaaaga agacaaattt gaaaaccatt ttagcttgat
     1141 aaaagattct ttagaatttg aagtttactc tcctatgctt gcgctttact ctatactttc
     1201 aaattttaaa aatgaatttg tttttgtttt aagtgtagat agtcctaaag taggtgaaaa
     1261 tgaactttta aaaatgcttc cttttttaga acaaaactat aaaataatca tagcaaaaac
     1321 ccctttgcat aaacatccct tatgtggctt ttatcacagc tctttagctc aaacttgtaa
     1381 aaatttctta gaaaaaaatg aacaaaaaat aggactttta ttttctgaga ttaaaaccaa
     1441 atttgtagaa tttgaagatg aagatgcttt tttaaatctt aatttt
//
LOCUS       DAQSLY010000186         1456 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.187, whole genome shotgun sequence.
ACCESSION   DAQSLY010000186 DAQSLY010000000
VERSION     DAQSLY010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.187"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(33..1055)
                     /gene="selD"
                     /locus_tag="R2H98_001764"
     CDS             complement(33..1055)
                     /gene="selD"
                     /locus_tag="R2H98_001764"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(1005..1007),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEE9024617.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDVNILKELLEGANDKVQECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFQNEILFLEGAKEYFNMGLIPAGAYKNLEF
                     IKELIPDLNEEKLLLCDPQTSGGLLISISEKESLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1065..>1456)
                     /gene="yedF"
                     /locus_tag="R2H98_001765"
     CDS             complement(1065..>1456)
                     /gene="yedF"
                     /locus_tag="R2H98_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEE9024618.1"
                     /translation="EFCIKVQKKNFDSSKVNIHDYNVLFLKTDKVGEGELGQNLLVGF
                     LSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFFNKS
                     KELKIGNIGNAYEILNELFGKAKIITL"
BASE COUNT          488 a          249 c          176 g          543 t
ORIGIN      
        1 aaaaatttta atgggtatat aagtaacaaa aattaagaaa tgataatatc attttcttgc
       61 ttatttacaa ccttagcaat aattttagct tgaatatttt catcttctag tttttttaaa
      121 cattctaagg attctttttc acttatagaa attaaaagtc ctcctgaagt ttgcggatca
      181 caaagtaata atttttcttc atttaaatca gggataagtt cttttataaa ttctaaattt
      241 ttataagctc cagcaggaat taaacccata ttaaaatatt cttttgctcc ctctagaaaa
      301 agaatttcat tttggaaaat ttcaaaagaa atatttttat ttagcatttc ttttaaatgt
      361 cctaaaagtc caaaacctgt gacatcactc atggcacttg gatgaaattt aagagcaatt
      421 tgactggctt tataatttaa ctccatcatg tttttaagca ttatatctaa atgtttttga
      481 tttaacattt gcgcctttaa agctgtactt aaaattcctg ttcctaaagg cttggttaaa
      541 atgatacaat ctccgatttt agaagtatta ttagcaataa atttactagg atgtactttt
      601 cctgtaacac taagtccaaa aaaaagctca gtgctttcta tagtatggcc acccacaact
      661 aaagcattgc attcttgaac cttatcattt gcaccttcta aaagctcttt taagatattt
      721 acatcatgat tacaagtatc aaaacctact atatttaagg cattaattac ctctgcaccc
      781 atagcaaaaa catcgcttaa agcatttgct gcagcaatag caccaaaatg ataagcacta
      841 tctactatag gagtgataaa atcaagcgtt tgcaccaaag ctaaatcggg actgatttga
      901 tatacgcttg catcttcatt atttccgata tcactaagta aagcaggagt tttttgcatg
      961 aaatttaaaa ttgttttaag accacccggg cttaatttcg ctgctcagcc tgctgcttta
     1021 acaaaatgcg ttaaattttg atttttatat tgcagtgttt ttccttatag agtaatgatt
     1081 tttgctttac caaaaagctc gtttaaaatt tcataagcat tgcctatatt tcctatttta
     1141 agttctttgc ttttattaaa aaattctaga caagctccac aacttatgat ctcaatacct
     1201 aaattttcaa gttctttcat agctaaatgt gctttatgat tttcatcaac attgattaaa
     1261 acactttcat ttacgcaaag aattttactt ggagcatgat ctaaattttt taaggtactt
     1321 aaaaatccta caagtaaatt ttgtcccaat tcaccctcac ccactttgtc ggtttttaaa
     1381 aataaaacat tataatcgtg aatatttact ttactagaat caaaattctt tttttgtact
     1441 ttgatgcaaa actctt
//
LOCUS       DAQSLY010000187         1455 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.188, whole genome shotgun sequence.
ACCESSION   DAQSLY010000187 DAQSLY010000000
VERSION     DAQSLY010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1455
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.188"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>1455
                     /locus_tag="R2H98_001766"
     CDS             <1..>1455
                     /locus_tag="R2H98_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002914594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system membrane subunit TssM"
                     /protein_id="HEE9024619.1"
                     /translation="LSYKGFKEAKQLYYKLNEDVLKNTLLKEMEYTLLTDTNKENLIK
                     TLYMYRSLFEQKYFNKEILKIWINENWNTLSKYSISKDDFLEGVDELKQFNLKSFTED
                     ENSIHTGKRKLESISRTQRIYILLNFLNSDKPKEKYLIKEDLGFAANSVFSNNSQITS
                     IDKIYTKVGMMDFLNDLNQQVDTAINIESWMLDNNFKENKNTLTMGILKLYLSEYQNA
                     WQNLLASLQPVRYNTKEAMLNELNILSKKENPLYSLLKIVSSNTNLNDAVLLTQAYNL
                     GLNAGEIRSNFIGVSNAFTQYHKLVNKNTLLSVGNIEVGKGTDDEKILDILNTNITNM
                     SNKIIDFSSNNNQSAEEKISYALGGNKDANDPFAVFQMNIKKLPNDLERYYSQLSNYS
                     WNFIENHGISLFNTAWINEVYNPFVNDIAPYYPFNDESVADLSMDSFKTFFGRNGTLN
                     SFYKKYLNNVLVKRKNNYSINSQFASKLNFSKEF"
BASE COUNT          593 a          166 c          204 g          492 t
ORIGIN      
        1 atctctcata caaaggattt aaagaagcta aacaacttta ttataaactg aatgaagatg
       61 tgttaaaaaa tactttatta aaagaaatgg aatatacttt acttaccgat acaaataaag
      121 aaaatttaat caaaacatta tatatgtata gatctttgtt tgaacaaaaa tattttaata
      181 aagaaatact aaaaatttgg attaacgaga attggaatac tttaagtaag tattcaatct
      241 ctaaagatga ctttctagaa ggggtggatg agcttaaaca atttaatctt aaatctttta
      301 cagaagatga aaacagtata catacaggaa aaagaaaact tgagagtata agtagaactc
      361 aaagaattta cattcttctt aattttttaa atagcgataa acctaaagaa aaatatctta
      421 taaaagagga tttaggtttt gctgcaaata gtgtattttc aaataattct caaataactt
      481 ctatagataa aatatataca aaagttggta tgatggactt tttaaatgat ttaaatcaac
      541 aagttgacac cgcaatcaat attgaatctt ggatgctaga taacaatttt aaagaaaata
      601 aaaacacttt gactatgggt attttaaaat tatacttaag tgaataccaa aatgcttggc
      661 aaaatctact cgcttcattg caacctgtta ggtataatac caaagaggca atgcttaatg
      721 agcttaatat cttatcaaaa aaagaaaacc ctttatattc tttgttaaaa attgttagtt
      781 ctaatacaaa tttaaatgat gcagttttac taactcaagc ctacaattta gggttaaatg
      841 ctggggaaat tagatcaaat tttattgggg taagcaatgc tttcacacaa tatcataagc
      901 tagtaaacaa aaatacactt ttgagtgttg gtaatataga agtgggcaaa ggcactgatg
      961 atgaaaaaat attagatatt cttaatacaa atattacaaa tatgtccaat aaaattatag
     1021 attttagttc taataataac caaagtgctg aagaaaaaat ttcatatgct cttggaggca
     1081 ataaagatgc caatgatcct tttgctgtat ttcaaatgaa cataaaaaaa ttacctaatg
     1141 atttagagag atattatagt cagctttcta attattcgtg gaattttata gaaaatcatg
     1201 gtatttcttt atttaatact gcttggatta atgaagtgta taatccattt gttaatgata
     1261 ttgcaccata ttatcctttt aatgatgaga gtgtagcaga tcttagtatg gatagtttta
     1321 aaacattttt tggaagaaat gggacattaa atagttttta taaaaaatac ttgaacaatg
     1381 ttttagtaaa aagaaaaaat aactattcta tcaattctca atttgcttca aaattaaatt
     1441 tctctaaaga atttt
//
LOCUS       DAQSLY010000188         1385 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.189, whole genome shotgun sequence.
ACCESSION   DAQSLY010000188 DAQSLY010000000
VERSION     DAQSLY010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.189"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            7..1128
                     /locus_tag="R2H98_001767"
     CDS             7..1128
                     /locus_tag="R2H98_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEE9024620.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEALCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1146..>1385
                     /locus_tag="R2H98_001768"
     CDS             1146..>1385
                     /locus_tag="R2H98_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEE9024621.1"
                     /translation="MQNSLEAYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEIWE"
BASE COUNT          535 a          159 c          246 g          445 t
ORIGIN      
        1 tggggaatga tttattgtga tcactgcgtg atgccaaata ctagacctgg tattaatttt
       61 acaaaagata aagaaggtaa aaatatctgt tcagcttgca tcaatcataa aaataaagaa
      121 aatattgatt ataaagcaag atttaaagag cttgaagcct tatgcgataa ataccgcaga
      181 atgaatggaa aatttgaata tgattgcgct attgccgtaa gtggaggtaa agattcgcat
      241 tttcaagtgc atatcatgaa agaaaaactt ggaatgaatc ctattctttt tagcgttgaa
      301 gataatttca ccatgactga agcaggtaag aaaaatctta aaaatttaag tgaaactttt
      361 ggttgtcata ttattagctt aaagcctgat atcaaaactc aaaaaaaagt tatgctaaaa
      421 acctttgaaa aatatggaaa acccacttgg tttattgata gactgattta cagctatcct
      481 tttgctatgg ctttaaaatt taatacacct ttattggttt atggagaaaa tgttagttat
      541 gaatatggag gtagtgatac cgaagaaact cctagcgcta aagaaatatt tttaaatggt
      601 gtagctagtg atttaaatat aaatgaattt atagatgatg aaatcaaaga agaaaatttg
      661 caactctttt tcaatccaaa caaagataaa ctcgataaac ttaaccctat ctatctaagt
      721 tattttgtaa aatggaattc ttatagcaat tatatttttg ctaaaagtcg tggttttact
      781 gatctagaag gcgaatggga tagaacaatg tgtgcagaaa attttgatca agttgatagt
      841 ataggctata tcctacacgc ttggatgaaa taccctaaat ttggtcatgc ttgtgcgagt
      901 gattacgcag ctcgtttcgt gcgttatgga cttttaagca gaaaagaagc tattgaactt
      961 gtgcaaaaaa gagatcataa gcttgacaat aaatgcgttg aagatttttg caatttcata
     1021 ggtattagta aaactacatt ttggaaaata gtagaaaaac attacaatat ggatttattt
     1081 tataaaaatg attttggaga atttaaatta aaaaataaat tacaataaaa atataaagga
     1141 aaaaaatgca aaactcatta gaagcttata caatgaaata taatgaaaat ggatacggat
     1201 tactttttcc agatggtcat gtagtacgtt tttatgaaag aattttaaaa tacaaactaa
     1261 ataaaataaa tggaaattta cttgattttg gttgtggcaa tggtgtacat tcagcgtatt
     1321 ttcaaagcaa agggtttaaa acttttggaa tagatatagt tccaagttta aaagaaattt
     1381 gggag
//
LOCUS       DAQSLY010000189         1362 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.190, whole genome shotgun sequence.
ACCESSION   DAQSLY010000189 DAQSLY010000000
VERSION     DAQSLY010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1362
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.190"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..1356
                     /locus_tag="R2H98_001769"
     CDS             <1..1356
                     /locus_tag="R2H98_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024622.1"
                     /translation="STQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKML
                     NHGIFQEFLKERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSSYPILAKHG
                     IKPDYVCMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRAYMLVHR
                     PLNFAASLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEH
                     IHGSQGEEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTYNCTEG
                     GARIEGTIEKPFLWACENLLDKDLNKPFDFPKFLDKKLAKEKLEKTKKYLQKSILESK
                     EFIKKTQTQLQKLRYTLEKNDKNFQTLEKIKNDLLNLFKEFKKLKLFNELCQAIYFHN
                     ECEILKFEVLNTNKQKENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIIK
                     K"
BASE COUNT          551 a          183 c          207 g          421 t
ORIGIN      
        1 agcactcaaa tacaaaatat aaatactcaa ctgatagaaa tgatacgatt tatcgtttta
       61 aacaaaggta atgatccaca tgattcttta gttggaatca aacataccct agataatctc
      121 cctaaaatgt taaatcatgg aatttttcaa gaatttctca aagaaagaag agctaaggtt
      181 gaaaatgcta tcattgtttc tacaggacca agtcttataa aacaacttcc tttgttaaaa
      241 aaatatgcta ataaagctac aattttttgt gcggattctt cttatcctat tttagctaaa
      301 catggtataa agcctgatta tgtttgcatg ctagagcgtg atgatatagt ttctaaatgt
      361 tttgataatg attttggcga ttttaacaaa ggcatacttt tcatacttgc ttctgtggtt
      421 cacaaagaag tattagattt tttagaaaaa gatcaaagag cttatatgct tgtacatcgc
      481 cctttaaatt ttgcagctag tttaaaactt gatgaatatg gatatcttgg agtaggacac
      541 agtgtttcca atatgatcta tgaactagca ggagctttaa gatttgaaaa tatcattttt
      601 ataggacagg atttagctta tggcgaggat ggaagttcac atcctaaaga gcatatacat
      661 ggaagtcaag gtgaagaaat cagaggagaa aaatatacac tagcttatgg aggaaaaggc
      721 aaagtaagaa cacaacttac ttggaatttg tttcgtcaag cttttgaaaa agatatattt
      781 tgggcaaaag aaaaactcaa tatcaccacc tacaactgca ccgaaggtgg agcaagaata
      841 gaaggaacta tagaaaaacc ttttttatgg gcttgtgaga atttacttga taaagattta
      901 aataaacctt ttgattttcc aaaatttcta gataaaaaac tagccaaaga aaaattagaa
      961 aaaacaaaaa aatatctcca aaaaagcatt ttagaatcca aagaatttat aaaaaaaact
     1021 caaactcagc ttcaaaagct tagatacact ttagaaaaaa atgacaagaa ttttcaaact
     1081 cttgaaaaaa tcaaaaatga tcttttaaat ctttttaaag aatttaaaaa actcaagctt
     1141 tttaatgaac tttgtcaagc tatttatttt cataacgaat gtgaaatttt aaaatttgaa
     1201 gttttaaaca caaataagca aaaagaaaat ttaatagact ttttgaaaat acaacacaat
     1261 tggtttatcc aaggtttagg atatcttgat actcaaaaca aaaccataga aaaaagttta
     1321 gaaaattgga attttgacga tataatcaaa aaataattag ga
//
LOCUS       DAQSLY010000190         1333 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.191, whole genome shotgun sequence.
ACCESSION   DAQSLY010000190 DAQSLY010000000
VERSION     DAQSLY010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.191"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>1333
                     /gene="murJ"
                     /locus_tag="R2H98_001770"
     CDS             <1..>1333
                     /gene="murJ"
                     /locus_tag="R2H98_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEE9024623.1"
                     /translation="DVLIALFLGAGLYSDIFFVALKMPAFFRRIFAEGAFGQSFLPNF
                     VKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADTIALAAPLVAIN
                     FWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKNAPQNTLYYFSY
                     ATVLSGVAQLILHLLVLKNNPVIRAMTLSIKFKKAKAKLQGFYGNFFHGVLGSSATQF
                     SSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKILKHLKSDQENLA
                     LKFMQRALALLSILLIASSIVGSVFALEISKLLFERGNFTHEDSVITAYVLIAYLIGL
                     LPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDESLKVIAVALSS
                     SISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIKPYIL"
BASE COUNT          355 a          173 c          227 g          578 t
ORIGIN      
        1 gagatgtttt aatagcgctt tttttaggag cagggcttta tagtgatatt ttttttgtgg
       61 ctttaaaaat gcctgctttt tttagaagaa tttttgcaga aggggctttt ggacaaagtt
      121 ttttgcctaa ttttgtaaaa gcgaaaaaaa aaggagcttt ttgcgttagt gtaatgatgc
      181 aatttagcct tatagttttt ttattttgtc ttttggtaag ttttttctcc tcttttttta
      241 ccaagctttt tgcttttggg tttaacgcag atactatagc tttagcggct cctttggtgg
      301 cgattaattt ttggtatttg ttttttattt ttttagttac ttttttagga gctattttaa
      361 attatagaca aaaatttttc attacctctt tttctgcggc attatttaac ttaagtattg
      421 ttatagctgc cttttttgtg gataaaaatg caccgcaaaa tacactttat tatttttctt
      481 atgcaacggt tttaagtggg gtggcacagc ttattttaca tttgcttgtt ttaaaaaaca
      541 atcctgtaat acgtgctatg actttaagta taaaatttaa aaaagccaag gcgaaattac
      601 aaggttttta tggcaatttt tttcatggag ttttaggttc ttctgcgact caatttagct
      661 cattgcttga tacaactata gctagttttt taatgagcgg gagtatttct tatctttatt
      721 atgcaaatcg tgtcttccaa ctccccctgg cactttttgc tattgcttta actcaagttt
      781 cttttccaaa aattttaaaa catttaaaaa gtgatcaaga aaatttagcc ttaaaattta
      841 tgcaaagagc attagcactt ttaagcattt tgcttattgc ttctagtatt gtaggttctg
      901 tgtttgcttt ggaaatttca aagcttttat ttgaaagagg aaatttcact cacgaagata
      961 gtgtgattac ggcttatgtt ttgattgctt atcttatagg gcttttacct tttggtttgc
     1021 aaaagctttt ttctttgtgg ctttatgcaa aatttaaaca aaaaacagca gcttggatcg
     1081 cggtaaaatc tttaattatc agtgctttat gttctatggc ttttatattt ttgattaaag
     1141 atgaaagttt aaaggttatt gcagtggcac tttcaagctc tattagtgct ttttatttgc
     1201 ttggagctaa tatcaaagaa tttggtttta agaaattttt tgctttaata tctattaaaa
     1261 tttgcttgtt ggttatagtt gctttgattg tttttacgat cttacttatt ttgattaaac
     1321 cttatatttt aag
//
LOCUS       DAQSLY010000191         1326 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.192, whole genome shotgun sequence.
ACCESSION   DAQSLY010000191 DAQSLY010000000
VERSION     DAQSLY010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1326
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.192"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(381..1184)
                     /locus_tag="R2H98_001771"
                     /pseudo
     CDS             complement(381..1184)
                     /locus_tag="R2H98_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
BASE COUNT          460 a          170 c          166 g          530 t
ORIGIN      
        1 gcactataag caaaaatggt attatcatat aaccatttat cacataaagt atttaaattg
       61 ggcttattgg atccaaaaaa atatatccat tgattcaaaa aacaatttat actattttga
      121 tcatttggtt taattgtaag agattctctt gaatataaat agcttatatg atttaacatt
      181 gttttttgaa tcgaaatagg atctctaacc aataataccg tatctttata attgcaagat
      241 aaagatacta tatgccccat atcttcgcta tttaatcctt ggtaataatt atttaaacaa
      301 atagccttaa aaaatgatct agttaattga ttatataaat ttttgtaata tactttagga
      361 ttttcatcaa agccataagc aactgatact tcacacatat taaaataagt tataagtgca
      421 gcatggccag atccatatga gaatgatatc acaaactcat acctatctgg taaaggcaaa
      481 ttcatttccc aagcaagttc agcaggtatg ttatgataat taatttcttc gttttcatca
      541 tttaattttt taggatcaag tagtgaagga taaggatggt tttctttttt atatctttct
      601 ttaaaatcat ctgacaataa ccatttttct ataagatcaa aattttgtat aaaataatta
      661 aaattgtgaa agatattatc tgatattact ttataatctt gatgaatttt taatatattt
      721 tttattcttg gaaattcttt taggaataat tgtttattat cttgaatggc ttttaaagat
      781 tcactattta attctttaaa ttgttttaga atttctctaa aaatttgaaa ttctttattt
      841 gcttttttaa tattattttt taatttaaat ccagctcctt tataccaatt ctgataagac
      901 ttgattaaaa cttcacctat catgtaagat aaatggaatt tacatcttaa agcttcatta
      961 taatcaggac acgtttctaa gtttggatat ttaagttggg gaaagacttg tatggtttgt
     1021 tgataaattt tttgtccttg tttatgttgt tttttgattt tatagagttt tttaaataat
     1081 gctatatacc cccccccgtt atgtctatgt tctatcacag tttgacctaa tttataggca
     1141 agatggtttt tcactctttc tatggctgaa tttgggttaa gcatgggttt ttcctttaaa
     1201 ataaatcaat caaaaaaaca aggaataatt atattcaatt attgattaga gaatgataaa
     1261 gatgggtgat tgctaattat aaaatcataa taatcctcag gcacaccaat atctataaaa
     1321 taatca
//
LOCUS       DAQSLY010000192         1311 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.193, whole genome shotgun sequence.
ACCESSION   DAQSLY010000192 DAQSLY010000000
VERSION     DAQSLY010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.193"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..159
                     /locus_tag="R2H98_001772"
     CDS             <1..159
                     /locus_tag="R2H98_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024624.1"
                     /translation="NEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPN
                     VMVDKFLK"
     gene            177..>1311
                     /locus_tag="R2H98_001773"
     CDS             177..>1311
                     /locus_tag="R2H98_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEE9024625.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDNTESFLNSLLNSIDETNEFLPDHMKISQKEVVSEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLELKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKESKDLNKDFNKELNKNQEKNNLNQENIQ
                     DQNKNLKNNDQNLNLDKNLNKEIVKDTQKLVSNLTQKDFNLNKE"
BASE COUNT          588 a          149 c          175 g          399 t
ORIGIN      
        1 aatgaagaaa atttagagaa aattttaaat gctaaaaatt tagaagagct tttaaatatt
       61 ttaattgctt taaatgaaga taagatgatt aaagtatatg aagattctta tttgaaagaa
      121 aaatttccta atgtaatggt agataaattt ttaaaataat tttttttgaa ggaaaagtga
      181 tgtcaaattt agctccgcaa aatgatgttt taaatcttac gccgagtaaa acttctaata
      241 ctagtagttc ctttagtaaa acgagtaaaa ataaagaaca tgaaagtagc gatagtaaaa
      301 attcaactca agataatacg gaaagttttt taaattcttt gcttaattct attgatgaaa
      361 ccaatgaatt tttacctgat catatgaaga tcagtcaaaa agaagttgtt agtgaagcga
      421 tgaacagact tcaaaaagga gcttttgatg agagcgataa gataagcatt ttcgaatctg
      481 cttcttttat gcaaattctt tctttgttag ataagctaaa aacagataca gcagatgtta
      541 aactagcaaa tctttctact caactttcaa gtcttattaa aacagaggct aattttaatg
      601 ctttaaaagg tgcatcaaat cttagtgagc ttttggacat agctaaagat ctgggcttaa
      661 atgtaaaaaa tattaaagta gatcgtcttc ttgaacttaa agcaactttt ccaaatttag
      721 ataaggctga tttttttaag ggtgctgtgg ataatgtttt taaagaaatc atcaataata
      781 aaatttccaa tgtgagtaaa aatttaaatc acaatttaga aaatacaact catactacaa
      841 gcactcattc tacgcaaaaa acaaattcta aagatagcgg ttctttactt tctcaaactt
      901 taaaaaattt agattccata ctttcatcca aagaaagcaa acacgaaaaa aacgataaag
      961 ttaaatcaaa aatagaagaa gataccacag atgctaaaaa tactttaaaa aatatcaaaa
     1021 atgatgagtt tgcaaaaaat ttaacagaag agttaaatat aaaagataaa aaaaaccaag
     1081 ataatttaaa taaagaaagc aaagacttaa acaaagattt taataaagag ttaaataaaa
     1141 atcaagaaaa aaacaattta aatcaagaaa atatacaaga tcaaaataaa aatttaaaga
     1201 acaatgatca aaatttaaat cttgataaaa atttaaataa agaaattgtt aaagatactc
     1261 agaaattagt ttcaaattta acacaaaaag attttaatct aaataaagag c
//
LOCUS       DAQSLY010000193         1287 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.194, whole genome shotgun sequence.
ACCESSION   DAQSLY010000193 DAQSLY010000000
VERSION     DAQSLY010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.194"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>1287)
                     /locus_tag="R2H98_001774"
     CDS             complement(<1..>1287)
                     /locus_tag="R2H98_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecB"
                     /protein_id="HEE9024626.1"
                     /translation="NLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIV
                     ESKEQKVKNQAQKIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLRE
                     QNIPAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKN
                     AMENVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMS
                     VHKSKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLF
                     KENITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERG
                     FLESKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPK
                     GENFQILTQRCKSKFRHFLDESDFEKLFKRIEILLKN"
BASE COUNT          444 a          214 c          123 g          506 t
ORIGIN      
        1 atttttaagt aaaatttcaa ttcttttaaa aagcttttca aaatcactct catctaaaaa
       61 atgtctaaat ttactcttgc atctttgagt aagtatttga aaattttcac ccttaggaag
      121 ttttaaattt tgcataaaaa agtgaaaagc atttccaaaa tatagttctt tactatcaag
      181 cctttcttcg ctttgaattt cttgcaaggt aattttttca aatttttgca aagtttgaat
      241 gctttctttt ttaacgctta aaatttgttc tttgctttct aaaaaacctc tctcttgaga
      301 atgtatattt aaaaatcccc ccttaaaata acttggataa tttccattta cactttcttc
      361 atttcttttt atgatgatca aactttcctt agctcttgta aaagccacat aaagtttatt
      421 aatatcatct tcataatttg ctcttgtaat attttcttta aaaagagtat aaataggctc
      481 tttagtaagc tctcgaattt tatctttaat atggagttgc caaccttgat tgatatcata
      541 ttcaagcatg atatcttcat tgtttgaatt gtttttagat aaactatcaa gtaaaatcac
      601 atgatcaaat tccaaaccct tagatttatg cacactcata atactaattc ccatattttg
      661 ttcgcttact attttcaaag cacaaggctc aaataaaagc tttaaaaaat tctccttagt
      721 tttagcatat tcgataaatt gtattaaagc gatatcattt aaatcaagtt ttaattcttt
      781 tattaaaaaa agtacatttt ccatagcatt ttttgaaaaa tcaagggtaa tttttctcgg
      841 ctcaaaacct aaaagttcct ttaaaaatac caagtaaaac tcatcaccaa aaatacaata
      901 tttagcatat tctaaaacaa gtcttacact tgctttattt tcaagcaaaa cattactttg
      961 agtaaatgca ggaatatttt gctctcttaa aaaatccaaa accatatctg catcgctatt
     1021 tttccaacac aaaatacaaa tatcatcata agaaatattt ttagatctta aaaaattaat
     1081 ttgctcaaat aaagtttcta aagtcttttc cttaattttt tgggcttggt ttttaacctt
     1141 ttgttcctta gactccacaa tacgcacaaa accgcctttt ttactttcta aggcaaattg
     1201 ttctttataa tctttgattt tttctttaaa agtttcatta acaaaatcaa ccaaaagctc
     1261 tttagaacga taattagtat ttaaatt
//
LOCUS       DAQSLY010000194         1286 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.195, whole genome shotgun sequence.
ACCESSION   DAQSLY010000194 DAQSLY010000000
VERSION     DAQSLY010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1286)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1286)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1286
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.195"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>1286
                     /locus_tag="R2H98_001775"
     CDS             <1..>1286
                     /locus_tag="R2H98_001775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024627.1"
                     /translation="VLERVDFDIKKLIVLISINSIEWKKIEYKYYIDKDLKIIIEINI
                     PIYFKYIKLNYKDNFYITRSNMKILVTKFLGLIVSNRPDGFASRIWAFLNAMYIAKKT
                     GFKFGFVWPRFDDVGGMISKKYITIDSEENIFDKNFIQNHSYTCSRLPQTHSYDNCLG
                     PLSLKNIQKLPFYEDYGHLVTCCIPLYELIFDIDIQEYQYKLRQIWNKLQFSYKYLNI
                     KNIVENIYHKLNNHFVAIHIRGGDIVNGEHRLFIMSSLWTYLYPLELVTQLIKMLLGQ
                     KIKIIVFSDDDEAVEMIKKNLIYNQYNLENLYFSKDLTPKYLSIEENIFFNFQLLSKS
                     RYIYGSQWSTFRILAGFLGECKKQEAILDTFTYDEQYQILSDNLRSVKTNRSYKAASC
                     MYLYVIGRNIDKDKECLIKILRKGFRYDPKNLSFKI"
BASE COUNT          492 a          120 c          190 g          484 t
ORIGIN      
        1 ttgtgttaga aagggttgat tttgatatta agaagcttat tgttttgatt tctataaatt
       61 ccatagaatg gaaaaaaata gagtataaat attatattga taaagattta aaaattatta
      121 ttgaaataaa tatcccaata tattttaaat atattaaatt gaattataaa gataattttt
      181 acattacaag atctaatatg aaaattctag taacaaaatt tttaggcttg attgtatcca
      241 acagaccaga tggatttgct tcaagaatat gggctttttt aaatgctatg tatattgcaa
      301 aaaaaactgg atttaaattc ggttttgtat ggccaagatt tgatgatgtt ggtggcatga
      361 tttctaaaaa atatataact attgattctg aggaaaatat atttgataaa aattttattc
      421 aaaatcactc ttatacttgt agtcgtttgc cacaaactca tagttatgat aactgtttag
      481 gccccttgtc tttaaaaaat attcaaaaat taccttttta tgaagattat ggtcatttgg
      541 ttacatgttg tattccgctt tatgaattaa tttttgatat tgatatacaa gaatatcaat
      601 ataaactacg acaaatttgg aataaattac aattttccta caagtattta aatataaaaa
      661 atattgttga gaatatttat cataaattga ataatcattt tgtggctata catataagag
      721 gtggagatat tgttaatgga gaacatagat tgttcataat gagtagctta tggacttatt
      781 tatatccttt ggagttggta acacaattga ttaaaatgct tttaggtcaa aaaattaaaa
      841 ttatcgtatt ttcagatgat gatgaagctg ttgaaatgat taaaaaaaat cttatctata
      901 atcagtataa tttagaaaat ctttattttt ctaaagattt gaccccgaaa tatttatcta
      961 tagaagaaaa tatttttttt aattttcaac tattatctaa atcaagatat atctatggtt
     1021 ctcaatggtc tacttttagg atattagctg gatttttagg agaatgtaag aagcaagagg
     1081 caattttaga tacctttaca tatgatgaac aatatcagat tttaagcgat aatttaagaa
     1141 gcgtaaaaac taatagaagt tataaagcag caagttgtat gtatttatat gttattggac
     1201 gaaatataga taaagataag gaatgtttaa taaaaatttt aagaaagggt tttagatatg
     1261 atccaaaaaa tctctcgttt aagatt
//
LOCUS       DAQSLY010000195         1257 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.196, whole genome shotgun sequence.
ACCESSION   DAQSLY010000195 DAQSLY010000000
VERSION     DAQSLY010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.196"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..239)
                     /locus_tag="R2H98_001776"
     CDS             complement(<1..239)
                     /locus_tag="R2H98_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssG"
                     /protein_id="HEE9024628.1"
                     /translation="MNNLTSYSFFKLIKKLEKDYGRKNIFLRTNKSLKHPNKDIEKII
                     FSEHEQSVIELFINFMGLHGVSSQLPSFMLDKLSR"
     gene            complement(236..>1257)
                     /locus_tag="R2H98_001777"
     CDS             complement(236..>1257)
                     /locus_tag="R2H98_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssF"
                     /protein_id="HEE9024629.1"
                     /translation="FSLLREYFFMPHKFNFLRINGLDILNNCQGKTINIEFKFSKPFP
                     ANCIFRKELLSLSMTPIINIFTKSAEPLINNHKKDSYRIFVDRSQPKAYEIIQTLQVK
                     AHNSEGGKRLLKNYKSFERFEFLKDNQKDFYSVNTKKNSKGEVFSEISFFSSYIMDET
                     ISIDLLCSNGDLPSKLKIGDINTCDLKGVDTKNVEIPSETRRCSVDGNLLWKLVSVLS
                     FSYQTILSKKAFFGVLESYSFLDNQSNWKIYKLLQESIIDIQSKSTYLIDENITKKGT
                     LAIFSIKDSKFYTLGEVYLLGLIISKFLASFASINSFCELKIRCLDSKEILHYPASFG
                     KKALI"
BASE COUNT          435 a          180 c          155 g          487 t
ORIGIN      
        1 tttcttgaca gtttatctag cataaatgaa ggaagttgtg aagagactcc atgtagcccc
       61 atgaaattta taaacaattc tataactgat tgttcgtgtt ctgaaaaaat gattttttct
      121 atatctttat ttggatgttt taaactttta tttgttctta aaaatatatt ctttcttcca
      181 tagtcttttt ctaatttttt tattaattta aaaaaactat atgaagtaag attattcata
      241 ttaaagcttt ttttccaaaa gaagcagggt aatgtaaaat ttcttttgag tcaaggcatc
      301 ttatttttaa ctcacaaaag gagttaatac tagcaaaaga agctaaaaat ttagatataa
      361 tcaatcccaa taaatatacc tcgcctaaag tgtaaaactt cgaatcttta atactaaaaa
      421 tagctaaggt cccttttttt gtgatatttt catctattaa ataagtgctt ttactttgaa
      481 tatcgattat agattcttgc aaaagcttat aaatcttcca atttgattga ttatctaaaa
      541 agctatagct ttccaacaca ccaaaaaaag cttttttgct caatattgtt tgatatgaaa
      601 aagataacac agaaacaagc ttccataata aattaccatc aacactacat cttcttgttt
      661 cgcttggaat ttccacattt ttggtatcga caccttttag atcgcaggta ttaatatcac
      721 ctatttttaa ttttgaaggt aaatctccat tggagcacaa aagatcaata cttatagttt
      781 catccattat ataagaggaa aagaaagaaa tttcgctaaa tacctctcct ttggaattct
      841 ttttagtatt tacgctataa aaatcctttt gattatcttt taaaaattca aagcgttcaa
      901 aacttttata gttttttaat aatcttttgc cgccttcact attatgtgct ttaacctgta
      961 gtgtctgtat gatttcgtaa gctttaggtt ggcttctatc cacaaaaatt ctataactat
     1021 cttttttgtg attatttata agaggttctg cactttttgt aaagatattg ataataggtg
     1081 tcatgcttaa agaaagtaat tcttttctaa aaatacaatt tgcaggaaat ggtttagaga
     1141 atttaaattc aatattaatt gtctttcctt gacaattatt taaaatatcc aaaccattga
     1201 ttcttaaaaa attaaattta tgtggcatga aaaaatattc tcttagtaag gaaaatg
//
LOCUS       DAQSLY010000196         1251 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.197, whole genome shotgun sequence.
ACCESSION   DAQSLY010000196 DAQSLY010000000
VERSION     DAQSLY010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.197"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            51..497
                     /gene="tssJ"
                     /locus_tag="R2H98_001778"
     CDS             51..497
                     /gene="tssJ"
                     /locus_tag="R2H98_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system lipoprotein TssJ"
                     /protein_id="HEE9024630.1"
                     /translation="MFCKKSLFFLLPLFFCACSSVVSVKINNVENSNLNNRHDDVPVT
                     AIVYQLKDIKKFEEASDIDLATREEGVLGKDKLDSIKTQIAPKDNIIAVKVDEEEVPY
                     VGILVLFANNTKKTTKIWAKTEDANGFGKNKYLKFEISKEGIKRIK"
     gene            507..>1251
                     /gene="tssK"
                     /locus_tag="R2H98_001779"
     CDS             507..>1251
                     /gene="tssK"
                     /locus_tag="R2H98_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEE9024631.1"
                     /translation="MANKLKVAWFDGLNIGQTHFEQQERFFNRNIDLKTINIYSNLYG
                     IIDLEFSQEMLLQGKIALSKISGIAQDGSIFNAPEQDLLPEPIEINYESLIDSVVVLK
                     IPIGVTDIADLSLRNTFPNSKFICLRNSIALRNYDDSKSNVMDKIEDEYELENLTFTQ
                     EKKDLLLASLRLKLGILGNSTPDELELPIAKIKNIDINKKIELESDFIPTCLNISKIS
                     TIRSFLEEIIFSINQHKKVLSNVFKGIDQT"
BASE COUNT          490 a          144 c          200 g          417 t
ORIGIN      
        1 caattaatca taaattatat attctaagat agaaaggata ctttagtttc atgttttgta
       61 aaaaaagctt atttttttta ttgccattat tcttttgcgc ttgctcaagt gttgttagcg
      121 ttaagataaa taatgtagag aattccaatc ttaataatag acatgatgat gttcctgtta
      181 cggctattgt atatcaactt aaggatatta aaaaatttga agaagcaagt gatatagatt
      241 tggctactag agaagagggg gtactaggca aggataaact tgattctatt aaaacgcaaa
      301 ttgcacctaa agacaatatt atcgcggtta aagtagatga agaagaggtt ccttatgtag
      361 gcattcttgt attatttgca aataatacaa aaaaaacaac aaaaatatgg gcaaagaccg
      421 aagatgcaaa tgggtttggg aagaataagt atttaaaatt tgaaatatcc aaagaaggta
      481 tcaaaagaat taaataggaa taatatatgg caaataaatt aaaagttgct tggtttgatg
      541 gacttaatat tggacaaacc cattttgagc agcaagaaag attttttaat agaaatatag
      601 atcttaaaac tataaatata tatagtaatt tatatggaat aatagacttg gaattttctc
      661 aagagatgtt attgcaagga aaaattgcac tttctaaaat ttcaggtatc gcacaagatg
      721 gaagcatttt taatgcacct gagcaagatt tgttgcctga gcctattgaa atcaattatg
      781 aatctttaat tgattcagtt gtggtattaa aaattcctat cggagttact gatattgctg
      841 atttatcttt aagaaatact tttccaaatt caaagtttat atgtcttaga aatagtattg
      901 ctttaagaaa ttatgatgat tcaaaatcta atgtaatgga caaaattgaa gatgagtacg
      961 aacttgaaaa tctgactttt acacaagaga aaaaagattt acttcttgct agtttaagat
     1021 taaaacttgg cattttaggt aattcaactc ctgatgaact tgaattacca attgcaaaaa
     1081 ttaaaaatat tgatatcaat aaaaaaattg aattagaaag tgattttata cccacttgct
     1141 taaatatcag caaaatatct accataagat cctttttgga agaaattatt ttttcaatca
     1201 atcaacataa aaaagttcta tctaatgttt ttaaaggaat cgatcaaaca a
//
LOCUS       DAQSLY010000197         1237 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.198, whole genome shotgun sequence.
ACCESSION   DAQSLY010000197 DAQSLY010000000
VERSION     DAQSLY010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1237
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.198"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..237
                     /locus_tag="R2H98_001780"
     CDS             <1..237
                     /locus_tag="R2H98_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEE9024632.1"
                     /translation="FATPRTPLDDAKGSRNKKLLKDAGAMTSNEIRKKYNLPAYDDSH
                     CEIDGKDDMDLLGKYRNECAKLLNDAIKKAKESE"
     gene            415..747
                     /locus_tag="R2H98_001781"
     CDS             415..747
                     /locus_tag="R2H98_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024633.1"
                     /translation="MLSYEYKNLVENGNLKVDAKYKVTLPPNLIAVLEYDKSEFNGVN
                     LRNFINDLEFELEHIEMELYDDPADFEGGDYYNEDSNCDEDYTVEDWVEDQVSDIKDF
                     LYALKDFK"
     gene            744..>1237
                     /locus_tag="R2H98_001782"
     CDS             744..>1237
                     /locus_tag="R2H98_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024634.1"
                     /translation="MKQTLSSNRVSFYLFSTKTFSDEKYLNAWSLKGERLNAKDWFEF
                     KQANKDKFYNKHLENTLKAMQEFKAYFSVDQFEGINLHGDDEWLDFLPSNYTQFYNRL
                     CKDKSKYILHRYYQKNDLTEIGMLKNLSPNFPFWDEKGENFSQNQIDIFIEKDNLAPC
                     FNKY"
BASE COUNT          501 a          121 c          204 g          411 t
ORIGIN      
        1 tttgctaccc caagaactcc tttagatgat gcaaaaggat ctagaaataa aaagctttta
       61 aaagatgcag gagcaatgac ttcaaatgaa attagaaaaa aatataattt accagcatat
      121 gatgattctc attgtgaaat tgatggaaaa gatgatatgg atttattagg taaatatcgc
      181 aatgaatgtg ccaaactttt aaacgatgct ataaaaaagg ctaaagaaag tgaatgaggg
      241 aatagaaatt cactttgcta aaataaatta taaggaaaga taatgaaaaa taaaaaatta
      301 ttggatgatg aatatataca agaagtgttt aaatactatc ttaaaaatga taattattta
      361 aaagatgctt tatatggttt aaaaaaatac gaacgaagag cttttataag tagcatttta
      421 agctatgaat ataaaaattt agtagaaaat ggtaatttaa aagttgatgc aaaatataaa
      481 gttaccttgc cgcctaatct tattgctgtt ttagaatatg ataaaagtga atttaatggc
      541 gtaaatcttc gaaattttat aaatgatttg gaatttgaat tagaacatat agaaatggaa
      601 ctttatgacg atcctgctga ctttgaaggg ggagattatt ataatgaaga tagcaattgt
      661 gatgaagatt atacagtaga agattgggta gaagatcaag taagtgatat taaagacttt
      721 ttatatgctt taaaagattt taaatgaaac aaacattaag ctctaatcga gtaagctttt
      781 atcttttttc tactaaaact tttagtgatg aaaaatatct taatgcttgg agcttaaaag
      841 gcgagcgttt aaatgccaaa gattggtttg aatttaaaca agccaataaa gacaaatttt
      901 ataataagca tttagaaaat accttaaaag ctatgcaaga gtttaaagct tattttagtg
      961 ttgatcaatt tgaaggcata aatctacatg gtgatgatga atggcttgat tttttgcctt
     1021 caaattatac tcaattttat aatcgtttat gtaaggataa aagtaaatat attttacatc
     1081 gatattatca aaaaaatgat ttgacagaga ttggtatgct taaaaatctt tctcctaatt
     1141 ttcctttttg ggatgaaaaa ggagaaaatt tttctcaaaa tcaaattgat atttttatag
     1201 aaaaagataa tttagcaccc tgctttaata aatatga
//
LOCUS       DAQSLY010000198         1233 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.199, whole genome shotgun sequence.
ACCESSION   DAQSLY010000198 DAQSLY010000000
VERSION     DAQSLY010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1233
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.199"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..738)
                     /gene="yibB"
                     /locus_tag="R2H98_001783"
     CDS             complement(<1..738)
                     /gene="yibB"
                     /locus_tag="R2H98_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YibB"
                     /protein_id="HEE9024635.1"
                     /translation="MIDNEITIVTAFYDIGRKDIKNFERDNDKYLSYFEFLAGIKNKM
                     IIYTQENIKEKILDTRKKHNLEDKTIIITKELQEFDEQGYKKIIDTFRNYDQSINRKN
                     PNNIECISPMYCYLMYLKPFFVCDAIQRGLTDKNIMWLDFGFNHGGNFFVDKDQFNFY
                     LQKQNSIDENKINLFSIKNDDKQTLANIYFSMETFLMGGIIFAKSKNWLLFKHHMQKC
                     IKYFTSFGIIDDDQIMLLWCARNYRKNY"
     gene            complement(735..>1233)
                     /locus_tag="R2H98_001784"
     CDS             complement(735..>1233)
                     /locus_tag="R2H98_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEE9024636.1"
                     /translation="WLDAGMFLSGEIQKEILDQDFFIFHRSTKKPQDYKNWINFNYNF
                     FSWDEKFKVNIVNGFILSNKNNEIMKIMQDILINYWKYENKLVYYFMFQILFDALKKK
                     YLNLNLYITNDTDIHLLQYHAKDKYSDKLWNDIKNKTSIHSLKIFKKIRKHSMIDKIL
                     FKDTI"
BASE COUNT          425 a          159 c          109 g          540 t
ORIGIN      
        1 ataatttttt cgataatttc tagcacacca taaaagcatt atttgatcgt catcaattat
       61 tccaaatgag gtaaaatatt ttatacattt ttgcatatga tgtttaaata agagccaatt
      121 ttttgatttt gcgaatataa taccacccat taaaaatgtt tccatggaaa agtaaatgtt
      181 tgctaaagtt tgtttatcat cattttttat tgaaaagaga ttaattttat tttcatctat
      241 actattttgt ttttgtagat aaaagttaaa ttgatcttta tctacgaaaa aatttcctcc
      301 atgattaaaa ccaaaatcaa gccacattat attcttatca gtcaaacctc tttgtatagc
      361 atcacataca aaaaaaggtt ttaaatacat aaggtagcaa tacataggag aaatacattc
      421 tatattgttt ggattttttc tatttatact ttgatcatag tttctaaaag tatctattat
      481 ttttttataa ccttgctcat caaattcttg taattctttg gttattatta tggttttgtc
      541 ttctaaatta tgtttttttc ttgtatctaa aattttttcc tttatatttt cttgggtgta
      601 tataatcatt ttatttttga tacctgctaa aaattcaaaa taagataaat atttatcatt
      661 atctctttca aaatttttaa tatcttttct acctatatca taaaaagctg ttactatcgt
      721 aatttcatta tcgatcatat tgtatcctta aataatattt tatctatcat ggaatgtttt
      781 ctaatttttt taaaaatttt taatgaatgt atgcttgttt tattttttat atcattccat
      841 aatttatcac tatatttatc ttttgcatga tattgcaaga gatgaatatc tgtatcattt
      901 gttatgtata aatttaaatt taaatacttt ttctttaagg cgtcaaacaa tatttgaaac
      961 ataaaataat atactaattt attctcatat ttccaataat taatcaatat atcttgcatt
     1021 atcttcataa tctcattatt tttatttgat aatataaaac catttacaat attaacttta
     1081 aatttctcat cccaagaaaa aaaattataa ttaaaattta tccaattttt gtaatcttgc
     1141 ggtttttttg tagatctatg aaaaataaaa aaatcttgat ctaaaatttc tttttgaatt
     1201 tctccgctta aaaacatacc agcgtctagc caa
//
LOCUS       DAQSLY010000199         1220 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.200, whole genome shotgun sequence.
ACCESSION   DAQSLY010000199 DAQSLY010000000
VERSION     DAQSLY010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1220)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1220)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1220
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.200"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..333)
                     /locus_tag="R2H98_001785"
     CDS             complement(<1..333)
                     /locus_tag="R2H98_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002891875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FdtA/QdtA family cupin domain-containing
                     protein"
                     /protein_id="HEE9024637.1"
                     /translation="MNYTILKFKTINSKNSILNVHQKDVNCPFEIKRIFYIYDFLNDS
                     IRGDHANLNSEFIFIALNGSCEILIDDGQTKQKIILNDKTKGLYIDKMIWKQMYNFSK
                     DCILLVLTN"
     gene            complement(336..>1220)
                     /locus_tag="R2H98_001786"
     CDS             complement(336..>1220)
                     /locus_tag="R2H98_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HEE9024638.1"
                     /translation="NPNYVFIQGDISDVFLVNEIFSKYKINAVINFAAESHVDNSIKN
                     PDIFIKTNIYGTWNLLNSAYKTWFLEPFLKKDEFKQSFFYQISTDEVYGSLGENGKFT
                     EDNAYAPNSPYSASKASADMLVRSYHHTYGLNAVISNCSNNYGPFQHDEKLIPTIIRN
                     ALNNAQIPIYGDGKNIRDWLYVKDHCVAIESIYKYAFEKIKENNSFFDVFNIGTNEEW
                     QNIDIANKICSYLDNVLPKNTSYKEQITFVKDRAGHDRRYAIDPTKLQRVIGWKAQEN
                     FNSGLDKTIQWYIKKYKG"
BASE COUNT          406 a          178 c          128 g          508 t
ORIGIN      
        1 atttgttaat accaataaaa tacaatcttt agaaaaatta tacatttgtt tccatatcat
       61 tttatctata tataagcctt tggttttatc atttaatatt attttttgtt ttgtttgtcc
      121 atcgtctatt aaaatttcgc aacttccatt taaagctata aaaataaatt ctgaatttaa
      181 attagcatga tcacctctta ttgaatcatt taaaaaatca tatatataaa aaattctttt
      241 aatttcaaat ggacaattta catctttttg atggacattt aatattgaat ttttactatt
      301 tatggttttg aattttaata ttgtatagtt caaatttaac ccttgtattt tttaatatac
      361 cattgtatag ttttatctaa accgctatta aaattttctt gtgctttcca acctataacc
      421 ctctgtaatt ttgtcggatc tatggcatat cttctatcat gacctgctct atcctttaca
      481 aaagtaattt gctctttata agaagtattt tttggcaata cattatctaa ataagaacaa
      541 attttattag ctatgtctat attttgccat tcttcatttg ttcctatatt aaatacatca
      601 aaaaagctat tattttcttt tatcttttca aaagcatatt tataaatact ttctatagcc
      661 acgcaatgat cttttacata tagccaatct cttatattct taccatctcc atatattgga
      721 atttgagcgt tatttaatgc atttcttatt atggtaggta taagtttttc atcatgctga
      781 aaaggtccgt aattgttaga acaattagaa ataacagcat ttaatccata agtatgatga
      841 taacttctaa caagcatatc agcacttgct tttgaagctg aataagggga atttggagca
      901 taagcgttat cttctgtaaa ttttccattt tctcccaaag atccataaac ttcatctgta
      961 cttatttgat aaaagaaact ttgtttaaat tcgtcttttt taagaaaagg ttcgagaaac
     1021 caagttttat aagctgagtt taataaattc caagttccgt atatatttgt ttttataaaa
     1081 atatctggat tttttataga attatctaca tgtgattctg ctgcaaaatt tataaccgca
     1141 tttattttat atttgctgaa aatttcatta accaaaaaaa catcacttat atctccttga
     1201 ataaatacat aattaggatt
//
LOCUS       DAQSLY010000200         1217 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.201, whole genome shotgun sequence.
ACCESSION   DAQSLY010000200 DAQSLY010000000
VERSION     DAQSLY010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.201"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..348
                     /locus_tag="R2H98_001787"
     CDS             <1..348
                     /locus_tag="R2H98_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002909437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEE9024639.1"
                     /translation="FLHSKKLQELHEKYNYKIVFSPHPQIRPYLEGFNLPNYIIIPSV
                     EMSMQKLFCESSLMITDYSSVAFEMAVLKKPVIYYQFDKDEFFAKHTVQKKYFDYKKD
                     KFGKVFTNKVNIC"
     gene            389..>1217
                     /locus_tag="R2H98_001788"
     CDS             389..>1217
                     /locus_tag="R2H98_001788"
                     /inference="COORDINATES: protein motif:HMM:NF013652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HEE9024640.1"
                     /translation="MFHIVFGCNESYVKYLSVLITSIMKNINSQKTFLDVYKEANILP
                     KIDINSLESREGFIFHILIDSIQEKTSIKLDQMIKHLSRENDYPAEIKLHIMDAELFK
                     EMDVPIWVKHYATYFRLYLGSILPENCEKCLYLDVDMLVFSDLRELFCLDLQDYIIAA
                     SPDIKQWPGSLFVGKSKKDNVRDLIIEKGPLYFNAGFMLINLKQWRLESLEKRMVNVA
                     NSYTFEVGDQDILNYVINKKVIILPCKWNFIAGHFILDRKGIFNDFKGEGNQPYWYYT
                     "
BASE COUNT          444 a          106 c          201 g          466 t
ORIGIN      
        1 tttttacaca gtaaaaaatt acaagaatta catgaaaaat ataattacaa aatagttttt
       61 agtcctcatc cacaaattag accttatttg gaaggtttta atttaccaaa ttatattata
      121 ataccttctg ttgaaatgag tatgcaaaag cttttttgtg aatcatcttt aatgataacg
      181 gattattcaa gtgtggcttt tgagatggct gttttaaaaa agcccgtgat ttattatcaa
      241 tttgataaag atgaattttt tgcaaagcat actgtgcaaa aaaaatattt tgattataag
      301 aaagataagt ttgggaaagt ttttactaat aaggttaata tttgttaatt tttagagttt
      361 taaatatata aattgtgagg gtttatttat gtttcatatt gtttttggtt gtaatgaatc
      421 ttatgtgaaa tatttgtcag ttttaattac aagtatcatg aaaaatatta atagtcaaaa
      481 aacttttctt gatgtttata aagaagctaa tatattgcca aagattgata taaattctct
      541 cgagtcaaga gaagggttta tatttcatat tttaattgat tctatacaag aaaaaacttc
      601 tataaagctt gatcaaatga ttaaacattt aagtagagaa aatgattatc ctgcggaaat
      661 taaattacac ataatggatg ctgagttgtt taaagagatg gatgttccta tttgggtaaa
      721 gcattatgct acctatttta ggttatattt agggagtatt ttgcctgaaa attgtgaaaa
      781 atgtttgtac ttagatgtag atatgcttgt tttttctgat ttgagagaat tattttgttt
      841 ggatttacaa gattatatta ttgcagcatc tccagatata aaacaatggc caggaagttt
      901 atttgtaggg aaatcaaaaa aagataatgt tagagatttg attattgaaa aaggtcctct
      961 ttattttaat gctggtttta tgttaatcaa tttaaaacag tggagattag aatctttaga
     1021 aaaaagaatg gtaaatgttg caaattcata cacatttgaa gttggagatc aggatatttt
     1081 aaattatgtt attaataaaa aagtaataat acttccttgt aaatggaatt ttatagctgg
     1141 tcattttatt ttagatagaa aaggtatttt taatgatttt aaaggagaag gaaatcagcc
     1201 atattggtat tatacaa
//
LOCUS       DAQSLY010000201         1203 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.202, whole genome shotgun sequence.
ACCESSION   DAQSLY010000201 DAQSLY010000000
VERSION     DAQSLY010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.202"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>1203
                     /locus_tag="R2H98_001789"
     CDS             <1..>1203
                     /locus_tag="R2H98_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024641.1"
                     /translation="FENEKLDNTLLVNSSLNNFDTTLKKAINLNISKLNHFFYAEYPD
                     LNSSMLVEMILDKKNTDQINTTKMGKNYLLITNPPQLNNAGLCEDLYQKKLGAIIKNR
                     PKALTKNEKLALKGDFPSKRDYGSYFIERDVKKEDDYVLQLCPFVKLDGQIYQKYKGY
                     FNFYNQTYSWMKLYLLEHINERLEYEKVKQDFAYIDSFFKLPKELEEISEKEKEKVKE
                     YVELFNNYLDNINSRYDQTQSNLNSKPLMFKIYENVDFKKYSPLTVILLTLTLCVLQK
                     DLAFTQEYSLGYKLFQAYTGRDKKNISLNYQRIKIPNYFNEYILFIPDDIYFYDNDKK
                     IYIFLSKELNKNKKEDEVIYLDELAKAMFENDFEEEDQTYVNFLKTLNESFDEEIEFE
                     ENIQTDKTL"
BASE COUNT          504 a          135 c          157 g          407 t
ORIGIN      
        1 tttgaaaatg aaaagttaga taatacactt ttagtgaatt ctagtttaaa taattttgat
       61 acaacattaa aaaaagcaat caatttaaat atctctaaac tcaatcattt cttttatgca
      121 gaatatcctg atttaaattc ttccatgcta gtagaaatga tattagataa aaaaaatact
      181 gatcaaatca atacaaccaa aatgggtaaa aattatttgc ttattactaa tccaccacag
      241 cttaacaatg caggactttg tgaggacttg tatcaaaaaa aattaggagc aataataaaa
      301 aatcgcccca aagctcttac aaaaaatgaa aaacttgcat taaaaggcga ttttcctagc
      361 aaaagagatt atggttctta ttttatagaa agagatgtta aaaaagaaga tgattatgta
      421 ttgcaacttt gtccttttgt gaaacttgat ggacagattt atcaaaaata taagggatat
      481 tttaattttt ataatcaaac atattcttgg atgaaacttt atttattaga acatataaac
      541 gaacgattag aatatgaaaa agttaagcaa gattttgctt atattgatag cttttttaaa
      601 ttgcctaaag aacttgaaga aattagcgaa aaagaaaaag aaaaagtaaa agaatatgtc
      661 gagcttttta ataattattt agataatatc aattctcgct atgaccaaac acaatccaat
      721 cttaactcaa aaccattaat gtttaaaata tatgaaaatg tagattttaa gaaatactca
      781 cctttaacgg ttattttatt gactttgact ttgtgtgttt tacaaaaaga cttagctttt
      841 acacaagaat attctttggg atataaattg tttcaggcat atactgggcg tgataaaaaa
      901 aatatttcac ttaattacca aaggattaaa ataccaaatt attttaatga gtatatctta
      961 tttatccctg atgatattta tttttatgat aatgataaaa aaatttatat ctttttatct
     1021 aaagaattaa ataaaaataa aaaagaagat gaagttattt atttagatga attagccaaa
     1081 gctatgtttg aaaatgattt tgaagaagaa gatcaaactt atgtaaattt tttaaaaacc
     1141 ttaaatgaaa gctttgatga ggagattgaa tttgaagaaa atatacaaac agacaaaact
     1201 ctt
//
LOCUS       DAQSLY010000202         1190 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.203, whole genome shotgun sequence.
ACCESSION   DAQSLY010000202 DAQSLY010000000
VERSION     DAQSLY010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1190)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.203"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..704
                     /gene="trmA"
                     /locus_tag="R2H98_001790"
     CDS             <1..704
                     /gene="trmA"
                     /locus_tag="R2H98_001790"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEE9024642.1"
                     /translation="EDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQTLNIQGRK
                     IFYEFNNDCFIQPNTTINEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKI
                     LATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNF
                     SHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRAEEFALFDQF
                     VNTPHLECGVFLSKV"
     gene            complement(691..1107)
                     /locus_tag="R2H98_001791"
     CDS             complement(691..1107)
                     /locus_tag="R2H98_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEE9024643.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
BASE COUNT          490 a          175 c          146 g          379 t
ORIGIN      
        1 tagaagatat aaagtcaaat ttagaaaatt taagcaataa tcttcatatc aacctcatag
       61 caagaagtaa aggcaaaaag cttattttta aaacagaaaa tctaagacaa actttaaata
      121 ttcaaggtag aaaaatattt tatgaattta acaacgattg ttttattcaa cctaacacta
      181 ctataaatga aaaaatgatt acttgggtgt gtgaaatttt aaacactcaa aaaagaatgg
      241 atttgcttga gctttactgt ggatatggaa attttacttt agctttagcg ccattctttt
      301 ttaaaatttt agccactgaa atttcaaaaa gcaatattaa ttttgcttta aaaaattgcg
      361 agcttaacaa tacaacaaat atccactttg caagactttc aagcgaagaa ttaagtcttg
      421 ctatcaaaaa agaaagagaa ttttttcgtt taaaagatat tcgattagat gattttaatt
      481 tctctcatgt tttagttgat ccaccccgtg caggacttga taaaagcgta attgacttaa
      541 taaaaaaata tgaaaatatt atttatattt cttgcaatcc tatcacttta aaagaaaatt
      601 taaaagaatt aagcctaaca catagagcgg aagagtttgc tctgtttgat caatttgtca
      661 atactccaca tcttgaatgt ggagtatttc ttagcaaggt ataaaaaaat aattcattaa
      721 tttagccagt attactatcg cgatacaaag cacaaataca aaagggtgga taaaaacacc
      781 gagtggattt ttcttcttta atataaaatg acaaaataaa gaaaaaacaa ctaaagataa
      841 aattccaaaa gccaaaataa tttttacagc aaaaagtaaa tttaaaggtt taaaatgaaa
      901 acccgccaaa gcacctccgc ttaaaaaaag caaaagaacc acaaaaggca ttattttaac
      961 cccagtagca ctaaaaagac ttttgtcaaa attaggattt ttctttttaa ctacacccaa
     1021 aacaaataca tcaacaaaca aataacctat aaacaaaata gcacaaagaa gatggattgt
     1081 taaagtatat ggataaaatt cttccatttt tccctcctta ttaaacttcg gaatttgcta
     1141 tattataaca cttttttcat tttttaaatt cactttagtt aattttttaa
//
LOCUS       DAQSLY010000203         1174 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.204, whole genome shotgun sequence.
ACCESSION   DAQSLY010000203 DAQSLY010000000
VERSION     DAQSLY010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.204"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..364
                     /locus_tag="R2H98_001792"
     CDS             <1..364
                     /locus_tag="R2H98_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024644.1"
                     /translation="LIQDPSNKNLLEQLKNKNTNLYTIFLLKENINDLNNTAFQNELK
                     QIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNKIEEANVLLSQIKEN
                     SSLNQIAKNLKHYQGITQ"
     gene            361..>1174
                     /locus_tag="R2H98_001793"
     CDS             361..>1174
                     /locus_tag="R2H98_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024645.1"
                     /translation="MKKIFLTLFCLIFLCARGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFA"
BASE COUNT          472 a          172 c          144 g          386 t
ORIGIN      
        1 tctaatacaa gatcctagca ataaaaatct tttagaacaa cttaaaaata aaaatactaa
       61 tctttacact atctttttac taaaagaaaa tattaatgat cttaataata cagcctttca
      121 aaatgaacta aaacaaattt ataataatgc tcaaacaaac actttactta aaaatattat
      181 tgcattatct ttaggagata aatcaatatt tttaaaaaat tatgataaat tattagaagc
      241 ttacaaactt ttagagcaaa ataaaatcga agaagctaat gttttacttt ctcagataaa
      301 agaaaattca agtttaaatc aaatagctaa aaacctcaaa cattatcaag gcattacaca
      361 atgaaaaaaa tatttttaac actattttgt ttaatatttc tatgtgctcg tggcaccaaa
      421 agacaatatt ttgaaccaaa acaaaccgat ggagatttaa gtcataatag caatttaaaa
      481 agtaaaatcg ttgattggaa tctagtttct gcaaaactta gcaataatac agctatctta
      541 aaaaataata tctccataga caagtttaaa cttcctaaaa attatatgct tctagcttat
      601 caagatgggg aatattttac tgcagataat aatggaaatt taaaaatttt tgacaattct
      661 tataatgaaa tttataattt tcaatttgac gctagtgttg taggagtagc ttctaatgga
      721 gatgatttag cccttgtact tgcaaacaat actatagttc ttgcaaatcg ttctttgggt
      781 attaaattta gtcaaaccct aacctcagct ccagctcaag acagtcgtac cgctaatcct
      841 atatttttag acaatatcat cgtatatcca acgctagatg gcaaaatttt aattctttca
      901 agaaacaatc ttcaagtcat taaagatgtg gttatttcag cagaaaattt tttcaacaat
      961 gtaatccatc taagtgtaat cggagataaa cttatagcag caacagctaa aaaaatcatt
     1021 gttgtaagcc ctgctagaac tctttatctt gacgctgaca taaaagatgt tgcacttagt
     1081 gatgatggta tttttatact agaaaaagat ggcactatta ttaaaactga ttataactta
     1141 agaaaaattg cagaaaaaaa atttgaattt gcta
//
LOCUS       DAQSLY010000204         1117 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.205, whole genome shotgun sequence.
ACCESSION   DAQSLY010000204 DAQSLY010000000
VERSION     DAQSLY010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.205"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>1117
                     /locus_tag="R2H98_001794"
     CDS             <1..>1117
                     /locus_tag="R2H98_001794"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024646.1"
                     /translation="VLIGASNSMLFNGLRAGLNQDNVELTNLSLGGASIIFSLYCTLR
                     EKNKDIVNKADLVILESNIIDMIHGIDLYGKIHLILRNIFLTYNELSKLNKKFLVLLL
                     PLLEKHSDYNVVETINNAHRMCCNQYGFNCVDVQSVYLKNNVMDFYMTMMPDARHQLQ
                     RIMYEFGKNIANENFSLFKFSLPSSIDLDFKICSPKNDFKIENKMKEFIVSDLFHNEY
                     CYRITEIDKYLFPTFLIGYKILATHSWTHGKKGLKTWKQYENTLSSIMIRNNQGKFIC
                     GTSSHYNSFTCIYDNILIDNHTIISLSDVNNHVDYYDLVNLMLYKDEGKIQVAVDDIK
                     ETVIKQEYNFSHLFPDVVFIKEILEEYLNSTSNISIQ"
BASE COUNT          415 a          113 c          165 g          424 t
ORIGIN      
        1 ttgtactgat tggtgctagt aactcaatgc tttttaatgg attgagggct ggattaaatc
       61 aagataatgt tgaattaacg aatttatctt tgggtggagc atctataata ttttctttat
      121 attgcacctt aagagaaaaa aacaaagata tagtaaataa ggcagattta gttattttgg
      181 aatcaaatat tatagatatg atacatggta tagatctcta tggaaaaatt cacttaatac
      241 tcagaaatat ttttttaaca tacaatgaat tatctaaatt aaataaaaaa tttttagttt
      301 tattgcttcc acttttagaa aaacatagtg attataatgt agttgaaact attaacaatg
      361 cccatagaat gtgttgcaac caatatggat ttaattgtgt tgatgttcaa tcggtttatt
      421 tgaagaataa tgttatggat ttttatatga ccatgatgcc tgatgctaga catcaattac
      481 aaagaattat gtatgaattt ggtaaaaata tagcaaatga aaatttttct ttatttaaat
      541 tttctcttcc ttcatccata gatttagatt ttaaaatttg ctctcctaaa aatgatttta
      601 aaatagaaaa taagatgaaa gaatttattg tatctgattt atttcataat gagtattgtt
      661 atagaattac agaaatagat aaatatcttt ttcctacttt tttaataggt tataagatat
      721 tggctactca ttcttggact catggaaaaa aaggtttaaa aacatggaaa caatatgaaa
      781 ataccttatc tagtataatg atacggaata atcaagggaa atttatttgt ggcacatctt
      841 cacattataa tagttttact tgtatttatg ataatatatt aattgataac catacaataa
      901 tttctttgag tgatgtaaat aaccatgttg attattacga cttggttaac ttaatgcttt
      961 ataaagatga gggaaaaata caagtagctg tagatgatat taaggaaaca gtaattaagc
     1021 aagaatataa tttttctcat ttatttccag atgtggtttt tattaaggaa attttggagg
     1081 aatatttaaa ttctacatct aatatttcga ttcagat
//
LOCUS       DAQSLY010000205         1116 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.206, whole genome shotgun sequence.
ACCESSION   DAQSLY010000205 DAQSLY010000000
VERSION     DAQSLY010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.206"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..213)
                     /locus_tag="R2H98_001795"
     CDS             complement(<1..213)
                     /locus_tag="R2H98_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEE9024647.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDA"
     gene            complement(310..>1116)
                     /locus_tag="R2H98_001796"
     CDS             complement(310..>1116)
                     /locus_tag="R2H98_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024648.1"
                     /translation="FGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSK
                     GFDFGEKFSGEENIDKLKVTAYAGKGEVLTHITWNDYRIKLEYLFACNDQKAKFYNAT
                     EGGARINFTEELSFKECCEKLLTKEKPQFELPKSLTKNRSDKLLVKFKEKIQKDQDNA
                     KRFLDDALALKQILENILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDETLRGAF
                     AYRGKMIADVLKLHIQDKTHFITAYIKAYDEWLLYFIEKLGQKYKSLSKV"
BASE COUNT          362 a          192 c          144 g          418 t
ORIGIN      
        1 agcatcgtta ccattagata tagcttgacc taaagtatta gcttgagatc ttaaactatc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctacttaaa gaagcatcca aacttttact atttaaatca gcgtttgctt tagcatttaa
      181 agctgcaaca ttggtgttaa tacgaaatcc cattttaaat ccttttaaaa aatttcaagc
      241 ccatccatga acttgttaaa tgctatatcg tgcaatcaaa aaaatatttt atactttagt
      301 aataaaattt catacttttg acaaagactt gtatttttgc cctaactttt ctataaaata
      361 aagcaaccat tcatcataag ctttgatata agctgtgatg aaatgcgttt tatcttgtat
      421 atgaagtttc aatacatcag caatcatttt tccacgataa gcaaaggctc ctcttaaagt
      481 ttcatcctgt ataaactcat cttcatctaa agagtgattg aaattttcta tgttttgata
      541 tactttttct aaaaattcca aaggtaaaat aaaatcttta ctgagtatat tttctaaaat
      601 ttgttttaaa gctaaagcat catctaaaaa tcttttagca ttatcttgat ctttttgtat
      661 tttttctttg aatttaacta ggagtttatc acttctattt ttagttaaac tttttggaag
      721 ttcaaattga ggtttttctt ttgtaaggag tttttcacaa cattctttaa aggaaagttc
      781 ttcagtgaaa ttaatccttg ctccaccttc agtagcattg taaaatttag ccttttgatc
      841 attgcaagca aaaagatatt caagttttat acgataatca ttccaggtta tatgcgttaa
      901 aacttcacct ttgcctgcat aggcggtgac tttaagttta tctatatttt cttcaccact
      961 aaatttctct ccaaaatcaa aaccttttga gtgtgaattt ccttcttcat caaaggctaa
     1021 atcttgtcct atcatgatga tatttttaaa tcctaaagcc aaagctaagg tataagaaaa
     1081 atgacttaca tgagtgcctg tatcgatata gccaaa
//
LOCUS       DAQSLY010000206         1103 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.207, whole genome shotgun sequence.
ACCESSION   DAQSLY010000206 DAQSLY010000000
VERSION     DAQSLY010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.207"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..553
                     /locus_tag="R2H98_001797"
     CDS             <1..553
                     /locus_tag="R2H98_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEE9024649.1"
                     /translation="IPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKLEQ
                     AKMFTKIAALCLDNKYALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYPSE
                     NGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKFED
                     GKEIKFIKSQGISVENESLKIIF"
     gene            619..1035
                     /locus_tag="R2H98_001798"
     CDS             619..1035
                     /locus_tag="R2H98_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEE9024650.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          421 a          121 c          186 g          375 t
ORIGIN      
        1 tatacctaat cacgaagcag aatactatgc aaattttaat tttatgtgga aagatgcctt
       61 agagcaaact aaaaaacata aagctcatct tcttatagcg gtgctaagtc aagatcaaag
      121 caaattagaa caagctaaaa tgtttacgaa aattgcagct ttatgtttgg ataataaata
      181 tgctttaggt ttttatacag gtgcagttgt tttagagccc agtttttata tagaaaatgc
      241 aaaaatgtta gatgataatc gcttgccggt atataattgg atatatgtta gtgtttatcc
      301 tagtgaaaat ggagttaatg cttatactta tgggcttaga aattttgata aattagaact
      361 tgaagtttgt gatttaaaca tagaagaaaa agaacttttc ttttgtattt atgatattgt
      421 tttgcatatt ttaacttatg atattaatct aaaagataaa gatattttaa aatttgaaga
      481 tggaaaagaa ataaaattta taaaaagtca aggtataagt gttgagaatg aaagcttgaa
      541 aattattttt taagtttcac attcacttca cagttttgag ttaaactttc gccaaccaag
      601 acaaaaaaag gagaaattat gaaagcaaaa ctaactttac ttgctttgtt gggtactacg
      661 gtgcttttag ctaaagatat ggttgttcct gctagcgaac ttccaaataa tgccaaagaa
      721 tttatttcta aaaattttaa aaccgctcaa attggtttgg tgaaaaaaga tatagattct
      781 tatgatgtga ttttaaatga tggaactgaa attgatttta tgatcaatgg agagtggaaa
      841 gaagttgatg gaaaatataa ggctttgcca catactatct tacctaatgt tatgaaaaaa
      901 gtgagtgcaa ctcaaccaaa tgctcaaatt cttgaagtag ataaagaaat taatggttat
      961 aaatttaagt ttaataacaa tatggaagtt tatacagata tgcaaggaaa tatcctaggt
     1021 caaaaattag attaattttt gaaaatttaa ctcccttaga aaatttgatg caaaaatttg
     1081 gaagcatagt cttccaaatt ttt
//
LOCUS       DAQSLY010000207         1095 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.208, whole genome shotgun sequence.
ACCESSION   DAQSLY010000207 DAQSLY010000000
VERSION     DAQSLY010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.208"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            56..>1095
                     /locus_tag="R2H98_001799"
     CDS             56..>1095
                     /locus_tag="R2H98_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEE9024651.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLKNIETIC
                     TWLNSNEFRDRYLSTKHPYPPLINPNFIEIDSSRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTIAQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGLLKHSWGRDWSKVLRNYPPEFNLTYDWRYYINY
                     LTHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINF
                     NFTPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDRTS
                     SIPIILDRKHIN"
BASE COUNT          408 a          174 c          122 g          391 t
ORIGIN      
        1 gacatttaaa tatttatgaa ttatatataa attaaataca attaaaagag gttatatgca
       61 aaatctttta ctctatataa aaaataacct aactccaacc ctagctcaaa ttcttttaca
      121 agctttaaaa aattcgaata atgaaaaatt ttttaccttt gttttgaaaa atattgaaac
      181 aatttgcact tggctcaatt ctaacgaatt tagggataga tatttatcaa caaaacatcc
      241 ttatccacct ttaatcaatc ctaattttat agaaatagat tctagtcgac attgcgcaga
      301 attagcttgg gatttaaatt tacccctacc taaacactat aaatttatct atatttctcc
      361 acatggcgtt ggagcagcag catttttaag ataccttaat caatgttgcg atgtaacttg
      421 ttttgcctcc tgggttttac cacctgatag caaagagaga tattgtatta attacatgtg
      481 tctaaatgat aatacaattg ctcaatatgc tattaatata tcagaaatta atctacctta
      541 ttttgataaa tatctatctt tattagattt taattctaag attatttgcg gagttcgaga
      601 tccaatagga cttttaaagc atagctgggg aagagattgg agtaaagttt taagaaacta
      661 tccccctgaa tttaatctaa cttatgattg gcgttattac atcaactatc ttactcatca
      721 aaatcataaa attaaaatcg atataaatga actacaacaa ggagttttta tcatctctta
      781 tttattaaaa tattttaaca aagacaatgt atactatctt gatatggaag aaatccgcca
      841 atcaaaggcc ttcgatacca tgaatttact tgctataaat tttaatttta ccccccccca
      901 taaagataaa ttagatttat ttaaaattaa agaatttaga ggttatattc gctatctttt
      961 tcctattaca ctttatgcaa attctaaaga tattaataac accttttatc ttaatactcc
     1021 taaaaataat aaaaatttca atattgatag aacttctagc attcccataa ttttagacag
     1081 aaaacatatc aatca
//
LOCUS       DAQSLY010000208         1080 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.209, whole genome shotgun sequence.
ACCESSION   DAQSLY010000208 DAQSLY010000000
VERSION     DAQSLY010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.209"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..489
                     /gene="tssK"
                     /locus_tag="R2H98_001800"
     CDS             <1..489
                     /gene="tssK"
                     /locus_tag="R2H98_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system baseplate subunit TssK"
                     /protein_id="HEE9024652.1"
                     /translation="FLDFIPYKHDNLYNTFLNMMNNLRLLFSKITSPKYFIAKTSING
                     NGFYDFIFDNSGILEESEIYFAIRADVTTEYLLNNFKIQSKIHTQSKIKNIVATQLEG
                     LNVDQVPNVPSSIPYLNGYVYYKLDKRDQLFKDFKNESIISMYLTNNIKNPDIIMWAV
                     FQ"
     gene            486..>1080
                     /gene="icmH"
                     /locus_tag="R2H98_001801"
     CDS             486..>1080
                     /gene="icmH"
                     /locus_tag="R2H98_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IVB secretion system protein IcmH/DotU"
                     /protein_id="HEE9024653.1"
                     /translation="MKEINEEKKALSLLLDSDFDGLKNNKIIDYSLELLLLSYRLSKI
                     SSMDTSSINQLRETLINKILDITAKLSICKEYDEKEIIKFKYCLCVFIDESLMKNELF
                     INFWAHNTLTVRLFDETLGGNNFYDIASSWINNPFKFKDFLEFIYACLILGYKGKYNE
                     TKDRDEKIIHFCNNIATSLKPVYKIEEELAFNKAYKTG"
BASE COUNT          415 a          114 c          153 g          398 t
ORIGIN      
        1 tttttagatt ttattcctta taaacacgat aatctttata atactttttt aaatatgatg
       61 aataatctaa gattgttatt ttctaaaatc acaagcccta aatattttat agctaagacc
      121 agtattaacg gcaatggttt ttatgatttt atttttgata attcgggaat tttagaagaa
      181 agtgaaattt atttcgcaat tcgtgcagat gttactacag aatatctact taataatttt
      241 aaaattcaaa gcaagataca tactcaaagt aaaattaaaa atatagtcgc aactcagctt
      301 gagggcttaa atgtagatca agtacctaat gttccatcta gcattcctta tttaaatggt
      361 tatgtttatt ataaattaga taaaagagat caactgttta aagattttaa aaatgaaagt
      421 atcattagta tgtacttgac caacaatata aaaaaccctg atattataat gtgggcggta
      481 tttcaatgaa agaaataaat gaagaaaaaa aggcattaag cttacttctt gattcagatt
      541 ttgatggttt aaaaaacaat aaaattattg attattcttt ggagttgctt ttgctttctt
      601 atagactttc aaaaataagc tctatggata caagtagtat taatcaactt agagaaacat
      661 tgattaataa aattttagat ataaccgcta aattaagtat atgtaaagaa tatgatgaaa
      721 aagaaattat taaattcaaa tattgtcttt gtgtctttat agatgaaagc ttaatgaaaa
      781 atgaactttt tattaatttt tgggctcaca atactctaac tgtaaggtta tttgatgaaa
      841 ctttaggtgg aaataatttt tatgatattg catcatcttg gattaataac ccttttaagt
      901 ttaaagattt tttggaattt atctatgctt gtttaattct tggttataaa ggaaaatata
      961 atgagactaa ggatagagat gaaaaaataa tccatttttg caataatatt gccacatctt
     1021 taaaaccggt ttataagata gaagaagagt tagcttttaa taaagcatat aaaactggtt
//
LOCUS       DAQSLY010000209         1049 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.210, whole genome shotgun sequence.
ACCESSION   DAQSLY010000209 DAQSLY010000000
VERSION     DAQSLY010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.210"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            25..>1049
                     /gene="pseI"
                     /locus_tag="R2H98_001802"
     CDS             25..>1049
                     /gene="pseI"
                     /locus_tag="R2H98_001802"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEE9024654.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKEAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKDGLWDKRKLYELYQSAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIASLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIKFG
                     DALKQGD"
BASE COUNT          397 a          148 c          199 g          305 t
ORIGIN      
        1 gaaatttacc aaagaaagaa aagtatgcaa ataggaaatt ttaacaccga taaaaaggtt
       61 tttatcatag cagaacttag tgcaaatcac gcaggaagtc ttgagatggc acttcaaagt
      121 ataaaagctg ccaaagaagc aggtgctgat gcgataaaaa ttcaaactta cactccagat
      181 agcatgactc taaatagcaa caaagaagat tttattatta aggatgggct ttgggataaa
      241 agaaaacttt atgagcttta tcaaagtgca aaaacccctt atgaatggca ttctcaaatc
      301 tttgaaaccg cacaaaatga aggcatactt tgtttttcaa gtccttttgc caaagaagat
      361 ttagaatttc taaaacgctt tgatcctata gcctataaaa tcgcttcttt tgaagctaat
      421 gatgaaaatt tcgtgcgttt aatcgccaaa gaaaaaaaac ctactatcgt ttcaacgggc
      481 attgctacag aagaagaact ttttaaaatc tgtgaaattt ttaaagaaga aaaaaatcct
      541 gatttaatct ttttaaaatg cacttcggct tatcctactg ccatagaaga tatgaattta
      601 aaaggcatag caagtttaaa agaaaaattt aatgttgaag tggggctaag tgatcatagc
      661 tttggttttt tagcccctgt tatggcagta gcacttggag ctagagtgat agaaaagcat
      721 tttatgttag ataaaaacat agaaagtgaa gacagtaaat ttagtcttga ttttgatgaa
      781 tttaaagcta tggtagatgc agtaagacaa gctgaaagtg ctttaggcga tggtaagtta
      841 gatctagatg aaaaggcgct taaaaaccgt gtttttgcaa gaagcttata tgcaagtaag
      901 gatatcaaaa aaggtgaaat gttcagcgaa gaaaatgtaa aatccgtgcg tccttctttt
      961 ggactacatc ctaaatttta tcaagagctt ttaggaaaaa aagctactaa agatataaaa
     1021 tttggcgatg ctttaaaaca aggagattt
//
LOCUS       DAQSLY010000210         1022 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.211, whole genome shotgun sequence.
ACCESSION   DAQSLY010000210 DAQSLY010000000
VERSION     DAQSLY010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1022)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.211"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            165..575
                     /locus_tag="R2H98_001803"
     CDS             165..575
                     /locus_tag="R2H98_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEE9024655.1"
                     /translation="MTKQEIQKLDTNLLGHPKPLFSLSMVELWERFAFYGIRSLLVLF
                     MATTISKGGLGISTEYASAIYGIFAGCLYLAALPGGWITDNYLGQKKALFLGSFIIAL
                     GHISIALSILSTPIFFLGLLLSLLVLDFLKLALL"
     gene            539..936
                     /locus_tag="R2H98_001804"
                     /pseudo
     CDS             539..936
                     /locus_tag="R2H98_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002865666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
BASE COUNT          345 a          131 c          149 g          397 t
ORIGIN      
        1 taaagcttga tttaatgttt aaatttgtta atttataata atattaaaat attatatttt
       61 taaatattat tataaaaaaa atatttaaaa atattgtaat ttaattattt ttctattact
      121 attagttcaa atattttaag cataaaaaag aaaggtattg ggaagtgact aaacaagaaa
      181 tacaaaaact cgatacaaat ttactaggtc atcccaagcc tttattctct ctatcaatgg
      241 tagaactttg ggaaagattt gctttttatg gcatacgatc tttacttgtg cttttcatgg
      301 caacaaccat aagcaaaggt ggacttggaa taagcactga atacgcctcg gcaatttatg
      361 gcatttttgc aggatgcttg tatttagcag cacttcctgg aggctggatt actgataatt
      421 atttagggca aaaaaaggct ttatttttag gttcttttat tatagcttta ggacatatta
      481 gcatagcctt atctatttta agcacaccta tatttttcct aggacttctt ttatcgttat
      541 tggtactgga ttttttaaaa ctagcgcttc tgtaacagtt ggaatgttgt ataaacaaaa
      601 tgatacaaga tgtgatactg gctatacgat tttttatata ggaattaaca ttggagcatt
      661 cattgctcct cttatatgtg gttttgttca agcaaaatgg aattatcatt taggatttgg
      721 ctaggaggtt taggtatgct aatctctttg cttattttat attttaaagc tgcccctgag
      781 cttgaagaat ttcataaaaa ttgcacctta aagcaaaact gggaacaacc atttaaaaaa
      841 gtaaaaaatt taactcttat actaagtata agcttgttaa gtattattgg attttttcta
      901 atgtttatta atcttgtaaa tattaatccc atataatact atcaaaaaaa cttctaattg
      961 taattttact atgcttggta atttatttca tatatctttt tgtttttaaa gccttaaata
     1021 aa
//
LOCUS       DAQSLY010000211         1019 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.212, whole genome shotgun sequence.
ACCESSION   DAQSLY010000211 DAQSLY010000000
VERSION     DAQSLY010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.212"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>1019)
                     /locus_tag="R2H98_001805"
     CDS             complement(<1..>1019)
                     /locus_tag="R2H98_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEE9024656.1"
                     /translation="VEVLEYLLRLEDKHVIFDLNLVFALRRLKYGKKDIEKALILFEK
                     IFYKRHSFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQVFLMLSEFEKYED
                     ELEILQKLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDLKNEILEWGLKIF
                     KNNNALKDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAKALNYNAFYFRVL
                     DKLLENAKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDKIIHIKSNLFIIK
                     NTFEDIVMISKLAKENDFKFWFNNETNLSLQIVAPLHFNIAIILSSLTNLNLIFMNFF
                     ELFDN"
BASE COUNT          377 a          159 c           93 g          390 t
ORIGIN      
        1 tattatcaaa aagttcaaaa aaattcatga aaataagatt taaatttgtt aaagaactta
       61 aaataatggc aatattaaaa tgaagtggtg caacaatttg caaactaaga tttgtttcat
      121 tattaaacca aaatttaaaa tcattttctt tggctaattt agaaatcata acaatatctt
      181 caaaagtatt ttttataata aaaagatttg atttgatatg tatgatttta tcttgcaaaa
      241 tttcatcttg ctctaaaaaa atcttacttc ttttaagtgt taattctttt tttactcttc
      301 ttgcgctttc ttcaagtaga ttttcatctt caaaaccttg ttttgcattt tctaaaagtt
      361 tatcaagaac tctaaaataa aaagcattat aatttaaagc cttagccttt agccaagtta
      421 aagtatataa aagctctaaa ttttctaaat tttctagctt agaaaccaaa ctacttacaa
      481 caataggatt gtatatatct tctttttcta caagatcttt taaggcatta ttgtttttaa
      541 atatcttaag accccattct aaaatttcat tctttaaatc aaatttagag caatacgctc
      601 tatatatgcc tgctaaagaa atttcatttt cactttctat agcgcttaaa agtatcacaa
      661 gctttaaaat cattttttca tcggttttaa gtttttggag tatctcaagc tcatcttcgt
      721 atttttcaaa ttcacttaac ataagaaaaa cttgctcatc aaaactataa tttccttctt
      781 catcgcttaa aaaacgaact gtccaaaaag gcttacataa atcttttaaa attccactat
      841 caagcaaaag ttttaaaaca caaaaactat gccttttata aaaaattttc tcaaaaagta
      901 ttaaagcttt ttctatatct tttttaccgt atttcaatct tcttagggca aaaaccaagt
      961 taagatcgaa aataacatgt ttatcttcaa gtcttaataa gtattctaaa acttccaca
//
LOCUS       DAQSLY010000212         1015 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.213, whole genome shotgun sequence.
ACCESSION   DAQSLY010000212 DAQSLY010000000
VERSION     DAQSLY010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.213"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..276
                     /locus_tag="R2H98_001806"
     CDS             <1..276
                     /locus_tag="R2H98_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024657.1"
                     /translation="LSSTSSLSADYALESRINSFEQILNNNENYAQISISVNFINLEN
                     NQIIAHKIFNTKEKIEKKDIRSTYNAFQKALNKIGNEIIFWVNSNLS"
     gene            332..832
                     /locus_tag="R2H98_001807"
     CDS             332..832
                     /locus_tag="R2H98_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024658.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYGGVLAYIQDKRDEIKIILSELATAITMGETMDNAGIYNSTMD
                     FKNLFK"
BASE COUNT          407 a          137 c          144 g          327 t
ORIGIN      
        1 ctttcttcaa caagctcttt aagtgcggat tatgctcttg aaagcaggat taactctttt
       61 gagcaaattc ttaataacaa tgaaaactac gctcaaattt ctataagcgt aaatttcata
      121 aatcttgaaa acaatcaaat aatagctcat aaaattttca ataccaaaga aaaaatagaa
      181 aaaaaagata tccgctctac ttataatgct tttcaaaaag ccttgaataa aattggcaat
      241 gagattattt tttgggtaaa ttctaactta tcctaattta ggaacacttt ttgcttttta
      301 aatatttagc aatatttttg aaaggtaaac aatgaaaagt gatttagata tatttaaaaa
      361 acacttaggt gaaattcagg gcgtgaatga atttaaagca aatcaaattt gctctcaaat
      421 caatgatgca aatgatttta taggagcact tcaagtgctt gatatgtctt taaaaaaaat
      481 agaaaaaagc attctagaaa gaatagatga aaattcagat gatatgcaaa aaagaactct
      541 tgatgccaca gcgtcacaac ttatacaaaa ctgctctttc atgggaacag ctctttttgg
      601 aaatattttc aatgtttatg ttggtaaaaa actttttgaa tttgaaattg ctaatccact
      661 tttaattctt caaacaagta attacggagg tgtattggcc tatatacaag ataaaagaga
      721 tgaaataaaa atcattctat cagaattagc aaccgcaatt accatgggcg aaactatgga
      781 taatgctgga atttataact ctacaatgga ttttaaaaat ttatttaaat aagaatagta
      841 atcgtttgtt ctctttaagc aaatataata tattttagct taaagagatt ttccaaactc
      901 taaaagagag ttaggctacg aataaaaagg ggagggaaat agcctaaccc aaaagagatc
      961 ttaaaagatc tctttaaacc aaaatacata tttagataat ttaacaattt ttatt
//
LOCUS       DAQSLY010000213          986 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.214, whole genome shotgun sequence.
ACCESSION   DAQSLY010000213 DAQSLY010000000
VERSION     DAQSLY010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.214"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..441
                     /locus_tag="R2H98_001808"
     CDS             <1..441
                     /locus_tag="R2H98_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEE9024659.1"
                     /translation="LDILQEMIIEFAKYEDMLDFLQCTKEKLEHSLLKNKFARAFLLK
                     ENEKTIGYMIYFYTFSSFWGSSGIYLEDIYIRENFRKKGYGKAVFKFLGEICKKENLK
                     RLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            438..>986
                     /locus_tag="R2H98_001809"
     CDS             438..>986
                     /locus_tag="R2H98_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEE9024660.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEK"
BASE COUNT          369 a          104 c          151 g          362 t
ORIGIN      
        1 ttagatattt tacaagaaat gatcatagaa tttgcaaaat acgaagatat gttagatttt
       61 cttcaatgca cgaaagaaaa actggaacat tctttactaa aaaataaatt tgctcgtgct
      121 tttttgttaa aagaaaatga aaaaactata ggctatatga tttattttta tactttttcg
      181 tctttttggg gcagcagtgg aatttatctt gaagatattt atatacgaga aaattttcgt
      241 aaaaaaggtt atggaaaagc tgtgtttaaa tttttaggag aaatttgcaa aaaagaaaat
      301 ttaaaaagac tcgactgggt ttgcttaaat gataatattt taggtattaa tttttatgaa
      361 agtttaaacg ctaaacatct taaacaatgg agaaattatc gtctaagtgg agaaaattta
      421 gaaaaattgt gtgatttatg ataagaagtc tttattattt aaaagctatg ggatttaact
      481 ttgttgatac acatacaaac cactttgaac aagtacaaaa ttttcaagaa ttaaaacaac
      541 ttgtttcatc ttgcacctta tgccaatttt ccaaaacaag aaaatttagt cttatggagc
      601 ctaagataaa aaatgccaaa ttgctaattc ttgatgtttt tgggcaaaag agtgaaaatg
      661 aaagcggaat tttacttaat tcaaaaaaag gtgaaaaatt aaaacactat atttatcaaa
      721 ttttagggct ttgcgatgaa gatttttatt tttcttattt atttaaatgt ttttgtaatg
      781 gaaaatttga tgatttttcg ctacaatctt gcttaccatt tttctggaac gaactaaaac
      841 tgattcaacc tgcttttttg ctttgtctag gagaatatac atttaaaagc ttgggattta
      901 aagattatca cattttaaaa ggtgaagttt ttgcttataa aaattttttc ataatgccaa
      961 gttatgattt agattttata gaaaaa
//
LOCUS       DAQSLY010000214          940 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.215, whole genome shotgun sequence.
ACCESSION   DAQSLY010000214 DAQSLY010000000
VERSION     DAQSLY010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.215"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..915)
                     /locus_tag="R2H98_001810"
     CDS             complement(<1..915)
                     /locus_tag="R2H98_001810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024661.1"
                     /translation="MSHALKIYTPGIQAQKSAFSQCAMMIAGRKNIISYHEIFSLKQQ
                     YQIIKSNLGLLGLDSLYDSMAYFQLYKLSRILNLTLDLSLNYIKKAMELDQDNDAWGI
                     HYIYCCFLLGDLEAIETFLKVLLDSNKLNNLLQTFIISKSMRIYKEQEDCFISFRSTK
                     IYPMINYVGIWLNYHYGEFVRMYKMYKNYQKYFNDLEVDTQCFFSCYQKKDLISNSAV
                     LIVKNHLSYKLGKILLECKNLKDFVEIPIIIKYFLWESKNEKAYFKSFLFEIEKLDDY
                     NQSCSIRNYLSYQLGKLIIESFKGWYKGY"
BASE COUNT          359 a          138 c           96 g          347 t
ORIGIN      
        1 ataaccttta taccaacctt taaaactttc aataattaac tttccaagtt gataagacaa
       61 ataatttcta atgctacaac tttgattata atcatccaat ttttctatct caaataagaa
      121 cgatttgaaa tatgcttttt catttttaga ttcccaaaga aaatatttta taataattgg
      181 aatttcaaca aaatctttta aatttttaca ttccaataga attttaccca acttgtaact
      241 taaatgattt tttacaatta atacggcact atttgatata agatcttttt tttgatagca
      301 agaaaaaaaa cattgtgtat caacttctaa atcattaaaa tatttttgat aatttttata
      361 catcttatac attctaacaa attctccata atgataattt aaccatatgc caacataatt
      421 tatcatggga tatatctttg tggatcgaaa agaaataaaa caatcctctt gttctttata
      481 aattctcata gatttagaga taataaaagt ttgaagtaaa ttatttaatt tattactatc
      541 aagcaatact ttcaaaaaag tttctatagc ttcaagatcg ccaagtaaaa aacaacaata
      601 tatgtaatga ataccccaag catcattatc ctgatctaac tccatagctt ttttaatata
      661 gttcagagat aagtcaagtg ttaaatttaa aattctagaa agcttatata attgaaaata
      721 agccatagaa tcatataaac tatctaaacc taatagtcct aaattacttt taattatttg
      781 atactgttgc ttcaaggaaa atatttcgtg gtaagaaata atatttttcc tgcctgcaat
      841 catcattgcg cattgagaga atgctgattt ttgagcctga atacctggtg tataaatctt
      901 taatgcatga gacatcaaat tcatttcaaa gaatgttcgt
//
LOCUS       DAQSLY010000215          938 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.216, whole genome shotgun sequence.
ACCESSION   DAQSLY010000215 DAQSLY010000000
VERSION     DAQSLY010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.216"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>938
                     /locus_tag="R2H98_001811"
     CDS             <1..>938
                     /locus_tag="R2H98_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEE9024662.1"
                     /translation="LHCFKKEKVLIDKVFIEQIDDKNDEILIKFYTADVNDEIKMLFD
                     DRLAKIICSKIRQYDFLNRVFIYERRIWLKFFIDAKNMICFINDKKVDIIYQEKRCTS
                     YNISYEIKKLKKRRAKNKSLWLFADMPFRADDNAEHLYRYVMKNYPEKNIAFVLRKNS
                     HDYKRLKKEGFKLVDPKSFKFKYLVFKADKLISSHIERYFFEALGENTLKTKDFVFLQ
                     HGITQNDLSSWLNQRKIDLFITGMQDEYDSIAGDFNRYKFTPKEVKLTGFPRWDALLK
                     NNKIKTKQILIMPTWREYIVGSYSKKLMKRRFNPKF"
BASE COUNT          369 a           91 c          146 g          332 t
ORIGIN      
        1 tttgcattgt tttaaaaaag aaaaagtgct tatagacaaa gtttttatcg agcaaataga
       61 tgataaaaat gatgaaattt taattaaatt ttatacggca gatgttaacg atgaaattaa
      121 aatgcttttt gacgatagat tagccaaaat catttgttca aaaatcagac agtatgattt
      181 tttaaaccga gtttttatct atgaaagaag aatttggctt aaatttttta tagatgctaa
      241 aaatatgatt tgttttatta acgataaaaa ggttgatata atctatcaag aaaaaagatg
      301 tacttcttat aatatttctt atgagattaa aaaattaaaa aaaagaaggg ctaagaataa
      361 atcattatgg ctttttgctg atatgccttt tagagccgat gataatgctg aacatttata
      421 tcgctatgtt atgaaaaatt atcctgagaa aaatatcgcc tttgtcctta gaaaaaattc
      481 tcatgattat aaaagactaa aaaaagaagg ttttaaactg gttgatccaa aaagttttaa
      541 atttaaatat ttggttttta aggctgataa actcatttca tcgcatattg agaggtattt
      601 ttttgaagcc ttgggggaaa atactttaaa aactaaagat tttgtatttt tgcaacatgg
      661 aattactcag aatgatttat cttcttggtt gaatcaaaga aaaattgatt tatttattac
      721 tggaatgcaa gatgaatatg attctatagc aggagatttt aatcgttata aatttactcc
      781 taaagaggta aaattaacgg gatttcctag atgggatgct ttgcttaaaa ataataaaat
      841 aaagactaaa caaattctta ttatgcctac ttggagagaa tatatagtag gttcttatag
      901 taaaaaatta atgaaaagaa gatttaatcc aaaatttt
//
LOCUS       DAQSLY010000216          906 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.217, whole genome shotgun sequence.
ACCESSION   DAQSLY010000216 DAQSLY010000000
VERSION     DAQSLY010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 906)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.217"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            77..481
                     /locus_tag="R2H98_001812"
     CDS             77..481
                     /locus_tag="R2H98_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxcM-like domain-containing protein"
                     /protein_id="HEE9024663.1"
                     /translation="MKNYKILKLDAIKDDRGKLVALESNKEIPFEIKRVYYIFDTDPN
                     FPRGAHAHKNLEQVLIMMSGSCDIILNDGKNCEKICLNRPDMGLYIGKNMWREMKNFS
                     YGAKLLVLASDFYDEKEYIRNYDEFLRNINDT"
     gene            471..>906
                     /locus_tag="R2H98_001813"
     CDS             471..>906
                     /locus_tag="R2H98_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEE9024664.1"
                     /translation="MIHKMSDVQSSNIGKNTNIWQFCVVLPNAKIGDNCNICSHCFIE
                     NDVVIGDNVTIKCGVQIWDGITIEDNVFIGPNVTFCNDKYPKSKQYPKEFLKTIIKKG
                     ASIGANATILPGVIIGENAVIGGGLSLQKILQPIQLIIAKLFQ"
BASE COUNT          362 a           80 c          181 g          283 t
ORIGIN      
        1 agtatttttg tgaattaaaa aataatatag ggcggcgggg gggggtatgc tataaaaatc
       61 atgccttaaa agtggcatga aaaattataa aattttaaag ttagatgcca taaaagatga
      121 tagaggtaaa ttagtagctt tagaaagcaa taaagaaatt ccatttgaga taaaaagggt
      181 gtattatata tttgatacag atccaaattt tccaagagga gcacatgcac ataaaaattt
      241 agagcaagtg cttataatga tgagtggttc ttgtgatata atactaaatg atggaaaaaa
      301 ttgtgaaaaa atttgtttaa atcgtcctga tatgggtctt tatataggta aaaatatgtg
      361 gagagaaatg aaaaattttt cttatggagc aaaattgcta gttttggcaa gtgattttta
      421 tgatgaaaaa gagtatataa gaaattatga tgaattttta aggaatatta atgatacata
      481 aaatgtcaga tgtacaaagt agtaatatag gtaaaaatac aaatatatgg caattttgcg
      541 tagttttacc taatgctaaa ataggagata attgcaatat atgttctcat tgctttatag
      601 aaaatgatgt tgtgattgga gataatgtta cgattaagtg cggggttcaa atatgggatg
      661 gtataacaat agaagataat gtttttatag ggccaaatgt aacattttgc aatgataaat
      721 atccaaaatc aaaacaatat ccaaaagaat ttttaaaaac tataattaaa aaaggcgcga
      781 gtattggtgc taatgcgaca attttaccag gtgtaattat aggagaaaat gcagtgatag
      841 ggggggggct atcgttacaa aagatattgc agccaataca acttattatt gcaaaattat
      901 ttcaaa
//
LOCUS       DAQSLY010000217          868 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.218, whole genome shotgun sequence.
ACCESSION   DAQSLY010000217 DAQSLY010000000
VERSION     DAQSLY010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.218"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..777
                     /locus_tag="R2H98_001814"
     CDS             <1..777
                     /locus_tag="R2H98_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEE9024665.1"
                     /translation="HDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGEIIYKNISD
                     FFIDKELKYELLLNFLQQEKITKIFLDASIKLQFDDIDYCDIFYFQKGILPHSWFFTK
                     NLDLDYKQDLNLSEQKLYQVKKYFLTLKEDEKKVILDLLGQNNDDKCDLYEMLYYLIN
                     ELYSFEHEGIFYQIIIDKEKILMAQKHDKSFYPLRSFVYKPYLHELKSIRPFSFLMKI
                     LGLEYLGAMISHTKFYRLARKLFFNPKGFFEDLRIKKARN"
BASE COUNT          332 a           78 c          123 g          335 t
ORIGIN      
        1 cacgatttaa aacctttgca agtttttaaa gccaaaggtg aaaaagtttt aatgcttttt
       61 aaagatcaaa attatgattt taaggatatt agtgtttatg tgggagaaat catttataaa
      121 aatataagtg attttttcat agataaagag ttaaaatatg aacttttgtt gaatttttta
      181 caacaagaaa aaatcactaa aatattttta gatgcaagta taaaactaca atttgatgat
      241 atagattatt gtgatatttt ttattttcaa aaaggcattt tacctcattc ttggtttttt
      301 acaaaaaatt tagatttaga ttataaacaa gatttgaatt taagtgagca aaaactttat
      361 caagttaaaa aatatttttt aactttaaaa gaggatgaaa aaaaagtcat tttggatctt
      421 ttaggccaaa ataatgatga taagtgtgat ttgtatgaaa tgctttatta tttgattaac
      481 gagctttata gttttgagca tgagggaatt ttttatcaaa tcatcattga taaagaaaaa
      541 atactgatgg cacaaaaaca tgataaaagc ttttatcctt taagatcttt tgtttataaa
      601 ccttatttac atgagcttaa gagcataagg cctttttcat ttttgatgaa aattttaggt
      661 ttagagtatc ttggtgctat gatttcacat actaaatttt atcgcttggc aagaaaattg
      721 ttttttaatc ctaagggatt ttttgaggat ttaagaatta aaaaggctag aaattgatat
      781 gttgttaaaa gcaaagtata aaaaaaatat atctttcttc tttaaaagtt tgttaatttc
      841 cctacaaaat tttttaaaac aatttaaa
//
LOCUS       DAQSLY010000218          861 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.219, whole genome shotgun sequence.
ACCESSION   DAQSLY010000218 DAQSLY010000000
VERSION     DAQSLY010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.219"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            1..>861
                     /locus_tag="R2H98_001815"
     CDS             1..>861
                     /locus_tag="R2H98_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEE9024666.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKIKFES
                     IIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKNLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKAL"
BASE COUNT          308 a           87 c          133 g          333 t
ORIGIN      
        1 ttgttaaata aagaattaga aatttttaaa aaaaatctta gttcctatac ccaaagttgt
       61 agaaaatttt ttcttaagca aggggcgttt agcttatatc attctaaaaa tatggataat
      121 ttcataaaaa aagcttatga tatagttctt aaagattatt ttgatgattt ttcacctcca
      181 agtgataata tccctttttg tgttttagca agcaaagcat atgcaaataa tagtctttgt
      241 tttaatgaaa gtatttcttt gatttttgtt tataaagata ttaaggcttt tcatttaaaa
      301 cctatgatta aggcttttat cgaaatttta aatgatgcgc atttgcaaat tgattcggtt
      361 atcttagaat ttaatggact ttataatgct agcaatgagc ttaagacttc cataatacaa
      421 actcgtttca tatgtggttc taggatttta tttaaaggga ttaagataaa atttgagagt
      481 attataaaag aaaataaaaa tgattttgcc aagcttttgc tagaaaattt taaagaattt
      541 gacattccat ttataaagca agaatttaat atcttaaaag attttggcgg attaaatcat
      601 ttaagatcct tagagagttt gcttgttctt tttaagactt ctccaaaaaa ttatgcttta
      661 aattttatag atgaaaaaaa tttaagcgag ttgcgtttag ctggagattt tttactttct
      721 ttaaaatcag cgatgaattt attaagtgct aaagatgagg atgaattttt acttattaat
      781 gttcatgatt tgagtgaatt aatgtataaa aaagctaaaa aacattttgg agcaaatgag
      841 ttgttggttc aaaaggcttt g
//
LOCUS       DAQSLY010000219          858 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.220, whole genome shotgun sequence.
ACCESSION   DAQSLY010000219 DAQSLY010000000
VERSION     DAQSLY010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.220"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..832)
                     /locus_tag="R2H98_001816"
     CDS             complement(<1..832)
                     /locus_tag="R2H98_001816"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEE9024667.1"
                     /translation="MIDLKRIFYNLDFKENLRYIINQVINLVKTFGEDFIALHIRGAD
                     IIYGDYYKKWSLQDFVGDKVFPYEIALEIIKRHTNANVKIIIFGQDVKSNMKLLNYII
                     ENKILPKNKIFTVDEFINQTFSSLQRVFFEINLMSKAYAIYSPKVSAFSRAAMMISGK
                     DILIAYEDIFNVQERFDIIQRNLFSLGLNDLQIARSLFYQYTLSLKLKMPLNICLEIL
                     KKALYFDRDNDAYRIYIIDNLFQTYQHELINRYLKIILNNRYDCFLKTLCDNSLNVFC
                     D"
BASE COUNT          346 a          120 c           75 g          317 t
ORIGIN      
        1 aatcacagaa aacattcaaa gaattatcac ataaagtttt taaaaaacaa tcatatctat
       61 tatttaaaat tatttttaaa taacgattta taagttcatg ttgataagtt tgaaataagt
      121 tatctattat atagatccta taagcatcat tatctctatc aaaataaagt gcttttttca
      181 aaatttccaa gcatatattt aaaggcattt tcaattttaa agataaagta tattgataaa
      241 agagagatct agctatttgc aaatcattta atcccaaaga aaataaattc ctttgaatta
      301 tatcaaatcg ttcttgtacg ttaaatatat cttcatacgc aatcaatata tctttcccag
      361 aaatcatcat agcagctcta gaaaaggctg atactttagg agaataaata gcataagctt
      421 tagacattaa atttatctca aaaaaaactc tttgaagtga agaaaaagtc tgatttataa
      481 attcatcaac ggtaaaaatt ttatttttag gtaaaatttt attctcaata atatagttta
      541 ataatttcat atttgattta acatcctgcc caaaaataat aatttttaca tttgcattag
      601 tatgtctttt aataatttct aatgcaattt cataagggaa aaccttatcg cctacaaaat
      661 cttgcaaaga ccacttttta taataatctc cataaatgat atcagcacct ctaatatgta
      721 gcgctataaa atcttcacca aatgttttaa ctaaattaat tacttgattt ataatatatc
      781 ttaaattctc tttaaaatct aaattataaa atattctttt taaatcaatc aagcattcaa
      841 tctcattaca atttaaaa
//
LOCUS       DAQSLY010000220          850 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.221, whole genome shotgun sequence.
ACCESSION   DAQSLY010000220 DAQSLY010000000
VERSION     DAQSLY010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.221"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(33..383)
                     /locus_tag="R2H98_001817"
     CDS             complement(33..383)
                     /locus_tag="R2H98_001817"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024668.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFEIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(359..652)
                     /locus_tag="R2H98_001818"
     CDS             complement(359..652)
                     /locus_tag="R2H98_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HEE9024669.1"
                     /translation="MLLDKLIPTWNEYSIHDTMIDIQHQKLCELASKVESAVYKFVKR
                     EELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT          281 a          101 c           94 g          374 t
ORIGIN      
        1 tttatttatt attttaacgc ataaatagtt aattagaaat tttctgaata ttttttataa
       61 aactgtatgg cttctttgca ttttttacat ttaaatttta cgcccttaag ttgaattttt
      121 tgatgaattt caaatggtac atcatgcatt tgttctacgc attcgcatgt ataaagataa
      181 actgtatttt catcatcttt ttcttctttg acttcttcaa agcttacttc cccatcatct
      241 tcagaagtta aagaagatct tctgtattgt tcaactttca catctttata gagtatatgt
      301 tctaaaagcc attttttaga aactgtgtaa agcttctctt ttaaatcatt agtggttttt
      361 atgttttgta taagataaga catatcacga atgatatttt atgcatgatt ttgtgttcat
      421 ttaaataagg ataatgaatt tcttgcatat aatcttcttc attactaaaa tgttctttca
      481 tatagttaaa aagttctgtt aaaatttctt tgagttcttc tcgttttaca aatttataaa
      541 cagcactttc aaccttgctt gcaagttcac aaagtttttg gtgttgaatg tcaatcattg
      601 tgtcatgaat actgtattca ttccaagttg gaattagttt atctaaaagc accttcttta
      661 atttttgtat ttaaaaatta atttaatata tttgagtgaa atattacata atattttatt
      721 aaaatattat taattagaaa ttatttattt tatttatatt tgtataatat aaaaaatata
      781 tataattaat attaaaaatt aagacttact gattctagta tagaatcagt aaataataat
      841 atgtgcaatt
//
LOCUS       DAQSLY010000221          819 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.222, whole genome shotgun sequence.
ACCESSION   DAQSLY010000221 DAQSLY010000000
VERSION     DAQSLY010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.222"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            21..425
                     /gene="exbB"
                     /locus_tag="R2H98_001819"
     CDS             21..425
                     /gene="exbB"
                     /locus_tag="R2H98_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEE9024670.1"
                     /translation="MDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYENQEQFDDA
                     ISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLVGNIDVKSIVVGLSLALKATAL
                     GLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            418..807
                     /gene="exbD"
                     /locus_tag="R2H98_001820"
     CDS             418..807
                     /gene="exbD"
                     /locus_tag="R2H98_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEE9024671.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENTTNINNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
BASE COUNT          304 a          112 c          116 g          287 t
ORIGIN      
        1 tggaattttt aaaagattac atcgatttaa ttatcttttt aattctagga attatggcat
       61 ttatagcttt ttggtgtgtt gtagaaagaa tgctattttt tagaaaaatt aactttaaaa
      121 attatgagaa tcaagagcaa tttgatgatg cgattagtga aaatttaacc accatatata
      181 tcatctattc caatgcccct tatataggac ttttaggcac tgtaataggc atcatggtta
      241 cattttacga aatgggctta gtgggcaata tagatgtcaa atctatagtc gtgggacttt
      301 ctttagctct taaagctaca gccttaggac ttttggttgc tattcctgct ttaatggctt
      361 ataatgcctt acttagaaaa gtttccctct taagcaatgc ttataaggca aataaaaatg
      421 cttaaactac caaaaaatga aggtttaaat atagtcccat ttatagacat tatgcttgtt
      481 ttgcttgcta tagtgcttag tatttcaacc tttattgcgc atggaaaaat tcaaatctca
      541 cttccttcaa gtgaaaatac taccaatata aacaataatg aaaaaaaact tcttataacc
      601 atagacgaaa aaaatacttt ttatttaaat gataaattag ctgatttaaa tgaagttcaa
      661 aatgctattt tttcacttga taaaaaaacc atagtagaac taaaaagcga taaaaatgct
      721 aaatttgaaa gctttgtaaa aattatagat tttttaaaag ccaaagaaca tgaaaatttt
      781 cagattctta ctgagaaaaa caaatgaaaa ctttatttt
//
LOCUS       DAQSLY010000222          815 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.223, whole genome shotgun sequence.
ACCESSION   DAQSLY010000222 DAQSLY010000000
VERSION     DAQSLY010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.223"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            28..>815
                     /locus_tag="R2H98_001821"
     CDS             28..>815
                     /locus_tag="R2H98_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEE9024672.1"
                     /translation="MKIKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLK"
BASE COUNT          350 a          106 c          112 g          247 t
ORIGIN      
        1 tttttttatt aaataaagga atcactcatg aaaatcaaag atatggaaat atttttagat
       61 cttttaaaca ctcaaagtcc aactcataca gccaacaatt tttccataac tcaacctaat
      121 gtttcaatag taattaaaaa tttagaaaat aaatttgatg gcattttatt tgaaagactt
      181 ggaaaaaaac tcttacctac accaaaagct ttagaactag gaaaaaattg gttaaaaatt
      241 atacaagcct actaccaaag cttagaaaaa ttaaacgacg aaagtatgct cttaggggaa
      301 ataaaaatag cctcaactca aagcatttct gaacattttt tagctcctat tttatttgat
      361 tttaaggcag aatttaaaaa catagaaatt cgctctcaaa cgcagaattc aaaagaatgt
      421 ttaaatttac taaaaaacgg aaatatagaa tttgcaatca ttgaagcaga acttgatcca
      481 gctttagtgg agtatgaaaa tttagaaata aatttttggc aagatgatga acttatagta
      541 gctacaagtg ataaaaaact caatgaaaaa gaattttata tcgatgaact tttggaacaa
      601 aagtggattt taagagaagt aggctcaggc ttaagggata aatttttaaa cgaaattggt
      661 gcaagctcaa aaaaacttaa tatttttctt gaacttgata gaatggctgc gattaaagaa
      721 cttgttttac aaaaaaaagc aatctctatt ttttccaaaa aaagcataga aaaagaatta
      781 aaaaattcaa cactttatga aattaaatta aaaaa
//
LOCUS       DAQSLY010000223          808 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.224, whole genome shotgun sequence.
ACCESSION   DAQSLY010000223 DAQSLY010000000
VERSION     DAQSLY010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 808)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.224"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>808
                     /locus_tag="R2H98_001822"
     CDS             <1..>808
                     /locus_tag="R2H98_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEE9024673.1"
                     /translation="IANSIAIFALSILSIISFYFTKDSLYQSTLYTETELLKATQISI
                     EDFRSRNISLLNTLEKDILKLPYEALNSQDNIVNNVGAILKYYRNSGNLLAVYIGLDN
                     GENIMSSDLSEKKNTNITINGKANNYNATTREWYKEARNSNQIYITPAYIDAISNEYC
                     ITYSKALYKDGKFIGVLGIDILLTSLQDQIARTPGNTFVFDNKDKIFAATNEALLDPS
                     VDHSPVLNAYKAHGDNNFFSYKLNNEERLGACTKVFAYTACITESADIIN"
BASE COUNT          298 a          117 c          120 g          273 t
ORIGIN      
        1 ttattgcaaa ttcaattgca atttttgctt taagtatttt gagcatcatt agcttttact
       61 ttacaaaaga ttctttgtat caaagtacgc tttatactga aacagaactt cttaaagcaa
      121 cacaaatttc tatagaggat tttagatcca gaaatatatc tttgcttaat actcttgaaa
      181 aagatatatt aaaattaccc tatgaagcac taaattctca agataacata gttaataatg
      241 taggggccat attaaaatac taccgcaata gtggaaattt gcttgctgtt tatattggtt
      301 tagataatgg tgaaaatatc atgagtagtg atctaagcga gaaaaaaaat actaatataa
      361 ctataaatgg aaaagccaac aactataatg caactactag ggaatggtat aaagaagcta
      421 gaaatagtaa tcaaatctat ataaccccag cttatattga tgctattagt aatgaatact
      481 gcattactta ctctaaagct ctttataagg atggtaaatt tattggtgtt ttaggaattg
      541 atattttatt aactagttta caagatcaaa tcgctagaac tccaggcaat acctttgttt
      601 ttgataataa agataaaatt tttgcagcca ccaacgaagc tttattagat ccttcggtag
      661 accattctcc tgttctaaat gcatataaag ctcatggtga taacaacttc ttctcttata
      721 agttaaataa tgaagaaaga cttggagctt gtactaaagt ctttgcttat acagcttgta
      781 ttaccgaaag cgctgatatt ataaataa
//
LOCUS       DAQSLY010000224          795 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.225, whole genome shotgun sequence.
ACCESSION   DAQSLY010000224 DAQSLY010000000
VERSION     DAQSLY010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.225"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..787
                     /locus_tag="R2H98_001823"
     CDS             <1..787
                     /locus_tag="R2H98_001823"
                     /inference="COORDINATES: protein motif:HMM:NF013882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HEE9024674.1"
                     /translation="RFLFMKFFIINLKIAKDRKEYMQNLCLKHNLDYEIIQAVDGKEL
                     DSDFVKNISDFSLSEKYLGRTLSLGEIGCALSHKKCFERMFELNLNECLILEDDAYFD
                     EKLNYILSLKDKFPKDLELFLLGHYRQVYLDDGFRIESPFSLRYDYKIDDFYHAKRLV
                     GGGNGTHGYYINKNGALKMYKYLEKIIFPYDHCTSNDNIINVYALYPVVITTDEIFGA
                     QTYVQDDNKRRYRKRSKISKYIKKIKNKIIFFIPSLKKLRKYE"
BASE COUNT          323 a           60 c          126 g          286 t
ORIGIN      
        1 taggttttta tttatgaaat tttttataat caatttaaaa atagccaaag atagaaaaga
       61 atatatgcag aatttatgtt taaagcataa cttagattat gaaatcatac aagctgttga
      121 tggaaaagag ttggatagtg attttgtaaa aaatattagt gatttttctt tatcggaaaa
      181 atatttaggt agaactttaa gtcttggtga gatagggtgt gctttatccc ataaaaaatg
      241 ttttgaaaga atgtttgagt taaatttaaa tgagtgtttg atattggaag atgatgctta
      301 ttttgatgaa aaattaaatt atattttaag tttaaaagat aaatttccaa aagatttaga
      361 attattccta cttggtcatt ataggcaagt ttatttagac gatggatttc gtatagaaag
      421 cccattttct ttaagatatg attataaaat agatgatttt tatcatgcaa aaagattagt
      481 tggtggtggc aatggaaccc atggatatta tatcaataaa aatggtgcct taaaaatgta
      541 taaatactta gaaaaaataa tatttccata tgatcattgt actagtaatg ataacataat
      601 aaatgtatat gctttatatc ctgttgttat aactactgat gagatatttg gagcccaaac
      661 ttatgtgcaa gatgataata aaagaagata tagaaaaaga agtaaaattt caaaatatat
      721 aaaaaagata aaaaataaaa tcatattttt tatacctagt ttaaaaaaat tgagaaaata
      781 tgaataattt tgtat
//
LOCUS       DAQSLY010000225          793 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.226, whole genome shotgun sequence.
ACCESSION   DAQSLY010000225 DAQSLY010000000
VERSION     DAQSLY010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.226"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            4..399
                     /gene="perR"
                     /locus_tag="R2H98_001824"
     CDS             4..399
                     /gene="perR"
                     /locus_tag="R2H98_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEE9024675.1"
                     /translation="MLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEYPSISL
                     ATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCAKCGGIEDLSFKDAKLYE
                     YQEHLEKKIGNLVNHLSVCAYVDSCKKCH"
     gene            445..>793
                     /locus_tag="R2H98_001825"
     CDS             445..>793
                     /locus_tag="R2H98_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024676.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKSIKKERFEFKFCSL
                     KSYIDIYEEPKICI"
BASE COUNT          326 a           87 c          109 g          271 t
ORIGIN      
        1 caaatgctta aaaaacatga gttaaaagct actccgcaaa gactatgtgt tttaaaaatt
       61 ttaaaaagac atgagcatcc taatattgat gaattatata cagaaattaa aaaagaatac
      121 ccttcaatct ctttagcgac ggtttataaa aatcttaata ctttacaaga acaaggttta
      181 gttgttgaaa tcaatgtttt aaatcaaaaa acttgttacg atatctatga agaagaacat
      241 attcatgttg tttgcgccaa atgtggtggt atagaggatt taagttttaa agatgctaag
      301 ctttatgaat atcaagagca tttagaaaaa aagataggca atctcgtcaa tcatctgtct
      361 gtttgtgctt atgttgatag ttgcaaaaag tgtcattaag caaaataagg ttaaaataac
      421 ccatatattt taagggttat tttaatggtt tatgaaattc aaaaaaactt tttactatct
      481 gattgcactc ttttagagaa tttaaaaaaa gataatatac cttttcgaaa ttctaaattt
      541 gaaacttttt atactcaaat aacttcaaat catagtgtta aatttcaaag tttttgcaat
      601 gaattttata aaattacaaa atttaataat tcaattttag aacagaatca agaagagaaa
      661 atttctaaaa aaaaatttga aaaagctcga aaaaagatta taggaaagag tattaaaaaa
      721 gaacgcttcg aatttaaatt ttgctcttta aaaagttata ttgatattta tgaagagcct
      781 aaaatttgta ttt
//
LOCUS       DAQSLY010000226          783 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.227, whole genome shotgun sequence.
ACCESSION   DAQSLY010000226 DAQSLY010000000
VERSION     DAQSLY010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.227"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            24..632
                     /gene="plsY"
                     /locus_tag="R2H98_001826"
     CDS             24..632
                     /gene="plsY"
                     /locus_tag="R2H98_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEE9024677.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            617..>783
                     /locus_tag="R2H98_001827"
     CDS             617..>783
                     /locus_tag="R2H98_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEE9024678.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERKKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKK"
BASE COUNT          286 a           99 c          120 g          278 t
ORIGIN      
        1 taagatgatt tgaaaaggat attatggaaa atttaataat ttacgctttt atatatcttt
       61 taggttcaat cccttttggg ctaatcctag ctaaattttt tgctaaaact gatatcaaaa
      121 aagaaggttc aaaaagtata ggagcaacca atgttttaag agtagtaaaa gaaaaaaatc
      181 ccaaactagc aaaaaaactt gccattgcta caataatttt agattttgca aaagcagcta
      241 ttcctttact aatcttgaaa tttcttcatt atgatcaagc tttgctttgg agcgtcgcag
      301 ttttggctat ttttggacac tgtttttcaa tttacttgtt atttgaagga gggaaaggca
      361 tagcaacagg agcaggcgct atgatagttt tacttccatt ggaagtgctt acagcattta
      421 ttgtgtgggt agttattgga aaaattttta aaatatcttc gctagcttct ttggcagcgt
      481 tacttgcttt tgttataagt tcttttatat ttaattatga cttagaaatt catacacatg
      541 cacccgtttt cattatcgct tttattatag tatataaaca tctacctaat attaaaagat
      601 tgatttttaa agaagaatgc aaagtcatat aaaaataaaa tttcacttta agtgtattat
      661 tggtatatta gatttcgaaa gaaaaaaaaa acaaaaaatt attatcaagc ttaaagctaa
      721 agcaaatgaa tttttaaatt atgcagaggt aattaccaaa attaaaacat ggtataaaaa
      781 aga
//
LOCUS       DAQSLY010000227          764 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.228, whole genome shotgun sequence.
ACCESSION   DAQSLY010000227 DAQSLY010000000
VERSION     DAQSLY010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.228"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..409
                     /locus_tag="R2H98_001828"
     CDS             <1..409
                     /locus_tag="R2H98_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024679.1"
                     /translation="EYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLNFTLSNKI
                     SSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNELKITNLEFEQTKIILSFIDE
                     NHFKRALENLNSTFKFLDKNEETLNIILEVIHE"
     gene            402..>764
                     /locus_tag="R2H98_001829"
     CDS             402..>764
                     /locus_tag="R2H98_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024680.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDRFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLTINEIKFSQE"
BASE COUNT          354 a          103 c           67 g          240 t
ORIGIN      
        1 agagtacaaa caaaataagg aaattcaaaa taaaaatttt atcatacaag aagaaatttc
       61 taaactaaaa caagataagc aaaaattatt aacaaacata caagatttaa actttactct
      121 ttccaataaa atatcatcta cacaacaaca atttcatatt ttatccacca taacaaaaga
      181 aatcaattta gataaaaata aggcaatcat tctaaatcaa atcatatcat ggcttaattc
      241 caatgaactt aaaatcacaa atcttgaatt tgaacaaaca aaaatcattc tttcttttat
      301 cgatgaaaac cactttaaaa gagcattaga aaatctaaat tctactttta aattccttga
      361 taaaaatgaa gaaacattga atatcatatt agaagtcata catgaataaa atagaagtat
      421 ttttgcaaaa tttaaatcct agggaaaaat ttctttttat ttcttttatc tgcctttgtg
      481 ctttgttttt agcttttaaa attcacgatc gctttttgga agatattttt caaaaaacat
      541 tagtagaaca taattacctt gcattaaatg aagcaaaaat agaaaattca catcttaaag
      601 aaatagagac aaagctaaca aaacagataa aaacagagga agaaaaatta aaatactata
      661 aagaaaaatt gcatttattt tcttatgata aagatttttt caataaaaaa atcaataatt
      721 tatccaaaaa tttaaccatt aatgaaataa aattttccca agaa
//
LOCUS       DAQSLY010000228          725 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.229, whole genome shotgun sequence.
ACCESSION   DAQSLY010000228 DAQSLY010000000
VERSION     DAQSLY010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.229"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            101..235
                     /gene="rpmH"
                     /locus_tag="R2H98_001830"
     CDS             101..235
                     /gene="rpmH"
                     /locus_tag="R2H98_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEE9024681.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            232..558
                     /gene="rnpA"
                     /locus_tag="R2H98_001831"
     CDS             232..558
                     /gene="rnpA"
                     /locus_tag="R2H98_001831"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEE9024682.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            555..>725
                     /gene="yidD"
                     /locus_tag="R2H98_001832"
     CDS             555..>725
                     /gene="yidD"
                     /locus_tag="R2H98_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEE9024683.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNP"
BASE COUNT          271 a           90 c          123 g          241 t
ORIGIN      
        1 tatcaaaaga atttaaaaat tactcttaat caaaagcaat ttataagtaa gattaagata
       61 aaatacaagt ttattttata attttttaag gaaaaatcaa atgaaaagaa cttatcagcc
      121 acatggcact ccaagaaaac gtactcatgg ttttcgtgtt cgtatgaaaa ctaaaaatgg
      181 tcgcaaggtg atcaatgcaa gacgcgctaa aggtagaaaa agacttgctg tgtgaaaaat
      241 tttgataaat ttagcacaaa cgaggaattt tcatctgtat acaaaatagg taaaaaatgg
      301 cattgcgaag gtgtgattat tttttatctg aatagttatg aaaaaaaaat agcagttgtt
      361 gctagtaaaa aagttggaaa agcagtggtt agaaatcgtt caaaacgaat tttaagggct
      421 ttgtttgcta agtttgaaag atatcttcaa gatggcaaat atatttttgt agctaaaaat
      481 gaaatcactg aactttcttt ttctaggtta gaaaaaaatc taaaatgggg attgaaaaaa
      541 ctagaatgtt tcaaatgata tgcctaaaaa tactccgttt ttatcagaaa ttcttaagcc
      601 ctttaaaacc cgctgcttgt aggtattatc ctagttgttc tgagtatgcg ctttggcagt
      661 ttcaaaaaaa gaattttttt ctagcttttt tttctacttt ttttagagtt ttaagatgca
      721 accct
//
LOCUS       DAQSLY010000229          679 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.230, whole genome shotgun sequence.
ACCESSION   DAQSLY010000229 DAQSLY010000000
VERSION     DAQSLY010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.230"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>679)
                     /locus_tag="R2H98_001833"
     CDS             complement(<1..>679)
                     /locus_tag="R2H98_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024684.1"
                     /translation="LEYLINNYNHRINHTFTPKSQDEIQKELNLSKEDKIILELENMF
                     LNLCKGISADYAFMDFSYFFVGYDHTLDSKNNTLKSYPINQDKLIHKRSFKEYIEEYA
                     NTYFLNYYSKEFLNELDNQELNKDRLNYYLINYNKIPKNTEEENIQGILSKQKDIDIN
                     FVNFIDYKDYVYKNKDDFWEFSAKENSILWEKFLSKNTLKPFPLNFDCSLEEKLLYAK
                     DEQLENIL"
BASE COUNT          234 a           74 c           77 g          294 t
ORIGIN      
        1 agtatgtttt ctagttgttc atctttagca taaagaagct tttcttctaa agagcaatca
       61 aaatttaaag gaaaaggttt tagggtattt ttacttagaa atttttccca aagtatagaa
      121 ttttcttttg ctgaaaactc ccaaaaatca tctttatttt tataaacata gtctttataa
      181 tctataaaat ttacaaaatt gatatctata tctttttgtt tagaaagtat gccttgtatg
      241 ttttcttctt ctgtgttttt tggaattttg ttgtaattaa taagataata attaagtcta
      301 tctttgttta attcttgatt gtcaagttca tttaaaaact ctttagaata ataatttaaa
      361 aagtaagtat ttgcgtattc ttctatatat tctttaaaac ttcttttatg aattaattta
      421 tcttgattaa tgggataaga ttttaaagta ttatttttag aatctaaagt atgatcatat
      481 cctacaaaaa aataagaaaa atccataaaa gcataatcag cactgatgcc tttacaaaga
      541 tttaaaaaca tattttcaag ttctaaaatg attttatctt ctttgcttaa atttaattct
      601 ttttgtatct catcttgact ttttggagta aaagtatgat tgattctgtg attataattg
      661 ttaattaaat attctaagc
//
LOCUS       DAQSLY010000230          645 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.231, whole genome shotgun sequence.
ACCESSION   DAQSLY010000230 DAQSLY010000000
VERSION     DAQSLY010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.231"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            190..372
                     /locus_tag="R2H98_001834"
     CDS             190..372
                     /locus_tag="R2H98_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024685.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(508..582)
                     /locus_tag="R2H98_001835"
     tRNA            complement(508..582)
                     /locus_tag="R2H98_001835"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(547..549),aa:Glu,seq:ttc)
BASE COUNT          278 a           84 c           78 g          205 t
ORIGIN      
        1 aaagcttagt gggtaaaatt tctatttatt taacctaaaa taagatacat ttataatata
       61 ttttaataat aatttaaata tatataaaaa ttatattttt ttgaaatatt tttacaaaaa
      121 atatctattt gttgattttt aataattaca attaatttgc aactaaaaat tattcataag
      181 gaggaaaata tgaaaaaagt tgtactaatc tcagcattac taggtgcttt cgcagctaat
      241 gtttttgcag ctaatactcc aagcgatgtg aatcaaacac atacaaaagc tcatcattca
      301 aaagctaaag ctgataaaaa acatgaagct aaaactcaca aaaaaacaaa agagcaaaca
      361 ccagctcaat aatgcccagc cttgatataa gtctataata gacttatatc aaaagctatt
      421 cgtattctac aaaataaatt attaatattt attaaatttc aatagaaaaa atgaaaaaat
      481 tgttatttta aaagaaaaat taaaaagtgg tgacccatac gagactcgaa ctcgtgttac
      541 cgccgtgaaa gggcgatgtc ctaaccgcta gacgaatggg ccacttttaa ggagtaaaaa
      601 ataaaaatga aattgaatta tatatattta tttcttaaaa tttaa
//
LOCUS       DAQSLY010000231          642 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.232, whole genome shotgun sequence.
ACCESSION   DAQSLY010000231 DAQSLY010000000
VERSION     DAQSLY010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.232"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>642)
                     /locus_tag="R2H98_001836"
     CDS             complement(<1..>642)
                     /locus_tag="R2H98_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEE9024686.1"
                     /translation="CIDENNEILGNLYPLKQRNKVELLYYLFMRYNCLTSVGLSLKRD
                     VFEKLYPLPNSMCNYQDMKMHIDILNIGEIKILETQLIRYRRTRDKTNISAHNSITTT
                     RENLETEMLLDTYLKFDNIFLLEQIFHKEVNKTNIKPYQETLPFFLGIMALESDNIYK
                     KYWGYHKIMEFYKNDANAKILYEKYNFTFKDYLQLAKKCDTGDIFIKKYRKYK"
BASE COUNT          205 a           79 c           68 g          290 t
ORIGIN      
        1 ttttatattt tctatatttt tttataaaaa tatcccctgt atcgcatttt tttgctaatt
       61 gtagatagtc tttaaatgta aaattatatt tttcatataa aattttagca ttggcatcat
      121 ttttataaaa ttccattatt ttatgataac cccaatattt tttatatatg ttgtcagatt
      181 ctaaagccat tattcctaaa aaaaaaggca atgtctcttg ataaggtttt atatttgttt
      241 tatttacttc tttatgaaaa atttgctcta ataaaaatat attatcaaat tttaagtaag
      301 tatctaagag catttctgtt tctaggtttt ctcgagttgt tgtgatgcta ttatgagcac
      361 ttatatttgt tttgtctcta gttcttctgt atcttataag ttgtgtttca agtattttaa
      421 tttcgccaat atttaatata tcaatatgca tcttcatatc ttgatagttg cacattgaat
      481 ttggtaaagg atataatttt tcaaaaacat ctctttttaa agataatcca actgatgtta
      541 agcagttgta tcgcataaat aaataatata ataattctac cttatttctt tgttttaatg
      601 gatataagtt ccctaaaatt tcattatttt catctataca aa
//
LOCUS       DAQSLY010000232          633 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.233, whole genome shotgun sequence.
ACCESSION   DAQSLY010000232 DAQSLY010000000
VERSION     DAQSLY010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.233"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            27..347
                     /locus_tag="R2H98_001837"
     CDS             27..347
                     /locus_tag="R2H98_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AHH domain-containing protein"
                     /protein_id="HEE9024687.1"
                     /translation="MGSDNKQPPIQTHHIATNKSKKYTPKFQEILNSYDLKLNGDWNK
                     VKMPHRGRHPNEYHEYILEKMSKIDKIARGDKDKFIKEFEKLKEEVKNNPAILHKDYY
                     KERK"
     gene            347..>633
                     /locus_tag="R2H98_001838"
     CDS             347..>633
                     /locus_tag="R2H98_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024688.1"
                     /translation="MKYYKMMYNGQHNDVDNWINCIKPDIKNNDKYALLESKPITNWQ
                     TPSFEIDKDDGKILTDLISNVYNWRIVSPKFINLMQDLIKDCVQYLDVEIK"
BASE COUNT          289 a           73 c           96 g          175 t
ORIGIN      
        1 aatttgatag gataagatgg gaagggatag gaagcgataa caaacaacca ccaattcaaa
       61 cccatcatat tgctactaat aagagtaaaa aatatactcc aaaatttcaa gagatactta
      121 attcatatga tttaaaacta aatggagatt ggaataaagt taaaatgcca catcgcggaa
      181 gacatcctaa tgaataccat gaatatattc ttgaaaaaat gagtaaaatt gataaaatag
      241 caagaggaga taaggataaa ttcataaaag aatttgaaaa actaaaagaa gaagtcaaaa
      301 acaatcctgc tatacttcat aaagattact ataaggagag aaaataatga aatattataa
      361 aatgatgtat aatggacaac ataatgacgt tgataattgg ataaattgta ttaaaccaga
      421 tataaaaaat aatgacaaat atgcactttt agaatccaaa cctatcacaa attggcaaac
      481 acctagtttt gaaatcgata aagatgatgg taaaatactg accgatttaa tatctaatgt
      541 atataattgg cgtatagtct ctcctaaatt tataaattta atgcaagatt taattaaaga
      601 ttgtgtgcaa tatttagatg tagaaattaa aag
//
LOCUS       DAQSLY010000233          611 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.234, whole genome shotgun sequence.
ACCESSION   DAQSLY010000233 DAQSLY010000000
VERSION     DAQSLY010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.234"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>611
                     /locus_tag="R2H98_001839"
     CDS             <1..>611
                     /locus_tag="R2H98_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024689.1"
                     /translation="KEINFEKNIKALSGSEYDNLRKKLQDLKELKHFSFTQGKDNLDI
                     NIIKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGIGNGILYKILLQNQALKRI
                     IIFEKELELIFLAFNFVDFSKDLSLARLIIVHQDDVTLPKIEKIFRLVGDLFYRSYNL
                     HLANDFYEEYKEDILKLNKLNILTIKNHNLMHGNDPKDAMQGI"
BASE COUNT          244 a           88 c           81 g          198 t
ORIGIN      
        1 aaggaaatta attttgaaaa aaatatcaaa gctttaagtg gctctgagta tgataatcta
       61 cgcaaaaagc ttcaagatct taaagaactt aaacatttta gttttaccca aggaaaagat
      121 aatcttgata tcaatatcat caaaaaaaga aatttaaaaa aaatgtatca agatcccatc
      181 aaagaacttg aaaaaaattt agaatatttt aaagatttta cacgctatcc tgtgcttttt
      241 ttctatggaa taggaaatgg gattttatat aaaattctac ttcaaaatca agcacttaaa
      301 agaataatca tctttgaaaa ggaactagag cttatctttt tagcttttaa ctttgtcgat
      361 tttagcaagg atttaagctt agcaaggctt atcatcgtcc atcaagatga tgtaacttta
      421 cctaaaattg aaaaaatatt tcgccttgta ggagatttgt tttatcgttc ttataatcta
      481 caccttgcta atgattttta tgaagaatac aaagaagata ttttaaaact taacaaactc
      541 aatatcctaa ccataaaaaa ccataatctc atgcatggta atgatcctaa agatgccatg
      601 caaggcatag a
//
LOCUS       DAQSLY010000234          598 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.235, whole genome shotgun sequence.
ACCESSION   DAQSLY010000234 DAQSLY010000000
VERSION     DAQSLY010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.235"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..213)
                     /locus_tag="R2H98_001840"
     CDS             complement(<1..213)
                     /locus_tag="R2H98_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEE9024690.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDA"
     gene            complement(358..>598)
                     /locus_tag="R2H98_001841"
     CDS             complement(358..>598)
                     /locus_tag="R2H98_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEE9024691.1"
                     /translation="TNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFA
                     SESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          178 a          103 c          110 g          207 t
ORIGIN      
        1 agcatcatta ccattgttga tagcttgacc taaagtggct gcttgtgaac gcaaagaatc
       61 tgctatcgcc atccctgaag catcatctgc tgcggagttg attctaagac ctgaactaag
      121 tctgcttaaa gacttatcca gttctctagc attaacaact gaatttgcat gtgcgtttaa
      181 tgcaccgatg ttggtgttta tcctaaaacc cattttaaat cctttcaaaa tattgcatcg
      241 aaaagattaa agcaagaagt gttccaagtt ttagtttaat taaaaatttt agagtttaaa
      301 ataaaaaagc ctagtattaa actaggcttg gatttgtata tattgcagat tttcaaacta
      361 ctgtagtaat cttaaaacat tttgttgaac agaattagcc tgtgccatgg cataagagcc
      421 gctttgagct aagatatttg ctttagagta gtttgcactc tcacttgcaa agtctacatc
      481 acggatttgc gattctgctg ctttaacgtt tacttgagta acagtgatgt tgtttatagt
      541 tgatgtaact tgattttgca ctgaaccaat gtcggctctg atttgatcaa gatttgtt
//
LOCUS       DAQSLY010000235          585 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.236, whole genome shotgun sequence.
ACCESSION   DAQSLY010000235 DAQSLY010000000
VERSION     DAQSLY010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.236"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>585)
                     /locus_tag="R2H98_001842"
     CDS             complement(<1..>585)
                     /locus_tag="R2H98_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEE9024692.1"
                     /translation="ALKLNKFLEGTNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYF
                     LRELAQLKEIIYYAKSLEKRVNILSAPCSSGEEVYSLALLAAQNFIKDMYILGVDINS
                     SVIEKAKLGKYQGRTLQRLSESEKRRFFLESEDKFYTINKNELCTCKFELCNVFEEKF
                     SRLGKFDIIASRNMIIYFDHESKLKLMERFHRIL"
BASE COUNT          196 a          100 c           56 g          233 t
ORIGIN      
        1 tttaaaattc tatgaaatct ctccataagt tttagttttg attcatgatc aaaataaata
       61 atcatatttc tagaagctat aatatcaaat tttcccaatc ttgaaaattt ttcttcaaaa
      121 acattgcaaa gttcaaattt acaagtacaa agctcatttt tattaatagt ataaaattta
      181 tcttcgcttt ctaaaaaaaa ccttcttttt tcactctcgc tcaatcgctg taaagttctt
      241 ccttgatatt ttccaagttt tgctttttca atcacacttg aattaatatc aacgcctaaa
      301 atatacatat ctttaataaa attctgtgca gccaataatg ccaaagaata tacttcttct
      361 ccacttgaac aaggggcgct taggatattt actctctttt ctaagctttt ggcataataa
      421 attatttctt tcaattgagc caattctctt aaaaaataag tttcgcctat ggttacaaaa
      481 tctaaagttt cttgtttaag ttgtctattg ctttttaatt ttcccaaaaa ttcggaaaaa
      541 tttttagtat tagttccttc aagaaattta ttcaacttta aagct
//
LOCUS       DAQSLY010000236          547 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.237, whole genome shotgun sequence.
ACCESSION   DAQSLY010000236 DAQSLY010000000
VERSION     DAQSLY010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.237"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>547
                     /locus_tag="R2H98_001843"
     CDS             <1..>547
                     /locus_tag="R2H98_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024693.1"
                     /translation="CMLERTEITAEFFNHDFGEFDNGICFIIKSIAHPNAINYLTKKT
                     DNFTIVSTYASFIQYLKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAEN
                     GNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYLD
                     TKIYNCTEGGARIEGTIEKPFL"
BASE COUNT          200 a           81 c           85 g          181 t
ORIGIN      
        1 tgtatgctag aaagaactga aattactgct gagtttttta atcatgattt tggggaattt
       61 gataatggaa tttgttttat tatcaaatcc atagcacatc ctaatgccat aaattaccta
      121 accaaaaaaa ccgataattt tactatagtt tcaacctatg caagttttat acaatattta
      181 aaattagatt attttggata ttttaacatg ggatttagtg ttgcacatat ggcttgttat
      241 ctttccttac atttaaatca taaaaacatc atttttatag gacaggattt agcttatgct
      301 gaaaatggca attctcatcc tgatgattat caaaattcag ctagctatga aagcagaagg
      361 tatccgcatc tttacactct tgcttatggc ggaaaagaaa aaatcaaaac tcaccatgtc
      421 tggcttatgt ttaaacgaaa tttagagcaa gatgtgcaaa aaatacaaaa gtatttagat
      481 actaaaattt acaactgcac cgaaggtgga gcaaggatag aaggaaccat agaaaaacct
      541 tttttat
//
LOCUS       DAQSLY010000237          520 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.238, whole genome shotgun sequence.
ACCESSION   DAQSLY010000237 DAQSLY010000000
VERSION     DAQSLY010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.238"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            37..432
                     /locus_tag="R2H98_001844"
                     /pseudo
     CDS             37..432
                     /locus_tag="R2H98_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883939.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          243 a           69 c           52 g          156 t
ORIGIN      
        1 atataatatt catttatctt aaatatttag aaaaaaatgg atagagaatt atttataaca
       61 aggcttgctt ttataaacaa tgatgaaata gacacaatag ataaaaattc atccatagca
      121 tacttaaaag ccttatatca atgtgaaaat tccatagcta taaattataa tcaagaagag
      181 cttttcaccc aagctaccgc tataaacaat ctaggctata attctacttt cacaaaaatc
      241 ttcatcctag ataaagaaaa gctcaatgat acctatcttg atgctagaaa aaggctttat
      301 aaatctatca atactttaaa agaaaaaaga aatgaaaaaa taaaagatat ccaagactat
      361 ttaaataaag aaatttcctt acaagataat ctaaataatc aaagctttaa tactaaggaa
      421 aatgatgtta atttaatttt aaacgaagta tttaacatag agcaatttta tgataaaaat
      481 accaatacca tagtattaaa gacaaataat ataaaaatca
//
LOCUS       DAQSLY010000238          506 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.239, whole genome shotgun sequence.
ACCESSION   DAQSLY010000238 DAQSLY010000000
VERSION     DAQSLY010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.239"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            214..264
                     /locus_tag="R2H98_001845"
     CDS             214..264
                     /locus_tag="R2H98_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024694.1"
                     /translation="MKAYIHVYIFILKKIL"
     gene            275..>506
                     /locus_tag="R2H98_001846"
     CDS             275..>506
                     /locus_tag="R2H98_001846"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024695.1"
                     /translation="MTFEISNDDEEDIENEKYKECLKLFKDVKEENVRKYQNHYYCDK
                     LINNEKLEGEYAFIYWLIENQNSKKDFIQILND"
BASE COUNT          231 a           34 c           71 g          170 t
ORIGIN      
        1 agcttaaaaa tttaaatgaa gaaaactata agaaagctaa agatattatc cagcataaat
       61 ggagcaacat ctgcgaatat ataatagaag aattttttga tagttttgaa cacaaggaaa
      121 ttaaaatagg tgatataact tttatcggca ataaaataga agaaaatcgt gttaatcatg
      181 gtgtgtttat attttatcct attgattata agaatgaaag catatatcca tgtatatata
      241 tttattttaa aaaaaatact atgatattat tggtttgaca tttgaaattt caaatgatga
      301 tgaagaagat atagaaaatg aaaaatataa agaatgttta aaattattta aagatgtaaa
      361 agaagaaaat gttagaaaat atcaaaatca ctattattgt gataaattaa taaacaatga
      421 aaaattagaa ggagaatacg cttttattta ttggttgatt gaaaatcaaa attctaaaaa
      481 agattttatt caaattttaa atgatt
//
LOCUS       DAQSLY010000239          495 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.240, whole genome shotgun sequence.
ACCESSION   DAQSLY010000239 DAQSLY010000000
VERSION     DAQSLY010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.240"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>495
                     /locus_tag="R2H98_001847"
     CDS             <1..>495
                     /locus_tag="R2H98_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEE9024696.1"
                     /translation="KDYVDFHECEFEKTASFYGVRFEKAPNFSACYFKEPKAVNLINV
                     DIDKLDFRSAEDYIQDNYQDGNYKNAIKNNEKIQKDEKELYRIENEHKLRYAKNLKDS
                     FRVIKDVLINQNNTLEAQEWHKLELYAKEKELEIQLSKNKNDNLKKESKNQVYNPKDY
                     EKFNY"
BASE COUNT          230 a           40 c           76 g          149 t
ORIGIN      
        1 aaagattatg ttgattttca cgagtgtgaa tttgaaaaaa ctgctagttt ttatggagtg
       61 agatttgaaa aagctccaaa tttcagtgct tgttatttta aagaaccaaa agctgtaaat
      121 ttaatcaatg tcgatataga taagctagat tttagatcag ctgaagacta tatacaagat
      181 aattatcaag atggaaatta taaaaacgca attaaaaata atgaaaaaat acaaaaagat
      241 gaaaaagagc tttataggat tgaaaatgag cataaattaa gatatgctaa aaatttaaaa
      301 gattctttta gggttataaa agatgttttg ataaatcaaa ataatacttt agaagctcaa
      361 gaatggcata aattagaact ttatgcgaaa gagaaagaat tggaaattca attaagtaaa
      421 aataaaaatg acaatttaaa aaaagaatct aaaaatcaag tatataatcc taaggattat
      481 gaaaaattta attat
//
LOCUS       DAQSLY010000240          494 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.241, whole genome shotgun sequence.
ACCESSION   DAQSLY010000240 DAQSLY010000000
VERSION     DAQSLY010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.241"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>494
                     /locus_tag="R2H98_001848"
     CDS             <1..>494
                     /locus_tag="R2H98_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024697.1"
                     /translation="LSLERIPLTSEFFNNDFGEFDKDVLFVCISWIYPQTIKYLQKNN
                     RAFILTSRPSSFIENINLCTYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKD
                     GFSHTKDYKNLDKHEGHFRRDKGKFQCLAYGGNGKVESSEIWTMFRFSLQNTISKNIV
                     STTY"
BASE COUNT          171 a           66 c           80 g          177 t
ORIGIN      
        1 ctttctttgg aaaggattcc tttaacttct gaatttttta acaatgattt tggggaattt
       61 gataaggatg ttttgtttgt ttgtataagt tggatttatc cacaaaccat aaaatatctt
      121 caaaaaaata atagagcttt tatacttact tcaaggccat ctagttttat tgaaaatatc
      181 aatctttgca catatggcta tgtaggttat gggccaagtg ttgcacatat ggcttatgaa
      241 tttgcaactc atctaaatta taaaaacatc atttttatag gacaggattt agcttatgca
      301 aaagatggat tttcccatac taaagattat aaaaatcttg ataaacatga aggacatttt
      361 cgaagagata agggtaaatt tcaatgttta gcttatggag gcaacggaaa agttgaaagc
      421 tctgaaattt ggactatgtt tagattttct ttacaaaata ccatttcgaa aaatattgtt
      481 tcaaccacct acaa
//
LOCUS       DAQSLY010000241          491 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.242, whole genome shotgun sequence.
ACCESSION   DAQSLY010000241 DAQSLY010000000
VERSION     DAQSLY010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.242"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(1..491)
                     /locus_tag="R2H98_001849"
                     /pseudo
     CDS             complement(1..491)
                     /locus_tag="R2H98_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
BASE COUNT          191 a           71 c           50 g          179 t
ORIGIN      
        1 catgagaaac aatagaattt ttaaaatttt ctgctaattt cttatttaac tccaaaacat
       61 cttcatgaaa tctttcataa taatgactca tcagttctaa aaaataaatt ctagaaaatt
      121 gaaagaaagg tttgctagag caaaaattag aaaaaaattc tatatccaaa gaacttgttt
      181 gcaaaatcat caatcttgca ttttgcaatt catgtgaaaa atctaagata tgaaacatta
      241 tccaaatgat ttctatatct ttttcaaaaa caacaatatg ttgatgattt ttattttgca
      301 ataaagcttt aaataaaact ccatttccaa aaccataaaa atacaataca ggataaagta
      361 ggtatttgtc attataagta tttagcatag tttgcaattc tttaatggga tcttgataaa
      421 gtaaattttc attatacccc ccccccatta ttttttatac ttgtatcttt tagattgata
      481 tctagattat c
//
LOCUS       DAQSLY010000242          476 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.243, whole genome shotgun sequence.
ACCESSION   DAQSLY010000242 DAQSLY010000000
VERSION     DAQSLY010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.243"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>476)
                     /locus_tag="R2H98_001850"
     CDS             complement(<1..>476)
                     /locus_tag="R2H98_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEE9024698.1"
                     /translation="YEAYLFFFDNAFLIELIYKYKDFFKLDQKFQNYEIFWVKNDKIL
                     QGILESFSPHFEENTQILDPIVSLKFEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQ
                     LFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLDEKRLQKAKILLKF"
BASE COUNT          194 a           73 c           40 g          169 t
ORIGIN      
        1 aaatttaagt aaaatctttg ctttttgcaa ccttttttca tctaaccatt ttttaggact
       61 ttgtccaaaa catttcttaa attctttaga aaaagttgct aaatctaatt tcgcaaaatt
      121 agacatttca tttacgctta aaaattctct accacaatac tcaaaaagct gggaaagatc
      181 aaggcgaaat tcttttaaaa ttcctgataa aaaactaata aaataaatat tcttatttaa
      241 aagcaaatgt aaaaaaatct cttcaaattt caaactcact ataggatcta aaatttgcgt
      301 attttcttca aaatgcggtg aaaaactttc caaaattcct tgcaaaatct tatcattttt
      361 tacccaaaaa atttcatagt tttgaaactt ttgatctagt ttaaaaaaat ctttatactt
      421 ataaataagc tcaattaaaa atgcattgtc aaaaaaaaat aaataagctt cataaa
//
LOCUS       DAQSLY010000243          460 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.244, whole genome shotgun sequence.
ACCESSION   DAQSLY010000243 DAQSLY010000000
VERSION     DAQSLY010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.244"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>460
                     /locus_tag="R2H98_001851"
     CDS             <1..>460
                     /locus_tag="R2H98_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEE9024699.1"
                     /translation="DFCIIGKNINMYLVDDEDAGFIFELRSDVVKNKFLNKIDNDIKK
                     QREWIRLYKKREKNKKEFYFTIRNKNNEKLGLVRLYDFIDDSFCWGSFIIKHGVAFYI
                     SIEVVMNVYEFAFYNLGFNASHFDVRKDNDRVVAFHKKFGAKIIKEDVDN"
BASE COUNT          183 a           29 c           84 g          164 t
ORIGIN      
        1 gtgatttttg cataattgga aaaaatatta atatgtattt agttgatgac gaagatgctg
       61 gatttatttt tgaactcaga agtgatgttg taaaaaataa atttttaaac aaaatagata
      121 atgatataaa aaagcaaaga gaatggatta gattatataa gaagagagaa aaaaataaaa
      181 aagaatttta ttttacaatc agaaataaaa ataatgaaaa gttaggccta gttagattgt
      241 atgactttat tgacgattct ttttgctggg gaagttttat aataaaacat ggggttgcct
      301 tttatatatc catagaggtt gttatgaatg tgtatgaatt cgcattttat aatttaggtt
      361 ttaatgctag tcattttgat gtaagaaaag ataacgatag agttgtagcc tttcataaaa
      421 aatttggtgc taaaattatt aaagaagatg ttgataattt
//
LOCUS       DAQSLY010000244          457 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.245, whole genome shotgun sequence.
ACCESSION   DAQSLY010000244 DAQSLY010000000
VERSION     DAQSLY010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 457)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.245"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            65..445
                     /locus_tag="R2H98_001852"
     CDS             65..445
                     /locus_tag="R2H98_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024700.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FRKFYKLKIDGIILKDNIDNFPKN"
BASE COUNT          179 a           25 c           69 g          184 t
ORIGIN      
        1 ttgcttggta acgattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagtagg gttttaatga ttgttgataa
      361 attagagaat tttagaaaat tttataaatt aaaaatcgat ggaattattt taaaagataa
      421 tatagataat tttcctaaaa actgataaat tcttttg
//
LOCUS       DAQSLY010000245          442 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.246, whole genome shotgun sequence.
ACCESSION   DAQSLY010000245 DAQSLY010000000
VERSION     DAQSLY010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.246"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>442)
                     /locus_tag="R2H98_001853"
     CDS             complement(<1..>442)
                     /locus_tag="R2H98_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEE9024701.1"
                     /translation="ILDYLFDEYGLSLKDPKYNFYHSDMKYIKEANDKYILMEEVEDD
                     PCIYQNALIYDYILSADNPNSQIIKYLVNRGAKFEVHDEGAYGWTPMHFWVMQNNYKL
                     LELAIKGGANVDMQTLLDPKSEYNETLLFEAVKEAETYRVTQLL"
BASE COUNT          150 a           76 c           50 g          166 t
ORIGIN      
        1 attaaaagct gtgtaaccct ataggtttct gcttctttta cagcttcaaa taaaagggtt
       61 tcattgtatt cgctttttgg atcaagcaag gtttgcatat ctacattagc tcctccttta
      121 atagctagtt ctaataattt ataattattt tgcattaccc aaaaatgcat aggagtccaa
      181 ccataagccc cttcatcatg cacttcaaat ttagctccac gattgactag atacttaatg
      241 atttgagaat ttggattatc agcacttaat atataatcat aaattagagc gttttgataa
      301 atacaaggat catcttctac ttcttccatt aagatatatt tatcattagc ttctttaata
      361 tatttcatat cactatgata aaaattatat ttaggatctt ttaaacttaa tccatactca
      421 tcaaataaat aatctaaaat ag
//
LOCUS       DAQSLY010000246          436 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.247, whole genome shotgun sequence.
ACCESSION   DAQSLY010000246 DAQSLY010000000
VERSION     DAQSLY010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.247"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>436
                     /locus_tag="R2H98_001854"
     CDS             <1..>436
                     /locus_tag="R2H98_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEE9024702.1"
                     /translation="KKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVY"
BASE COUNT          173 a           41 c           62 g          160 t
ORIGIN      
        1 aaaaaaatca aaaatgaact ttataaatct tttgaagaaa tcaagatgaa attaaaagat
       61 tttataaaca tacttgaaag agaaattttg ctttttaaag cagaattttc aaacatacaa
      121 aaagatcaca ttttccaaag tgataaaaat tttagtgaat taagagcttt ttgcaatgca
      181 agtgatgagt actttttgaa agattttaag gagcttttat ttaaaagtat tttagagctt
      241 gatttatttt ttgaaaaatt aaatcttaag gcttttacaa attatgaaaa tgctacgaaa
      301 ctaagccttg cattttttag tcgtaaaatc aatgaaagtc gtgttcttta tgagcttgat
      361 agttctgaat tcgtactttt ttatcctaaa aaaagcgaaa tttatgaaag agttttaaat
      421 gaattaaatg tttatg
//
LOCUS       DAQSLY010000247          431 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.248, whole genome shotgun sequence.
ACCESSION   DAQSLY010000247 DAQSLY010000000
VERSION     DAQSLY010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.248"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>431)
                     /locus_tag="R2H98_001855"
     CDS             complement(<1..>431)
                     /locus_tag="R2H98_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024703.1"
                     /translation="IMLDKELAKLSIDITFFNIIKQLFPFTEFFMSQPDFFKKMILFF
                     INSSLDKKYYGNKLFSSFKAHFFKELGIFYALSPKGRFIKINPKSKKSLNKLFLYQIG
                     TNYYYFNQLEYASELKKSKSFSRLDKAKQIHLISKVKKQLA"
BASE COUNT          165 a           48 c           44 g          174 t
ORIGIN      
        1 atagctaatt gtttttttac ttttgatatc aaatgaattt gcttagcttt atctaatctt
       61 gaaaaactct ttgacttttt taattcactt gcatattcta attgattaaa ataataataa
      121 tttgttccta tttgatataa aaaaagctta ttgagtgatt ttttactttt tggattaatt
      181 tttataaaac gccccttagg gctaagtgca taaaatatcc ctagttcttt aaaaaaatgt
      241 gctttaaaac tagaaaataa tttattacca taatactttt tatctaagct tgaatttata
      301 aaaaataaaa tcattttttt aaaaaaatca ggctgactca taaaaaattc tgtaaaagga
      361 aaaagttgct taatgatatt aaaaaaagta atatctatag ataattttgc aagttcttta
      421 tcaagcataa t
//
LOCUS       DAQSLY010000248          407 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.249, whole genome shotgun sequence.
ACCESSION   DAQSLY010000248 DAQSLY010000000
VERSION     DAQSLY010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.249"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>407)
                     /locus_tag="R2H98_001856"
     CDS             complement(<1..>407)
                     /locus_tag="R2H98_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024704.1"
                     /translation="DIVFICAGVVHPKAIEYLKGGNRKYLIMPRYLYFPIYIKLNKYF
                     YFLYNTPSVAHMSYFLSALLNHKNIILIGQDLAYAKNGNSHPDDYQNSANYESQMYEH
                     ILTKAYGGKEEVKTHEAWIFFKQILETMIIKYS"
BASE COUNT          145 a           59 c           55 g          148 t
ORIGIN      
        1 atactatact taataatcat tgtttctaag atttgcttaa aaaatatcca agcttcatga
       61 gttttaactt cttctttccc gccataagct ttagttaaaa tatgctcata catttgactt
      121 tcatagttag ctgagttttg ataatcatca ggatgagaat taccattttt tgcataagct
      181 aaatcttgtc ctatgagaat gatattttta tgattgagta gagccgaaag aaaatatgac
      241 atatgtgcaa cgctaggtgt gttatataaa aagtaaaaat atttattaag ctttatatag
      301 attggaaaat ataaatatct tggcatgata agatattttc tatttccacc ctttaaatat
      361 tcaatcgctt ttggatgaac aacaccagca caaataaata caatatc
//
LOCUS       DAQSLY010000249          406 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.250, whole genome shotgun sequence.
ACCESSION   DAQSLY010000249 DAQSLY010000000
VERSION     DAQSLY010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.250"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>406
                     /locus_tag="R2H98_001857"
     CDS             <1..>406
                     /locus_tag="R2H98_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEE9024705.1"
                     /translation="YNVEKYLDDFFKSIINQRLDFKNNIHLICVDDGSTDNSANIIKK
                     YQKKYPKNIIYLYKENGGQASARNLGLKYLKENNLNIPWVTFTDPDDFLDRDYFYEVD
                     SFLKNQNNIAMVATNIIFYREKRKILYKDTHAL"
BASE COUNT          165 a           34 c           59 g          148 t
ORIGIN      
        1 tataatgtgg aaaaatattt agatgatttt tttaaatcta taattaatca aagattggat
       61 tttaaaaata atattcatct aatttgcgtt gatgatggtt ctactgataa ttcagctaat
      121 atcattaaaa aatatcaaaa aaaataccca aaaaatatta tctatctata caaagaaaat
      181 ggtggtcaag caagtgcgag gaatttgggt ttaaaatatt taaaggaaaa taatttaaat
      241 attccttggg taacctttac tgatcctgat gattttttag atagggatta tttttatgag
      301 gtagatagtt ttttaaaaaa tcaaaataat atagctatgg tggctacaaa tattattttt
      361 tatagggaaa aaagaaagat tttatataaa gatactcatg ctttaa
//
LOCUS       DAQSLY010000250          400 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.251, whole genome shotgun sequence.
ACCESSION   DAQSLY010000250 DAQSLY010000000
VERSION     DAQSLY010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.251"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>400
                     /locus_tag="R2H98_001858"
     CDS             <1..>400
                     /locus_tag="R2H98_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEE9024706.1"
                     /translation="KAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEEL
                     DNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKATIGATQSSKIGLTRFETGGRIS
                     SSGEVQFTLKNYNGIDDFQFQKVVISTSVGT"
BASE COUNT          157 a           67 c           67 g          109 t
ORIGIN      
        1 ataaggctat ggatgagcaa cttaaaatct tagatacaat taaaactaag gcaactcaag
       61 cagctcaaga tggacaaagt ttaaaaacaa gaaccatgct tcaagcagat atcaaccgtt
      121 taatggaaga acttgataat atcgcaaata ctacttcatt taacggtaaa caacttttaa
      181 gtggaaattt tatcaatcaa gaatttcaaa tcggcgcaag ttcaaatcaa actgtaaaag
      241 ctaccatagg agcaactcaa tcttctaaga taggtttaac acgctttgaa acaggaggaa
      301 gaatttcatc tagtggcgaa gtgcaattta ctcttaaaaa ctacaacggt atagatgatt
      361 ttcagtttca aaaagttgtg atttcaactt cagttggaac
//
LOCUS       DAQSLY010000251          400 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.252, whole genome shotgun sequence.
ACCESSION   DAQSLY010000251 DAQSLY010000000
VERSION     DAQSLY010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.252"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>400
                     /locus_tag="R2H98_001859"
     CDS             <1..>400
                     /locus_tag="R2H98_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEE9024707.1"
                     /translation="FFDFLYTISKTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLT
                     KKWKELERNYDENDLEEQARKYGISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLN
                     PSLVEDLKIQGFIQNLTQKPFVIGEENFKNE"
BASE COUNT          161 a           37 c           70 g          132 t
ORIGIN      
        1 attttttgat tttttatata ctatatctaa aactttgcaa ataagtaagg ataaaaagat
       61 aagagatttg gctaaggtga cttcgattag aatttctaaa actatggata gtgaaagtat
      121 ttacttgctt actaaaaaat ggaaagagct tgaaagaaat tacgatgaaa atgacttaga
      181 agaacaagct cgcaaatatg gtattagtaa atatgatgat tatgatagcg tgattaaaaa
      241 actcttagtt aaacttgaag agcgtagtta tgagcacttt agtgaattat tatgcttggg
      301 tttaaatcct tcattggtag aagatttaaa aattcaaggt tttatacaaa atttaacaca
      361 aaagcctttt gtaataggcg aagaaaattt taaaaatgaa
//
LOCUS       DAQSLY010000252          398 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.253, whole genome shotgun sequence.
ACCESSION   DAQSLY010000252 DAQSLY010000000
VERSION     DAQSLY010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.253"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..176
                     /locus_tag="R2H98_001860"
     CDS             <1..176
                     /locus_tag="R2H98_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEE9024708.1"
                     /translation="KSLLEFSQIPLYAIGGINAQNIENFKDINVVGVCMREILMKEKD
                     LKKYLLECRQNLR"
     gene            173..>398
                     /locus_tag="R2H98_001861"
     CDS             173..>398
                     /locus_tag="R2H98_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEE9024709.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFL"
BASE COUNT          153 a           49 c           55 g          141 t
ORIGIN      
        1 taaaatcctt gcttgaattt agtcaaattc cactttatgc tataggcggt atcaatgctc
       61 aaaatataga aaattttaaa gatataaatg tagtaggtgt ttgcatgcgt gaaattttaa
      121 tgaaagaaaa agatcttaaa aagtatcttt tagaatgtag gcaaaattta cgatgaataa
      181 aattctttct ttaccagaag atttaaagca attaaaaggt gtcaattata aaaaaattaa
      241 atcttgcact tttgctaaat atacacaaac ggatacttcg cattctactt ttgttaatgt
      301 aggaagtcat cttttaactt ttgttcgcaa aggatataaa attttacaca ctgcatcaaa
      361 agattataag attaactctt atgaaacttt gtttttaa
//
LOCUS       DAQSLY010000253          385 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.255, whole genome shotgun sequence.
ACCESSION   DAQSLY010000253 DAQSLY010000000
VERSION     DAQSLY010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.255"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(6..81)
                     /locus_tag="R2H98_001862"
     tRNA            complement(6..81)
                     /locus_tag="R2H98_001862"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(46..48),aa:Lys,seq:ttt)
     gene            complement(86..162)
                     /locus_tag="R2H98_001863"
     tRNA            complement(86..162)
                     /locus_tag="R2H98_001863"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(126..128),aa:Asp,seq:gtc)
     gene            complement(214..289)
                     /locus_tag="R2H98_001864"
     tRNA            complement(214..289)
                     /locus_tag="R2H98_001864"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(254..256),aa:Val,seq:tac)
     gene            complement(296..371)
                     /locus_tag="R2H98_001865"
     tRNA            complement(296..371)
                     /locus_tag="R2H98_001865"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(336..338),aa:Arg,seq:tct)
BASE COUNT          111 a           97 c           93 g           84 t
ORIGIN      
        1 aaaaatggtg tcccgtgttg gattcgaacc aacggccccc tccttaaaag ggagatgctc
       61 taccggctga gctaacgaga caatatggcg cagcggacgg ggctcgaacc cgcgacctcc
      121 gccgtgacag ggcggcattc taaccagctg aactaccgct gcatccaaag taaagaagta
      181 gagattataa aacctattta tgattttata aaatggtggt cactataaga ctcgaactta
      241 tgacatccac cttgtaaggg tggcgctcta ccaactgagc taagcgacct atgattggcg
      301 acccctagag gatttgaacc tctgtttcca cacagagaga gtgttgtcct gggccactag
      361 acgaaagggt cataacccta acaat
//
LOCUS       DAQSLY010000254          383 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.256, whole genome shotgun sequence.
ACCESSION   DAQSLY010000254 DAQSLY010000000
VERSION     DAQSLY010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.256"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..>383
                     /locus_tag="R2H98_001866"
     CDS             <1..>383
                     /locus_tag="R2H98_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEE9024710.1"
                     /translation="KDQKNQLKDYINFVRKNIKNIKDCYKNILTIYLHQDECASPSDY
                     SLGNFTIKTNLIKDKNENNVSYYLKMDYIWIKEWIDECIKIYEEKSTKDQKFILDIQN
                     IIFILNQYKSILQWYMTDEYTQRDD"
BASE COUNT          176 a           27 c           56 g          124 t
ORIGIN      
        1 aaaagatcaa aaaaatcaat tgaaagatta tattaatttt gtaagaaaaa atatcaaaaa
       61 tataaaagat tgttataaaa acatattgac tatatatttg catcaagatg agtgtgctag
      121 tcctagtgat tatagtttgg gaaattttac aataaagaca aatttgatta aagataaaaa
      181 tgaaaataat gttagctatt atttgaagat ggattatata tggattaagg aatggattga
      241 tgagtgtata aaaatatatg aagaaaaatc aaccaaagat caaaaattta ttcttgatat
      301 acaaaacatt atttttattc taaatcaata caaaagtatt ttacaatggt atatgacaga
      361 tgagtatact caaagagatg atg
//
LOCUS       DAQSLY010000255          381 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.257, whole genome shotgun sequence.
ACCESSION   DAQSLY010000255 DAQSLY010000000
VERSION     DAQSLY010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.257"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            <1..378
                     /locus_tag="R2H98_001867"
     CDS             <1..378
                     /locus_tag="R2H98_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEE9024711.1"
                     /translation="NHFKTFSTAKQRIQNQLPYRLGQAMIINSKNFLGYIFLPYILLS
                     IVILYKQEQKNYKHKIKLNPESTLPPLETYPDYNEALKEKRCFTYKLGLALIEANKKW
                     YGGGYIKLWFKIKKLKYEFKTKN"
BASE COUNT          165 a           43 c           47 g          126 t
ORIGIN      
        1 aatcatttta aaactttttc aacagctaaa caaaggattc aaaaccaact tccatataga
       61 ttaggccaag caatgataat aaattctaaa aattttttag gttatatatt tttaccgtat
      121 attttattaa gtattgttat attatataaa caagagcaaa aaaattataa acataaaatt
      181 aaattaaacc cagaatcaac cttacctcca ttagaaactt atcctgatta taatgaagct
      241 ttaaaagaaa aaagatgctt cacttataaa ttaggacttg ctttaattga agctaataaa
      301 aaatggtatg ggggggggta tatcaaattg tggtttaaga ttaaaaaatt aaaatatgaa
      361 tttaaaacta agaattaggt t
//
LOCUS       DAQSLY010000256          380 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.258, whole genome shotgun sequence.
ACCESSION   DAQSLY010000256 DAQSLY010000000
VERSION     DAQSLY010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.258"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(<1..>380)
                     /locus_tag="R2H98_001868"
     CDS             complement(<1..>380)
                     /locus_tag="R2H98_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEE9024712.1"
                     /translation="DEFLACTLRSLKYLTFALIQDENGINFKKDDIFLYENPNKELLE
                     NLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFEDNLEILTLAFHLFDFS
                     EELKKEQLILFYTPNINTAQLTTL"
BASE COUNT          140 a           40 c           54 g          146 t
ORIGIN      
        1 aaaagtgtgg tgagttgtgc tgtattaata tttggagtat aaaaaagtat tagttgttct
       61 ttttttaatt cttcgctaaa atcaaataaa tgaaaagcta aagttaaaat ttcaagattg
      121 tcttcaaaaa tgataatgtg tttatgttgt ttgtttttac acaaagtttt ataaaacatt
      181 ccatttccaa agccataaaa aaacaaaaca ggatatttgt tatattcggt tttaaacaga
      241 gtaaggtttt ctaaaagctc tttattggga ttttcataaa gaaaaatatc atctttttta
      301 aaatttattc cattttcatc ttggataagt gcaaaagtta agtatttaag tgatcttagt
      361 gtacaagcta aaaactcatc
//
LOCUS       DAQSLY010000257          373 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.denovo.259, whole genome shotgun sequence.
ACCESSION   DAQSLY010000257 DAQSLY010000000
VERSION     DAQSLY010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.denovo.259"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            94..>373
                     /locus_tag="R2H98_001869"
     CDS             94..>373
                     /locus_tag="R2H98_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase SAM-like domain-containing
                     protein"
                     /protein_id="HEE9024713.1"
                     /translation="MKLKNTTISEDLERWIETYLKHIQALSYSNNTSLLYRRILLEFV
                     EYSLDYQDEMQINDIKMTFLVNFLNYLENNSKNGNKLSKKTKITYLRVL"
BASE COUNT          175 a           32 c           36 g          130 t
ORIGIN      
        1 acaaataatg caaaaatata aatattttta tgatataatt taaaatatat aacataatat
       61 ttaattatgt tataaaaaaa ggatataaat aaaatgaaac ttaaaaatac tacaataagt
      121 gaagatttag agcgttggat agaaacttat ttgaaacata ttcaagcatt atcctattca
      181 aataatactt ctttacttta taggcgtatt ttactagaat ttgtagaata ttctttagat
      241 tatcaagatg aaatgcaaat aaacgatata aaaatgactt ttttagtcaa ttttcttaat
      301 tatttagaaa ataattcaaa aaatggcaat aaactatcaa aaaaaacaaa aataacttat
      361 ttgagagtat taa
//
LOCUS       DAQSLY010000258         6482 bp    DNA     linear   BCT 01-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate SHI006313
            SAMN11269027-rid18400653.guided.088, whole genome shotgun sequence.
ACCESSION   DAQSLY010000258 DAQSLY010000000
VERSION     DAQSLY010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN11269027
            Sequence Read Archive: SRR8797165
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 15-JUN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001780584.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001780584.1
            Genome Coverage       :: 46x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 06/15/2023 22:32:27
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,877
            CDSs (total)                      :: 1,838
            Genes (coding)                    :: 1,779
            CDSs (with protein)               :: 1,779
            Genes (RNA)                       :: 39
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 33
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 59
            CDSs (without protein)            :: 59
            Pseudo Genes (ambiguous residues) :: 0 of 59
            Pseudo Genes (frameshifted)       :: 49 of 59
            Pseudo Genes (incomplete)         :: 10 of 59
            Pseudo Genes (internal stop)      :: 14 of 59
            Pseudo Genes (multiple problems)  :: 14 of 59
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6482
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN11269027-rid18400653.guided.088"
                     /isolate="SHI006313"
                     /isolation_source="stool sample"
                     /host="Homo sapiens"
                     /db_xref="taxon:197"
                     /country="Peru: Iquitos"
                     /lat_lon="3.45 S 73.15 W"
                     /collection_date="2013"
                     /collected_by="Margaret Kosek"
     gene            complement(1..1155)
                     /locus_tag="R2H98_001870"
                     /pseudo
     CDS             complement(1..1155)
                     /locus_tag="R2H98_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1335..2111
                     /gene="surE"
                     /locus_tag="R2H98_001871"
     CDS             1335..2111
                     /gene="surE"
                     /locus_tag="R2H98_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEE9024714.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            2101..2760
                     /locus_tag="R2H98_001872"
     CDS             2101..2760
                     /locus_tag="R2H98_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HEE9024715.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            2744..3201
                     /locus_tag="R2H98_001873"
                     /pseudo
     CDS             2744..3201
                     /locus_tag="R2H98_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(3264..3644)
                     /locus_tag="R2H98_001874"
     CDS             complement(3264..3644)
                     /locus_tag="R2H98_001874"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEE9024716.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(3641..4489)
                     /locus_tag="R2H98_001875"
     CDS             complement(3641..4489)
                     /locus_tag="R2H98_001875"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEE9024717.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(4500..5324)
                     /gene="panB"
                     /locus_tag="R2H98_001876"
     CDS             complement(4500..5324)
                     /gene="panB"
                     /locus_tag="R2H98_001876"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEE9024718.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAISRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            5544..6317
                     /locus_tag="R2H98_001877"
     CDS             5544..6317
                     /locus_tag="R2H98_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEE9024719.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
BASE COUNT         2294 a         1013 c         1006 g         2169 t
ORIGIN      
        1 ccatagtttg catacttgct aaaaattgtg gtatatagac taaacacccc gccatagctg
       61 caaagaaaat aaccatataa agattatttg aagtaaaata tccaataatc ataaagaaaa
      121 taataaccat ggcgcctata gcaggaggca ttctatagcc tttaaaaatt ttatctgaaa
      181 tatatcctgc aagtaaagta gaaggtatag cagcccattc aaaaagccaa aaggcaatac
      241 ctatttgttc tttattaaag ccttttgttt ctagcaagta aataggaagc caagaaataa
      301 gcccaaaacg caccatataa acaaaagtat ccatccaagc cacataccaa gcatttttgt
      361 ttttaagtac ataatgataa aaaatttcaa aactgcttaa atttggagtt tctatagctt
      421 tgatttcttc tgttttaatc cctcgcattt cattgatttc agtaatatca accaaacctt
      481 catttttagg atttccttta actgcataaa gcgcataaag actaatgata actgcacaag
      541 cagcaggagt ataaaaatga ttcatgtgcc aatatgtttc gttaaaattt gccatactca
      601 cacccaataa tgctgccaaa gcaaaacctg aaagcgaaac tataggagca actatcccgc
      661 ctcctatatt atgtgagata ttccaaacgg ccgtgtaaat tccccgctct tttttaggat
      721 accagtttgc aagagtgata aaagaaggac ctacccccat accttgaaaa accccaagcg
      781 cgataacaaa acctacataa gcgtaaaaag aatttgaaaa accaagtaaa acatttacaa
      841 gagcacataa aataagacct aaagccatga ttttttagga tcagctttgt cgcttataac
      901 gctcattgca cccttgctaa tcccgtaagc tataagcatt gagcctgtga ttgttccgat
      961 gtctgattta ctgagattaa gttgattttg tataaatgga gttgaaagag tgatattatt
     1021 tcgcacaaga taatatccca tatatcctat aaaaacccca cttaaactcc aagttctcat
     1081 tttgtaatat ctaggtaaaa tttcctaaag aggaaattta atagcttttg ccttaggttt
     1141 gaaaaaatca aacatattta aaccatcctt actaacttta tatttttata gtttaaataa
     1201 tgttaatcga tataaaataa aaaaataatt aaaaataata cgaaatttat ataatttaaa
     1261 aattaaaatt ttatactatg aagctttaaa aaaatatgtt aaaatccaga tttttatctt
     1321 ttgcaaggaa gacaatgaaa gaaattctta tcactaatga cgatggttat gaaagcgaag
     1381 gacttaaaaa actcattaag atgttaacaa aagaatttaa agccaagatc accatagtag
     1441 ctcctgctag tgaaaaatca gcttgttcgc actctataac cctaaccaaa cctttgcgtt
     1501 ttgttaaagt gggaaaaaga ttttacaaac ttgatgatgg cactccagca gattgtgttt
     1561 atcttgcttt gcatgcttta tacaaaaagc gtttgcctga tcttgtaata agtgggatta
     1621 ataaaggtgc taatgtaggc gaggatatta cctactcagg aacttgcgca ggagctatgg
     1681 aggcggtttt acaaggaatt cctgctatcg ctctttctca attttataaa aaaagcgaaa
     1741 aagaactaga ctataaaaat gctttacaaa ttaccaaaaa aatcattcaa aatatttttg
     1801 ataaaggttt tcctttggaa aaaaaagaat ttttaaatat caattttcct gcaaaatcaa
     1861 aaatcaaagg cattaaaatt tgtaaagcag gcaaaagggt ttataatttt gaagcccatt
     1921 caaatgtcaa tccgagagga gtagagtact attggcttgc agcggcgaat ttagactttg
     1981 aagatgagaa aaatagcgat attgccttac ttaaaaaagg ctacgctaca ataacaccta
     2041 taatgctgga tcttacagct tatgaaagaa tgaaaaaagt taaaaaatgg ttaaaggcaa
     2101 atgatgaatg atagatttac acgtataaaa tggctagttg gagaagaaaa atttcaaaaa
     2161 atttcacaaa caaaagtttt ggtttgcgga cttggtggag tgggtggaat ttgcgttgat
     2221 gcgctttatc gtagtggttt taaaaacctt actttaatcg atgcggataa atttgaaatc
     2281 actaatcaaa atcgccaaat tcatagcgaa aatataggcg aagaaaaggc taaagtattt
     2341 gaaagaattt ataaggttaa aggtatagtc agtaaaatcg atgaaaattt tttaaaaaat
     2401 tttgatttaa gcgagtttga tcttatcata gatgccattg atgatattcc tgcaaaagta
     2461 gctttggctc atcttataga ttttaaaaaa caaattttta tctcctcaac aggtggagct
     2521 agaaagcttg atccaacacg cattaaaact acaagtattt ttaaaactca cggcgatgct
     2581 ttagcgaaaa aatttcgtta cgagcttaga aaatcaggct ttaagggaaa ttttgatgtg
     2641 gtattttcag atgaggaagc gcattgtaaa gatcttggat cttttatggg tgtgactgca
     2701 tcttttggtt tagccctagc cagcttggca ttaagaaaag ttcttgctaa gaaaagctga
     2761 tattaaaatt taaatgcttg tttgtcgctt tttgagcaaa gcgtaaaaac actttgtgct
     2821 aaggattata caaaagatca aatttgtgct tggattaaaa ttgatagaca acaatgggaa
     2881 gaaaaattta aatatgatga gatctttgtc tatgaaaaaa gaggaaaaat cgcaagtttt
     2941 ataagtgtta aacaagagca gaaattgctt gatttgcttt ttactcatcc tgattttgtt
     3001 agacaaggtt tagcacaaaa tttacttgat tttattttaa aaacttattt gcataatgaa
     3061 atttacactt tcgcatcctt aagtgctaaa gattttttct taaaaaatgg ttttgaactt
     3121 ataagggaaa acaaggttat caaagaggga caaaatttaa aaaaattttt aatgaaaaaa
     3181 gatgtggttt ataaaaacta gaagttaaga taagcaaaaa taatggatta aaagatagaa
     3241 aaaattacaa aaatagctag atgttagaaa atagctccgt gtttttcata atttgttatt
     3301 tttgtagcag tgttattttc atccacaaaa acaacttttg gtttaaatgt ttttgcttct
     3361 tcttcattaa aatcagcata agacatgatg atcaccttat ctcccacttc tgcaagacga
     3421 gccgcagcac catttaagca tacaactcct tcttcttgcg tggctatggt ataggtttca
     3481 aatctagcgc cattattgac attgactact tgaacttttt cgtattctaa aattccactc
     3541 gcttgcaata atttttcatc tatacttata cttcctatat aatcaagcct agcttctgtt
     3601 acgcttgcgc gatgtatttt tgatttgagt aaagtgatat tcattttaat ccttgtacta
     3661 aaaaattatc aatgagtctt gtttttccaa caaaagcagc caccgctcct aaaacattat
     3721 cagtgatatt ttcgatattt tccatggtgt taaaatcgac taattctata taatcgattt
     3781 tgattagttt ttctttttct aaaatatctt tcatagcttg gatgatctta gaagtatttt
     3841 tttctccctc tcggactaat ttttcagcca aaaaaatgct ttgagatata gctagtgacg
     3901 cttttctttc ttctttgcta agatatacat ttctagagct tttagctaag ccatcttctt
     3961 ctctaatgat aggacaaatt tgaattttta aatcaaaatt taaatcatca accatatgcc
     4021 taacgactac gcattgctgc gcgtcttttt gccccatata gactatatca gggtttagga
     4081 tattaaaaaa tttagttaaa accgtgcaaa cgcctctaaa atgccccagt cttttagctc
     4141 cacaaagctt atccgtgatc gtgttcatat ccacataggt gctaaaattc ttaagataca
     4201 tttgagttgc atcggggata aaaaccatat caacgccatt atcttgacac attttaatgt
     4261 cgcgttctaa atctcttgga taactagaaa aatcttcatt aggcccaaat tgcataggat
     4321 ttacaaagat acttactata accttatctt gtgttttggc atgtttgact aaacttaaat
     4381 gtccatcgtg taaaaaaccc atggttggaa catagcctat actaagttga tgtgatttcc
     4441 aatcttttac aatttgtttt gcttctttga cagaagtaat gacttgcata tttgtatcct
     4501 tagtataatt tatctaataa ttcatcatct aaataatcaa agctgtgctc ttgggaagga
     4561 aaaataccgc ttttaacttc atctctatat ttttcaactc ctacttgagg atcaatttta
     4621 tcaaaatgct ttacaaattt tgctttaaaa tctttattta aacccaaaag atcgtgataa
     4681 actaaaactt gtccatcgca gtatttgcct gaacctatgc cgattgttgg aatttctaaa
     4741 atagagctta ttttttgtgc tagttttaca ggcacacatt ctaaaaccaa catacaagca
     4801 cccgcatctt gcacagcttt tgcatcatct ataatttttt gggctgattg taaatcttta
     4861 ccttgaaccc tatagccacc tagcatattt acagcttgtg gggttagtcc taggtgagca
     4921 acgacgggta ttcctgattg ggaaatcaat ttaatcttac ttgcgatttc tataccccct
     4981 tccactttta ccccatttgc gtggctttct ttgataaatc ttgaggcatt taagatagcg
     5041 tcacgatctg aactttgata agacataaaa ggcatatcag caagtacgaa agacttttta
     5101 gctccgcgag aaatagcttt ggtaaaaatc aacatttcat ccatagtaac acttaaagta
     5161 tcttgcatac caagtaccgt catggctaat gaatctccaa ccaatataat atctatatcg
     5221 ctattgtcta aaattcttgc actatgataa tcatacgcac ttaccatggt tattttttca
     5281 tttttggcct ttttttccaa aaaactaatc atactttttc tcattttgca tacctcaatt
     5341 tttagctata aaataataag caaaaaacta gcatataatt tttcataaat agtaaatgaa
     5401 tgataaagta agttatattt aatcgatgga ttgctttaat ggttacaatt ttagaaaatt
     5461 tcagttcatg ttaaaggata tttaaagaaa ataaagcttt aaaaagtatt ttgtttaaaa
     5521 ttatttaaat agaaagatat tttatgaaaa aaataacttt atttttactt ttcttaaatt
     5581 tagtgtttgg gcaagataag atattaaata attggtttaa agagtataat acaagcggca
     5641 cttttgtttt ttatgatgga aaaacttggg cgagtaacga cttttcaagg gctatggaga
     5701 ctttctctcc cgcttccact tttaaaattt ttaatgctct aattgcactt gatagtggtg
     5761 tgataaaaac taaaaaagaa attttttatc actatagagg tgaaaaagta tttttatctt
     5821 cttgggcgca agatatgaat ttaagttcag ctataaaata ttctaatgtt cttgctttta
     5881 aagaagtggc aagaagaatt ggtatcaaaa ctatgcaaga atatttaaac aagcttcatt
     5941 atggtaatgc taaaatttcc aagatcgata ctttttggct tgacaactca ctaaaaataa
     6001 gcgctaaaga acaagcaatt ttgcttttta gactttcaca aaatagctta cctttttctc
     6061 aagaagcaat gaatagtgtt aaggaaatga tttatttaaa aaatatggaa aatttagagc
     6121 tttttggaaa aacaggtttt aatgatgagc aaaaaattgc ttggattgta ggttttgtgt
     6181 atttaaaaga tgaaaataaa tataaggctt tcgcgctaaa tttagatatt gataaatttg
     6241 aagatttata taaaagagaa aaaattttag aaaaatattt agatgaactt gtaaaaaaag
     6301 ttaaaaatga tggctagtga gtatttcgta aaatgcaaaa atacttaatt gtatgatttg
     6361 cgtacactta aagtactcat taaaaaatta aatttttgct cttatttatc aagttttcct
     6421 acgatgatag ggttaaaggc ttttatggat agcaaaagcg tatcgccgat ttttacatct
     6481 tg
//
